Citrus Sinensis ID: 029287

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MQVKGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLVTE
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccccHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEcccccHHHHHHHHHHHHccEEEEHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mqvkggkgpficfvlggpgsgkgtqCAKIVKNyglthlsaGELLRREIASNSEYGTTILNtikegkivpsEVTVSLIQKEmessdskkflidgfprseeNRAAFERImgaepdivlffdcpeEEMVNRVLnrnegrvddniDTVRKRLQVFKALNLPVINYYARrgklytinavgTVDEIFEQVRAVFAALKLVTE
Flexible Loop (DISEMBL)
mqvkggkgpfICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTilntikegkivpSEVTVSLIQkemessdskkflidgfpRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVlnrnegrvddnidtVRKRLQvfkalnlpvinyyARRGKLYTINAVGTVDEIFEQVRAVFAALKLVTE
Low Complexity Region (SEG)
MQVKGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLVTE
Disordered region (IsUnstruct)
********PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLI************************AAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLV**
Disordered Region (DISOPRED)
************FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA*****GTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLV**
Disordered Region (DISEMBL)
MQVKGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLVTE
Disordered Region (DISPRO)
*****GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVKGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLVTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
O24464	231	Adenylate kinase OS=Prunu	N/A	no	0.933	0.792	0.775	4e-84
O04905	202	UMP/CMP kinase OS=Arabido	no	no	0.938	0.910	0.635	2e-65
Q7ZX23	193	UMP-CMP kinase OS=Xenopus	N/A	no	0.918	0.932	0.478	3e-46
Q28H12	196	UMP-CMP kinase OS=Xenopus	no	no	0.918	0.918	0.473	7e-46
P30085	196	UMP-CMP kinase OS=Homo sa	yes	no	0.918	0.918	0.478	9e-45
Q4KM73	196	UMP-CMP kinase OS=Rattus	yes	no	0.918	0.918	0.478	2e-44
Q5ZKE7	196	UMP-CMP kinase OS=Gallus	yes	no	0.918	0.918	0.478	4e-44
Q9DBP5	196	UMP-CMP kinase OS=Mus mus	yes	no	0.918	0.918	0.478	4e-44
Q2KIW9	196	UMP-CMP kinase OS=Bos tau	yes	no	0.918	0.918	0.473	7e-44
Q29561	196	UMP-CMP kinase OS=Sus scr	yes	no	0.918	0.918	0.473	8e-44

>sp|O24464|KAD_PRUAR Adenylate kinase OS=Prunus armeniaca PE=2 SV=1

 Score =  310 bits (794), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 166/183 (90%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           PF+ FVLGGPGSGKGTQCAKIV+ +G TH+SAG+LLRREIAS S YG+ IL+TI+EGKIV
Sbjct: 47  PFVTFVLGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIASGSAYGSVILSTIREGKIV 106

Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
           PS+VTV LIQKEMESSD+ KFLIDGFPRSEENR AFE+ +GAEPD+VLFFDCPE+EMV R
Sbjct: 107 PSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGAEPDVVLFFDCPEQEMVKR 166

Query: 129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188
           VLNRN+GRVDDNIDT++KRL++F  LN PVINYY++RGKL+ INAVGTVDEIFE+VR +F
Sbjct: 167 VLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHKINAVGTVDEIFEKVRPIF 226

Query: 189 AAL 191
           A L
Sbjct: 227 APL 229

This small ubiquitous enzyme is essential for maintenance and cell growth.
Prunus armeniaca (taxid: 36596)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|O04905|UMPK_ARATH UMP/CMP kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1

 Score =  248 bits (633), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/184 (63%), Positives = 146/184 (79%)

Query: 6   GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG 65
           GK P + FVLGGPGSGKGTQCA IV++YG THLSAG+LLR EI S SE GT I N IKEG
Sbjct: 11  GKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 70

Query: 66  KIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125
           KIVPSEVT+ L+QK ++ + + KFLIDGFPR+EENRAAFE++   EP  VLFFDCPEEEM
Sbjct: 71  KIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEM 130

Query: 126 VNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVR 185
             R+L RN+GR DDNI+T+RKR +VF   +LPVI+YY  +GK+  INA   ++ +FE+V+
Sbjct: 131 EKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVK 190

Query: 186 AVFA 189
           A+F+
Sbjct: 191 AIFS 194

Furnishes the cell with pyrimidines. Accepts UMP and CMP as phosphate acceptors with high activity; does not act on dCMP and dUMP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q7ZX23|KCY_XENLA UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2

 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 130/190 (68%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
           P + FVLGGPG+GKGTQC +IV+ YG THLSAG+LLR E    +S+YG  I + I++GKI
Sbjct: 3   PLVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGKI 62

Query: 68  VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
           VP E+T+SL+Q+ ME      ++  KFLIDGFPR+E+N   +ER M  + D+  VLFFDC
Sbjct: 63  VPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDC 122

Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R  + GR DDN +++ KR+Q +     P+I+ Y +RGK+  ++A  +VD
Sbjct: 123 DNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGKVRKVDASKSVD 182

Query: 179 EIFEQVRAVF 188
           E+F +V+ +F
Sbjct: 183 EVFTKVQNIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q28H12|KCY_XENTR UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2

 Score =  183 bits (464), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 130/190 (68%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
           PF+ FVLGGPG+GKGTQC +IV+ YG THLSAG+LLR E    +S+YG  I + I++G+I
Sbjct: 3   PFVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGRI 62

Query: 68  VPSEVTVSLIQKEMESS-----DSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
           VP E+T+SL+Q+ ME +     +  KFLIDGFPR+E+N   +ER M  + D+  VLFFDC
Sbjct: 63  VPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDC 122

Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R  + GR DDN +++ KR+Q +     P+I+ Y + GK+  ++A  +VD
Sbjct: 123 DNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGKVKKVDASKSVD 182

Query: 179 EIFEQVRAVF 188
           E+F +V+ +F
Sbjct: 183 EVFTKVQDIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|P30085|KCY_HUMAN UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3

 Score =  179 bits (455), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 129/190 (67%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
           P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IKEGKI
Sbjct: 3   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62

Query: 68  VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
           VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct: 63  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R  + GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct: 123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 182

Query: 179 EIFEQVRAVF 188
           E+F++V  +F
Sbjct: 183 EVFDEVVQIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q4KM73|KCY_RAT UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 128/190 (67%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
           P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IKEGKI
Sbjct: 3   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62

Query: 68  VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
           VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct: 63  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  ++R L R  + GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct: 123 NNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVD 182

Query: 179 EIFEQVRAVF 188
           E+F  V  +F
Sbjct: 183 EVFGDVMKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q5ZKE7|KCY_CHICK UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1

 Score =  177 bits (449), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 127/190 (66%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-SNSEYGTTILNTIKEGKI 67
           P + FVLGGPG+GKGTQCA+IV+ YG THLSAG+LLR E     S+YG  I N IKEG+I
Sbjct: 3   PVVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEI 62

Query: 68  VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
           VP E+T+SL+++ M+     +S   KFLIDGFPR+E+N   + + M  + D+  VLFFDC
Sbjct: 63  VPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDC 122

Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R  + GR DDN +++ KR+  +     P+I+ Y R GK+  ++A  +VD
Sbjct: 123 DNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSVD 182

Query: 179 EIFEQVRAVF 188
           E+FE+V  +F
Sbjct: 183 EVFEKVVQIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q9DBP5|KCY_MOUSE UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1

 Score =  177 bits (449), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 128/190 (67%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
           P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IKEGKI
Sbjct: 3   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62

Query: 68  VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
           VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct: 63  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R  + GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct: 123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVD 182

Query: 179 EIFEQVRAVF 188
           E+F +V  +F
Sbjct: 183 EVFGEVVKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q2KIW9|KCY_BOVIN UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2

 Score =  176 bits (447), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 129/190 (67%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
           P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IK+GKI
Sbjct: 3   PQVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKI 62

Query: 68  VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
           VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct: 63  VPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R  + GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct: 123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVD 182

Query: 179 EIFEQVRAVF 188
           E+F++V  +F
Sbjct: 183 EVFDEVVKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q29561|KCY_PIG UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1

 Score =  176 bits (447), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 129/190 (67%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
           P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IK+GKI
Sbjct: 3   PKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKI 62

Query: 68  VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
           VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct: 63  VPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R  + GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct: 123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 182

Query: 179 EIFEQVRAVF 188
           E+F++V  +F
Sbjct: 183 EVFDEVVKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
255539731	298	uridylate kinase plant, putative [Ricinu	0.948	0.624	0.790	2e-82
3913952	231	RecName: Full=Adenylate kinase; Short=AK	0.933	0.792	0.775	2e-82
449460858	271	PREDICTED: adenylate kinase-like [Cucumi	0.954	0.690	0.780	1e-81
225466049	238	PREDICTED: adenylate kinase [Vitis vinif	0.933	0.768	0.770	2e-80
224136762	235	predicted protein [Populus trichocarpa]	0.969	0.808	0.742	3e-80
356544256	236	PREDICTED: adenylate kinase-like [Glycin	0.928	0.771	0.758	7e-79
297799466	758	hypothetical protein ARALYDRAFT_354257 [	0.969	0.250	0.721	3e-78
30686829	249	adenylate kinase family protein [Arabido	0.969	0.763	0.721	5e-78
356531704	231	PREDICTED: adenylate kinase-like [Glycin	0.928	0.787	0.752	6e-78
357490447	218	Adenylate kinase [Medicago truncatula] g	0.918	0.825	0.733	5e-75

>gi|255539731|ref|XP_002510930.1| uridylate kinase plant, putative [Ricinus communis] gi|223550045|gb|EEF51532.1| uridylate kinase plant, putative [Ricinus communis]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 147/186 (79%), Positives = 165/186 (88%)

Query: 5   GGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE 64
           G K PF+ FVLGGPGSGKGTQC KI K +G  HLSAG+LLRREI SNS+ G  ILNTIKE
Sbjct: 108 GEKTPFMTFVLGGPGSGKGTQCLKIAKTFGFKHLSAGDLLRREILSNSDDGAMILNTIKE 167

Query: 65  GKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124
           G+IVPSEVTV LI+KEME SD+ KFLIDGFPR+EENR AFE I+GAEP+IVLFFDCP+EE
Sbjct: 168 GRIVPSEVTVKLIKKEMELSDNSKFLIDGFPRTEENRIAFEHIIGAEPNIVLFFDCPQEE 227

Query: 125 MVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
           MV RVLNRNEGRVDDNIDT++KRL+VF ALNLPVI YY+++GKL+TINAVGTVDEIFEQV
Sbjct: 228 MVKRVLNRNEGRVDDNIDTIKKRLEVFSALNLPVIGYYSKKGKLHTINAVGTVDEIFEQV 287

Query: 185 RAVFAA 190
           R VFAA
Sbjct: 288 RPVFAA 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3913952|sp|O24464.1|KAD_PRUAR RecName: Full=Adenylate kinase; Short=AK; AltName: Full=ATP-AMP transphosphorylase gi|2351578|gb|AAB68604.1| adenylate kinase homolog [Prunus armeniaca]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 166/183 (90%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           PF+ FVLGGPGSGKGTQCAKIV+ +G TH+SAG+LLRREIAS S YG+ IL+TI+EGKIV
Sbjct: 47  PFVTFVLGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIASGSAYGSVILSTIREGKIV 106

Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
           PS+VTV LIQKEMESSD+ KFLIDGFPRSEENR AFE+ +GAEPD+VLFFDCPE+EMV R
Sbjct: 107 PSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGAEPDVVLFFDCPEQEMVKR 166

Query: 129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188
           VLNRN+GRVDDNIDT++KRL++F  LN PVINYY++RGKL+ INAVGTVDEIFE+VR +F
Sbjct: 167 VLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHKINAVGTVDEIFEKVRPIF 226

Query: 189 AAL 191
           A L
Sbjct: 227 APL 229

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460858|ref|XP_004148161.1| PREDICTED: adenylate kinase-like [Cucumis sativus] gi|449499691|ref|XP_004160888.1| PREDICTED: adenylate kinase-like [Cucumis sativus]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 146/187 (78%), Positives = 164/187 (87%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           K PFI FVLGGPGSGKGTQC KIV+N+G THLSAG+LLRREIASNS  GT ILNTIKEGK
Sbjct: 49  KTPFITFVLGGPGSGKGTQCMKIVENFGFTHLSAGDLLRREIASNSADGTMILNTIKEGK 108

Query: 67  IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
           IVPSE+TV LIQKEMESSD+ KFLIDGFPRSEENR AFE+IMG EPD+VLFFDCPE+EMV
Sbjct: 109 IVPSELTVRLIQKEMESSDNYKFLIDGFPRSEENRIAFEQIMGVEPDVVLFFDCPEDEMV 168

Query: 127 NRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
            RVLNRN+GRVDDNI T++KRL+VF ALNLPV+ YY  +GKLY I AVG+VDEI++QV  
Sbjct: 169 KRVLNRNQGRVDDNIVTIKKRLKVFDALNLPVVKYYMEKGKLYKIRAVGSVDEIYKQVYP 228

Query: 187 VFAALKL 193
           VFA+L  
Sbjct: 229 VFASLNF 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466049|ref|XP_002263160.1| PREDICTED: adenylate kinase [Vitis vinifera] gi|296084179|emb|CBI24567.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/183 (77%), Positives = 165/183 (90%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           K PFI FV+GGPGSGKGTQCAKIV+ +G TH+SAGELLRREI+ NSE+G+ IL++I+EGK
Sbjct: 50  KTPFITFVVGGPGSGKGTQCAKIVETFGFTHISAGELLRREISCNSEHGSMILDSIREGK 109

Query: 67  IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
           IVPSEVTV LI+KEMESS + KFLIDGFPR+EENR AFER++GAEP+ VLFF CPEEEMV
Sbjct: 110 IVPSEVTVKLIEKEMESSKNNKFLIDGFPRTEENRIAFERVIGAEPNFVLFFHCPEEEMV 169

Query: 127 NRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
            R+L+RNEGRVDDNIDT++KRL+VF AL+LPVI YY+ +GKLY INAVGTVDEIFEQVR 
Sbjct: 170 KRLLSRNEGRVDDNIDTIKKRLEVFTALHLPVIKYYSEKGKLYKINAVGTVDEIFEQVRP 229

Query: 187 VFA 189
           VFA
Sbjct: 230 VFA 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136762|ref|XP_002322409.1| predicted protein [Populus trichocarpa] gi|222869405|gb|EEF06536.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/190 (74%), Positives = 168/190 (88%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           + PFI FVLGGPGSGKGTQC KIV+ +G  HLSAGELLRREI SNSE+ + +LNTIKEG+
Sbjct: 42  RNPFITFVLGGPGSGKGTQCQKIVETFGFKHLSAGELLRREIESNSEHWSQMLNTIKEGR 101

Query: 67  IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
           IVPSEVTV LIQ+EMESSDS KFLIDGFPR+EENR AFE+++G EP++VLFFDCPEEEMV
Sbjct: 102 IVPSEVTVRLIQQEMESSDSNKFLIDGFPRTEENRIAFEQLIGLEPNVVLFFDCPEEEMV 161

Query: 127 NRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
            RVLNRN+GRVDDNIDTV+KRL+VF+ LNLPVI+YY++RGKL  INAVGT DEIFE+VR 
Sbjct: 162 KRVLNRNQGRVDDNIDTVKKRLKVFEILNLPVIDYYSKRGKLCKINAVGTEDEIFEKVRP 221

Query: 187 VFAALKLVTE 196
           +F+A  +++ 
Sbjct: 222 IFSACGMMSH 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544256|ref|XP_003540570.1| PREDICTED: adenylate kinase-like [Glycine max]

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 138/182 (75%), Positives = 164/182 (90%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           P I FVLGGPGSGKGTQCAKIV+ +G  HLSAG+LLRRE+ S+SEYG+ I+NTI+EGKIV
Sbjct: 49  PLITFVLGGPGSGKGTQCAKIVETFGFKHLSAGDLLRREMVSDSEYGSMIMNTIREGKIV 108

Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
           PS VTV LI +EM+SSD+ KFLIDGFPRS+ENR AFE+I+GAEPD+VLFFDCPEEEMV R
Sbjct: 109 PSGVTVKLILREMKSSDNHKFLIDGFPRSQENRIAFEQIIGAEPDMVLFFDCPEEEMVKR 168

Query: 129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188
           VL+RN+GR+DDNIDT++ RL+VF++LNLPVI+YYA++GKLY INAVGTVDEIFE VR VF
Sbjct: 169 VLSRNQGRIDDNIDTIKNRLKVFESLNLPVIDYYAKKGKLYRINAVGTVDEIFEHVRPVF 228

Query: 189 AA 190
            A
Sbjct: 229 EA 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799466|ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata] gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 137/190 (72%), Positives = 164/190 (86%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           K PFI FVLGGPGSGKGTQC KIV+ +GL HLSAG+LLRREIA ++E G  ILN IK+GK
Sbjct: 51  KAPFITFVLGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGK 110

Query: 67  IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
           IVPSEVTV LIQKE+ESSD++KFLIDGFPR+EENR AFERI+ A+PD+VLFFDCPEEEMV
Sbjct: 111 IVPSEVTVKLIQKELESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMV 170

Query: 127 NRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
            RVLNRN+GR+DDNI T++KRL++F ALN PVI+YY  +GKLYTINAVGTVD+IF+ V  
Sbjct: 171 KRVLNRNQGRIDDNITTMKKRLKIFNALNRPVIDYYKNKGKLYTINAVGTVDDIFQHVLP 230

Query: 187 VFAALKLVTE 196
           +F + + + E
Sbjct: 231 IFNSFEQLKE 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686829|ref|NP_194258.2| adenylate kinase family protein [Arabidopsis thaliana] gi|38603926|gb|AAR24708.1| At4g25280 [Arabidopsis thaliana] gi|44681436|gb|AAS47658.1| At4g25280 [Arabidopsis thaliana] gi|332659634|gb|AEE85034.1| adenylate kinase family protein [Arabidopsis thaliana]

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 137/190 (72%), Positives = 164/190 (86%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           K PFI FVLGGPGSGKGTQC KIV+ +GL HLSAG+LLRREIA ++E G  ILN IK+GK
Sbjct: 41  KAPFITFVLGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGK 100

Query: 67  IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
           IVPSEVTV LIQKE+ESSD++KFLIDGFPR+EENR AFERI+ A+PD+VLFFDCPEEEMV
Sbjct: 101 IVPSEVTVKLIQKELESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMV 160

Query: 127 NRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
            RVLNRN+GR+DDNI T++KRL++F ALN PVI+YY  +GKLYTINAVGTVD+IF+ V  
Sbjct: 161 KRVLNRNQGRIDDNITTMKKRLKIFNALNRPVIDYYKNKGKLYTINAVGTVDDIFQHVLP 220

Query: 187 VFAALKLVTE 196
           +F + + + E
Sbjct: 221 IFNSFEQLKE 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531704|ref|XP_003534416.1| PREDICTED: adenylate kinase-like [Glycine max]

 Score =  295 bits (755), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 162/182 (89%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           P I FVLGGPGSGKGTQC KIV+ +G  HLSAG+LLRRE+ S+SEYG+ I+NTI EG+IV
Sbjct: 44  PLITFVLGGPGSGKGTQCGKIVETFGFKHLSAGDLLRREMVSDSEYGSMIMNTIGEGRIV 103

Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
           PSEVTV LI +EMESSD+ KFLIDGFPRS+ENR AFE+I+GAEP +VLFFDCPEEEMV R
Sbjct: 104 PSEVTVKLILREMESSDNHKFLIDGFPRSQENRIAFEQIIGAEPHMVLFFDCPEEEMVKR 163

Query: 129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188
           VL+RN+GR+DDNI+T++ RLQVF++LNLPVI+YYA++GKLY INAVGTVDEIFE VR VF
Sbjct: 164 VLSRNQGRIDDNINTIKNRLQVFESLNLPVIDYYAKKGKLYRINAVGTVDEIFEHVRPVF 223

Query: 189 AA 190
            A
Sbjct: 224 EA 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490447|ref|XP_003615511.1| Adenylate kinase [Medicago truncatula] gi|355516846|gb|AES98469.1| Adenylate kinase [Medicago truncatula]

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 157/180 (87%)

Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           I FVLGGPGSGKGTQCA+IV+ +G  HLSAG+LLR+ + S+SEYG  IL TI+EG+IVPS
Sbjct: 33  ITFVLGGPGSGKGTQCARIVETFGFKHLSAGDLLRKAMVSDSEYGAMILETIREGRIVPS 92

Query: 71  EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL 130
            VTV LI +EM+  D++KFLIDGFPRSEENR AFE I G EPD VL+FDCPEEEMV RVL
Sbjct: 93  AVTVRLILREMQYGDNRKFLIDGFPRSEENRIAFEHITGTEPDFVLYFDCPEEEMVKRVL 152

Query: 131 NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190
           +RN+GR+DDNIDT++KRL+VF+ALNLPVI++YARRG+L+ INAVGT DEIFEQVR VFAA
Sbjct: 153 SRNQGRIDDNIDTIKKRLKVFEALNLPVIDHYARRGRLHRINAVGTEDEIFEQVRPVFAA 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2122644	249	AT4G25280 [Arabidopsis thalian	0.969	0.763	0.721	4.1e-72
TAIR|locus:1005716878	208	PYR6 [Arabidopsis thaliana (ta	0.938	0.884	0.635	1.2e-60
TAIR|locus:2101472	204	AT3G60180 [Arabidopsis thalian	0.918	0.882	0.588	2.9e-55
UNIPROTKB|P30085	196	CMPK1 "UMP-CMP kinase" [Homo s	0.918	0.918	0.478	4e-42
UNIPROTKB|Q5ZKE7	196	CMPK1 "UMP-CMP kinase" [Gallus	0.918	0.918	0.478	8.4e-42
RGD|1310116	196	Cmpk1 "cytidine monophosphate	0.918	0.918	0.478	8.4e-42
MGI|MGI:1913838	196	Cmpk1 "cytidine monophosphate	0.918	0.918	0.478	1.1e-41
UNIPROTKB|Q2KIW9	196	CMPK1 "UMP-CMP kinase" [Bos ta	0.918	0.918	0.473	1.7e-41
UNIPROTKB|F1PIG2	228	CMPK1 "Uncharacterized protein	0.918	0.789	0.473	1.7e-41
UNIPROTKB|Q29561	196	CMPK1 "UMP-CMP kinase" [Sus sc	0.918	0.918	0.473	1.7e-41

TAIR|locus:2122644 AT4G25280 [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 137/190 (72%), Positives = 164/190 (86%)

Query:     7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
             K PFI FVLGGPGSGKGTQC KIV+ +GL HLSAG+LLRREIA ++E G  ILN IK+GK
Sbjct:    41 KAPFITFVLGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGK 100

Query:    67 IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
             IVPSEVTV LIQKE+ESSD++KFLIDGFPR+EENR AFERI+ A+PD+VLFFDCPEEEMV
Sbjct:   101 IVPSEVTVKLIQKELESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMV 160

Query:   127 NRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
              RVLNRN+GR+DDNI T++KRL++F ALN PVI+YY  +GKLYTINAVGTVD+IF+ V  
Sbjct:   161 KRVLNRNQGRIDDNITTMKKRLKIFNALNRPVIDYYKNKGKLYTINAVGTVDDIFQHVLP 220

Query:   187 VFAALKLVTE 196
             +F + + + E
Sbjct:   221 IFNSFEQLKE 230

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:1005716878 PYR6 [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 117/184 (63%), Positives = 146/184 (79%)

Query:     6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG 65
             GK P + FVLGGPGSGKGTQCA IV++YG THLSAG+LLR EI S SE GT I N IKEG
Sbjct:    11 GKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 70

Query:    66 KIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125
             KIVPSEVT+ L+QK ++ + + KFLIDGFPR+EENRAAFE++   EP  VLFFDCPEEEM
Sbjct:    71 KIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEM 130

Query:   126 VNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVR 185
               R+L RN+GR DDNI+T+RKR +VF   +LPVI+YY  +GK+  INA   ++ +FE+V+
Sbjct:   131 EKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVK 190

Query:   186 AVFA 189
             A+F+
Sbjct:   191 AIFS 194

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS;IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0004127 "cytidylate kinase activity" evidence=IDA

GO:0009173 "pyrimidine ribonucleoside monophosphate metabolic process" evidence=TAS

TAIR|locus:2101472 AT3G60180 [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 106/180 (58%), Positives = 136/180 (75%)

Query:    11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
             + FVLGGPGSGKGTQCA +VK++  TH SAG+LLR EI S SE+G  I + I EG+IVPS
Sbjct:    23 VVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQSMIAEGRIVPS 82

Query:    71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL 130
             E+TV L+ K ME S + KFLIDGFPR+EENR  FE +   EP  VLFFDCPEEE+  R++
Sbjct:    83 EITVKLLCKAMEESGNDKFLIDGFPRNEENRNVFENVARIEPAFVLFFDCPEEELERRIM 142

Query:   131 NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190
             +RN+GR DDNI+T++KR +VF    LP+I+YY  +GKL  INA  + +E+FE VR +FA+
Sbjct:   143 SRNQGREDDNIETIKKRFKVFVESTLPIISYYESKGKLRKINAAKSSEEVFEAVRVLFAS 202

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

UNIPROTKB|P30085 CMPK1 "UMP-CMP kinase" [Homo sapiens (taxid:9606)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 91/190 (47%), Positives = 129/190 (67%)

Query:     9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
             P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IKEGKI
Sbjct:     3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62

Query:    68 VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
             VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct:    63 VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query:   121 PEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
               E  + R L R +  GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct:   123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 182

Query:   179 EIFEQVRAVF 188
             E+F++V  +F
Sbjct:   183 EVFDEVVQIF 192

GO:0005524 "ATP binding" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0006225 "UDP biosynthetic process" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=IEA

GO:0006240 "dCDP biosynthetic process" evidence=IEA

GO:0018963 "phthalate metabolic process" evidence=IEA

GO:0022602 "ovulation cycle process" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0046705 "CDP biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0006222 "UMP biosynthetic process" evidence=TAS

UNIPROTKB|Q5ZKE7 CMPK1 "UMP-CMP kinase" [Gallus gallus (taxid:9031)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 91/190 (47%), Positives = 127/190 (66%)

Query:     9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
             P + FVLGGPG+GKGTQCA+IV+ YG THLSAG+LLR E     S+YG  I N IKEG+I
Sbjct:     3 PVVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEI 62

Query:    68 VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
             VP E+T+SL+++ M+     +S   KFLIDGFPR+E+N   + + M  + D+  VLFFDC
Sbjct:    63 VPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDC 122

Query:   121 PEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
               E  + R L R +  GR DDN +++ KR+  +     P+I+ Y R GK+  ++A  +VD
Sbjct:   123 DNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSVD 182

Query:   179 EIFEQVRAVF 188
             E+FE+V  +F
Sbjct:   183 EVFEKVVQIF 192

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1310116 Cmpk1 "cytidine monophosphate (UMP-CMP) kinase 1" [Rattus norvegicus (taxid:10116)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 91/190 (47%), Positives = 128/190 (67%)

Query:     9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
             P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IKEGKI
Sbjct:     3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62

Query:    68 VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
             VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct:    63 VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query:   121 PEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
               E  ++R L R +  GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct:   123 NNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVD 182

Query:   179 EIFEQVRAVF 188
             E+F  V  +F
Sbjct:   183 EVFGDVMKIF 192

GO:0004127 "cytidylate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006225 "UDP biosynthetic process" evidence=IDA

GO:0006227 "dUDP biosynthetic process" evidence=IDA

GO:0006240 "dCDP biosynthetic process" evidence=IDA

GO:0018963 "phthalate metabolic process" evidence=IEP

GO:0022602 "ovulation cycle process" evidence=IEP

GO:0033862 "UMP kinase activity" evidence=IDA

GO:0046705 "CDP biosynthetic process" evidence=IDA

MGI|MGI:1913838 Cmpk1 "cytidine monophosphate (UMP-CMP) kinase 1" [Mus musculus (taxid:10090)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 91/190 (47%), Positives = 128/190 (67%)

Query:     9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
             P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IKEGKI
Sbjct:     3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62

Query:    68 VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
             VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct:    63 VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query:   121 PEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
               E  + R L R +  GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct:   123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVD 182

Query:   179 EIFEQVRAVF 188
             E+F +V  +F
Sbjct:   183 EVFGEVVKIF 192

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0006225 "UDP biosynthetic process" evidence=ISO

GO:0006227 "dUDP biosynthetic process" evidence=ISO

GO:0006240 "dCDP biosynthetic process" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=ISO

GO:0046705 "CDP biosynthetic process" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=IEA

UNIPROTKB|Q2KIW9 CMPK1 "UMP-CMP kinase" [Bos taurus (taxid:9913)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 90/190 (47%), Positives = 129/190 (67%)

Query:     9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
             P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IK+GKI
Sbjct:     3 PQVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKI 62

Query:    68 VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
             VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct:    63 VPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query:   121 PEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
               E  + R L R +  GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct:   123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVD 182

Query:   179 EIFEQVRAVF 188
             E+F++V  +F
Sbjct:   183 EVFDEVVKIF 192

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

UNIPROTKB|F1PIG2 CMPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 90/190 (47%), Positives = 128/190 (67%)

Query:     9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASN-SEYGTTILNTIKEGKI 67
             P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  +  S+YG  I   IK+GKI
Sbjct:    35 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPASQYGELIEKYIKDGKI 94

Query:    68 VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
             VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct:    95 VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 154

Query:   121 PEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
               E  + R L R +  GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct:   155 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 214

Query:   179 EIFEQVRAVF 188
             E+F++V  +F
Sbjct:   215 EVFDEVVKIF 224

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q29561 CMPK1 "UMP-CMP kinase" [Sus scrofa (taxid:9823)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 90/190 (47%), Positives = 129/190 (67%)

Query:     9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
             P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IK+GKI
Sbjct:     3 PKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKI 62

Query:    68 VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
             VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct:    63 VPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query:   121 PEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
               E  + R L R +  GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct:   123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 182

Query:   179 EIFEQVRAVF 188
             E+F++V  +F
Sbjct:   183 EVFDEVVKIF 192

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q89ZJ0	KAD_BACTN	2, ., 7, ., 4, ., 3	0.3672	0.8724	0.9047	yes	no
B0RP52	KAD_XANCB	2, ., 7, ., 4, ., 3	0.3575	0.8826	0.9251	yes	no
Q5ZKE7	KCY_CHICK	2, ., 7, ., 4, ., 1, 4	0.4789	0.9183	0.9183	yes	no
B1MGB3	KAD_MYCA9	2, ., 7, ., 4, ., 3	0.4022	0.8469	0.9171	yes	no
B4SI37	KAD_STRM5	2, ., 7, ., 4, ., 3	0.3442	0.9030	0.9465	yes	no
Q2KIW9	KCY_BOVIN	2, ., 7, ., 4, ., 1, 4	0.4736	0.9183	0.9183	yes	no
Q8P5P5	KAD_XANCP	2, ., 7, ., 4, ., 3	0.3631	0.8826	0.9251	yes	no
C1CXE5	KAD_DEIDV	2, ., 7, ., 4, ., 3	0.3297	0.8877	0.8832	yes	no
Q8PH23	KAD_XANAC	2, ., 7, ., 4, ., 3	0.3631	0.8826	0.9251	yes	no
P15700	UMPK_YEAST	2, ., 7, ., 4, ., -	0.4530	0.8877	0.8529	yes	no
Q64XA6	KAD_BACFR	2, ., 7, ., 4, ., 3	0.3898	0.8724	0.9047	yes	no
Q4KM73	KCY_RAT	2, ., 7, ., 4, ., 1, 4	0.4789	0.9183	0.9183	yes	no
A5GIS6	KAD_SYNPW	2, ., 7, ., 4, ., 3	0.3277	0.8928	0.9562	yes	no
Q7MW54	KAD_PORGI	2, ., 7, ., 4, ., 3	0.3885	0.8622	0.8711	yes	no
Q5LGH0	KAD_BACFN	2, ., 7, ., 4, ., 3	0.3898	0.8724	0.9047	yes	no
Q2P743	KAD_XANOM	2, ., 7, ., 4, ., 3	0.3591	0.8928	0.9358	yes	no
B2RIY8	KAD_PORG3	2, ., 7, ., 4, ., 3	0.3885	0.8622	0.8711	yes	no
Q9DBP5	KCY_MOUSE	2, ., 7, ., 4, ., 1, 4	0.4789	0.9183	0.9183	yes	no
Q9RSK7	KAD_DEIRA	2, ., 7, ., 4, ., 3	0.3351	0.8877	0.8832	yes	no
A6L0Z9	KAD_BACV8	2, ., 7, ., 4, ., 3	0.3695	0.9081	0.9417	yes	no
Q29561	KCY_PIG	2, ., 7, ., 4, ., 1, 4	0.4736	0.9183	0.9183	yes	no
P30085	KCY_HUMAN	2, ., 7, ., 4, ., 1, 4	0.4789	0.9183	0.9183	yes	no
Q7ZWE9	KCY_DANRE	2, ., 7, ., 4, ., 1, 4	0.4736	0.9183	0.9183	yes	no
Q20140	KAD1_CAEEL	2, ., 7, ., 4, ., 3	0.4917	0.8928	0.8333	yes	no
P20425	KCY_DICDI	2, ., 7, ., 4, ., 1, 4	0.4759	0.9336	0.9384	yes	no
C0R000	KAD_BRAHW	2, ., 7, ., 4, ., 3	0.3351	0.9081	0.9621	yes	no
O24464	KAD_PRUAR	2, ., 7, ., 4, ., 3	0.7759	0.9336	0.7922	N/A	no
A5GVX9	KAD_SYNR3	2, ., 7, ., 4, ., 3	0.3571	0.8928	0.9615	yes	no
O59771	UMPK_SCHPO	2, ., 7, ., 4, ., -	0.4078	0.8724	0.8952	yes	no
A6LD69	KAD_PARD8	2, ., 7, ., 4, ., 3	0.3529	0.9234	0.9526	yes	no
Q3BPM9	KAD_XANC5	2, ., 7, ., 4, ., 3	0.3631	0.8826	0.9251	yes	no
Q4UYC6	KAD_XANC8	2, ., 7, ., 4, ., 3	0.3631	0.8826	0.9251	yes	no
Q3AW74	KAD_SYNS9	2, ., 7, ., 4, ., 3	0.3519	0.8877	0.9508	yes	no
Q5H4A4	KAD_XANOR	2, ., 7, ., 4, ., 3	0.3591	0.8928	0.9358	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.976
4th Layer	2.7.4.14	0.914
3rd Layer	2.7.4.3	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XV.2929.1	adenylate kinase family protein (EC-2.7.4.14) (224 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_V000114	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (817 aa)						•			0.901
	eugene3.00051017	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (810 aa)						•			0.901
	estExt_fgenesh4_pg.C_LG_VII0648	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (813 aa)						•			0.901
	fgenesh4_pg.C_LG_I002334	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)						•			0.900
	estExt_Genewise1_v1.C_880196	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)						•			0.900
	gw1.VIII.327.1	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (342 aa)						•			0.900
	gw1.XVII.653.1	hypothetical protein (417 aa)						•			0.899
	gw1.XIII.2192.1	polyribonucleotide nucleotidyltransferase (EC-2.7.7.8) (853 aa)						•			0.899
	gw1.II.1445.1	SubName- Full=Putative uncharacterized protein; (164 aa)						•			0.899
	gw1.I.2477.1	hypothetical protein (950 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	1e-123
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	6e-98
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	4e-66
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	2e-65
pfam00406	186	pfam00406, ADK, Adenylate kinase	9e-58
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	8e-55
TIGR01351	210	TIGR01351, adk, adenylate kinase	2e-53
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	9e-47
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	4e-45
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	1e-39
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	3e-37
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	4e-33
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	1e-31
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	1e-29
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	4e-29
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	7e-27
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	2e-23
PLN02674	244	PLN02674, PLN02674, adenylate kinase	9e-22
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	9e-19
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	5e-17
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	4e-15
pfam13207	114	pfam13207, AAA_17, AAA domain	3e-06
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	3e-05
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	7e-04
COG0125	208	COG0125, Tmk, Thymidylate kinase [Nucleotide trans	7e-04
COG1102	179	COG1102, Cmk, Cytidylate kinase [Nucleotide transp	8e-04

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score =  347 bits (891), Expect = e-123
 Identities = 153/192 (79%), Positives = 173/192 (90%)

Query: 5   GGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE 64
             K PFI FVLGGPGSGKGTQC KIV+ +G  HLSAG+LLRREIASNSE+G  ILNTIKE
Sbjct: 39  KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKE 98

Query: 65  GKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124
           GKIVPSEVTV LIQKEMESSD+ KFLIDGFPR+EENR AFERI+GAEP++VLFFDCPEEE
Sbjct: 99  GKIVPSEVTVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEE 158

Query: 125 MVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
           MV RVLNRN+GRVDDNIDT++KRL+VF ALNLPVI+YY+++GKLYTINAVGTVDEIFEQV
Sbjct: 159 MVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQV 218

Query: 185 RAVFAALKLVTE 196
           R +FAA + + E
Sbjct: 219 RPIFAACEAMKE 230

Length = 234

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score =  281 bits (720), Expect = 6e-98
 Identities = 106/183 (57%), Positives = 136/183 (74%), Gaps = 4/183 (2%)

Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           + FVLGGPGSGKGTQCAKIV+N+G THLSAG+LLR EI S SE G  I + IK GKIVPS
Sbjct: 1   VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPS 60

Query: 71  EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNR 128
           EVTV L++  +++  SKKFLIDGFPR+EEN  A+E++M        VLFFDCPEE M+ R
Sbjct: 61  EVTVKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120

Query: 129 VLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
           +L R +  GRVDDNI++++KR + +    LPVI +Y  +GK+  INA G+V+E+FE V  
Sbjct: 121 LLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEK 180

Query: 187 VFA 189
           +FA
Sbjct: 181 IFA 183

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  200 bits (512), Expect = 4e-66
 Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 24/192 (12%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            +LG PGSGKGTQ  ++ K YGL H+S G+LLR EIAS +E G      I  GK+VP E+
Sbjct: 3   LLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEI 62

Query: 73  TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRV 129
            + L+++ ++  D KK F++DGFPR+ +   A + ++  G +PD V+  D P+E ++ R+
Sbjct: 63  VIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERI 122

Query: 130 LNRNE---------------------GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKL 168
           L R                        R DDN +T++KRL+V+K    P+I+YY ++GKL
Sbjct: 123 LGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKL 182

Query: 169 YTINAVGTVDEI 180
             I+  G +DE+
Sbjct: 183 VEIDGSGDIDEV 194

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score =  199 bits (507), Expect = 2e-65
 Identities = 91/178 (51%), Positives = 120/178 (67%), Gaps = 5/178 (2%)

Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           I F++GGPGSGKGTQC KIV+ YG THLS G+LLR E+AS SE G  +   ++ G +VP 
Sbjct: 5   IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPL 64

Query: 71  EVTVSLIQKEMESS--DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
           +  + L++  M ++   SK FLIDG+PR  +    FER +G  P +VL+FDC E+ MV R
Sbjct: 65  DTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIG-PPTLVLYFDCSEDTMVKR 123

Query: 129 VLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
           +L R E  GRVDDN  T++KRL+ +     PVI YY  +GKL  INA GTVD++F QV
Sbjct: 124 LLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQV 181

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  179 bits (456), Expect = 9e-58
 Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 32/186 (17%)

Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           +LG PG+GKGTQ  +IV+ YG+ HLS G+LLR E+ S +E G      + +G++VP EV 
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 74  VSLIQKEMESSD-SKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVL 130
           + L+++ +E +D    FL+DGFPR+     A E ++  G + D V+ FD P+E +V R+ 
Sbjct: 61  IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLT 120

Query: 131 NRNE-----------------------------GRVDDNIDTVRKRLQVFKALNLPVINY 161
            R                                R DDN +TV+KRL+ +     PVI+Y
Sbjct: 121 GRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVIDY 180

Query: 162 YARRGK 167
           Y ++GK
Sbjct: 181 YKKKGK 186

Length = 186

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  173 bits (440), Expect = 8e-55
 Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 33/210 (15%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG+GKGTQ   I + YG+ H+S G++LR  + + +E G    + +  G++VP E+ +
Sbjct: 6   LGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVI 65

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVL 130
            L+++ +   D K  FL+DGFPR+     A + +   +G + D V+  D P+EE+V R+ 
Sbjct: 66  GLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLS 125

Query: 131 NR----NEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINY 161
            R      GR                          DDN +TVRKRL+V+     P+I+Y
Sbjct: 126 GRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDY 185

Query: 162 YARRGKLYTINAVGTVDEIFEQVRAVFAAL 191
           Y ++GKL  I+  G++DE+F  +      L
Sbjct: 186 YKKKGKLKKIDGTGSIDEVFADILKALGKL 215

Length = 215

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  168 bits (429), Expect = 2e-53
 Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 31/205 (15%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PGSGKGTQ  +I + YGL H+S G+LLR EI + +  G      +++G++VP E+  
Sbjct: 5   LGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVN 64

Query: 75  SLIQKEMESSD--SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132
            L+++ +  +      F++DGFPR+     A + ++  + D V+  D P+EE+V R+  R
Sbjct: 65  QLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGR 124

Query: 133 ----NEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYYA 163
               + GRV                         DD  + V+KRL+V+K    P+I+YY 
Sbjct: 125 RICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYK 184

Query: 164 RRGKLYTINAVGTVDEIFEQVRAVF 188
           +RG L  I+  G +DE+++++    
Sbjct: 185 KRGILVQIDGNGPIDEVWKRILEAL 209

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  151 bits (383), Expect = 9e-47
 Identities = 65/177 (36%), Positives = 103/177 (58%), Gaps = 10/177 (5%)

Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           +LG PG+GK T   K+ K  GL HL  G++LR  IA  +E G  I   I +G++VP E+ 
Sbjct: 5   ILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIV 64

Query: 74  VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRV 129
             L+++ ++ +D K  F++DGFPR+     A +R+   +G   D+V+  D PEE ++ R+
Sbjct: 65  NGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERL 124

Query: 130 LNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
           L R   R DDN +TV+KRL+V+     P+I YY+      TI+  G ++E+   +  
Sbjct: 125 LGRRV-REDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILK 175

Length = 178

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score =  147 bits (373), Expect = 4e-45
 Identities = 63/178 (35%), Positives = 107/178 (60%), Gaps = 5/178 (2%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG+GKGTQ  ++ +  GL  LS G++LR  +A  +E G      ++ G +VP E+ +
Sbjct: 12  LGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELIL 71

Query: 75  SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLN 131
           +LI+ E+   +  + + DGFPR+     A +R++   GA    V+  + P+EE++ R++ 
Sbjct: 72  ALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVE 131

Query: 132 R--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAV 187
           R   EGR DDN +TVR+R QV++    P+++YY  RG L  ++ +GT DE++ ++   
Sbjct: 132 RARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKA 189

Length = 191

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score =  133 bits (336), Expect = 1e-39
 Identities = 56/180 (31%), Positives = 105/180 (58%), Gaps = 6/180 (3%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG+GKGTQ   + ++  + H+S G++LR+ I   +  G      + +G++VP ++ +
Sbjct: 7   LGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVL 66

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVL 130
            L+Q+ ++  D+   +++DGFPR     A  + +   +G   + V+  D P++ +V R+L
Sbjct: 67  DLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLL 126

Query: 131 NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190
            R  GR DD  + +R+RL+V++    P+I+YY  R KL TI+   +V+ +  +++A  A 
Sbjct: 127 AR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALAP 184

Length = 184

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score =  127 bits (320), Expect = 3e-37
 Identities = 60/178 (33%), Positives = 109/178 (61%), Gaps = 5/178 (2%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG+GKGTQ A++   +GL HLS G+LLR E+A+ S  G      +  G++V   + +
Sbjct: 8   LGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVL 67

Query: 75  SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGA--EP-DIVLFFDCPEEEMVNRVLN 131
           ++++ ++++ +S  +L+DGFPR+     A E ++    +P + V+  +  +  ++ R+L 
Sbjct: 68  AIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLA 127

Query: 132 RNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189
           R  GR DDN   +R RL+V++    P+I++Y +RG L ++ A G+++ I E++  V A
Sbjct: 128 R--GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVLA 183

Length = 183

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score =  116 bits (292), Expect = 4e-33
 Identities = 55/172 (31%), Positives = 97/172 (56%), Gaps = 6/172 (3%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           +G PG+GKGTQ   + +   +  +S G++LR  + + +  G      +  G +VP  V +
Sbjct: 7   MGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVI 66

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVL 130
            +I+  +  +D K  FL+DGFPR+ E   A + ++   G   D  +  + P+ E++ R+L
Sbjct: 67  GIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLL 126

Query: 131 NR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEI 180
            R   EGR DDN  T++ RL  +    LP++++YA + KL  +N VG+++E+
Sbjct: 127 GRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEV 178

Length = 186

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score =  112 bits (283), Expect = 1e-31
 Identities = 57/183 (31%), Positives = 106/183 (57%), Gaps = 9/183 (4%)

Query: 16  GGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS 75
           G P +GKGTQ  ++V+  G+  LS G++LR  IAS SE G  +   +  G++V  E+ ++
Sbjct: 7   GPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIA 66

Query: 76  LIQKEM-ESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLN 131
           LI++ + E+  +   + DGFPR+     A ++++   G + D+V+     +E ++ R++ 
Sbjct: 67  LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVK 126

Query: 132 R--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189
           R   +GR DDN +    RL  + A   P++ YYA +GKL  ++ +G+++ +     ++ A
Sbjct: 127 RFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAV---AASIDA 183

Query: 190 ALK 192
           AL+
Sbjct: 184 ALE 186

Length = 188

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score =  108 bits (271), Expect = 1e-29
 Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 39/208 (18%)

Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR----REIAS-NSEYGTTILNTIKEGKIV 68
           +LG PG+GKGTQ + + + +G+ H++ G+ LR     +I+  ++EY T     +  G++V
Sbjct: 8   LLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTP-GEYMDAGELV 66

Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
           P  V   ++++ +  +D   F++DG+PR+ E     E I   + D+VL+ D  EEE+V+R
Sbjct: 67  PDAVVNEIVEEALSDADG--FVLDGYPRNLEQAEYLESI--TDLDVVLYLDVSEEELVDR 122

Query: 129 VLNR------------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVI 159
           +  R                   EG           R DD  +TVR+RL VF+    PVI
Sbjct: 123 LTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVI 182

Query: 160 NYYARRGKLYTINAVGTVDEIFEQVRAV 187
            +Y  +G L  ++   T DE++  ++  
Sbjct: 183 EHYRDQGVLVEVDGEQTPDEVWADIQDA 210

Length = 215

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score =  109 bits (275), Expect = 4e-29
 Identities = 61/190 (32%), Positives = 105/190 (55%), Gaps = 12/190 (6%)

Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           +LG PG+GKGTQ  ++V+ YG+  LS G++LR  +A+ +  G    + +  G +VP EV 
Sbjct: 5   LLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVV 64

Query: 74  VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEP---DIVLFFDCPEEEMVNRV 129
           V +I   +E  D+   F++DGFPR+     A + ++  +    D V+     E  ++ RV
Sbjct: 65  VGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARV 124

Query: 130 LNR--------NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIF 181
             R         E R DD  + + KRL  ++A   P+++YY+ + KL T++ + T+DE+ 
Sbjct: 125 ETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVT 184

Query: 182 EQVRAVFAAL 191
            ++  V AA+
Sbjct: 185 REIGRVLAAV 194

Length = 333

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score =  105 bits (264), Expect = 7e-27
 Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 30/196 (15%)

Query: 16  GGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS 75
           G P SGKGTQC  IV  +GL H+S G+LLR E+++ ++ G      +  G++VP E+ ++
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 76  LIQKEMESSDSKK--FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR- 132
           ++   +   D+K+  +L+DG+PRS     + E+ +   PDI +  D P+E +++R + R 
Sbjct: 64  MVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRR 122

Query: 133 -----------------NE-------GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKL 168
                            +E        R DD  + V+ RLQ++K     +++ Y+     
Sbjct: 123 LDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMV- 181

Query: 169 YTINAVGTVDEIFEQV 184
             I+     + +FE++
Sbjct: 182 -KIDGNRPKEVVFEEI 196

Length = 505

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score = 93.4 bits (232), Expect = 2e-23
 Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 45/208 (21%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG GKGT  +++ K  G+ H++ G+L+R EI S+   G  +   + +GK+VP E+  
Sbjct: 35  LGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIF 94

Query: 75  SLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
           SL+ K +E+ + +    F++DGFPR+       E +   + D+V+     EE +V + L 
Sbjct: 95  SLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGV--TDIDLVVNLKLREEVLVEKCLG 152

Query: 132 RN----------------------------------------EGRVDDNIDTVRKRLQVF 151
           R                                           R DD  + V+ RL+V+
Sbjct: 153 RRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVY 212

Query: 152 KALNLPVINYYARRGKLYTINAVGTVDE 179
           K  + PV ++Y +RGKL      G + E
Sbjct: 213 KEESQPVEDFYRKRGKLLEFELPGGIPE 240

Length = 261

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score = 88.4 bits (219), Expect = 9e-22
 Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 33/209 (15%)

Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PGSGKGTQ   I   Y L HL+ G++LR  +A+ +  G      + +G++V  ++ 
Sbjct: 36  LIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 95

Query: 74  VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCP----EEEM 125
           V +I + M+    +K F++DGFPR+       + ++   GA+ D VL F       EE +
Sbjct: 96  VGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERI 155

Query: 126 VNRVLNRNEGRV-------------------------DDNIDTVRKRLQVFKALNLPVIN 160
             R ++ + GR                          DD    ++ RL+ F     PVI+
Sbjct: 156 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 215

Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFA 189
           YYA++G +  ++A     E+  +V+   +
Sbjct: 216 YYAKKGVVANLHAEKPPKEVTAEVQKALS 244

Length = 244

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 79.9 bits (197), Expect = 9e-19
 Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 36/198 (18%)

Query: 15  LGGPGSGKGTQCAKIVKN-YGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           LG PGSGKGT  AKI+ N     H+S G+L R  I +++  G  I   ++ G++VP  +T
Sbjct: 6   LGPPGSGKGT-IAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSIT 64

Query: 74  VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDI-VLFFDCPEEEMVNRVLN 131
           + +++ ++ +  +   F++DGFPR+     A ++ +   P+I ++ F   EE ++ R+  
Sbjct: 65  IKIVEDKINTIKNNDNFILDGFPRNINQAKALDKFL---PNIKIINFLIDEELLIKRLSG 121

Query: 132 R------------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINYY 162
           R                   +G           R DD  ++++ RLQ +K    P+I +Y
Sbjct: 122 RRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFY 181

Query: 163 ARRGKLYTINAVGTVDEI 180
           ++  +L  I+A   +DE+
Sbjct: 182 SKCNRLNNIDASKDIDEV 199

Length = 211

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 75.5 bits (186), Expect = 5e-17
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 17  GP-GSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS 75
           GP GSGKGTQ A + K Y L H+ +G + R  I   +E G      I  G +VP ++T+ 
Sbjct: 7   GPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIP 66

Query: 76  LIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEP---DIVLFFDCPEEEMVNRVLNR 132
           +I + ++      +L+DGFPR++         +  E    D V+    P E   NR++ R
Sbjct: 67  MILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGR 126

Query: 133 NEGRVDDN 140
              + D+N
Sbjct: 127 RLCKNDNN 134

Length = 223

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 70.6 bits (173), Expect = 4e-15
 Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 44/202 (21%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           KGP    + G PG GKGT    + K   L H++ G +LR EI + +  G  I   +  G 
Sbjct: 4   KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGN 63

Query: 67  IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE 123
           +VP  + +++++ E+          F++DGFPR+   +   E       D+ +    P  
Sbjct: 64  LVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNL--KQCKELGKITNIDLFVNIYLPRN 121

Query: 124 EMVNRVLNRN---------------------------------------EGRVDDNIDTV 144
            ++ ++L R                                        + R DD  + V
Sbjct: 122 ILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIV 181

Query: 145 RKRLQVFKALNLPVINYYARRG 166
             RL  +++ N P+I ++    
Sbjct: 182 AHRLNTYESTNSPIIQFFKNEN 203

Length = 229

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 16/126 (12%)

Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           I  + G PGSGK T   K+ +  G+  +S  +LLR E           L  + +G++   
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREE----------GLAELDDGELDDI 50

Query: 71  EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL 130
           ++ + L+++ ++    ++++IDG       R +   +   E D+V+F D P      R+L
Sbjct: 51  DIDLELLEEILDELAKQEWVIDG------VRESTLELRLEEADLVVFLDLPLPACRFRLL 104

Query: 131 NRNEGR 136
            R   R
Sbjct: 105 KRRLQR 110

Length = 114

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 16  GGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS-EVTV 74
           G PGSGK T    + +  GL H+SAGE+  RE+A   E G ++    K  +  P  +  +
Sbjct: 7   GPPGSGKTTVARLLAEKLGLKHVSAGEIF-RELA--KERGMSLEEFNKYAEEDPEIDKEI 63

Query: 75  SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE 134
              Q E+ +      +++G       R A   +     D+ ++   P E    R+  R  
Sbjct: 64  DRRQLEI-AEKEDNVVLEG-------RLA-GWMAKDYADLKIWLKAPLEVRAERIAEREG 114

Query: 135 GRVDDNIDTVRKR 147
             V++ ++   +R
Sbjct: 115 ISVEEALEETIER 127

Length = 180

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 17/135 (12%)

Query: 16  GGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS 75
           G PGSGK T    + +   L  +SAG++  RE+A  ++ G  ++  +   +  P E+   
Sbjct: 7   GPPGSGKTTVAKILAEKLSLKLISAGDIF-RELA--AKMGLDLIEFLNYAEENP-EIDKK 62

Query: 76  LIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG 135
           + ++  E +  +K ++      E   A +  I+    D+ ++   P E    R+  R   
Sbjct: 63  IDRRIHEIALKEKNVV-----LESRLAGW--IVREYADVKIWLKAPLEVRARRIAKR--- 112

Query: 136 RVDDNIDTVRKRLQV 150
              +       R + 
Sbjct: 113 ---EGKSLTVARSET 124

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 48/218 (22%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE--LLRREIASNSEYGTTILNTIKE 64
           KG FI    G  G+GK TQ   + +         G   +L RE    +  G  I   +  
Sbjct: 2   KGMFIVIE-GIDGAGKTTQAELLKERL----EERGIKVVLTRE-PGGTPIGEKIRELLLN 55

Query: 65  GKIVPSEVTVSL---------IQKEMESSDSKKFLI--DGFPRS------------EENR 101
           G+   S    +L         +++ ++ +  +  ++  D +  S             +  
Sbjct: 56  GEEKLSPKAEALLFAADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWV 115

Query: 102 AAFER--IMGAEPDIVLFFDCPEEEMVNRV------LNRNEGRVDDNIDTVRKRLQVFKA 153
            A       G +PD+ L+ D P E  + R+       +R E   D+ ++ VR+      A
Sbjct: 116 LALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAA 175

Query: 154 LNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191
                        ++  I+A   ++E+ E++  +    
Sbjct: 176 KF---------PERIIVIDASRPLEEVHEEILKILKER 204

Length = 208

>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 16  GGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS 75
           G PGSGK T   ++ ++ GL  +SAG +  RE+A   E G ++    +  +  P E+   
Sbjct: 7   GLPGSGKTTVARELAEHLGLKLVSAGTIF-REMA--RERGMSLEEFSRYAEEDP-EIDKE 62

Query: 76  LIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG 135
           + +++ E +     +++G        A +  I+    D+ ++   P E    R+  R   
Sbjct: 63  IDRRQKELAKEGNVVLEG------RLAGW--IVREYADLKIWLKAPLEVRAERIAKREGI 114

Query: 136 RVDDNIDTVRKR 147
            VD+ +    +R
Sbjct: 115 DVDEALAETVER 126

Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
PLN02200	234	adenylate kinase family protein	100.0
PLN02674	244	adenylate kinase	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
PLN02459	261	probable adenylate kinase	100.0
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
PRK14532	188	adenylate kinase; Provisional	100.0
PRK14527	191	adenylate kinase; Provisional	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PRK02496	184	adk adenylate kinase; Provisional	100.0
PRK14526	211	adenylate kinase; Provisional	100.0
PRK00279	215	adk adenylate kinase; Reviewed	99.98
PTZ00088	229	adenylate kinase 1; Provisional	99.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.97
PRK14530	215	adenylate kinase; Provisional	99.97
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.96
PLN02842	505	nucleotide kinase	99.96
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.96
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.96
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.9
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.87
PRK13973	213	thymidylate kinase; Provisional	99.87
PRK01184	184	hypothetical protein; Provisional	99.86
PRK13974	212	thymidylate kinase; Provisional	99.86
PLN02924	220	thymidylate kinase	99.85
PRK00698	205	tmk thymidylate kinase; Validated	99.81
PRK13975	196	thymidylate kinase; Provisional	99.81
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.81
PRK07933	213	thymidylate kinase; Validated	99.8
PRK03839	180	putative kinase; Provisional	99.79
PRK08356	195	hypothetical protein; Provisional	99.79
PRK13976	209	thymidylate kinase; Provisional	99.79
PRK06217	183	hypothetical protein; Validated	99.78
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.78
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.78
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.78
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.77
PRK08233	182	hypothetical protein; Provisional	99.77
PLN02422	232	dephospho-CoA kinase	99.77
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.76
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.76
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.75
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.75
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.75
PTZ00451	244	dephospho-CoA kinase; Provisional	99.74
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.73
PRK04040	188	adenylate kinase; Provisional	99.73
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.73
PRK13949	169	shikimate kinase; Provisional	99.73
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.71
PRK08118	167	topology modulation protein; Reviewed	99.71
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.7
PRK03731	171	aroL shikimate kinase II; Reviewed	99.7
PHA02530	300	pseT polynucleotide kinase; Provisional	99.68
PRK06762	166	hypothetical protein; Provisional	99.68
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.67
PRK04182	180	cytidylate kinase; Provisional	99.67
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.67
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.66
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.66
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.66
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.66
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.66
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.65
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.65
PRK13946	184	shikimate kinase; Provisional	99.64
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.64
PRK00131	175	aroK shikimate kinase; Reviewed	99.64
PRK13947	171	shikimate kinase; Provisional	99.62
PRK00625	173	shikimate kinase; Provisional	99.62
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.62
PRK13948	182	shikimate kinase; Provisional	99.62
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.62
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.6
PRK05057	172	aroK shikimate kinase I; Reviewed	99.6
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.6
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.59
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.59
PRK05480	209	uridine/cytidine kinase; Provisional	99.59
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.58
PRK09825	176	idnK D-gluconate kinase; Provisional	99.57
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.57
PRK11545	163	gntK gluconate kinase 1; Provisional	99.56
PRK14738	206	gmk guanylate kinase; Provisional	99.55
PLN02199	303	shikimate kinase	99.55
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.54
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.54
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.54
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.54
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.54
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.52
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.51
PRK07261	171	topology modulation protein; Provisional	99.51
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.5
PRK05541	176	adenylylsulfate kinase; Provisional	99.5
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.48
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.48
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.47
PTZ00301	210	uridine kinase; Provisional	99.47
PRK00023	225	cmk cytidylate kinase; Provisional	99.47
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.47
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.47
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.47
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.47
PRK06547	172	hypothetical protein; Provisional	99.46
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.46
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.45
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.45
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.45
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.45
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.44
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.44
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.43
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.41
PRK06696	223	uridine kinase; Validated	99.39
PRK14737	186	gmk guanylate kinase; Provisional	99.39
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.38
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.38
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	99.38
PRK12338	319	hypothetical protein; Provisional	99.37
PRK03846	198	adenylylsulfate kinase; Provisional	99.37
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.37
PHA03132	580	thymidine kinase; Provisional	99.36
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.36
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.35
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.34
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	99.34
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.33
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.33
PRK07429	327	phosphoribulokinase; Provisional	99.33
PRK00300	205	gmk guanylate kinase; Provisional	99.32
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.32
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.31
PRK07667	193	uridine kinase; Provisional	99.31
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.31
PLN02348	395	phosphoribulokinase	99.3
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.29
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.29
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.29
COG1123	539	ATPase components of various ABC-type transport sy	99.29
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.28
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.27
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.27
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	99.26
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.26
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.25
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.25
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.25
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.24
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.23
PRK00889	175	adenylylsulfate kinase; Provisional	99.22
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.22
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.21
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.2
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.19
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.19
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.19
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.18
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.18
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.17
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.17
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.17
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.16
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.16
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.16
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.15
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.15
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.15
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.15
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.15
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.15
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.14
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.14
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.14
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.14
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.13
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.13
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.13
COG4172	534	ABC-type uncharacterized transport system, duplica	99.12
COG0645	170	Predicted kinase [General function prediction only	99.12
PRK05439	311	pantothenate kinase; Provisional	99.12
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.12
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.11
COG1123	539	ATPase components of various ABC-type transport sy	99.11
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.1
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.1
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.1
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.1
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.1
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.1
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.1
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.1
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.09
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.09
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.09
PRK04220	301	2-phosphoglycerate kinase; Provisional	99.09
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.09
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.08
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	99.08
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.08
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.07
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.07
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.07
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.07
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.06
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.06
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.05
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.05
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.05
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.05
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.05
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.04
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.04
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.04
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.03
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.02
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.02
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.02
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.02
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.02
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.01
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.01
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.01
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.01
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.01
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.01
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.01
PLN02318	656	phosphoribulokinase/uridine kinase	99.01
PRK10938	490	putative molybdenum transport ATP-binding protein	99.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.0
PRK15453	290	phosphoribulokinase; Provisional	99.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.99
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.99
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.99
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.99
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.98
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.98
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.98
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.98
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.98
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.98
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.98
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.98
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.98
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.98
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.98
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.97
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.97
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.97
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.97
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.97
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.97
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.97
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.96
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.96
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.96
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.96
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.96
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.96
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.96
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.96
PLN02772	398	guanylate kinase	98.95
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.95
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.95
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.95
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.95
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.94
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.94
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.94
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.94
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.94
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.94
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.93
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.93
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.93
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.93
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.93
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.93
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.93
COG4988	559	CydD ABC-type transport system involved in cytochr	98.93
PLN03232	1495	ABC transporter C family member; Provisional	98.92
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.92
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.92
cd03246	173	ABCC_Protease_Secretion This family represents the	98.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.92
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.92
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.92
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.92
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.92
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.92
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.92
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.92
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.92
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.92
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.91
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.91
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.91
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.91
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.91
PLN03130	1622	ABC transporter C family member; Provisional	98.91
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.91
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.91
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.91
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.91
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.91
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.91
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.9
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.9
PRK10908	222	cell division protein FtsE; Provisional	98.9
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.9
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.9
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.9
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.9
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.9
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.89
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.89
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.89
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.89
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.89
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.89
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.89
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.89
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.89
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.89
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.88
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.88
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.88
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.88
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.88
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.88
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.87
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.87
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.87
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.87
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.87
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.87
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.86
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.86
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.86
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.86
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.86
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.86
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.86
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.86
COG4987	573	CydC ABC-type transport system involved in cytochr	98.86
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.86
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.86
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.86
PHA03136	378	thymidine kinase; Provisional	98.86
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.86
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.86
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.86
COG4181	228	Predicted ABC-type transport system involved in ly	98.86
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.85
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.85
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.85
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.85
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.85
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.85
PHA00729	226	NTP-binding motif containing protein	98.84
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.84
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.84
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.84
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.84
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.84
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.84
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.84
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.84
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.84
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.83
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.83
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.82
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.82
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.82
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.82
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.82
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.82
COG3709	192	Uncharacterized component of phosphonate metabolis	98.82
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.82
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.82
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.81
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.81
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.81
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.81
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.81
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.81
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.81
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.8
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.8
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.8
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.8
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.79
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.79
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.79
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.79
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.78
PRK13409	590	putative ATPase RIL; Provisional	98.78
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.78
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.78
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.78
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.78
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.77
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.77
PTZ00243	1560	ABC transporter; Provisional	98.77
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.77
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.77
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.76
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.76
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.76
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.76
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.76
PLN03073	718	ABC transporter F family; Provisional	98.75
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.75
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.75
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.75
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.75
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.75
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.75
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.75
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.75
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.75
COG4639	168	Predicted kinase [General function prediction only	98.75
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.74
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.74
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.74
PRK13409	590	putative ATPase RIL; Provisional	98.74
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.74
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.74
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.74
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.74
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	98.73
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.73
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.73
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.73
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.73
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.72
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.72
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.72
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.72
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.72
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.72
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.72
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.71
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.71
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.71
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.71
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.7
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.7
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.7
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.7
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.7
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.7
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.69
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.68
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.68
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.68
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.68
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.68
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.68
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.68
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.68
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.68
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.67
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.67
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.66
PLN03232	1495	ABC transporter C family member; Provisional	98.66
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.66
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.66
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.66
COG0488	530	Uup ATPase components of ABC transporters with dup	98.65
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.65
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.65
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.64
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.64
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.64
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.63
COG0488	530	Uup ATPase components of ABC transporters with dup	98.63
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.63
PRK11147	635	ABC transporter ATPase component; Reviewed	98.62
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.62
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.62
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	98.62
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.62
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.61
PLN02165	334	adenylate isopentenyltransferase	98.61
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.61
PLN03130	1622	ABC transporter C family member; Provisional	98.61
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.61
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.6
COG4559	259	ABC-type hemin transport system, ATPase component	98.59
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.58
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.57

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=3e-36  Score=208.06  Aligned_cols=185  Identities=54%  Similarity=0.939  Sum_probs=174.3

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS   84 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~   84 (196)
                      ..++.+|.+.|+|||||-|+|..+.++||+.|++.|+++|++... +++.+..+++++..|..++...+..++.+.+...
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~   84 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS   84 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence            456789999999999999999999999999999999999999887 8999999999999999999999999999999976


Q ss_pred             CC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC--CCCCcHHHHHHHHHHHHhchHhHHHH
Q 029287           85 DS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG--RVDDNIDTVRKRLQVFKALNLPVINY  161 (196)
Q Consensus        85 ~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (196)
                      .. .++++||||...+|...|.+.+...|++++||||+.+++.+|+..|.+.  |.+++.+.+++|++.|.....+++++
T Consensus        85 ~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~  164 (195)
T KOG3079|consen   85 GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEY  164 (195)
T ss_pred             CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHH
Confidence            65 5599999999999999999998888999999999999999999999766  88999999999999999999999999


Q ss_pred             HHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          162 YARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       162 ~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      |..++.++.|+++.++++|+.++...+..
T Consensus       165 ~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  165 YEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            99999999999999999999999888764

>PLN02200 adenylate kinase family protein

Probab=100.00  E-value=9.4e-35  Score=215.38  Aligned_cols=191  Identities=80%  Similarity=1.260  Sum_probs=175.3

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD   85 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~   85 (196)
                      ++.|++|+|.|+|||||||+|+.|++++|+.+++.|+++++.+...++.+..+.+.+..|..++++.....+.+.+....
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~  119 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD  119 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence            45678999999999999999999999999999999999999998888999999999999999999888888888887655


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      +.+||+||||.+..|+..+.......||.+|+|++|++++.+|+.+|..+|.+++.+.+.+|++.|.....++.++|...
T Consensus       120 ~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~  199 (234)
T PLN02200        120 NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKK  199 (234)
T ss_pred             CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67899999999999999988877778999999999999999999999767788889999999999999999999999888


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHHHhhhhhcC
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVFAALKLVTE  196 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i~~~~~~~~  196 (196)
                      ..++.||+++++++|++.+.+.+...+.|+|
T Consensus       200 ~~~~~IDa~~~~eeV~~~v~~~l~~~~~~~~  230 (234)
T PLN02200        200 GKLYTINAVGTVDEIFEQVRPIFAACEAMKE  230 (234)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHcCCccc
Confidence            8899999999999999999999999988875

>PLN02674 adenylate kinase

Probab=100.00  E-value=6.1e-33  Score=205.01  Aligned_cols=182  Identities=31%  Similarity=0.570  Sum_probs=166.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      +.++.|+|.|+|||||||+++.|+++||+.|++.|++++..+...++.+..+++++..|..+++..+...+.+.+...++
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence            34578889999999999999999999999999999999999999999999999999999999999999999999986553


Q ss_pred             -CcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhccC----------------------------
Q 029287           87 -KKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRNE----------------------------  134 (196)
Q Consensus        87 -~~~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~~----------------------------  134 (196)
                       .+||+||||.+..|...|...+   +..|+.+|+|++|.+++.+|+..|+.                            
T Consensus       109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L  188 (244)
T PLN02674        109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL  188 (244)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence             7899999999999999887654   46899999999999999999998841                            


Q ss_pred             -CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          135 -GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                       .|.+|+.+.+.+|+..|.+...+++++|.+.+.+..||+++++++|+++|...+
T Consensus       189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence             267889999999999999999999999999989999999999999999988765

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=2.5e-32  Score=196.27  Aligned_cols=178  Identities=33%  Similarity=0.648  Sum_probs=160.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      ++.|+++|+|||||||+++.|++++|+.+++.|+++++.+...++.+..+++++..|..+++..+...+.+.+......+
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g   81 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGG   81 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCc
Confidence            35788899999999999999999999999999999999998888999999999999999999999888888877545678


Q ss_pred             EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      ||+||||.+..|...+...   ....|+.+|+|++|++++.+|+..|  +|.+++.+.+.+|+..|.....+++++|.+.
T Consensus        82 ~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~  159 (183)
T PRK14531         82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNEAVIRNRLEVYREKTAPLIDHYRQR  159 (183)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999988877654   3457898999999999999999998  6777889999999999999999999999988


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHH
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      +.++.||+++++++++.++.+.+
T Consensus       160 ~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        160 GLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh
Confidence            88999999999999999987754

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=1.6e-32  Score=210.06  Aligned_cols=184  Identities=33%  Similarity=0.630  Sum_probs=165.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-Cc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS-KK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~-~~   88 (196)
                      |.|+|+|||||||||+++.|++.||+.+++.|++++..+...++.+..+.+++..|..++++.+..++.+.+...++ .+
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G   80 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG   80 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence            35888999999999999999999999999999999999989999999999999999999999999999988876543 78


Q ss_pred             EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhcc--------CCCCCCcHHHHHHHHHHHHhchHh
Q 029287           89 FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRN--------EGRVDDNIDTVRKRLQVFKALNLP  157 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~--------~~~~~~~~~~~~~~~~~~~~~~~~  157 (196)
                      ||+||||.+..|...|...+   ...||++|+||+|++++++|+..|.        ..|.+++.+.+.+|+..|.....+
T Consensus        81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~P  160 (333)
T PRK13808         81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEP  160 (333)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHH
Confidence            99999999999988877654   3589999999999999999999873        146677899999999999999999


Q ss_pred             HHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          158 VINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       158 ~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      ++++|.+...++.||+++++++|+++|...|..++.
T Consensus       161 Ll~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~  196 (333)
T PRK13808        161 LVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA  196 (333)
T ss_pred             HHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence            999999888899999999999999999999988764

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=1.1e-31  Score=199.14  Aligned_cols=180  Identities=32%  Similarity=0.617  Sum_probs=164.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS---   84 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~---   84 (196)
                      .++.|+|.|||||||||+++.|++.||+.+++.|+++|+.+...++.+..+++++..|..+++..+...+.+.+...   
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~  107 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE  107 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999998753   


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC------------------------------
Q 029287           85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE------------------------------  134 (196)
Q Consensus        85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~------------------------------  134 (196)
                      ...+||+||||.+..|...|...  ..++.+|+|++|.+++++|+..|+.                              
T Consensus       108 ~~~g~iLDGFPRt~~Qa~~Le~~--~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~  185 (261)
T PLN02459        108 GESGFILDGFPRTVRQAEILEGV--TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLL  185 (261)
T ss_pred             CCceEEEeCCCCCHHHHHHHHhc--CCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCC
Confidence            34789999999999999998764  3689999999999999999998841                              


Q ss_pred             ----------CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          135 ----------GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       135 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                                .|.+++.+.+.+|+..|.+...++.++|.+.+.++.||+++++++|+++|...+.
T Consensus       186 ~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~  250 (261)
T PLN02459        186 PPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALN  250 (261)
T ss_pred             CCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhc
Confidence                      4678899999999999999999999999999999999999999999999887764

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=100.00  E-value=3e-31  Score=190.96  Aligned_cols=178  Identities=59%  Similarity=1.017  Sum_probs=157.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcEE
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFL   90 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~i   90 (196)
                      +|+|+|+|||||||+|+.|++++|+.+++.++++++.+...++.+..+.+++..|..+++.....++.+.+....+.+||
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            47889999999999999999999999999999999998877888888999999999999998888888888764467899


Q ss_pred             EeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcC
Q 029287           91 IDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRG  166 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (196)
                      +||||.+..|...+...+.  ..|+.+|+|++|++++.+|+.+|..  ++.+++.+.+.+++..|.....++.++|....
T Consensus        81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~  160 (183)
T TIGR01359        81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG  160 (183)
T ss_pred             EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999988887766542  4799999999999999999999853  45667889999999999999999999998888


Q ss_pred             cEEEEeCCCCHhHHHHHHHHHH
Q 029287          167 KLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       167 ~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      .++.||++++++++++++.+.+
T Consensus       161 ~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       161 KVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            8999999999999999987765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=4.4e-31  Score=190.02  Aligned_cols=178  Identities=30%  Similarity=0.648  Sum_probs=160.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~   88 (196)
                      +.|+|.|+|||||||+++.|+++||+.+++.|++++..+....+.+..+..++..|..+++..+...+.+.+.... ..+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            5688899999999999999999999999999999999988888999999999999999999988888888887643 468


Q ss_pred             EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287           89 FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYA  163 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (196)
                      ||+||||.+..|...+...+   ...||.+|+||+|++++.+|+..|.  .+|.+++.+.+.+|+..|.+...+++++|.
T Consensus        82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~  161 (186)
T PRK14528         82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA  161 (186)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999988887654   3579999999999999999999884  467788999999999999999999999999


Q ss_pred             hcCcEEEEeCCCCHhHHHHHHHHH
Q 029287          164 RRGKLYTINAVGTVDEIFEQVRAV  187 (196)
Q Consensus       164 ~~~~~~~I~~~~~~~~v~~~i~~~  187 (196)
                      ..+.++.||+++++++|+..+.+.
T Consensus       162 ~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        162 AQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHh
Confidence            999999999999999999987653

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=1.7e-31  Score=195.20  Aligned_cols=179  Identities=28%  Similarity=0.525  Sum_probs=159.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      |.|+|.|+|||||||+++.|+++|++.+++.++++++.+...++.+..+++++..|..++++.+.+.+.+.+...+..+|
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~   80 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW   80 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence            36888999999999999999999999999999999999888899999999999999999999999999999987667899


Q ss_pred             EEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC-------------------------------C
Q 029287           90 LIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE-------------------------------G  135 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~-------------------------------~  135 (196)
                      |+||||.+..|...|...   ....|+.+|+|++|.+++.+|+..|+.                               .
T Consensus        81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~  160 (223)
T PRK14529         81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELST  160 (223)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCcccc
Confidence            999999999999988765   356899999999999999999998840                               2


Q ss_pred             CCCCc-HHHHHHHHHHHHhc---hHhHHHHHHh-----cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          136 RVDDN-IDTVRKRLQVFKAL---NLPVINYYAR-----RGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       136 ~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      |.+|+ .+.+++|+..|.+.   ..+.+++|.+     .+.++.||+++++++|+++|.+.+
T Consensus       161 R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        161 RADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             CCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            66775 67999999999987   4477889986     677889999999999999987765

>PRK14532 adenylate kinase; Provisional

Probab=100.00  E-value=1.3e-30  Score=188.39  Aligned_cols=179  Identities=30%  Similarity=0.652  Sum_probs=158.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCcE
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKKF   89 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~~   89 (196)
                      .|+|.|+|||||||+++.|++.+|+.+++.|+++++.+...++.+..+++++..|..+++..+...+.+.+.... ..+|
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~   81 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA   81 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence            578899999999999999999999999999999999988888899999999999999999988888888886543 4789


Q ss_pred             EEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           90 LIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      |+|+||.+..|+..+...+   +..||.+|+|++|++++.+|+.+|.  .+|.+++.+.+.+|+..|.....+...+|.+
T Consensus        82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~  161 (188)
T PRK14532         82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAG  161 (188)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988876543   4689999999999999999999884  4677888888999999999888888899988


Q ss_pred             cCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          165 RGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       165 ~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      ...++.||+++++++++++|.+.+.
T Consensus       162 ~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        162 QGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHh
Confidence            7788899999999999999888764

>PRK14527 adenylate kinase; Provisional

Probab=100.00  E-value=1.5e-30  Score=188.41  Aligned_cols=181  Identities=35%  Similarity=0.726  Sum_probs=161.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      .+++|++.|+|||||||+++.|++++|+.+++.|+++++.....++.+....+++..+...+++.....+.+.+...++.
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~   84 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPV   84 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCC
Confidence            46789999999999999999999999999999999999988888888888999999999999998899988888765567


Q ss_pred             cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHH
Q 029287           88 KFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYY  162 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (196)
                      +||+||||.+..|+..+...   .+..++.+++|++|++++.+|+.+|.  .+|.+++.+.+.+|+..|.....++.++|
T Consensus        85 ~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y  164 (191)
T PRK14527         85 RVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYY  164 (191)
T ss_pred             cEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence            79999999998887766553   34678888999999999999999984  35778889999999999999999999999


Q ss_pred             HhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          163 ARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       163 ~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      .+.+.++.||+++++++|+++|...+
T Consensus       165 ~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        165 EARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            99889999999999999999987654

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=2.8e-30  Score=189.55  Aligned_cols=177  Identities=36%  Similarity=0.722  Sum_probs=160.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--CCcE
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD--SKKF   89 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~--~~~~   89 (196)
                      |+|+|+|||||||+++.|+++||+.+++.|+++++.+...++.+..+.+++..|..+++..+...+.+.+....  ..+|
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            77899999999999999999999999999999999988888999999999999999999999999999987632  4789


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CCCCCc
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GRVDDN  140 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~~~~~  140 (196)
                      |+||||.+..|...+...+...|+.+|+|++|.+++.+|+..|..                             .|.+++
T Consensus        82 ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~  161 (210)
T TIGR01351        82 ILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDT  161 (210)
T ss_pred             EEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCC
Confidence            999999999999888876543689999999999999999998841                             367788


Q ss_pred             HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      .+.+.+|+..|.+...++.++|.+.+.++.||+++++++|++.|.+.+
T Consensus       162 ~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       162 EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence            999999999999999999999999888999999999999999988765

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK02496 adk adenylate kinase; Provisional

Probab=100.00  E-value=4.9e-30  Score=184.76  Aligned_cols=178  Identities=31%  Similarity=0.656  Sum_probs=158.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-C
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS-K   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~-~   87 (196)
                      |+.++|+|+|||||||+++.|++.||+.+++.|+++++.....++.+.....++..|...+++.....+.+.+...++ .
T Consensus         1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~   80 (184)
T PRK02496          1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN   80 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence            367889999999999999999999999999999999998888888888899999999999999999998888875443 6


Q ss_pred             cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           88 KFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      +||+||||.+..|...+...   +...|+.+|+|++|++++.+|+..|  ++.+++.+.+.+|+..|.....++.++|.+
T Consensus        81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~  158 (184)
T PRK02496         81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRD  158 (184)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999998887766553   3467999999999999999999998  566678899999999999999999999988


Q ss_pred             cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          165 RGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       165 ~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      ...++.||+++++++|+++|...+
T Consensus       159 ~~~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        159 RQKLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHh
Confidence            888999999999999999988765

>PRK14526 adenylate kinase; Provisional

Probab=100.00  E-value=2.2e-30  Score=188.93  Aligned_cols=178  Identities=27%  Similarity=0.560  Sum_probs=159.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCcE
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKKF   89 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~~   89 (196)
                      .|+|+|+|||||||+++.|++.+++.+++.|+++++.....++.+..+++++..|..+++..+.+++.+.+.... ..+|
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~   81 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF   81 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence            578899999999999999999999999999999999988888999999999999999999999999999987643 4789


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-----------------------------CCCCCCc
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-----------------------------EGRVDDN  140 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-----------------------------~~~~~~~  140 (196)
                      |+||||.+..|...+...+.  ...+|+|++|++++.+|+..|.                             ..|.+++
T Consensus        82 ilDGfPR~~~Qa~~l~~~~~--~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~  159 (211)
T PRK14526         82 ILDGFPRNINQAKALDKFLP--NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK  159 (211)
T ss_pred             EEECCCCCHHHHHHHHHhcC--CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence            99999999999988877432  2456889999999999999884                             1477889


Q ss_pred             HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      .+.+.+|+..|.+...++.++|...+.+..||+++++++|+++|.+.+.+
T Consensus       160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            99999999999999999999999988899999999999999999888765

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.98  E-value=4.6e-30  Score=189.07  Aligned_cols=181  Identities=36%  Similarity=0.743  Sum_probs=161.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-Cc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS-KK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~-~~   88 (196)
                      |.|+|.|+|||||||+++.|+++||+.+++.++++++.+...++.+..+++++..|..+++..+...+.+.+....+ .+
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g   80 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG   80 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence            36888999999999999999999999999999999999888889999999999999999999999999988876443 48


Q ss_pred             EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CC
Q 029287           89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GR  136 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~  136 (196)
                      ||+||||.+..|...+...   ....|+.+|+|++|.+++.+|+..|..                             .|
T Consensus        81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r  160 (215)
T PRK00279         81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR  160 (215)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence            9999999999988888644   345789999999999999999998842                             46


Q ss_pred             CCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          137 VDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      .+++.+.+.+|+..|.....++.++|...+.++.||+++++++|++++.+.+..
T Consensus       161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            677899999999999999999999999988899999999999999999887754

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.97  E-value=1.8e-29  Score=186.11  Aligned_cols=178  Identities=26%  Similarity=0.566  Sum_probs=159.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc--C-
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES--S-   84 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~--~-   84 (196)
                      .||.|+|+|||||||||+++.|++.||+.+++.|+++++.....++.+..+++++..|..+++..+...+.+.+..  . 
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence            4678999999999999999999999999999999999999888889999999999999999999999998888875  2 


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-------------------------------
Q 029287           85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-------------------------------  133 (196)
Q Consensus        85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-------------------------------  133 (196)
                      ...+||+||||.+..|...+...  ..|+.+++|++|.+++++|+..|+                               
T Consensus        85 ~~~g~iLDGfPRt~~Qa~~l~~~--~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~  162 (229)
T PTZ00088         85 CFKGFILDGFPRNLKQCKELGKI--TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCE  162 (229)
T ss_pred             cCceEEEecCCCCHHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccc
Confidence            34789999999999999888754  379999999999999999999874                               


Q ss_pred             --------CCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCc-EEEE---eCCCCHhHHHHHHHHH
Q 029287          134 --------EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGK-LYTI---NAVGTVDEIFEQVRAV  187 (196)
Q Consensus       134 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I---~~~~~~~~v~~~i~~~  187 (196)
                              ..|.+++.+.+.+|+..|.+...++.++|...+. ++.+   |+++++++|.+.|...
T Consensus       163 ~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  228 (229)
T PTZ00088        163 GCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR  228 (229)
T ss_pred             ccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence                    1466778999999999999999999999999887 8776   7999999999887653

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.97  E-value=4e-28  Score=175.34  Aligned_cols=181  Identities=50%  Similarity=0.881  Sum_probs=153.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES--SDSK   87 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~--~~~~   87 (196)
                      .+|+|+|+|||||||+++.|++.+|+.+++.|+++++.+....+.+..++..+..+...+...+...+...+..  ..+.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSK   83 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCC
Confidence            57888999999999999999999999999999999988777777777888888888777777777776666553  2457


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      +||+|+||.+..|...+...+ ..|+.+|+|++|++++.+|+.+|.  .+|.+++.+.+.+|+..|.....+..++|...
T Consensus        84 ~~i~dg~~~~~~q~~~~~~~~-~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~  162 (188)
T TIGR01360        84 GFLIDGYPREVKQGEEFERRI-GPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETK  162 (188)
T ss_pred             eEEEeCCCCCHHHHHHHHHcC-CCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence            899999999988887776654 479999999999999999999885  35677788899999999888888888888777


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ..++.||++++++++.++|...++.+
T Consensus       163 ~~~~~id~~~~~~~v~~~i~~~l~~~  188 (188)
T TIGR01360       163 GKLRKINAEGTVDDVFLQVCTAIDKL  188 (188)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhcC
Confidence            78889999999999999998887643

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14530 adenylate kinase; Provisional

Probab=99.97  E-value=3.2e-28  Score=179.29  Aligned_cols=175  Identities=33%  Similarity=0.644  Sum_probs=149.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH-----hcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI-----ASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD   85 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~   85 (196)
                      .|+|+|+|||||||+++.|++.||+.+++.|+++++..     ......+. ..+++..|..+++......+...+..  
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~--   81 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD--   81 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc--
Confidence            68889999999999999999999999999999999876     23334443 67778888889988888888777653  


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CC
Q 029287           86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GR  136 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~  136 (196)
                      ..+||+||||.+..|...+....  .|+++|+||+|++++.+|+.+|..                             .|
T Consensus        82 ~~~~IldG~pr~~~q~~~l~~~~--~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R  159 (215)
T PRK14530         82 ADGFVLDGYPRNLEQAEYLESIT--DLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQR  159 (215)
T ss_pred             CCCEEEcCCCCCHHHHHHHHHhc--CCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCC
Confidence            46899999999998887776532  689999999999999999988741                             35


Q ss_pred             CCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          137 VDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      .+++.+.+++|+..|.....++.++|.+.+.+..||+++++++|++.+...+..
T Consensus       160 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        160 DDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            667899999999999999999999999888888999999999999999887753

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.96  E-value=3.1e-27  Score=171.54  Aligned_cols=170  Identities=42%  Similarity=0.818  Sum_probs=150.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CCCcE
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DSKKF   89 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~~~~   89 (196)
                      .|+|+|+|||||||+++.|++.||+.+++.++++++......+.+..+.+++..+...++......+...+... ...+|
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~   80 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF   80 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence            37889999999999999999999999999999999988888888888999998888888888888888888754 34789


Q ss_pred             EEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhccC---------------------CCCCCcHHHHHH
Q 029287           90 LIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRNE---------------------GRVDDNIDTVRK  146 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~~---------------------~~~~~~~~~~~~  146 (196)
                      |+|+||.+..|...+.....  ..|+++|+|++|++++.+|+.+|..                     .|.+++.+.+++
T Consensus        81 vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~  160 (194)
T cd01428          81 ILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKK  160 (194)
T ss_pred             EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHH
Confidence            99999999999888877653  3789999999999999999999853                     266778899999


Q ss_pred             HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHH
Q 029287          147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEI  180 (196)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v  180 (196)
                      |+..|.....++.++|...+.+..||+++++++|
T Consensus       161 R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v  194 (194)
T cd01428         161 RLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV  194 (194)
T ss_pred             HHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence            9999999999999999998899999999998764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PLN02842 nucleotide kinase

Probab=99.96  E-value=7.5e-27  Score=186.97  Aligned_cols=177  Identities=31%  Similarity=0.670  Sum_probs=156.7

Q ss_pred             EEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--CCcEEE
Q 029287           14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD--SKKFLI   91 (196)
Q Consensus        14 i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~--~~~~ii   91 (196)
                      |+|+|||||||+++.|+++||+.+++.+++++..+...++.+..+++++..|..+++..+...+.+.+....  ..+||+
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL   81 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL   81 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence            689999999999999999999999999999999999999999999999999999999999998888887543  467999


Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-------------------------CCCCCcHHHHHH
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-------------------------GRVDDNIDTVRK  146 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-------------------------~~~~~~~~~~~~  146 (196)
                      ||||.+..|...+.. ....||++|+||+|++++.+|+..|..                         .|.+++.+.+++
T Consensus        82 DGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ikk  160 (505)
T PLN02842         82 DGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKA  160 (505)
T ss_pred             eCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHH
Confidence            999999888877765 456899999999999999999988741                         466788999999


Q ss_pred             HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      |+..|.....++..+|..  .+..||+++++++|+++|.+.+..++.
T Consensus       161 RL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~  205 (505)
T PLN02842        161 RLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQK  205 (505)
T ss_pred             HHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999888854  577899999999999999988877654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.96  E-value=9.3e-27  Score=165.39  Aligned_cols=173  Identities=38%  Similarity=0.734  Sum_probs=156.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC-c
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK-K   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~-~   88 (196)
                      |.|+|.|+|||||||+|+.|+++++++|++.|++++......++.+...+.++..+..+++......+...+...++. +
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~   80 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG   80 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence            468889999999999999999999999999999999999999999999999999999999999999999999976543 6


Q ss_pred             EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           89 FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      +|+++||.+..|...+.+.+   +..++.++.+++|.+....|+..|.. |.+++.+.+.+|+..|.....+.+.+|.  
T Consensus        81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~-r~dd~~~~~~~R~~~y~~~~~pli~~y~--  157 (178)
T COG0563          81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV-REDDNEETVKKRLKVYHEQTAPLIEYYS--  157 (178)
T ss_pred             EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc-cccCCHHHHHHHHHHHHhcccchhhhhe--
Confidence            99999999999998888753   35889999999999999999999842 6788999999999999999999999987  


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHH
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                         ..||+.++++++++++.+.+
T Consensus       158 ---~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         158 ---VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             ---eeccCCCCHHHHHHHHHHhh
Confidence               67999999999999987654

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.96  E-value=7.1e-27  Score=163.13  Aligned_cols=146  Identities=42%  Similarity=0.888  Sum_probs=130.1

Q ss_pred             EEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CCCcEEEe
Q 029287           14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DSKKFLID   92 (196)
Q Consensus        14 i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~~~~iid   92 (196)
                      |.|||||||||+|+.|+++||+.+++.++++++.+...++.+..+++.+..|..++++.+..++...+... ...+||+|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999876 45899999


Q ss_pred             CCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcC
Q 029287           93 GFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRG  166 (196)
Q Consensus        93 ~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (196)
                      |||.+..|...|...   ....|+.+|+|++|.+.+.+|+.+       ++.+.+++|+..|.....++.++|.+.+
T Consensus        81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g  150 (151)
T PF00406_consen   81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-------DNEEVIKKRLEEYRENTEPILDYYKEQG  150 (151)
T ss_dssp             SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999988873   356899999999999999999987       4789999999999999999999998754

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.90  E-value=4e-22  Score=144.65  Aligned_cols=183  Identities=38%  Similarity=0.675  Sum_probs=161.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS-   86 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~-   86 (196)
                      ++...++.|+|||||+|++..+++.|+..|+..|++.|+.+...++.+....+.+..|..+++..++..+...+....+ 
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            3578888999999999999999999999999999999999999999999999999999999999999977767776533 


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-----------------------------CCCC
Q 029287           87 KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-----------------------------EGRV  137 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-----------------------------~~~~  137 (196)
                      .+|++|+||++..|...+.. ....+|.+|.|++|.+.+.+|+..|.                             ..|.
T Consensus        94 ~~~ildg~Prt~~qa~~l~~-~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~  172 (235)
T KOG3078|consen   94 KGFILDGFPRTVQQAEELLD-RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE  172 (235)
T ss_pred             cccccCCCCcchHHHHHHHH-ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence            78999999999887777444 45589999999999999999999884                             1466


Q ss_pred             CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          138 DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +|+.+.++.|+..|.+...+..++|..++.+..+++.. .++|+..+...+....
T Consensus       173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~  226 (235)
T KOG3078|consen  173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKV  226 (235)
T ss_pred             cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhh
Confidence            78899999999999999999999999999888788887 8889888887776543

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.87  E-value=5.5e-21  Score=138.46  Aligned_cols=174  Identities=19%  Similarity=0.309  Sum_probs=113.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-CCCCHH--------HHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-KIVPSE--------VTVSLIQ   78 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--------~~~~~i~   78 (196)
                      +.++|+|+|..||||||+++.|++++.-..++  .++.++ +.+++.+..+++.+.++ ......        ...+++.
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~--v~~trE-P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~   78 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIK--VVLTRE-PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE   78 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEeC-CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999998322221  122233 44478899999988876 233221        1123333


Q ss_pred             HHHhc--CCCCcEEEeCCCCCHHHHHH---------HHH--HhCC---CCcEEEEeecChHHHHHHHhhccCC--CCCCc
Q 029287           79 KEMES--SDSKKFLIDGFPRSEENRAA---------FER--IMGA---EPDIVLFFDCPEEEMVNRVLNRNEG--RVDDN  140 (196)
Q Consensus        79 ~~l~~--~~~~~~iid~~~~~~~~~~~---------~~~--~~~~---~p~~~i~ld~~~~~~~~Rl~~r~~~--~~~~~  140 (196)
                      +....  ..+..+|+|+|..+......         +..  .+.+   .||+++|||+|+++..+|+.+|...  +.+ .
T Consensus        79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E-~  157 (208)
T COG0125          79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFE-K  157 (208)
T ss_pred             HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhh-h
Confidence            33332  24578899999877433321         111  1333   8999999999999999999998532  111 1


Q ss_pred             HH--HHHHHHHHHHhchHhHHHHHHhc--CcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          141 ID--TVRKRLQVFKALNLPVINYYARR--GKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       141 ~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      .+  .+++..+.|...        ++.  ..+++||++.++++|.++|.+.+...+.
T Consensus       158 ~~~~f~~kvr~~Y~~l--------a~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~  206 (208)
T COG0125         158 EDDEFLEKVREGYLEL--------AAKFPERIIVIDASRPLEEVHEEILKILKERLG  206 (208)
T ss_pred             HHHHHHHHHHHHHHHH--------HhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence            11  233333444443        333  3589999999999999999998877654

>PRK13973 thymidylate kinase; Provisional

Probab=99.87  E-value=5.1e-20  Score=135.35  Aligned_cols=170  Identities=24%  Similarity=0.338  Sum_probs=107.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCC--CC------------CHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGK--IV------------PSE   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~------------~~~   71 (196)
                      .++|+|+|++||||||+++.|++++   |..++..     +. +...+.+..+++.+..+.  ..            ...
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~-----~~-p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~   76 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT-----RE-PGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDD   76 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE-----EC-CCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            3788889999999999999999999   7666543     00 112223334444333211  11            111


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHH------------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC---
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEE------------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE---  134 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~------------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~---  134 (196)
                      .....+...+.  .+..+|+|+|..+..            +...+...  -.+.||++||||+|++++.+|+.+|..   
T Consensus        77 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~  154 (213)
T PRK13973         77 HVEEVIRPALA--RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDT  154 (213)
T ss_pred             HHHHHHHHHHH--CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCc
Confidence            22233455554  356788999885421            22222221  126899999999999999999998842   


Q ss_pred             -CCCC-CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          135 -GRVD-DNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       135 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                       ++.+ ++.+.++++...|....    +.  .+..+.+||+++++++|.++|...+...+
T Consensus       155 ~~~~e~~~~~~~~~~~~~y~~l~----~~--~~~~~~~Ida~~~~e~V~~~I~~~i~~~~  208 (213)
T PRK13973        155 PDRFEKEDLAFHEKRREAFLQIA----AQ--EPERCVVIDATASPEAVAAEIWAAVDQRL  208 (213)
T ss_pred             cCchhhchHHHHHHHHHHHHHHH----Hh--CCCcEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence             1332 23455556666666542    21  23467889999999999999999887654

>PRK01184 hypothetical protein; Provisional

Probab=99.86  E-value=4.6e-19  Score=127.60  Aligned_cols=173  Identities=23%  Similarity=0.340  Sum_probs=111.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CCh-----hhHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSE-----YGTTILNTIKEGKIVPSEVTVSLIQKEME   82 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~~~i~~~l~   82 (196)
                      |++|+|+|+|||||||+++ +++.+|+.+++.|+++++.... ..+     .+....+....   +........+...+.
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~   76 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIR   76 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHH
Confidence            3689999999999999987 6788899999999999887532 211     23323322211   111222233334444


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhchHhHHH
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD--NIDTVRKRLQVFKALNLPVIN  160 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  160 (196)
                      ......+|+|++ ....+...+...+. .+..+|++++|++.+.+|+..|.  +.++  +.+.+.++......+..  .+
T Consensus        77 ~~~~~~vvidg~-r~~~e~~~~~~~~~-~~~~~i~v~~~~~~~~~Rl~~R~--~~~d~~~~~~~~~r~~~q~~~~~--~~  150 (184)
T PRK01184         77 EKGDEVVVIDGV-RGDAEVEYFRKEFP-EDFILIAIHAPPEVRFERLKKRG--RSDDPKSWEELEERDERELSWGI--GE  150 (184)
T ss_pred             hcCCCcEEEeCC-CCHHHHHHHHHhCC-cccEEEEEECCHHHHHHHHHHcC--CCCChhhHHHHHHHHHHHhccCH--HH
Confidence            444577899998 56666555554443 46678999999999999999883  3322  45666666554332222  11


Q ss_pred             HHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       161 ~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      .+ ..+. ++|+++++.+++..++...+..+..
T Consensus       151 ~~-~~ad-~vI~N~~~~~~l~~~v~~~~~~~~~  181 (184)
T PRK01184        151 VI-ALAD-YMIVNDSTLEEFRARVRKLLERILR  181 (184)
T ss_pred             HH-HhcC-EEEeCCCCHHHHHHHHHHHHHHHhc
Confidence            22 1222 4577888999999999988877654

>PRK13974 thymidylate kinase; Provisional

Probab=99.86  E-value=5.8e-20  Score=134.95  Aligned_cols=176  Identities=20%  Similarity=0.238  Sum_probs=118.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcee---chhHHHHHHHhcCChhhHHHHHHhhcC--CCCCHHHH---------HH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHL---SAGELLRREIASNSEYGTTILNTIKEG--KIVPSEVT---------VS   75 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~---------~~   75 (196)
                      .+|+++|++||||||+++.|++.+.....   ....+..+ .+.+++.+..+++++...  ....+...         .+
T Consensus         4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~-~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~   82 (212)
T PRK13974          4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITR-EPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ   82 (212)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeee-CCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence            68899999999999999999998842111   01111112 234567888899988632  22222211         11


Q ss_pred             H----HHHHHhcCCCCcEEEeCCCCCHHH------------HHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCC
Q 029287           76 L----IQKEMESSDSKKFLIDGFPRSEEN------------RAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRV  137 (196)
Q Consensus        76 ~----i~~~l~~~~~~~~iid~~~~~~~~------------~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~  137 (196)
                      .    +...+.  .+..+|+|+|..+...            ...+...  ....||++||||+|++++.+|+..|.    
T Consensus        83 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~----  156 (212)
T PRK13974         83 HVSKIIRPALE--NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK----  156 (212)
T ss_pred             HHHHHHHHHHH--CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc----
Confidence            1    222222  3557788887655221            1222221  23579999999999999999998762    


Q ss_pred             CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhhc
Q 029287          138 DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLVT  195 (196)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~~  195 (196)
                      ++   .++++...|.....+...+|.+.+.+..||+++++++|.++|.+.+.+.+..+
T Consensus       157 dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~~~  211 (212)
T PRK13974        157 PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSNK  211 (212)
T ss_pred             cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHhhc
Confidence            22   24556667888888888889888899999999999999999999988765543

>PLN02924 thymidylate kinase

Probab=99.85  E-value=1.9e-19  Score=132.39  Aligned_cols=173  Identities=21%  Similarity=0.264  Sum_probs=110.5

Q ss_pred             cCCCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH----------
Q 029287            4 KGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT----------   73 (196)
Q Consensus         4 ~~~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------   73 (196)
                      .+.+.+++|+|+|.+||||||+++.|+++++...+.+  ...+.+...+..|..+++++..+........          
T Consensus        11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v--~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~   88 (220)
T PLN02924         11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA--ELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWE   88 (220)
T ss_pred             CcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc--eeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            3345568999999999999999999999996544333  1222233456677778887765433322111          


Q ss_pred             -HHHHHHHHhcCCCCcEEEeCCCCCHHHHH--------HHHH--HhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           74 -VSLIQKEMESSDSKKFLIDGFPRSEENRA--------AFER--IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        74 -~~~i~~~l~~~~~~~~iid~~~~~~~~~~--------~~~~--~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                       ...+...+.  .+..+|+|+|..+.....        ++..  ...+.||++||||+|++++.+|...+ ..+. ++.+
T Consensus        89 ~~~~I~pal~--~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~-~~~~-E~~~  164 (220)
T PLN02924         89 KRSLMERKLK--SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYG-GERY-EKLE  164 (220)
T ss_pred             HHHHHHHHHH--CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-cccc-ccHH
Confidence             122333333  467889999987632221        1111  12468999999999999999997532 1222 2344


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      .+++....|...        ++ ..+.+||++.++++|.++|.+.+...
T Consensus       165 ~~~rv~~~Y~~l--------a~-~~~~vIDa~~sieeV~~~I~~~I~~~  204 (220)
T PLN02924        165 FQKKVAKRFQTL--------RD-SSWKIIDASQSIEEVEKKIREVVLDT  204 (220)
T ss_pred             HHHHHHHHHHHH--------hh-cCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            444333444444        32 36788999999999999998887654

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.81  E-value=2.2e-18  Score=126.08  Aligned_cols=173  Identities=20%  Similarity=0.304  Sum_probs=99.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc--CCCCCHHHH-------H----H
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE--GKIVPSEVT-------V----S   75 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~-------~----~   75 (196)
                      .++|+|+|++||||||+++.|++.++.....  ..+.+.+ .....+..+++.+..  ....+....       .    .
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~--~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   79 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRD--VVFTREP-GGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEE   79 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCc--eeEeeCC-CCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999987321100  0111111 123455556665542  111111111       1    1


Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCHHHH------------HHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCC-CCCC-
Q 029287           76 LIQKEMESSDSKKFLIDGFPRSEENR------------AAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEG-RVDD-  139 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~~~~~~~------------~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~-~~~~-  139 (196)
                      .+...+  ..+..+|+|+|..+....            ..+...+  .+.||++|||++|++++.+|+.+|... +.+. 
T Consensus        80 ~i~~~l--~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~  157 (205)
T PRK00698         80 VIKPAL--ARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQE  157 (205)
T ss_pred             HHHHHH--HCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhh
Confidence            122222  235678999887653211            1222222  157999999999999999999998421 1111 


Q ss_pred             cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      ..+.++.....|....    .  .....+++||++++++++.++|.+.+.+++
T Consensus       158 ~~~~~~~~~~~y~~~~----~--~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~  204 (205)
T PRK00698        158 GLDFFERVREGYLELA----E--KEPERIVVIDASQSLEEVHEDILAVIKAWL  204 (205)
T ss_pred             hHHHHHHHHHHHHHHH----H--hCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence            1222222222333321    1  123467889999999999999999887765

>PRK13975 thymidylate kinase; Provisional

Probab=99.81  E-value=1e-17  Score=121.80  Aligned_cols=166  Identities=16%  Similarity=0.247  Sum_probs=100.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHH-----------HHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV-----------TVSLI   77 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~i   77 (196)
                      .++|+|+|++||||||+++.|+++++......        +.+...+..+++.+..+ ......           ....+
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i   72 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEI   72 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999998432110        11223344455554433 111110           01112


Q ss_pred             HHHHhcCCCCcEEEeCCCCCHH----------HHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC-CCcHHHHHH
Q 029287           78 QKEMESSDSKKFLIDGFPRSEE----------NRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV-DDNIDTVRK  146 (196)
Q Consensus        78 ~~~l~~~~~~~~iid~~~~~~~----------~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~-~~~~~~~~~  146 (196)
                      ...+.   ...+|+|+|..+..          ++..........||++|||++|++++.+|+..|.  +. .++.+.+++
T Consensus        73 ~~~~~---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~--~~~~~~~~~~~~  147 (196)
T PRK13975         73 EEDLK---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD--KEIFEKKEFLKK  147 (196)
T ss_pred             HHHHc---CCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC--ccccchHHHHHH
Confidence            22222   25688999875421          1111111224579999999999999999999883  22 223455555


Q ss_pred             HHHHHHhchHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287          147 RLQVFKALNLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVFAA  190 (196)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~  190 (196)
                      ....|.....  ...+.....+++||++ .+++++.++|.+.+.+
T Consensus       148 ~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~  190 (196)
T PRK13975        148 VQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKD  190 (196)
T ss_pred             HHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5566666533  1112223467889985 8999999998887754

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.81  E-value=3.4e-18  Score=123.88  Aligned_cols=164  Identities=20%  Similarity=0.274  Sum_probs=108.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH-------------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS-------------   70 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-------------   70 (196)
                      |++|+|+|++||||||+++.|++ +|+.+++.|.+.++...++.+....+.+....+     ..++.             
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   80 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA   80 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence            46899999999999999999998 899999999999988777766666665554321     11221             


Q ss_pred             -----HHHHHHHHHHHh----cCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           71 -----EVTVSLIQKEME----SSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        71 -----~~~~~~i~~~l~----~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                           ..+++.+.+.+.    .... ..++++ .|      +.+...+...+|.++++++|++++.+|+.+|+    ..+
T Consensus        81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e-~p------ll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~----~~s  149 (194)
T PRK00081         81 RKKLEAILHPLIREEILEQLQEAESSPYVVLD-IP------LLFENGLEKLVDRVLVVDAPPETQLERLMARD----GLS  149 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEE-eh------HhhcCCchhhCCeEEEEECCHHHHHHHHHHcC----CCC
Confidence                 233444444433    2222 344555 33      22332333468999999999999999999882    235


Q ss_pred             HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      .+.+..+...+.+..    .. ... .-++|+++++.+++.+++...+.+
T Consensus       150 ~e~~~~ri~~Q~~~~----~~-~~~-ad~vI~N~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        150 EEEAEAIIASQMPRE----EK-LAR-ADDVIDNNGDLEELRKQVERLLQE  193 (194)
T ss_pred             HHHHHHHHHHhCCHH----HH-HHh-CCEEEECCCCHHHHHHHHHHHHHh
Confidence            566666665443321    11 111 226788999999999998887754

>PRK07933 thymidylate kinase; Validated

Probab=99.80  E-value=2.2e-18  Score=126.42  Aligned_cols=168  Identities=13%  Similarity=0.108  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCC--CCCHH------------H
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGK--IVPSE------------V   72 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~------------~   72 (196)
                      |+|+|+|++||||||+++.|++++.   ..++..    +......++.+..+++.+....  ...+.            .
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~   76 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG   76 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence            4899999999999999999999983   222111    0000012334444555544211  10000            0


Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCHHHH-------------HHHHHH------hCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           73 TVSLIQKEMESSDSKKFLIDGFPRSEENR-------------AAFERI------MGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~-------------~~~~~~------~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      ....+...+.  .+..+|+|+|..+....             ..+...      ..+.||++||||+|++++.+|+.+|.
T Consensus        77 ~~~~I~p~l~--~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~  154 (213)
T PRK07933         77 ARDELAGLLA--AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRA  154 (213)
T ss_pred             hHHHHHHHHh--CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhc
Confidence            0122333333  35678999988764211             111111      12479999999999999999999884


Q ss_pred             C-------CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          134 E-------GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       134 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      .       ++.+...+.+++..+.|.....    .. .+..+++||+++++++|.++|.+.+
T Consensus       155 ~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~----~~-~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        155 AQDADRARDAYERDDGLQQRTGAVYAELAA----QG-WGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             cccCCcccccccccHHHHHHHHHHHHHHHH----hc-CCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            2       1122223334333444444421    10 1358888999999999999987754

>PRK03839 putative kinase; Provisional

Probab=99.79  E-value=2.6e-17  Score=118.12  Aligned_cols=152  Identities=16%  Similarity=0.238  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      |+|+|+|+|||||||+++.|++.+|+.+++.|+++++. ........       .+. ..-......+.+.   ..+..+
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-~~~~~~~~-------~~~-~~~~~l~~~~~~~---~~~~~v   68 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-GIGEEKDD-------EME-IDFDKLAYFIEEE---FKEKNV   68 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-CCcccCCh-------hhh-cCHHHHHHHHHHh---ccCCCE
Confidence            36889999999999999999999999999999988653 11000000       000 0011111222221   124558


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEE
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLY  169 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (196)
                      |++++...           ...++.+|+|++|++++.+|+.+|...    ...........+..  ....+.+..+..++
T Consensus        69 IidG~~~~-----------l~~~~~vi~L~~~~~~~~~Rl~~R~~~----~~~~~~~~~~~~~~--~~~~~~~~~r~~~~  131 (180)
T PRK03839         69 VLDGHLSH-----------LLPVDYVIVLRAHPKIIKERLKERGYS----KKKILENVEAELVD--VCLCEALEEKEKVI  131 (180)
T ss_pred             EEEecccc-----------ccCCCEEEEEECCHHHHHHHHHHcCCC----HHHHHHHHHHHHHH--HHHHHHHHhcCCEE
Confidence            89986421           136899999999999999999887311    11111111111111  11234455667888


Q ss_pred             EEeCC-CCHhHHHHHHHHHHHh
Q 029287          170 TINAV-GTVDEIFEQVRAVFAA  190 (196)
Q Consensus       170 ~I~~~-~~~~~v~~~i~~~i~~  190 (196)
                      .||++ .+++++.++|.+.+..
T Consensus       132 ~Id~~~~s~eev~~~I~~~l~~  153 (180)
T PRK03839        132 EVDTTGKTPEEVVEEILELIKS  153 (180)
T ss_pred             EEECCCCCHHHHHHHHHHHHhc
Confidence            99986 6999999998887754

>PRK08356 hypothetical protein; Provisional

Probab=99.79  E-value=1.7e-17  Score=120.47  Aligned_cols=175  Identities=19%  Similarity=0.239  Sum_probs=103.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC-------hhhHHH----HHHhhcCCCCC----HH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS-------EYGTTI----LNTIKEGKIVP----SE   71 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~----~~~l~~~~~~~----~~   71 (196)
                      ..+++|+|+|||||||||+++.|++ +|+.+++.++.+++......       ..+...    .+++..+...+    ..
T Consensus         3 ~~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~   81 (195)
T PRK08356          3 VEKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED   81 (195)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence            3457899999999999999999965 79999999886543222110       111111    12222222222    12


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC--cHHHHHHHHH
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD--NIDTVRKRLQ  149 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~--~~~~~~~~~~  149 (196)
                      .....+.+.+..  ...+++||+ .+..|+..+..    ....+||+++|++++.+|+..|...+...  +.+.+..+..
T Consensus        82 ~~~~~~~~~~~~--~~~ividG~-r~~~q~~~l~~----~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~  154 (195)
T PRK08356         82 ILIRLAVDKKRN--CKNIAIDGV-RSRGEVEAIKR----MGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDE  154 (195)
T ss_pred             HHHHHHHHHhcc--CCeEEEcCc-CCHHHHHHHHh----cCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence            333344444432  335899999 88888877765    23578999999999999999884322111  2333332221


Q ss_pred             HHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          150 VFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      . +..... ...+.+.+.++ |+++++.+++.+++.+++..+.
T Consensus       155 ~-~~~l~~-~~~~~~~aD~v-I~N~~~~e~~~~~i~~~~~~~~  194 (195)
T PRK08356        155 W-EEKLYH-TTKLKDKADFV-IVNEGTLEELRKKVEEILRELS  194 (195)
T ss_pred             H-HHHhhh-hhhHHHhCcEE-EECCCCHHHHHHHHHHHHHHhc
Confidence            1 110000 01112333444 4557899999999998887653

>PRK13976 thymidylate kinase; Provisional

Probab=99.79  E-value=1.9e-17  Score=120.91  Aligned_cols=171  Identities=16%  Similarity=0.189  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc-e-echhHHHHHHHhcCChhhHHHHHHhhcCCCCCH-H-----------HHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT-H-LSAGELLRREIASNSEYGTTILNTIKEGKIVPS-E-----------VTVS   75 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~-~-i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-----------~~~~   75 (196)
                      ++|+++|.+||||||+++.|++.+.-. . ...  ++.+. +.++..+..+++.+........ .           ....
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v--~~~~e-P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~   77 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV--VLTRE-PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK   77 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce--EEeeC-CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999998421 0 000  01111 2345566677776654211211 1           1112


Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCHHHH------------HHHHHH-hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           76 LIQKEMESSDSKKFLIDGFPRSEENR------------AAFERI-MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~~~~~~~------------~~~~~~-~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                      .+...+.  .+..+|+|+|..+....            ..+... -.+.||++||||+|++++.+|+..+  .....+.+
T Consensus        78 ~I~p~l~--~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~--~~e~~~~~  153 (209)
T PRK13976         78 VILPALL--QGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN--GYEFMDLE  153 (209)
T ss_pred             HHHHHHH--CCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc--chhcccHH
Confidence            2333333  46788999998763221            111111 1357999999999999999999644  22222455


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEEEeC---CCC---HhHHHHHHHHHHHhhhh
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYTINA---VGT---VDEIFEQVRAVFAALKL  193 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~---~~~---~~~v~~~i~~~i~~~~~  193 (196)
                      .+++..+.|.....      ..+..+..||+   +++   +++|.++|.+.+..++.
T Consensus       154 ~l~~v~~~Y~~l~~------~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~  204 (209)
T PRK13976        154 FYDKVRKGFREIVI------KNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTK  204 (209)
T ss_pred             HHHHHHHHHHHHHH------hCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHH
Confidence            66555566666522      12345777887   345   99999999888877653

>PRK06217 hypothetical protein; Validated

Probab=99.78  E-value=2.7e-17  Score=118.29  Aligned_cols=161  Identities=16%  Similarity=0.250  Sum_probs=101.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      |+.|+|+|++||||||+++.|++.+|+.+++.|++++..  ...+..          ...+.......+.+.+.  ....
T Consensus         1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~   66 (183)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLR--PREG   66 (183)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHh--cCCC
Confidence            367999999999999999999999999999999887642  111100          11122333344444443  2457


Q ss_pred             EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC---C---CCCc----HHHHHHHHHHHHhc----
Q 029287           89 FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG---R---VDDN----IDTVRKRLQVFKAL----  154 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~---~---~~~~----~~~~~~~~~~~~~~----  154 (196)
                      ||++|++...      ...+...+|.+||||+|++++.+|+.+|...   +   ...+    ...+.++...|...    
T Consensus        67 ~vi~G~~~~~------~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  140 (183)
T PRK06217         67 WVLSGSALGW------GDPLEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEG  140 (183)
T ss_pred             EEEEccHHHH------HHHHHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCc
Confidence            8999887321      1223346899999999999999999988522   1   1111    12233344444432    


Q ss_pred             -hHhHHHHH-Hh-cCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          155 -NLPVINYY-AR-RGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       155 -~~~~~~~~-~~-~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                       .......+ .. ...++.+++..+++++.+++...++
T Consensus       141 ~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~  178 (183)
T PRK06217        141 RSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLA  178 (183)
T ss_pred             ccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHh
Confidence             12212212 22 3677888998999999988877764

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.78  E-value=1.8e-17  Score=120.00  Aligned_cols=162  Identities=17%  Similarity=0.255  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----C-CCCH-------------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----K-IVPS-------------   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-~~~~-------------   70 (196)
                      ++|+|+|++||||||+++.|++.+|+.+++.|++.+.....+.+....+.+.+...     . .++.             
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            57999999999999999999999999999999999888877777766666555321     1 1111             


Q ss_pred             -----HHHHHHHHHHHh----cCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           71 -----EVTVSLIQKEME----SSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        71 -----~~~~~~i~~~l~----~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                           ..+++.+.+.+.    ... ...++++ .|      +.+...+...+|.++++++|++++.+|+.+|+    ..+
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~p------ll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s  150 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IP------LLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLT  150 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eH------HhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCC
Confidence                 123444444333    221 2334444 33      22222233367999999999999999999983    235


Q ss_pred             HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      .+.+..|......    .. ....... ++|+++++.+++.+++...+
T Consensus       151 ~e~~~~ri~~Q~~----~~-~k~~~aD-~vI~N~g~~e~l~~qv~~~l  192 (195)
T PRK14730        151 EEEAEARINAQWP----LE-EKVKLAD-VVLDNSGDLEKLYQQVDQLL  192 (195)
T ss_pred             HHHHHHHHHhCCC----HH-HHHhhCC-EEEECCCCHHHHHHHHHHHH
Confidence            5556655543211    11 1112223 47889999999999987665

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.78  E-value=1.8e-17  Score=120.54  Aligned_cols=167  Identities=19%  Similarity=0.283  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH-------------------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS-------------------   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------   70 (196)
                      ++|+|+|++||||||+++.|++ +|+.+++.|++.++...++.+....+.+.+..+...++                   
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            6899999999999999999997 69999999999988888877776666666644322110                   


Q ss_pred             ----HHHHHHHHHHHh----c--CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           71 ----EVTVSLIQKEME----S--SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        71 ----~~~~~~i~~~l~----~--~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                          ..+++.+...+.    .  ..+..+++-..|      +.+...+...+|.+|++++|++++.+|+.+|+    .-+
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~p------lL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s  150 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMP------LLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----GLD  150 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEee------ceeEcCccccCCeEEEEECCHHHHHHHHHHcC----CCC
Confidence                122333322222    1  112223333233      11111223368999999999999999999883    234


Q ss_pred             HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      .+.+..++..+.+....     ... ..++|+++++++++.+++..+++.+++
T Consensus       151 ~e~~~~ri~~Q~~~~~k-----~~~-ad~vI~N~g~~e~l~~~v~~~~~~~~~  197 (200)
T PRK14734        151 EDDARRRIAAQIPDDVR-----LKA-ADIVVDNNGTREQLLAQVDGLIAEILS  197 (200)
T ss_pred             HHHHHHHHHhcCCHHHH-----HHh-CCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence            56666666555444211     112 225789999999999999988887764

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.78  E-value=2.2e-17  Score=120.91  Aligned_cols=171  Identities=20%  Similarity=0.294  Sum_probs=107.0

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc--------CC-CCCH------
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE--------GK-IVPS------   70 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~-~~~~------   70 (196)
                      ++.+++|+|+|++||||||+++.|.+ +|+.+++.|.+.++...++.+....+...+..        +. .+..      
T Consensus         2 ~~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~   80 (208)
T PRK14731          2 RSLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQV   80 (208)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHH
Confidence            35578999999999999999999997 69999999888776655444322222222110        11 0111      


Q ss_pred             ------------HHHHHHHHHHHh----c--CCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287           71 ------------EVTVSLIQKEME----S--SDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN  131 (196)
Q Consensus        71 ------------~~~~~~i~~~l~----~--~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~  131 (196)
                                  ..+++.+...+.    .  ..+ ..++++ .|      +.+.......+|.+|++++|++++.+|+.+
T Consensus        81 vf~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e-~p------LL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~  153 (208)
T PRK14731         81 VFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKE-AA------ILFESGGDAGLDFIVVVAADTELRLERAVQ  153 (208)
T ss_pred             HhCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEE-ee------eeeecCchhcCCeEEEEECCHHHHHHHHHH
Confidence                        122333332222    1  112 333343 33      112222233579999999999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhh
Q 029287          132 RNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLV  194 (196)
Q Consensus       132 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~  194 (196)
                      |+    ..+.+.+.+|+..+.......     +.. .++|+++++.+++.+++...+..++..
T Consensus       154 R~----~~s~e~~~~Ri~~q~~~~~~~-----~~a-d~vI~N~g~~e~l~~~i~~~~~~~~~~  206 (208)
T PRK14731        154 RG----MGSREEIRRRIAAQWPQEKLI-----ERA-DYVIYNNGTLDELKAQTEQLYQVLLQA  206 (208)
T ss_pred             cC----CCCHHHHHHHHHHcCChHHHH-----HhC-CEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence            83    236677788776654442222     122 246888999999999999888777543

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.77  E-value=4e-17  Score=117.89  Aligned_cols=168  Identities=20%  Similarity=0.270  Sum_probs=108.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCC-----CC--------------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKI-----VP--------------   69 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~--------------   69 (196)
                      +++|+|+|.+||||||+++.+++ +|+++++.|++.++...++.+....+.+.......     +.              
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            68999999999999999999999 89999999999998877776655554444332111     00              


Q ss_pred             ----HHHHHHHHHHHH---hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           70 ----SEVTVSLIQKEM---ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        70 ----~~~~~~~i~~~l---~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                          ....++.+...+   .......+++-..|      +.+.......+|.+|+++||+++..+|+++|    ...+.+
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eip------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R----~~~~~e  150 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIP------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKR----DGLDEE  150 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEch------HHHhccccccCCEEEEEECCHHHHHHHHHhc----CCCCHH
Confidence                112344444433   11111223333344      3333323334789999999999999999999    344555


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      ....+.....+....  ...++    .++++++++++..+++...+..++.
T Consensus       151 ~~~~~~~~Q~~~~ek--~~~ad----~vi~n~~~i~~l~~~i~~~~~~~~~  195 (201)
T COG0237         151 DAEARLASQRDLEEK--LALAD----VVIDNDGSIENLLEQIEKLLKELLG  195 (201)
T ss_pred             HHHHHHHhcCCHHHH--HhhcC----ChhhcCCCHHHHHHHHHHHHHHHHh
Confidence            555444333333221  11112    3678999999999999888877654

>PRK08233 hypothetical protein; Provisional

Probab=99.77  E-value=1.1e-17  Score=120.14  Aligned_cols=170  Identities=16%  Similarity=0.184  Sum_probs=94.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCC---HHHHHHHHHHHHhcC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP---SEVTVSLIQKEMESS   84 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i~~~l~~~   84 (196)
                      ++++|+|.|++||||||+++.|++.++...+...+.+...     .....+.+....+....   .......+.......
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   76 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFD-----NCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS   76 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcc-----cCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC
Confidence            3589999999999999999999999863322221211110     00111222222222221   111222232222221


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      ....+++| ++.....     ..+...+|++|||++|++++.+|+.+|...  +.+.+.+.++...|..+..+....+..
T Consensus        77 ~~~~vivd-~~~~~~~-----~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~  148 (182)
T PRK08233         77 NVDYIIVD-YPFAYLN-----SEMRQFIDVTIFIDTPLDIAMARRILRDFK--EDTGNEIHNDLKHYLNYARPLYLEALH  148 (182)
T ss_pred             CceEEEEe-eehhhcc-----HHHHHHcCEEEEEcCCHHHHHHHHHHHHhh--hccccchhhHHHHHHHHHHHHHHHHhh
Confidence            12334455 4432111     112235799999999999999998877321  122233445555666655554433222


Q ss_pred             ---cCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          165 ---RGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       165 ---~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                         ....++|+++.+++++.+++.+.+.+
T Consensus       149 ~~~~~~~~vId~~~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        149 TVKPNADIVLDGALSVEEIINQIEEELYR  177 (182)
T ss_pred             cCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence               23467799999999999999887754

>PLN02422 dephospho-CoA kinase

Probab=99.77  E-value=5.4e-17  Score=119.50  Aligned_cols=165  Identities=18%  Similarity=0.265  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH--------------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS--------------   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~--------------   70 (196)
                      ++|+|+|++||||||+++.|+ .+|+.+++.|++.++...++.+....+.+.....     ..++.              
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR   80 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            479999999999999999999 5799999999999888877766555555443221     11111              


Q ss_pred             ----HHHHHHHHHHHh-----c--CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC
Q 029287           71 ----EVTVSLIQKEME-----S--SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD  139 (196)
Q Consensus        71 ----~~~~~~i~~~l~-----~--~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~  139 (196)
                          ..+++.+...+.     .  .....+++| .|      +.+...+...+|.+|++++|++++.+|+.+|+    ..
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ip------LL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~  149 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IP------LLFETKMDKWTKPVVVVWVDPETQLERLMARD----GL  149 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-eh------hhhhcchhhhCCEEEEEECCHHHHHHHHHHcC----CC
Confidence                233555544332     1  112334444 44      34444444568999999999999999999983    33


Q ss_pred             cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +.+.+..|.....+...    . ...+. ++|+++++.+++..++...++.+.
T Consensus       150 s~eea~~Ri~~Q~~~ee----k-~~~AD-~VI~N~gs~e~L~~qv~~ll~~l~  196 (232)
T PLN02422        150 SEEQARNRINAQMPLDW----K-RSKAD-IVIDNSGSLEDLKQQFQKVLEKIR  196 (232)
T ss_pred             CHHHHHHHHHHcCChhH----H-HhhCC-EEEECCCCHHHHHHHHHHHHHHHh
Confidence            55666666533322211    1 12222 578899999999999988887764

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.76  E-value=1.4e-16  Score=115.36  Aligned_cols=170  Identities=16%  Similarity=0.172  Sum_probs=107.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC----CCCCH------------
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG----KIVPS------------   70 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~------------   70 (196)
                      ..|++|+|+|++||||||+++.|++.+|+.+++.|.+.++.... .+....+.+.+...    ..++.            
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~   82 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE   82 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence            34689999999999999999999998999999999888776544 33333333222111    11111            


Q ss_pred             ------HHHHHHHHHHHh----cCCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCCC
Q 029287           71 ------EVTVSLIQKEME----SSDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRVD  138 (196)
Q Consensus        71 ------~~~~~~i~~~l~----~~~~~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~  138 (196)
                            ..+++.+.+.+.    ......++++ .|      +.+...+  ...+|.++++++|+++.++|+.+|+    .
T Consensus        83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~e-ip------LL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd----~  151 (204)
T PRK14733         83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVD-IP------LLGPYNFRHYDYLKKVIVIKADLETRIRRLMERD----G  151 (204)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEE-ec------hhhhccCchhhhCCEEEEEECCHHHHHHHHHHcC----C
Confidence                  233444444332    2222334454 33      2232221  2257999999999999999999883    3


Q ss_pred             CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHHhhhhh
Q 029287          139 DNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVG-TVDEIFEQVRAVFAALKLV  194 (196)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~~~~~~  194 (196)
                      .+.+...+++....+.  ......++    ++|++++ +.+++..++...++.+..+
T Consensus       152 ~s~~~a~~ri~~Q~~~--eek~~~aD----~VI~N~g~~~~~l~~~~~~~~~~~~~~  202 (204)
T PRK14733        152 KNRQQAVAFINLQISD--KEREKIAD----FVIDNTELTDQELESKLITTINEITNL  202 (204)
T ss_pred             CCHHHHHHHHHhCCCH--HHHHHhCC----EEEECcCCCHHHHHHHHHHHHHHHHhc
Confidence            3455555555433322  12222222    5788999 9999999999888877543

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.76  E-value=1.3e-16  Score=115.91  Aligned_cols=161  Identities=18%  Similarity=0.216  Sum_probs=91.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCC---ceechhHHHHHHHhcCChhhHHHHHHhhcCCC--CCHH------------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGL---THLSAGELLRREIASNSEYGTTILNTIKEGKI--VPSE------------   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~------------   71 (196)
                      .++|+|+|++||||||+++.|++.++.   .++-.      ..+...+.+..+++++..+..  ....            
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~   76 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE   76 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            378999999999999999999999843   22211      001223445555555432221  1111            


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHH-----------HH-HHHHHHhCC-CCcEEEEeecChHHHHHHHhhccCCCC-
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEE-----------NR-AAFERIMGA-EPDIVLFFDCPEEEMVNRVLNRNEGRV-  137 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~-----------~~-~~~~~~~~~-~p~~~i~ld~~~~~~~~Rl~~r~~~~~-  137 (196)
                      .....+...+.  .+..+|+|+|..+..           ++ ..+...+.. .||++|||++|++.+.+|+..|..... 
T Consensus        77 ~~~~~i~~~l~--~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~  154 (195)
T TIGR00041        77 HLEDKIKPALA--EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDRE  154 (195)
T ss_pred             HHHHHHHHHHh--CCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchH
Confidence            11122222332  356778998764421           11 122222332 499999999999999999998832100 


Q ss_pred             -CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHH
Q 029287          138 -DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV  184 (196)
Q Consensus       138 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i  184 (196)
                       ..+.+.++.....|.+.       +.....+++||+++++++|.++|
T Consensus       155 ~~~~~~~~~~~~~~y~~~-------~~~~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       155 EFEKLDFFEKVRQRYLEL-------ADKEKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HcCCCcEEEEeCCCCHHHHHhhC
Confidence             00111222222222222       22255788999999999998764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.75  E-value=7.7e-16  Score=104.95  Aligned_cols=168  Identities=18%  Similarity=0.189  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      |+|.|.|+|||||||+++.|++++|+.+++.|.++|+......=.-..+.++ .+..+..+..+.........   ...+
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~-AE~~p~iD~~iD~rq~e~a~---~~nv   76 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRY-AEEDPEIDKEIDRRQKELAK---EGNV   76 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHH-HhcCchhhHHHHHHHHHHHH---cCCe
Confidence            5789999999999999999999999999999999987643322222222222 22223333333333333333   3445


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHH-hc---
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYA-RR---  165 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---  165 (196)
                      |+++-.     .-++.   ...+|+-|||++|.++..+|+.+|.....++-.....+|-   .+....+.+.|. +.   
T Consensus        77 VlegrL-----A~Wi~---k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE---~se~kRY~~~YgIDidDl  145 (179)
T COG1102          77 VLEGRL-----AGWIV---REYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVERE---ESEKKRYKKIYGIDIDDL  145 (179)
T ss_pred             EEhhhh-----HHHHh---ccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHHHHHHHHHhCCCCccc
Confidence            676532     11111   1478999999999999999999994221111111111111   111112222232 11   


Q ss_pred             -CcEEEEeC-CCCHhHHHHHHHHHHHhhh
Q 029287          166 -GKLYTINA-VGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       166 -~~~~~I~~-~~~~~~v~~~i~~~i~~~~  192 (196)
                       ..-++||. .-++++++.-+...+..+.
T Consensus       146 SiyDLVinTs~~~~~~v~~il~~aid~~~  174 (179)
T COG1102         146 SIYDLVINTSKWDPEEVFLILLDAIDALS  174 (179)
T ss_pred             eeeEEEEecccCCHHHHHHHHHHHHHhhc
Confidence             12244664 4578889888888876654

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.75  E-value=1.9e-17  Score=119.42  Aligned_cols=159  Identities=19%  Similarity=0.293  Sum_probs=93.3

Q ss_pred             EEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH------------HHHHHHHHHH
Q 029287           14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE------------VTVSLIQKEM   81 (196)
Q Consensus        14 i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~i~~~l   81 (196)
                      |+|.+||||||+++.|++++.-.....  ++ ...+..++.+..+++++.........            .....+...+
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~--~~-~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l   77 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKV--II-TFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL   77 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEE--EE-EESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcc--cc-cCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999983211110  00 01123456667777777632222211            1112233333


Q ss_pred             hcCCCCcEEEeCCCCCHH------------HHHHHHHH-hCCCCcEEEEeecChHHHHHHHhhccC-CCCCC-cHHHHHH
Q 029287           82 ESSDSKKFLIDGFPRSEE------------NRAAFERI-MGAEPDIVLFFDCPEEEMVNRVLNRNE-GRVDD-NIDTVRK  146 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~------------~~~~~~~~-~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~~-~~~~~~~  146 (196)
                      .  .+..+|+|+|..+..            ....+... ....||++||||+||+++.+|+..|.. .+... ..+.+.+
T Consensus        78 ~--~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~  155 (186)
T PF02223_consen   78 K--RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRR  155 (186)
T ss_dssp             H--TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHH
T ss_pred             c--CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence            3  467889999775421            11111111 233999999999999999999999954 11111 2233332


Q ss_pred             HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHH
Q 029287          147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV  184 (196)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i  184 (196)
                      ....|...       +....++++||++.++++|.++|
T Consensus       156 ~~~~y~~l-------~~~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  156 VREAYLEL-------AKDPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             HHHHHHHH-------HHTTTTEEEEETTS-HHHHHHHH
T ss_pred             HHHHHHHH-------HcCCCCEEEEECCCCHHHHHhhC
Confidence            23333333       22467999999999999998875

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.75  E-value=4.4e-16  Score=113.24  Aligned_cols=166  Identities=16%  Similarity=0.258  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCC--CCCHH-H-------HHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGK--IVPSE-V-------TVSL   76 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~-~-------~~~~   76 (196)
                      ++|+|+|++||||||+++.|++.+   |..++....      +...+.+..+++++....  ..... .       ....
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            478999999999999999999998   544433211      011123344454443321  11110 0       0111


Q ss_pred             HHHHHh--cCCCCcEEEeCCCCCHH------------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCC--C
Q 029287           77 IQKEME--SSDSKKFLIDGFPRSEE------------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRV--D  138 (196)
Q Consensus        77 i~~~l~--~~~~~~~iid~~~~~~~------------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~--~  138 (196)
                      ..+.+.  ...+..+|+|+|+.+..            ....+...  ....|+.+|||++|++++.+|+.+|.....  +
T Consensus        75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~  154 (200)
T cd01672          75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQ  154 (200)
T ss_pred             HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh
Confidence            111111  12467788998875521            11122111  124799999999999999999998842111  1


Q ss_pred             CcHHHHHHHHHHHHhchHhHHHHHHh--cCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          139 DNIDTVRKRLQVFKALNLPVINYYAR--RGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      ...+.+++....|...        ..  ..++++||++.+++++.++|.+.|.
T Consensus       155 ~~~~~~~~~~~~y~~~--------~~~~~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         155 EGLEFHERVREGYLEL--------AAQEPERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             hhHHHHHHHHHHHHHH--------HHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence            1122222222223322        22  2468889999999999999887764

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.74  E-value=5.8e-16  Score=115.07  Aligned_cols=167  Identities=19%  Similarity=0.186  Sum_probs=107.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-----CCCCCH-------------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-----GKIVPS-------------   70 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~-------------   70 (196)
                      |++|+|+|..||||||+++.|++.+|+.+++.|.+.++...++.+....+.+....     ...++.             
T Consensus         1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~   80 (244)
T PTZ00451          1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA   80 (244)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence            47899999999999999999999899999999999988877776655555443321     111211             


Q ss_pred             -----HHHHHHHHHH----Hh------------cCCCCcEEEeCCCCCHHHHHHHHHHh-CCCCcEEEEeecChHHHHHH
Q 029287           71 -----EVTVSLIQKE----ME------------SSDSKKFLIDGFPRSEENRAAFERIM-GAEPDIVLFFDCPEEEMVNR  128 (196)
Q Consensus        71 -----~~~~~~i~~~----l~------------~~~~~~~iid~~~~~~~~~~~~~~~~-~~~p~~~i~ld~~~~~~~~R  128 (196)
                           ..+++.+...    +.            ......+++| .|      +.|...+ ...+|.++++++|+++..+|
T Consensus        81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vP------LL~E~~~~~~~~D~iv~V~a~~e~ri~R  153 (244)
T PTZ00451         81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-AP------TLFETKTFTYFVSASVVVSCSEERQIER  153 (244)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-ec------hhhccCchhhcCCeEEEEECCHHHHHHH
Confidence                 1223333222    11            0112244555 33      3333221 22569999999999999999


Q ss_pred             HhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCC--CCHhHHHHHHHHHHHhhh
Q 029287          129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAV--GTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       129 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~--~~~~~v~~~i~~~i~~~~  192 (196)
                      +.+|+    ..+.+.+++|...-.+  .  . ....... ++|+++  ++.+++.+++...+.++.
T Consensus       154 L~~R~----g~s~eea~~Ri~~Q~~--~--~-ek~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~~~  209 (244)
T PTZ00451        154 LRKRN----GFSKEEALQRIGSQMP--L--E-EKRRLAD-YIIENDSADDLDELRGSVCDCVAWMS  209 (244)
T ss_pred             HHHcC----CCCHHHHHHHHHhCCC--H--H-HHHHhCC-EEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            99882    3355666766654222  1  1 1122333 467778  999999999998876654

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.73  E-value=2e-16  Score=114.53  Aligned_cols=165  Identities=19%  Similarity=0.288  Sum_probs=105.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCC----------------
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVP----------------   69 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~----------------   69 (196)
                      +|+|+|++||||||+++.|++ +|..+++.|.+.+....++.+....+.+.+...     ..++                
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            478999999999999998876 599999999999887777766555555433221     1111                


Q ss_pred             --HHHHHHHHHHHHh----c-CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           70 --SEVTVSLIQKEME----S-SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        70 --~~~~~~~i~~~l~----~-~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                        ...+++.+.+.+.    . .....++++ .|.      .+...+...+|.++++++|++++.+|+.+|+    ..+.+
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e-~pL------L~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~----g~s~e  148 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWE-VPL------LFETDAYTLCDATVTVDSDPEESILRTISRD----GMKKE  148 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEE-eee------eeEcCchhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence              1233454444332    1 122334444 442      2222222357999999999999999999983    33556


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      .+..|...-.    +..+ ....+. ++|+++++.+++..++...++++++
T Consensus       149 ~a~~ri~~Q~----~~~~-k~~~aD-~vI~N~~~~~~l~~~v~~l~~~~~~  193 (196)
T PRK14732        149 DVLARIASQL----PITE-KLKRAD-YIVRNDGNREGLKEECKILYSTLLK  193 (196)
T ss_pred             HHHHHHHHcC----CHHH-HHHhCC-EEEECCCCHHHHHHHHHHHHHHHHH
Confidence            6666655422    1111 122333 4678888999999999988877654

>PRK04040 adenylate kinase; Provisional

Probab=99.73  E-value=6.3e-16  Score=111.26  Aligned_cols=171  Identities=13%  Similarity=0.195  Sum_probs=100.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh-cCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME-SSD   85 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~-~~~   85 (196)
                      |++|+|+|+|||||||+++.|++.+  ++.+++.|++++.......-.  .-++.++.-...............+. ...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~--~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~   79 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLV--EHRDEMRKLPPEEQKELQREAAERIAEMAG   79 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCC--CCHHHHhhCChhhhHHHHHHHHHHHHHhhc
Confidence            6799999999999999999999999  899999999876654332210  01122221111111111122222222 123


Q ss_pred             CCcEEEeCCCC-----CH---HHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhchH
Q 029287           86 SKKFLIDGFPR-----SE---ENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR-NEGRVDDNIDTVRKRLQVFKALNL  156 (196)
Q Consensus        86 ~~~~iid~~~~-----~~---~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r-~~~~~~~~~~~~~~~~~~~~~~~~  156 (196)
                      ...+|+|+...     +.   .....+ .  ...|+.+|+|++||+.+.+|+.+. .++|..++.+.++.+...-    .
T Consensus        80 ~~~~~~~~h~~i~~~~g~~~~~~~~~~-~--~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a----~  152 (188)
T PRK04040         80 EGPVIVDTHATIKTPAGYLPGLPEWVL-E--ELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMN----R  152 (188)
T ss_pred             CCCEEEeeeeeeccCCCCcCCCCHHHH-h--hcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHH----H
Confidence            44578887442     10   011112 2  238999999999999998888853 2256666777776554432    3


Q ss_pred             hHHHHHHh--cCcEEEE-eCCCCHhHHHHHHHHHH
Q 029287          157 PVINYYAR--RGKLYTI-NAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       157 ~~~~~~~~--~~~~~~I-~~~~~~~~v~~~i~~~i  188 (196)
                      .+..+|+.  ...+++| |.++.+++..+++.+.+
T Consensus       153 ~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        153 AAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            23344443  3344444 44444888888877765

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.73  E-value=4.7e-16  Score=114.81  Aligned_cols=172  Identities=14%  Similarity=0.210  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechh-HHHHH-HHhcCChhhH------HHHHHhhcCC---CCCHHH-------
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG-ELLRR-EIASNSEYGT------TILNTIKEGK---IVPSEV-------   72 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~-~~~~~-~~~~~~~~~~------~~~~~l~~~~---~~~~~~-------   72 (196)
                      +|+|+|..||||||+++.|+++++..++... ..... .-+.+...+.      .++.......   ......       
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            4889999999999999999999986554332 11100 0001111111      1222222211   111110       


Q ss_pred             HHHHHHHHHh--cCCCCcEEEeCCCCCHHHH------------------HHHHHH---hCCCCcEEEEeecChHHHHHHH
Q 029287           73 TVSLIQKEME--SSDSKKFLIDGFPRSEENR------------------AAFERI---MGAEPDIVLFFDCPEEEMVNRV  129 (196)
Q Consensus        73 ~~~~i~~~l~--~~~~~~~iid~~~~~~~~~------------------~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl  129 (196)
                      ..+.+.+...  ...+..+|+|++..+....                  ..+...   ..+.||++||||+|++.+.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence            1111122111  1235678999986542111                  011111   1267999999999999999999


Q ss_pred             hhccCCCC-CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCC--CCHhHHHHHHH
Q 029287          130 LNRNEGRV-DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAV--GTVDEIFEQVR  185 (196)
Q Consensus       130 ~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~--~~~~~v~~~i~  185 (196)
                      .+|+.... ..+.+.++.....|.....+   .|.....+++||++  .+++++.++|.
T Consensus       161 ~~R~~~~e~~~~~~yl~~l~~~y~~~~~~---~~~~~~~~i~id~~~~~~~e~i~~~I~  216 (219)
T cd02030         161 KKRGDPHEMKVTSAYLQDIENAYKKTFLP---EISEHSEVLQYDWTEAGDTEKVVEDIE  216 (219)
T ss_pred             HHcCCchhhcccHHHHHHHHHHHHHHHHH---hhccCCCEEEEeCCChhhHHHHHHHHH
Confidence            98832111 11334444333444444211   13345689999988  77887777654

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK13949 shikimate kinase; Provisional

Probab=99.73  E-value=8.9e-16  Score=108.78  Aligned_cols=157  Identities=16%  Similarity=0.239  Sum_probs=90.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      ..|+|+|++||||||+++.|++.+++.+++.|.++.+....      .+.+... .|...+.......+.+ +..  ...
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~--~~~   72 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE--FED   72 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh--CCC
Confidence            46889999999999999999999999999999887654322      1222221 1222222222333333 322  223


Q ss_pred             EEE-e--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC---cHHHHHHH-HHHHHhchHhHHHH
Q 029287           89 FLI-D--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD---NIDTVRKR-LQVFKALNLPVINY  161 (196)
Q Consensus        89 ~ii-d--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~  161 (196)
                      +|+ .  +++....++..+.     ..+++|||++|++.+.+|+..+..+|+..   ..+.+.+. ...|...    ...
T Consensus        73 ~vis~Ggg~~~~~~~~~~l~-----~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R----~~~  143 (169)
T PRK13949         73 VVISTGGGAPCFFDNMELMN-----ASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKR----APF  143 (169)
T ss_pred             EEEEcCCcccCCHHHHHHHH-----hCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHH----HHH
Confidence            444 3  3444444454443     35788999999999999998543344322   11222211 1233333    333


Q ss_pred             HHhcCcEEEEeC-CCCHhHHHHHHHH
Q 029287          162 YARRGKLYTINA-VGTVDEIFEQVRA  186 (196)
Q Consensus       162 ~~~~~~~~~I~~-~~~~~~v~~~i~~  186 (196)
                      |.. ++ ++||. +.+++++.+.|.+
T Consensus       144 Y~~-ad-~~id~~~~~~~e~~~~I~~  167 (169)
T PRK13949        144 YRQ-AK-IIFNADKLEDESQIEQLVQ  167 (169)
T ss_pred             HHh-CC-EEEECCCCCHHHHHHHHHH
Confidence            443 34 56664 4478887777654

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.71  E-value=6.6e-16  Score=107.63  Aligned_cols=157  Identities=18%  Similarity=0.318  Sum_probs=98.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      .+.|+|+|+.||||||+++.|++.+++.++|.|..+.+...      ..+.+.... |...+...-...+.+.....  .
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~--~   73 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEED--N   73 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhcC--C
Confidence            35688899999999999999999999999999999877432      233333332 33333333344455555532  2


Q ss_pred             cEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC---cH-----HHHHHHHHHHHhchHh
Q 029287           88 KFLID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD---NI-----DTVRKRLQVFKALNLP  157 (196)
Q Consensus        88 ~~iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~---~~-----~~~~~~~~~~~~~~~~  157 (196)
                      .+|.-  |.....+.+..+..     -.++|||++|++++++|+.... .|+.-   +.     +.+++|...|.+.   
T Consensus        74 ~ViaTGGG~v~~~enr~~l~~-----~g~vv~L~~~~e~l~~Rl~~~~-~RPll~~~~~~~~l~~L~~~R~~~Y~e~---  144 (172)
T COG0703          74 AVIATGGGAVLSEENRNLLKK-----RGIVVYLDAPFETLYERLQRDR-KRPLLQTEDPREELEELLEERQPLYREV---  144 (172)
T ss_pred             eEEECCCccccCHHHHHHHHh-----CCeEEEEeCCHHHHHHHhcccc-CCCcccCCChHHHHHHHHHHHHHHHHHh---
Confidence            33322  34444555555443     3478999999999999999332 33311   22     2233333444333   


Q ss_pred             HHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          158 VINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       158 ~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                               ..++++.+...+++.++|.+.+...
T Consensus       145 ---------a~~~~~~~~~~~~v~~~i~~~l~~~  169 (172)
T COG0703         145 ---------ADFIIDTDDRSEEVVEEILEALEGS  169 (172)
T ss_pred             ---------CcEEecCCCCcHHHHHHHHHHHHHh
Confidence                     3356776666688888887777654

>PRK08118 topology modulation protein; Reviewed

Probab=99.71  E-value=4.3e-16  Score=110.19  Aligned_cols=97  Identities=21%  Similarity=0.345  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      +.|+|+|++||||||+++.|++.+++.+++.|.+++..-                ....++......+...+.   ...|
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~---~~~w   62 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVK---EDEW   62 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhc---CCCE
Confidence            578899999999999999999999999999988875310                011222333333334333   3569


Q ss_pred             EEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287           90 LIDGFPR-SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        90 iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r  132 (196)
                      |+||... ....+.       ..+|.+||||+|.+.+..|+.+|
T Consensus        63 VidG~~~~~~~~~l-------~~~d~vi~Ld~p~~~~~~R~~~R   99 (167)
T PRK08118         63 IIDGNYGGTMDIRL-------NAADTIIFLDIPRTICLYRAFKR   99 (167)
T ss_pred             EEeCCcchHHHHHH-------HhCCEEEEEeCCHHHHHHHHHHH
Confidence            9999543 332111       25899999999999999999988

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.70  E-value=2.7e-15  Score=103.64  Aligned_cols=154  Identities=15%  Similarity=0.289  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      |.|+|+|.||+||||+|+.|+ .+|+.+++..+++.+.--.. ...     -.+....+....+...+...+.   ....
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~-~~d-----e~r~s~~vD~d~~~~~le~~~~---~~~~   70 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYT-EYD-----ELRKSVIVDVDKLRKRLEELLR---EGSG   70 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCee-ccC-----CccceEEeeHHHHHHHHHHHhc---cCCe
Confidence            578999999999999999999 88999999888776531110 000     0000111222333333343331   3445


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHH-HHHHhchHhHHHHHHhcCcE
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRL-QVFKALNLPVINYYARRGKL  168 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (196)
                      |+++...          .+.+.+|++|+|.++|+.+.+||..|  +...  ....++.. +.+.--.....+.   ..++
T Consensus        71 Ivd~H~~----------hl~~~~dlVvVLR~~p~~L~~RLk~R--Gy~~--eKI~ENveAEi~~vi~~EA~E~---~~~v  133 (180)
T COG1936          71 IVDSHLS----------HLLPDCDLVVVLRADPEVLYERLKGR--GYSE--EKILENVEAEILDVILIEAVER---FEAV  133 (180)
T ss_pred             Eeechhh----------hcCCCCCEEEEEcCCHHHHHHHHHHc--CCCH--HHHHHHHHHHHHHHHHHHHHHh---cCce
Confidence            6776531          12225899999999999999999999  3322  22222211 1111111111222   2567


Q ss_pred             EEEe-CCCCHhHHHHHHHHHHHh
Q 029287          169 YTIN-AVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       169 ~~I~-~~~~~~~v~~~i~~~i~~  190 (196)
                      +.|| .+.+++++.+.|..++..
T Consensus       134 ~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         134 IEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             EEEECCCCCHHHHHHHHHHHHcc
Confidence            7887 578999999999998874

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.70  E-value=1.2e-15  Score=108.62  Aligned_cols=154  Identities=16%  Similarity=0.271  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      ..|+|+|++||||||+++.|++.+|+.+++.|.+.......  .    +.+.+.. +...........+ +.+.  ....
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~--~----~~~~~~~~g~~~~~~~e~~~~-~~~~--~~~~   73 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNM--T----VAEIVEREGWAGFRARESAAL-EAVT--APST   73 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCC--C----HHHHHHHHCHHHHHHHHHHHH-HHhc--CCCe
Confidence            46788999999999999999999999999998887654221  1    1111111 1111111112222 2222  2233


Q ss_pred             EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC--CCCCC--------cHHHHHHHHHHHHhchH
Q 029287           89 FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE--GRVDD--------NIDTVRKRLQVFKALNL  156 (196)
Q Consensus        89 ~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~~--------~~~~~~~~~~~~~~~~~  156 (196)
                      +|.-|  ++.....+..+.     ..+++|||++|++.+.+|+..|..  .|...        ..+.+++|...|...  
T Consensus        74 vi~~ggg~vl~~~~~~~l~-----~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~--  146 (171)
T PRK03731         74 VIATGGGIILTEENRHFMR-----NNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREV--  146 (171)
T ss_pred             EEECCCCccCCHHHHHHHH-----hCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHh--
Confidence            33222  333344443332     467899999999999999987631  12211        112222233333221  


Q ss_pred             hHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          157 PVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       157 ~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                                ..++||++++++++.+++.+.+.
T Consensus       147 ----------a~~~Id~~~~~e~v~~~i~~~l~  169 (171)
T PRK03731        147 ----------AHHIIDATQPPSQVVSEILSALA  169 (171)
T ss_pred             ----------CCEEEcCCCCHHHHHHHHHHHHh
Confidence                      23689999999999999887764

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.68  E-value=8.7e-16  Score=118.68  Aligned_cols=163  Identities=23%  Similarity=0.341  Sum_probs=101.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      +.+|++.|+|||||||+++.|++++ +..+++.|++.. .+......+..  .+...+...........+...+.  .+.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g~   76 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ-SLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK--SGK   76 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH-HhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--cCC
Confidence            5688889999999999999999999 899999876543 32221110000  00000000000111222333333  346


Q ss_pred             cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH---HHHHHHHhchHhHHHH
Q 029287           88 KFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR---KRLQVFKALNLPVINY  161 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  161 (196)
                      .+|+|+++.+..++..+...   ....+. +++|++|.+++.+|+.+|  +......+.++   ++++.|.....+.+..
T Consensus        77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~-~v~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~  153 (300)
T PHA02530         77 SVIISDTNLNPERRRKWKELAKELGAEFE-EKVFDVPVEELVKRNRKR--GERAVPEDVLRSMFKQMKEYRGLVWPVYTA  153 (300)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCeEE-EEEeCCCHHHHHHHHHcc--CcCCCCHHHHHHHHHHHHHhcCCCCceecc
Confidence            68999999887777666543   222233 489999999999999999  33334555555   6667777766677666


Q ss_pred             HHhcCcEEEEeCCCCHhH
Q 029287          162 YARRGKLYTINAVGTVDE  179 (196)
Q Consensus       162 ~~~~~~~~~I~~~~~~~~  179 (196)
                      +.....++.+|.++++.+
T Consensus       154 ~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        154 DPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             CCCCCCEEEEECCCcCcC
Confidence            655567777887766554

>PRK06762 hypothetical protein; Provisional

Probab=99.68  E-value=1.2e-14  Score=102.85  Aligned_cols=157  Identities=15%  Similarity=0.240  Sum_probs=92.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      |++|+|.|++||||||+++.|++.+  +..+++.+.+ ++.+.....         .. ...............+.  .+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~-r~~l~~~~~---------~~-~~~~~~~~~~~~~~~~~--~g   68 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV-RRDMLRVKD---------GP-GNLSIDLIEQLVRYGLG--HC   68 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH-HHHhccccC---------CC-CCcCHHHHHHHHHHHHh--CC
Confidence            6789999999999999999999998  4556676544 332221110         00 00111222222222232  34


Q ss_pred             CcEEEeCCCCCHHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           87 KKFLIDGFPRSEENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      ..+|+|+.......+..+...  ....+..++|||+|++++.+|..+|.... ....+.+..++..+....         
T Consensus        69 ~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~-~~~~~~l~~~~~~~~~~~---------  138 (166)
T PRK06762         69 EFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH-EFGEDDMRRWWNPHDTLG---------  138 (166)
T ss_pred             CEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc-cCCHHHHHHHHhhcCCcC---------
Confidence            667888875543333323222  12236678999999999999999884221 224555555433322221         


Q ss_pred             cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          165 RGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       165 ~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      ....+.++.+.+++++.+++...+
T Consensus       139 ~~~~~~~~~~~~~~~v~~~i~~~~  162 (166)
T PRK06762        139 VIGETIFTDNLSLKDIFDAILTDI  162 (166)
T ss_pred             CCCeEEecCCCCHHHHHHHHHHHh
Confidence            123355667789999998877654

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.67  E-value=4.9e-16  Score=110.77  Aligned_cols=152  Identities=23%  Similarity=0.316  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH--------------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS--------------   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~--------------   70 (196)
                      |+|+|+|..||||||+++.|++ +|+.+++.|.+.++...++.+....+.+.+...     ..++.              
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            6899999999999999999999 799999999999888777777666666544322     11211              


Q ss_pred             ----HHHHHHHHHHHh----cCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           71 ----EVTVSLIQKEME----SSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        71 ----~~~~~~i~~~l~----~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                          ..+++.+.+.+.    .... ..++++ .|.      .+...+...+|.++++.+|+++..+|+.+|+    ..+.
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pL------L~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~  148 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPL------LFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSE  148 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TT------TTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cch------hhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcH
Confidence                233455444444    2222 445555 442      2222334468999999999999999999983    3355


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhH
Q 029287          142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDE  179 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~  179 (196)
                      +.++.++....+...  ....++    ++|+++++.++
T Consensus       149 ~~~~~ri~~Q~~~~~--k~~~ad----~vI~N~g~~~~  180 (180)
T PF01121_consen  149 EEAEARIASQMPDEE--KRKRAD----FVIDNNGSLEE  180 (180)
T ss_dssp             HHHHHHHHTS--HHH--HHHH-S----EEEE-SSHHH-
T ss_pred             HHHHHHHHhCCCHHH--HHHhCC----EEEECCCCCCC
Confidence            666655443333322  112222    57888887664

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK04182 cytidylate kinase; Provisional

Probab=99.67  E-value=2.9e-14  Score=102.11  Aligned_cols=170  Identities=18%  Similarity=0.223  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      |+|+|.|++||||||+++.|++.+|+.+++.+++++............+.+.... ...........+.... . ....+
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~   77 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEE-DPEIDKEIDRRQLEIA-E-KEDNV   77 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhc-CchHHHHHHHHHHHHH-h-cCCCE
Confidence            4799999999999999999999999999998888776433221111112111111 1111111222222221 1 23456


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhchHhHHHHHH----h
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-NIDTVRKRLQVFKALNLPVINYYA----R  164 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~  164 (196)
                      |+++.....        .....++++|||++|++++.+|+..|. ++... ....++++..   .....+...|.    .
T Consensus        78 Vi~g~~~~~--------~~~~~~~~~V~l~a~~e~~~~Rl~~r~-~~~~~~a~~~~~~~d~---~~~~~~~~~~~~~~~~  145 (180)
T PRK04182         78 VLEGRLAGW--------MAKDYADLKIWLKAPLEVRAERIAERE-GISVEEALEETIEREE---SEAKRYKEYYGIDIDD  145 (180)
T ss_pred             EEEEeecce--------EecCCCCEEEEEECCHHHHHHHHHhcc-CCCHHHHHHHHHHHHH---HHHHHHHHHhCCCccc
Confidence            677632110        011237899999999999999999873 22111 1111111111   11111111111    0


Q ss_pred             -cCcEEEEeC-CCCHhHHHHHHHHHHHhhhhh
Q 029287          165 -RGKLYTINA-VGTVDEIFEQVRAVFAALKLV  194 (196)
Q Consensus       165 -~~~~~~I~~-~~~~~~v~~~i~~~i~~~~~~  194 (196)
                       ...-++||+ ..+++++.+.|.+.+......
T Consensus       146 ~~~~d~~idt~~~~~~~~~~~I~~~~~~~~~~  177 (180)
T PRK04182        146 LSIYDLVINTSRWDPEGVFDIILTAIDKLLKA  177 (180)
T ss_pred             cccccEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence             112245775 468999999998888766543

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.67  E-value=3.1e-15  Score=107.14  Aligned_cols=128  Identities=23%  Similarity=0.351  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCC-----CCC----------------
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK-----IVP----------------   69 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~----------------   69 (196)
                      +|+|+|++||||||+++.|++ +|+.+++.|++.++....+.+....+.+......     .+.                
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999999 8999999999999887777776666666553321     111                


Q ss_pred             --HHHHHHHHHHHHh----cCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           70 --SEVTVSLIQKEME----SSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        70 --~~~~~~~i~~~l~----~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                        ...+++.+...+.    .... ..++++ .|      +.+...+...+|.++++++|+++..+|+.+|+    ..+.+
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive-~p------lL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd----~~s~~  148 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLD-IP------LLFETGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEE  148 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEE-eh------HhhcCCcHHhCCeEEEEECCHHHHHHHHHHcC----CCCHH
Confidence              1233444444433    2222 344455 33      22222223367999999999999999999883    23555


Q ss_pred             HHHHHHHH
Q 029287          143 TVRKRLQV  150 (196)
Q Consensus       143 ~~~~~~~~  150 (196)
                      .+.+++..
T Consensus       149 ~~~~r~~~  156 (179)
T cd02022         149 EAEARIAS  156 (179)
T ss_pred             HHHHHHHh
Confidence            55555544

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.66  E-value=3.2e-15  Score=119.00  Aligned_cols=166  Identities=20%  Similarity=0.255  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH--------------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS--------------   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~--------------   70 (196)
                      ++|+|+|++||||||+++.|++ +|+.+++.|.+.++.+..+.+....+.+.....     ..++.              
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            5799999999999999999997 799999999998887776655444444333221     11111              


Q ss_pred             ----HHHHHHHHHHH----hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           71 ----EVTVSLIQKEM----ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        71 ----~~~~~~i~~~l----~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                          ..+++.+...+    ...+...+++.+.|.      .+...+...+|.+|++++|++++.+|+.+|+ +   .+.+
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipL------L~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rR-g---~s~~  150 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPL------LVESGMAPLFHLVVVVDADVEVRVRRLVEQR-G---MAEA  150 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeee------eecCCchhhCCEEEEEECCHHHHHHHHHhcC-C---CCHH
Confidence                12344444332    222334455555442      1111222357999999999999999998853 2   2223


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      ....+.......  ......    ..++|+++++.+++..++...+...+
T Consensus       151 ~a~~ri~~Q~~~--e~k~~~----AD~vIdN~~s~e~l~~~v~~~l~~~~  194 (395)
T PRK03333        151 DARARIAAQASD--EQRRAV----ADVWLDNSGTPDELVEAVRALWADRL  194 (395)
T ss_pred             HHHHHHHhcCCh--HHHHHh----CCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            333332221111  111111    23568899999999999888776654

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.66  E-value=4e-15  Score=103.43  Aligned_cols=172  Identities=23%  Similarity=0.330  Sum_probs=112.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-----------HHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-----------VSLI   77 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~i   77 (196)
                      -.+|++.|.++|||||++..|.+.+ +...+. ....+...-.+..|..+..++.+....++..+           .+.|
T Consensus         5 g~liV~eGlDrsgKstQ~~~l~~~l-~~~~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~i   82 (208)
T KOG3327|consen    5 GALIVLEGLDRSGKSTQCGKLVESL-IPGLDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSLI   82 (208)
T ss_pred             ccEEeeeccccCCceeehhHHHHHH-HhccCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHHH
Confidence            3688889999999999999999887 222221 22233334445678888888887766665433           3445


Q ss_pred             HHHHhcCCCCcEEEeCCCCCHHHHHHHHH-----------HhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           78 QKEMESSDSKKFLIDGFPRSEENRAAFER-----------IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        78 ~~~l~~~~~~~~iid~~~~~~~~~~~~~~-----------~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .+.+.  .+..+|+|+|..+-...- .++           .-.++||+++||++||+. ..|....+..| .++.+..++
T Consensus        83 ~e~l~--kg~~~ivDRY~~SGvAyS-~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~-~a~rggfG~Er-ye~v~fqek  157 (208)
T KOG3327|consen   83 KEKLA--KGTTLIVDRYSFSGVAYS-AAKGLDLDWCKQPDVGLPKPDLVLFLDVSPED-AARRGGFGEER-YETVAFQEK  157 (208)
T ss_pred             HHHHh--cCCeEEEecceecchhhh-hhcCCCcchhhCCccCCCCCCeEEEEeCCHHH-HHHhcCcchhH-HHHHHHHHH
Confidence            55554  356689999987632211 111           125789999999999999 44444442122 123444444


Q ss_pred             HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      ....|....+      .+..++.++|++.++++|.+.|..+++.++.
T Consensus       158 v~~~~q~l~r------~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~  198 (208)
T KOG3327|consen  158 VLVFFQKLLR------KEDLNWHVVDASKSVEKVHQQVRSLVENVLS  198 (208)
T ss_pred             HHHHHHHHHh------ccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence            4555555421      2456889999999999999999988887764

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.66  E-value=7.3e-15  Score=98.74  Aligned_cols=153  Identities=14%  Similarity=0.176  Sum_probs=101.1

Q ss_pred             EcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH---HHHHHHhc--CCCCcE
Q 029287           15 LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS---LIQKEMES--SDSKKF   89 (196)
Q Consensus        15 ~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~i~~~l~~--~~~~~~   89 (196)
                      +|.+||||||++..|++.+|+.+++.|++....          ..+.+..|.+++++-..+   .+...+..  ..+...
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~a----------Ni~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~   70 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPA----------NIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV   70 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHH----------HHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence            499999999999999999999999998775432          445566777776543321   12222221  123345


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEE
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLY  169 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (196)
                      |+-+.......+..+... .+. -.+|||+.+++++.+|+..|.  .+....+.+..++...+....        ...++
T Consensus        71 vi~CSALKr~YRD~LR~~-~~~-~~Fv~L~g~~~~i~~Rm~~R~--gHFM~~~ll~SQfa~LE~P~~--------de~vi  138 (161)
T COG3265          71 VIACSALKRSYRDLLREA-NPG-LRFVYLDGDFDLILERMKARK--GHFMPASLLDSQFATLEEPGA--------DEDVL  138 (161)
T ss_pred             EEecHHHHHHHHHHHhcc-CCC-eEEEEecCCHHHHHHHHHhcc--cCCCCHHHHHHHHHHhcCCCC--------CCCEE
Confidence            566554443344443332 222 235999999999999999993  344467777776666655522        12688


Q ss_pred             EEeCCCCHhHHHHHHHHHHH
Q 029287          170 TINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       170 ~I~~~~~~~~v~~~i~~~i~  189 (196)
                      .||.+.+++++.+++...+.
T Consensus       139 ~idi~~~~e~vv~~~~~~l~  158 (161)
T COG3265         139 TIDIDQPPEEVVAQALAWLK  158 (161)
T ss_pred             EeeCCCCHHHHHHHHHHHHh
Confidence            89999999999888766554

>TIGR00152 dephospho-CoA kinase

Probab=99.66  E-value=5.1e-15  Score=106.91  Aligned_cols=158  Identities=20%  Similarity=0.270  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-----CCCCCH---------------
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-----GKIVPS---------------   70 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~---------------   70 (196)
                      +|+|+|.+||||||+++.|++..|+.+++.|++.++.+..+.+....+.+....     ...+..               
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999999977999999999988877766555554433321     111111               


Q ss_pred             ---HHHH----HHHHHHHhcC--CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           71 ---EVTV----SLIQKEMESS--DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        71 ---~~~~----~~i~~~l~~~--~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                         ..++    ..+.+.+...  .+..++++ .|.-      +...+...+|.++++++|++++.+|+.+|+    ..+.
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~-~pll------~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~  149 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLD-VPLL------FENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTE  149 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEE-chHh------hhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence               1112    2223332221  12234444 4321      111122357899999999999999999983    3355


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHH
Q 029287          142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVR  185 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~  185 (196)
                      +.+.+|+......    ... ... .-++|+++++++++..++.
T Consensus       150 ~~~~~r~~~q~~~----~~~-~~~-ad~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       150 EEVQKRLASQMDI----EER-LAR-ADDVIDNSATLADLVKQLE  187 (188)
T ss_pred             HHHHHHHHhcCCH----HHH-HHh-CCEEEECCCCHHHHHHHHh
Confidence            6666665554322    111 111 2256888999999988764

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.66  E-value=3e-14  Score=100.43  Aligned_cols=164  Identities=21%  Similarity=0.288  Sum_probs=111.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCC-----CCCHH------------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK-----IVPSE------------   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~------------   71 (196)
                      |++++|+|..||||||+++.+. .+|++++|+|.+.|+...++.+....+.+.....-     .++..            
T Consensus         1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~   79 (225)
T KOG3220|consen    1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK   79 (225)
T ss_pred             CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence            4799999999999999999888 66999999999999999999888777766554321     11110            


Q ss_pred             ------HHHHHHHHHHh-------cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCC
Q 029287           72 ------VTVSLIQKEME-------SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD  138 (196)
Q Consensus        72 ------~~~~~i~~~l~-------~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~  138 (196)
                            ..++.|...+-       ..+...+|+| .|      +.|+..+......++.+.||.+...+|+..|    ++
T Consensus        80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iP------LLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~R----d~  148 (225)
T KOG3220|consen   80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IP------LLFEAKLLKICHKTVVVTCDEELQLERLVER----DE  148 (225)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-ch------HHHHHhHHhheeeEEEEEECcHHHHHHHHHh----cc
Confidence                  11222222111       1233444454 55      4454444445667789999999999999999    35


Q ss_pred             CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          139 DNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      .+.+..++|.....+.....     +. .-++|++++++++..+++......
T Consensus       149 lse~dAe~Rl~sQmp~~~k~-----~~-a~~Vi~Nng~~~~l~~qv~~v~~~  194 (225)
T KOG3220|consen  149 LSEEDAENRLQSQMPLEKKC-----EL-ADVVIDNNGSLEDLYEQVEKVLAL  194 (225)
T ss_pred             ccHHHHHHHHHhcCCHHHHH-----Hh-hheeecCCCChHHHHHHHHHHHHH
Confidence            56777777766554443311     11 125789999999999998776543

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.65  E-value=4.9e-15  Score=107.42  Aligned_cols=156  Identities=15%  Similarity=0.215  Sum_probs=82.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH----HH---HHHHHHHHHh-
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS----EV---TVSLIQKEME-   82 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~---~~~~i~~~l~-   82 (196)
                      +|+|+|++||||||+++.|++++|...+....- ..  ....+.   ++...........    ..   ..+.+.+... 
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~-~~--~~~~~~---l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE-PD--VEGNPF---LEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcccccccc-cc--CCCCCC---HHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999887654432110 00  000011   1111111000000    00   1111111111 


Q ss_pred             cCCCCcEEEeCCCCCHHH---------------HH---HHHHHh---CCCCcEEEEeecChHHHHHHHhhccCCCC-CCc
Q 029287           83 SSDSKKFLIDGFPRSEEN---------------RA---AFERIM---GAEPDIVLFFDCPEEEMVNRVLNRNEGRV-DDN  140 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~---------------~~---~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~-~~~  140 (196)
                      ...+..+|+|+++.+...               ..   .+...+   ...||++||||+|++++.+|+.+|..... ..+
T Consensus        75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~~  154 (193)
T cd01673          75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQGIP  154 (193)
T ss_pred             cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHhhhcCC
Confidence            124678899998865221               11   111111   35799999999999999999998832111 113


Q ss_pred             HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCC
Q 029287          141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVG  175 (196)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~  175 (196)
                      .+.+++....|..+....   .....++++||++.
T Consensus       155 ~~~~~~l~~~y~~~~~~~---~~~~~~~~vid~~~  186 (193)
T cd01673         155 LDYLEDLHEAYEKWFLPQ---MYEKAPVLIIDANE  186 (193)
T ss_pred             HHHHHHHHHHHHHHHhhc---cCCCCCEEEEECCc
Confidence            444444444555542211   11246888999875

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.65  E-value=4.4e-14  Score=99.73  Aligned_cols=155  Identities=14%  Similarity=0.158  Sum_probs=87.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-----HHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-----EIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      |+|.|++||||||+++.|++.++..+++.+++...     ..............+        -......+...+..  +
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~--~   70 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPW--------LQNLNDASTAAAAK--N   70 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHH--------HHHHHHHHHHHHhc--C
Confidence            46899999999999999999999999998776322     111110000000000        01112233333332  2


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcE-EEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           87 KKFLIDGFPRSEENRAAFERIMGAEPDI-VLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~-~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      ...|++.-......+..+. ..  .+++ ++||++|++++.+|+..|..  .....+.++.+...+....       .+.
T Consensus        71 ~~~Vi~~t~~~~~~r~~~~-~~--~~~~~~i~l~~~~e~~~~R~~~R~~--~~~~~~~i~~~~~~~~~~~-------~~e  138 (163)
T TIGR01313        71 KVGIITCSALKRHYRDILR-EA--EPNLHFIYLSGDKDVILERMKARKG--HFMKADMLESQFAALEEPL-------ADE  138 (163)
T ss_pred             CCEEEEecccHHHHHHHHH-hc--CCCEEEEEEeCCHHHHHHHHHhccC--CCCCHHHHHHHHHHhCCCC-------CCC
Confidence            2335554333333333332 22  2333 59999999999999998841  1223444444433222110       112


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHH
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      ..+.+||++++++++.+++.+.+
T Consensus       139 ~~~~~id~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313       139 TDVLRVDIDQPLEGVEEDCIAVV  161 (163)
T ss_pred             CceEEEECCCCHHHHHHHHHHHH
Confidence            36788999999999998877665

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK13946 shikimate kinase; Provisional

Probab=99.64  E-value=3e-14  Score=102.48  Aligned_cols=165  Identities=21%  Similarity=0.266  Sum_probs=96.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      .++.|+++|++||||||+++.|++.+|+.+++.|..+.+..  +..... +.+.  .|...........+...+..  ..
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e-~~~~--~ge~~~~~~e~~~l~~l~~~--~~   81 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAE-IFAA--YGEPEFRDLERRVIARLLKG--GP   81 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHH-HHHH--HCHHHHHHHHHHHHHHHHhc--CC
Confidence            45689999999999999999999999999999987765542  112111 1111  11111112223333333332  23


Q ss_pred             cEEEeCCC--CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC----CCcHHHHHHHHHHHHhchHhHHHH
Q 029287           88 KFLIDGFP--RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV----DDNIDTVRKRLQVFKALNLPVINY  161 (196)
Q Consensus        88 ~~iid~~~--~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  161 (196)
                      .+|..+..  .....+..+.     ...++|||++|++++.+|+.+|. ++.    .+..+.+++   .+...    ...
T Consensus        82 ~Vi~~ggg~~~~~~~r~~l~-----~~~~~v~L~a~~e~~~~Rl~~r~-~rp~~~~~~~~~~i~~---~~~~R----~~~  148 (184)
T PRK13946         82 LVLATGGGAFMNEETRAAIA-----EKGISVWLKADLDVLWERVSRRD-TRPLLRTADPKETLAR---LMEER----YPV  148 (184)
T ss_pred             eEEECCCCCcCCHHHHHHHH-----cCCEEEEEECCHHHHHHHhcCCC-CCCcCCCCChHHHHHH---HHHHH----HHH
Confidence            45554432  2333333332     24678999999999999998773 332    112233332   22222    112


Q ss_pred             HHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          162 YARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       162 ~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      |.. ..+.+.....+++++.+.|...+....+
T Consensus       149 y~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~~  179 (184)
T PRK13946        149 YAE-ADLTVASRDVPKEVMADEVIEALAAYLE  179 (184)
T ss_pred             HHh-CCEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence            333 3444455778999999999888877654

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.64  E-value=1.1e-13  Score=98.36  Aligned_cols=113  Identities=22%  Similarity=0.287  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      |+|+|.|++||||||+++.|++.+|+.+++.+++++............+.........+ .......+.....  ....+
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~   77 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEI-DKKIDRRIHEIAL--KEKNV   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHH-HHHHHHHHHHHHh--cCCCE
Confidence            47999999999999999999999999999998877664322111111111111111101 1112222222221  23456


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      |+++.....        .+...++++|+|++|++++.+|+.+|.
T Consensus        78 Vi~g~~~~~--------~~~~~~d~~v~v~a~~~~r~~R~~~R~  113 (171)
T TIGR02173        78 VLESRLAGW--------IVREYADVKIWLKAPLEVRARRIAKRE  113 (171)
T ss_pred             EEEecccce--------eecCCcCEEEEEECCHHHHHHHHHHcc
Confidence            777753211        112357899999999999999999984

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.64  E-value=4.2e-14  Score=100.75  Aligned_cols=165  Identities=19%  Similarity=0.268  Sum_probs=92.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      .++.|+|.|++||||||+++.|++.+|+.+++.+.++....+.  +....+.+   .+...........+......  ..
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~~---~g~~~~~~~~~~~~~~l~~~--~~   75 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFEE---EGEAAFRELEEEVLAELLAR--HN   75 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHHH---HCHHHHHHHHHHHHHHHHhc--CC
Confidence            3568899999999999999999999999999998877653221  11111111   11111111222333333321  22


Q ss_pred             cEEEeCC--CCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCC----CcHHHHHHHHHHHHhchHhHHHH
Q 029287           88 KFLIDGF--PRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD----DNIDTVRKRLQVFKALNLPVINY  161 (196)
Q Consensus        88 ~~iid~~--~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  161 (196)
                      .+|..+-  ......+..+.     ...++|||++|++.+.+|+.++.. +..    ...+.+.+   .|... .+.   
T Consensus        76 ~vi~~g~~~~~~~~~r~~l~-----~~~~~v~l~~~~~~~~~R~~~~~~-r~~~~~~~~~~~~~~---~~~~~-~~~---  142 (175)
T PRK00131         76 LVISTGGGAVLREENRALLR-----ERGTVVYLDASFEELLRRLRRDRN-RPLLQTNDPKEKLRD---LYEER-DPL---  142 (175)
T ss_pred             CEEEeCCCEeecHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHH---HHHHH-HHH---
Confidence            3433331  11222232221     345779999999999999987642 221    11222222   22222 111   


Q ss_pred             HHhcCcEEEEe-CCCCHhHHHHHHHHHHHhhhh
Q 029287          162 YARRGKLYTIN-AVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       162 ~~~~~~~~~I~-~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      |..... +.|| ++.+++++.+.|.+.++.+++
T Consensus       143 ~~~~~d-l~idt~~~~~~e~~~~I~~~v~~~~~  174 (175)
T PRK00131        143 YEEVAD-ITVETDGRSPEEVVNEILEKLEAAWR  174 (175)
T ss_pred             HHhhcC-eEEeCCCCCHHHHHHHHHHHHHhhcc
Confidence            111123 3565 678999999999999987764

>PRK13947 shikimate kinase; Provisional

Probab=99.62  E-value=6.7e-14  Score=99.54  Aligned_cols=157  Identities=15%  Similarity=0.203  Sum_probs=85.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      .|+|.|++||||||+++.|++.+|+.+++.+.+++...  +.+    +.+.+.. +....... ...+.+.+.. ....+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~----~~~~~~~~ge~~~~~~-e~~~~~~l~~-~~~~v   74 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMT----VAEIFEKDGEVRFRSE-EKLLVKKLAR-LKNLV   74 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCc----HHHHHHHhChHHHHHH-HHHHHHHHhh-cCCeE
Confidence            58889999999999999999999999999988776542  111    1121211 11111111 1122223321 12223


Q ss_pred             EEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhchHhHHHHHHhcC
Q 029287           90 LIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-NIDTVRKRLQVFKALNLPVINYYARRG  166 (196)
Q Consensus        90 iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (196)
                      |..+  ++........+.     ..+++|||++|++.+.+|+..|. .++.. ..+......+.|....    ..|. ..
T Consensus        75 i~~g~g~vl~~~~~~~l~-----~~~~vv~L~~~~~~l~~Rl~~r~-~rp~~~~~~~~~~i~~~~~~r~----~~y~-~a  143 (171)
T PRK13947         75 IATGGGVVLNPENVVQLR-----KNGVVICLKARPEVILRRVGKKK-SRPLLMVGDPEERIKELLKERE----PFYD-FA  143 (171)
T ss_pred             EECCCCCcCCHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCC-CCCCCCCCChHHHHHHHHHHHH----HHHH-hc
Confidence            2222  223333333332     23578999999999999998763 33221 1122222122333331    2222 12


Q ss_pred             cEEEEeCCCCHhHHHHHHHH
Q 029287          167 KLYTINAVGTVDEIFEQVRA  186 (196)
Q Consensus       167 ~~~~I~~~~~~~~v~~~i~~  186 (196)
                      .+.+.+++.+++++.+.|.+
T Consensus       144 d~~Idt~~~~~~~i~~~I~~  163 (171)
T PRK13947        144 DYTIDTGDMTIDEVAEEIIK  163 (171)
T ss_pred             CEEEECCCCCHHHHHHHHHH
Confidence            33333467899999998877

>PRK00625 shikimate kinase; Provisional

Probab=99.62  E-value=2.3e-14  Score=101.65  Aligned_cols=114  Identities=13%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      |.|+|+|++||||||+++.|++++|+.+++.|+++++......  ...+.+.... |...+.......+ ..+..  ...
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~--~~~i~eif~~~Ge~~fr~~E~~~l-~~l~~--~~~   75 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL--YSSPKEIYQAYGEEGFCREEFLAL-TSLPV--IPS   75 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC--CCCHHHHHHHHCHHHHHHHHHHHH-HHhcc--CCe
Confidence            3688999999999999999999999999999999876533210  0112222221 2111111112222 22222  233


Q ss_pred             EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           89 FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        89 ~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      +|..+  .+.....+..+     .....+|||++|++++.+|+.+|.
T Consensus        76 VIs~GGg~~~~~e~~~~l-----~~~~~Vv~L~~~~e~l~~Rl~~R~  117 (173)
T PRK00625         76 IVALGGGTLMIEPSYAHI-----RNRGLLVLLSLPIATIYQRLQKRG  117 (173)
T ss_pred             EEECCCCccCCHHHHHHH-----hcCCEEEEEECCHHHHHHHHhcCC
Confidence            43232  22222222222     134678999999999999999884

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.62  E-value=1.7e-13  Score=94.00  Aligned_cols=172  Identities=16%  Similarity=0.247  Sum_probs=99.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-HHHHHHHHhcC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-VSLIQKEMESS   84 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~l~~~   84 (196)
                      +++++++|+|.||+||||+++.+.+.+ ....++.|+++.+....  ......++.++ +.+...+.. .....+.+...
T Consensus         2 k~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k--~glve~rD~~R-klp~e~Q~~lq~~Aa~rI~~~   78 (189)
T COG2019           2 KGRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKK--KGLVEHRDEMR-KLPLENQRELQAEAAKRIAEM   78 (189)
T ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHH--hCCcccHHHHh-cCCHHHHHHHHHHHHHHHHHh
Confidence            347899999999999999999999998 77789999987543111  11112333333 222222211 11111222211


Q ss_pred             CCCcEEEeC---------CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhc
Q 029287           85 DSKKFLIDG---------FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR-NEGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus        85 ~~~~~iid~---------~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r-~~~~~~~~~~~~~~~~~~~~~~  154 (196)
                      ... +|+|.         |..+...|+  ..  ..+||++++|..+|+.+..|..+. ++.|..++.+.+.    .+.+.
T Consensus        79 ~~~-iivDtH~~IkTP~GylpgLP~~V--l~--~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~----eHqe~  149 (189)
T COG2019          79 ALE-IIVDTHATIKTPAGYLPGLPSWV--LE--ELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIR----EHQEM  149 (189)
T ss_pred             hhc-eEEeccceecCCCccCCCCcHHH--HH--hcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHH----HHHHH
Confidence            111 45653         222222222  12  238999999999998888777655 3345555555544    55555


Q ss_pred             hHhHHHHHHh--cCcEEEEe-CCCCHhHHHHHHHHHHHh
Q 029287          155 NLPVINYYAR--RGKLYTIN-AVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       155 ~~~~~~~~~~--~~~~~~I~-~~~~~~~v~~~i~~~i~~  190 (196)
                      ++-.+..|+-  ...+.+|. .++.+++...+|...+..
T Consensus       150 nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~  188 (189)
T COG2019         150 NRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR  188 (189)
T ss_pred             HHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            5655555554  33454454 457888888888776653

>PRK13948 shikimate kinase; Provisional

Probab=99.62  E-value=1e-13  Score=99.06  Aligned_cols=164  Identities=13%  Similarity=0.130  Sum_probs=92.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSD   85 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~   85 (196)
                      +.+..|+|+|++||||||+++.|++.+|..+++.|..+.+....      .+.+.... |...+.......+.+.+..  
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~------si~~if~~~Ge~~fR~~E~~~l~~l~~~--   79 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGK------SIPEIFRHLGEAYFRRCEAEVVRRLTRL--   79 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhC------CHHHHHHHhCHHHHHHHHHHHHHHHHhc--
Confidence            34578899999999999999999999999999999887664322      22222221 2222222223333333332  


Q ss_pred             CCcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc-HHHHHHHHHHHHhchHhHHHHH
Q 029287           86 SKKFLID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN-IDTVRKRLQVFKALNLPVINYY  162 (196)
Q Consensus        86 ~~~~iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  162 (196)
                      ...+|.-  +.+.....+..+.     ....+|||++|++++.+|+..+  +|+.-. ....++....|...    ...|
T Consensus        80 ~~~VIa~GgG~v~~~~n~~~l~-----~~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R----~~~Y  148 (182)
T PRK13948         80 DYAVISLGGGTFMHEENRRKLL-----SRGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNER----EPVY  148 (182)
T ss_pred             CCeEEECCCcEEcCHHHHHHHH-----cCCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHH----HHHH
Confidence            2233321  2333333333333     2366799999999999999543  333211 11111111233333    2223


Q ss_pred             HhcCcEEEEeC-CCCHhHHHHHHHHHHHhh
Q 029287          163 ARRGKLYTINA-VGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       163 ~~~~~~~~I~~-~~~~~~v~~~i~~~i~~~  191 (196)
                      .. .. ++|++ +.+++++.++|.+.+...
T Consensus       149 ~~-a~-~~i~t~~~~~~ei~~~i~~~l~~~  176 (182)
T PRK13948        149 RQ-AT-IHVSTDGRRSEEVVEEIVEKLWAW  176 (182)
T ss_pred             Hh-CC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence            22 22 35554 568999999888777553

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.62  E-value=3.5e-14  Score=95.56  Aligned_cols=160  Identities=15%  Similarity=0.252  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      +.|.|+|.||+||||+++.|++.+|+.++..+++++..--..     .+-+ -..-..++++.+.+.+...+..   .+.
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~-----gyDE-~y~c~i~DEdkv~D~Le~~m~~---Gg~   78 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYE-----GYDE-EYKCHILDEDKVLDELEPLMIE---GGN   78 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchh-----cccc-cccCccccHHHHHHHHHHHHhc---CCc
Confidence            567779999999999999999999999999999987641110     0100 0112345566777777777775   344


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH--HHHHHHhchHhHHHHHHhcCc
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK--RLQVFKALNLPVINYYARRGK  167 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  167 (196)
                      |+|-.....     |.   ...+|++++|.||..++..||..|  +..+   ..+++  .-++|........+.|.+. .
T Consensus        79 IVDyHgCd~-----Fp---erwfdlVvVLr~~~s~LY~RL~sR--gY~e---~Ki~eNiecEIfgv~~eea~eSy~~~-i  144 (176)
T KOG3347|consen   79 IVDYHGCDF-----FP---ERWFDLVVVLRTPNSVLYDRLKSR--GYSE---KKIKENIECEIFGVVLEEARESYSPK-I  144 (176)
T ss_pred             EEeecccCc-----cc---hhheeEEEEEecCchHHHHHHHHc--CCCH---HHHhhhcchHHHHHHHHHHHHHcCCc-c
Confidence            555322110     00   124799999999999999999988  3322   22222  2355666666666666654 4


Q ss_pred             EEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          168 LYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       168 ~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      |.....+ ..+++...+...+...-.
T Consensus       145 V~eL~s~-~~Eem~~ni~ri~~w~~~  169 (176)
T KOG3347|consen  145 VVELQSE-TKEEMESNISRILNWTRM  169 (176)
T ss_pred             eeecCcC-CHHHHHHHHHHHHHHHHH
Confidence            4444444 447777776666655443

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=6.2e-14  Score=94.89  Aligned_cols=158  Identities=16%  Similarity=0.265  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-------HHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-------VSLIQKEME   82 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~i~~~l~   82 (196)
                      -+|++.|++||||||++++|++.+|+.+++.|++...          ..++-+..|.+++++..       .......+.
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~   82 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELRKALA   82 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHHHHhh
Confidence            4788899999999999999999999999999887532          24455666666654322       222333333


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhC-----CCC---cEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMG-----AEP---DIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~-----~~p---~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~  154 (196)
                        +.+++|+-+....-..+..+..++.     ..|   -.+++|..+.+++.+|+.+|..  +....+.++.++...+..
T Consensus        83 --~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g--HFMp~~lleSQf~~LE~p  158 (191)
T KOG3354|consen   83 --SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG--HFMPADLLESQFATLEAP  158 (191)
T ss_pred             --cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc--ccCCHHHHHHHHHhccCC
Confidence              5677777766555444554444321     112   2358899999999999999943  333667777766555444


Q ss_pred             hHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287          155 NLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVF  188 (196)
Q Consensus       155 ~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i  188 (196)
                      .       ++..+++.|+.. .+++++.+.|.+-+
T Consensus       159 ~-------~~e~div~isv~~~~~e~iv~tI~k~~  186 (191)
T KOG3354|consen  159 D-------ADEEDIVTISVKTYSVEEIVDTIVKMV  186 (191)
T ss_pred             C-------CCccceEEEeeccCCHHHHHHHHHHHH
Confidence            2       233356777755 88888887766544

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.60  E-value=1e-13  Score=98.56  Aligned_cols=162  Identities=15%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      +..|+|.|++||||||+++.|++.+|+.+++.|..+.+....  .    +..... .|...+.......+.. +..  ..
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~--~----i~~~~~~~g~~~fr~~e~~~l~~-l~~--~~   74 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA--D----IGWVFDVEGEEGFRDREEKVINE-LTE--KQ   74 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCc--C----HhHHHHHhCHHHHHHHHHHHHHH-HHh--CC
Confidence            357889999999999999999999999999998765543221  1    111111 1111111111222223 222  12


Q ss_pred             cEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           88 KFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        88 ~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      .+++..   .+.....+..+.     ..+.+|||++|++++.+|+..+. .|+........+.+..+.....+++..+++
T Consensus        75 ~~vi~~ggg~v~~~~~~~~l~-----~~~~vv~L~~~~e~~~~Ri~~~~-~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad  148 (172)
T PRK05057         75 GIVLATGGGSVKSRETRNRLS-----ARGVVVYLETTIEKQLARTQRDK-KRPLLQVDDPREVLEALANERNPLYEEIAD  148 (172)
T ss_pred             CEEEEcCCchhCCHHHHHHHH-----hCCEEEEEeCCHHHHHHHHhCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence            233332   122223333333     34688999999999999997653 333221000011121222222333333333


Q ss_pred             cCcEEEEeC-CCCHhHHHHHHHHHHH
Q 029287          165 RGKLYTINA-VGTVDEIFEQVRAVFA  189 (196)
Q Consensus       165 ~~~~~~I~~-~~~~~~v~~~i~~~i~  189 (196)
                          ++||+ ..+++++.+.|.+.++
T Consensus       149 ----~~idt~~~s~~ei~~~i~~~l~  170 (172)
T PRK05057        149 ----VTIRTDDQSAKVVANQIIHMLE  170 (172)
T ss_pred             ----EEEECCCCCHHHHHHHHHHHHh
Confidence                45664 4689999888776653

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.60  E-value=1.3e-13  Score=99.34  Aligned_cols=165  Identities=16%  Similarity=0.166  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH-----hcCChhhHHHHHHhhcCCCCCHHHH-------HHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI-----ASNSEYGTTILNTIKEGKIVPSEVT-------VSLI   77 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~i   77 (196)
                      .+++|.||+||||||++++|+..++..+...+..+.+..     ....-....+...+..+........       ...+
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~   82 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI   82 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence            478889999999999999999876654444333222110     0111112222222222221111000       0124


Q ss_pred             HHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHh
Q 029287           78 QKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLP  157 (196)
Q Consensus        78 ~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~  157 (196)
                      ...+..  +..+|+++-   ......+.+.+ ..+..+|||++|++++.+|+.+|  ++.  +.+.+++|+..+.     
T Consensus        83 ~~~l~~--g~~VI~~G~---~~~~~~~~~~~-~~~~~vi~l~~s~e~l~~RL~~R--~~~--~~~~i~~rl~r~~-----  147 (186)
T PRK10078         83 DLWLHA--GFDVLVNGS---RAHLPQARARY-QSALLPVCLQVSPEILRQRLENR--GRE--NASEINARLARAA-----  147 (186)
T ss_pred             HHHHhC--CCEEEEeCh---HHHHHHHHHHc-CCCEEEEEEeCCHHHHHHHHHHh--CCC--CHHHHHHHHHHhh-----
Confidence            444443  345666544   12222233333 34566799999999999999987  322  4455666653221     


Q ss_pred             HHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          158 VINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       158 ~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                         .+ .....++|+++++++++.++|...+..-.+
T Consensus       148 ---~~-~~ad~~vi~~~~s~ee~~~~i~~~l~~~~~  179 (186)
T PRK10078        148 ---RY-QPQDCHTLNNDGSLRQSVDTLLTLLHLSQK  179 (186)
T ss_pred             ---hh-ccCCEEEEeCCCCHHHHHHHHHHHHhhcCc
Confidence               11 134567788888999999999887755433

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.59  E-value=2.1e-15  Score=116.16  Aligned_cols=167  Identities=23%  Similarity=0.327  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCChhhH-----HHHHHhhcCCCC---CH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSEYGT-----TILNTIKEGKIV---PS   70 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~~~~-----~~~~~l~~~~~~---~~   70 (196)
                      +++|.|||||||||++++++   |+..++.|++.-            +.+....+...     +..+++..+...   +.
T Consensus        31 f~vllGPSGcGKSTlLr~IA---GLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k  107 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIA---GLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK  107 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence            67779999999999999999   999998887741            11222222211     245555554332   23


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           71 EVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      ......+.+....-.-.. .++++|    .++.|++++++++-..|.+ ++||+|...+..+++..    .......+++
T Consensus       108 ~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaRAlVr~P~v-~L~DEPlSnLDa~lR~~----mr~ei~~lh~  181 (338)
T COG3839         108 AEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKV-FLLDEPLSNLDAKLRVL----MRSEIKKLHE  181 (338)
T ss_pred             HHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHHHHhcCCCE-EEecCchhHhhHHHHHH----HHHHHHHHHH
Confidence            334444444444322333 255544    5699999999999999997 88999999888888755    1112333444


Q ss_pred             HH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHH
Q 029287          147 RL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRA  186 (196)
Q Consensus       147 ~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~  186 (196)
                      ++   ..|-+|+...+...+++..++.   |...+++.++++.-.+
T Consensus       182 ~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n  227 (338)
T COG3839         182 RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN  227 (338)
T ss_pred             hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence            43   3688999988888888655554   4456788888876443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.59  E-value=7.9e-16  Score=119.09  Aligned_cols=168  Identities=23%  Similarity=0.345  Sum_probs=111.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCChhhH-----HHHHHhhcCCC----C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSEYGT-----TILNTIKEGKI----V   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~~~~-----~~~~~l~~~~~----~   68 (196)
                      -+++|.|||||||||++++|+   |+..++.|.+.            ++.+....+.+.     .+.+++..|..    .
T Consensus        32 ef~~lLGPSGcGKTTlLR~IA---Gfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~  108 (352)
T COG3842          32 EFVTLLGPSGCGKTTLLRMIA---GFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL  108 (352)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC
Confidence            367789999999999999999   99998888663            222222222211     24555555443    2


Q ss_pred             CHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHH
Q 029287           69 PSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTV  144 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~  144 (196)
                      ........+.+++.......+ .+++|    .++.|++++++++...|.+ ++||+|...+...++..    .......+
T Consensus       109 ~~~~i~~rv~e~L~lV~L~~~-~~R~p~qLSGGQqQRVALARAL~~~P~v-LLLDEPlSaLD~kLR~~----mr~Elk~l  182 (352)
T COG3842         109 KKAEIKARVEEALELVGLEGF-ADRKPHQLSGGQQQRVALARALVPEPKV-LLLDEPLSALDAKLREQ----MRKELKEL  182 (352)
T ss_pred             CHHHHHHHHHHHHHHcCchhh-hhhChhhhChHHHHHHHHHHHhhcCcch-hhhcCcccchhHHHHHH----HHHHHHHH
Confidence            334455666666665444433 45544    5699999999999999999 88999998777777655    11122222


Q ss_pred             HHHH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHH
Q 029287          145 RKRL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRA  186 (196)
Q Consensus       145 ~~~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~  186 (196)
                      .++.   -.|.+|+...+..++++..++.   |..-+++++++..-.+
T Consensus       183 q~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~  230 (352)
T COG3842         183 QRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT  230 (352)
T ss_pred             HHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence            2222   3577888888888887655543   5566889999877543

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.59  E-value=5.4e-14  Score=103.23  Aligned_cols=38  Identities=32%  Similarity=0.531  Sum_probs=30.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELL   44 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~   44 (196)
                      .++++|+|.|++||||||+++.|++.++   +..++.|+.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~   44 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY   44 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence            4679999999999999999999999983   3445665554

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.58  E-value=1.3e-14  Score=104.82  Aligned_cols=148  Identities=16%  Similarity=0.249  Sum_probs=87.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCc---eechhHHHHHHHhc----------CC------hhhHHHHHHhhcCCC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLT---HLSAGELLRREIAS----------NS------EYGTTILNTIKEGKI   67 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~---~i~~~~~~~~~~~~----------~~------~~~~~~~~~l~~~~~   67 (196)
                      .+..+|+|.|+|||||||+++.|.+.++..   .++.|+++...-..          +.      +...+-...+..|..
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~   85 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP   85 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence            456899999999999999999999999844   56666665321110          00      111122233344433


Q ss_pred             CC----HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-CCCCCcHH
Q 029287           68 VP----SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-GRVDDNID  142 (196)
Q Consensus        68 ~~----~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~~~~~  142 (196)
                      +.    +...+....+.....+...+|++|+..-..      +.+....|+.||+|+|.+.+..|...|.- .|.    .
T Consensus        86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d------~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg----~  155 (218)
T COG0572          86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD------ERLRDLMDLKIFVDTDADVRLIRRIKRDVQERG----R  155 (218)
T ss_pred             ccccccchhcccccCCccccCCCcEEEEeccccccc------HHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhC----C
Confidence            22    222222222233334567788999753322      22333579999999999999999988841 121    1


Q ss_pred             HHHHHHHHHHhchHhHHHHHHh
Q 029287          143 TVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      .++..++.|.....+..+.|-+
T Consensus       156 ~~e~vi~qy~~~vkp~~~~fIe  177 (218)
T COG0572         156 DLESVIEQYVKTVRPMYEQFIE  177 (218)
T ss_pred             CHHHHHHHHHHhhChhhhhccC
Confidence            2333344666666666666655

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.57  E-value=9.9e-14  Score=98.93  Aligned_cols=159  Identities=16%  Similarity=0.195  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCC------C-HHHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV------P-SEVTVSLIQKEME   82 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~-~~~~~~~i~~~l~   82 (196)
                      .+++|.|++||||||+++.|+..++..+++.+++....         ..+.. ..+...      + ...........+.
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~   73 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDKM-SQGIPLTDEDRLPWLERLNDASYSLYK   73 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHHH-hcCCCCCcccchHHHHHHHHHHHHHHh
Confidence            36888999999999999999999888888876542210         01110 011111      1 1122222222222


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHH
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYY  162 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (196)
                      .. ..++|+-.+ .....+..+ +... .|-.+|+|++|++++.+|+.+|..  ...+.+.+..+...++....      
T Consensus        74 ~~-~~g~iv~s~-~~~~~R~~~-r~~~-~~~~~v~l~a~~~~l~~Rl~~R~~--~~~~~~vl~~Q~~~~e~~~~------  141 (176)
T PRK09825         74 KN-ETGFIVCSS-LKKQYRDIL-RKSS-PNVHFLWLDGDYETILARMQRRAG--HFMPPDLLQSQFDALERPCA------  141 (176)
T ss_pred             cC-CCEEEEEEe-cCHHHHHHH-HhhC-CCEEEEEEeCCHHHHHHHHhcccC--CCCCHHHHHHHHHHcCCCCC------
Confidence            22 345555222 233333333 3233 455679999999999999999953  23477777777776665422      


Q ss_pred             HhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          163 ARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       163 ~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                       ....++.||++++++.+..++...+..+
T Consensus       142 -~e~~~~~~d~~~~~~~~~~~~~~~~~~~  169 (176)
T PRK09825        142 -DEHDIARIDVNHDIENVTEQCRQAVQAF  169 (176)
T ss_pred             -CcCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence             2235889999999888877766666543

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.57  E-value=7.2e-13  Score=94.93  Aligned_cols=173  Identities=14%  Similarity=0.258  Sum_probs=93.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc----CC--hhhHHHHHHh--------------hcCCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS----NS--EYGTTILNTI--------------KEGKIV   68 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~----~~--~~~~~~~~~l--------------~~~~~~   68 (196)
                      .++|+|.||+||||||+++.|+++||+.+++.|-++|..-..    ..  .....+.+..              .+|..+
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv   83 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV   83 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence            489999999999999999999999999999999988753211    11  1111111111              111122


Q ss_pred             CHHHH-------------HHHHHHHHh-----cCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH
Q 029287           69 PSEVT-------------VSLIQKEME-----SSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV  129 (196)
Q Consensus        69 ~~~~~-------------~~~i~~~l~-----~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl  129 (196)
                      .+...             .+.+.+.+.     .... .++|+||=-        +..-..+..++-|||+++++++.+|.
T Consensus        84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRD--------iGTvV~PdA~lKiFLtAS~e~RA~RR  155 (222)
T COG0283          84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRD--------IGTVVFPDAELKIFLTASPEERAERR  155 (222)
T ss_pred             hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCC--------CcceECCCCCeEEEEeCCHHHHHHHH
Confidence            11100             111111111     1112 446677521        11123457788999999999998888


Q ss_pred             hhccCCCC-CCcHHHHHHHHH--HHHhchHhHHHHHHhcCcEEEEe-CCCCHhHHHHHHHHHHHh
Q 029287          130 LNRNEGRV-DDNIDTVRKRLQ--VFKALNLPVINYYARRGKLYTIN-AVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       130 ~~r~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~I~-~~~~~~~v~~~i~~~i~~  190 (196)
                      -+...... ....+.+.+.+.  -+....+...- +......+.|| .+.++++|.++|...+.+
T Consensus       156 ~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~P-Lk~A~DA~~iDTs~msieeVv~~il~~~~~  219 (222)
T COG0283         156 YKQLQAKGFSEVFEELLAEIKERDERDSNRAVAP-LKPAEDALLLDTSSLSIEEVVEKILELIRQ  219 (222)
T ss_pred             HHHHHhccCcchHHHHHHHHHHhhhccccCcCCC-CcCCCCeEEEECCCCcHHHHHHHHHHHHHH
Confidence            76632222 111222222211  11111111000 01123445666 578999999999887763

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.56  E-value=4.3e-13  Score=94.58  Aligned_cols=154  Identities=10%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             EcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH-------HHHHHHHHHHHhcCCCC
Q 029287           15 LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS-------EVTVSLIQKEMESSDSK   87 (196)
Q Consensus        15 ~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~i~~~l~~~~~~   87 (196)
                      +|+|||||||+++.|++.+|..+++.+.+..+..         ++. ...|....+       ............. ...
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   69 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRT-NKV   69 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHc-CCc
Confidence            5999999999999999999998888865421110         000 000111100       1111222222221 233


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCc
Q 029287           88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGK  167 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (196)
                      .+|+ ........+..+..  ...|-.+|+|++|++++.+|+.+|..+  ..+.+.+..+...++....      .+ ..
T Consensus        70 ~viv-~s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~R~~~--~a~~~vl~~Q~~~~ep~~~------~e-~~  137 (163)
T PRK11545         70 SLIV-CSALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKARKGH--FFKTQMLVTQFETLQEPGA------DE-TD  137 (163)
T ss_pred             eEEE-EecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHhccCC--CCCHHHHHHHHHHcCCCCC------CC-CC
Confidence            3344 32222333333332  234556699999999999999999532  2477777777666654422      11 25


Q ss_pred             EEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          168 LYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       168 ~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ++.||+..+++++...+...+.+.
T Consensus       138 ~~~id~~~~~~~~~~~~~~~~~~~  161 (163)
T PRK11545        138 VLVVDIDQPLEGVVASTIEVIKKG  161 (163)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHHh
Confidence            688999999998888877776543

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.55  E-value=1.2e-13  Score=100.99  Aligned_cols=167  Identities=16%  Similarity=0.231  Sum_probs=92.9

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHH-----
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSE-----   71 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~-----   71 (196)
                      +..+.+|+|+|||||||||+++.|.+.. .+..... .. .+....+..        ....+...+..+..+...     
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~-~t-tr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~   87 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVT-AT-TRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN   87 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCccccccc-cc-CCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence            4567899999999999999999998652 1111110 00 000001100        112233444444333211     


Q ss_pred             ---HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh--HHHHHHHhhccCCCCCCcHHHHHH
Q 029287           72 ---VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE--EEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        72 ---~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~--~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                         .....+...+..  +..+|++.-.   .....+.   ...|+.++++++|+  +++.+|+.+|.    .++.+.+.+
T Consensus        88 ~YGt~~~~i~~~~~~--g~~vi~~~~~---~g~~~l~---~~~pd~~~if~~pps~e~l~~Rl~~R~----~~~~~~~~~  155 (206)
T PRK14738         88 YYGVPKAPVRQALAS--GRDVIVKVDV---QGAASIK---RLVPEAVFIFLAPPSMDELTRRLELRR----TESPEELER  155 (206)
T ss_pred             eecCCHHHHHHHHHc--CCcEEEEcCH---HHHHHHH---HhCCCeEEEEEeCCCHHHHHHHHHHcC----CCCHHHHHH
Confidence               112344455543  4556676432   1112222   23588888888865  57899999872    335566666


Q ss_pred             HHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          147 RLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      |+..+.....     ......+++||++.+++++.+++.+.+...
T Consensus       156 Rl~~~~~e~~-----~~~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        156 RLATAPLELE-----QLPEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             HHHHHHHHHh-----cccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            6654322111     012346778999999999999998888553

>PLN02199 shikimate kinase

Probab=99.55  E-value=8.6e-13  Score=99.69  Aligned_cols=166  Identities=16%  Similarity=0.175  Sum_probs=95.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      ...|+|+|++||||||+++.|++.+|+.+++.|.++.+...     +..+.+.+. .|...+.....+.+.+....  ..
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~--~~  174 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSR--YQ  174 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc--CC
Confidence            35788899999999999999999999999999998877532     112333332 23323333334444443332  23


Q ss_pred             cEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc-cCCCCCC---cHHH----HHHHHHHHHhchHh
Q 029287           88 KFLID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR-NEGRVDD---NIDT----VRKRLQVFKALNLP  157 (196)
Q Consensus        88 ~~iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r-~~~~~~~---~~~~----~~~~~~~~~~~~~~  157 (196)
                      .+|.-  |.+.....+..+    .  -.++|||++|++.+.+|+... ...|+--   +.+.    .+.....|.+.   
T Consensus       175 ~VIStGGG~V~~~~n~~~L----~--~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R---  245 (303)
T PLN02199        175 VVVSTGGGAVIRPINWKYM----H--KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDER---  245 (303)
T ss_pred             EEEECCCcccCCHHHHHHH----h--CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHH---
Confidence            33321  122223333322    1  267899999999999999852 1123211   1111    11122334333   


Q ss_pred             HHHHHHhcCcEEEEe-------------CCCCHhHHHHHHHHHHHhhhh
Q 029287          158 VINYYARRGKLYTIN-------------AVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       158 ~~~~~~~~~~~~~I~-------------~~~~~~~v~~~i~~~i~~~~~  193 (196)
                       ...|.. +.+ .|+             .+.+++++..+|.+.+.++++
T Consensus       246 -~plY~~-Ad~-~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~  291 (303)
T PLN02199        246 -GEAYTN-ANA-RVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLE  291 (303)
T ss_pred             -HHHHHh-CCE-EEecccccccccccccCCCCHHHHHHHHHHHHHHHHh
Confidence             223333 223 333             457899999998888887765

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.54  E-value=3.6e-13  Score=93.76  Aligned_cols=131  Identities=15%  Similarity=0.189  Sum_probs=77.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCC----H---HHHHHHHHHHHhc
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP----S---EVTVSLIQKEMES   83 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~~~i~~~l~~   83 (196)
                      +++|.|++||||||+++.|++.++..+++.|.+.....          ...+..+....    .   ..........+. 
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-   69 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKLA-   69 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHHH-
Confidence            46789999999999999999999999999877654311          00011111111    0   111112222221 


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287           84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus        84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~  154 (196)
                      ..+..+|++.-......+..+.......+-.++++++|++++.+|+.+|...  ....+.+..+...|+..
T Consensus        70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~--~~~~~~~~~~~~~~~~p  138 (150)
T cd02021          70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGH--FMPADLLDSQFETLEPP  138 (150)
T ss_pred             hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccC--CCCHHHHHHHHHHhcCC
Confidence            1345577775544544554444432223455799999999999999998322  22355666655555544

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.54  E-value=7.8e-13  Score=94.53  Aligned_cols=30  Identities=20%  Similarity=0.418  Sum_probs=27.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      .++|+|.|+.|+||||++++|++++|..++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            579999999999999999999999996554

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.54  E-value=7.9e-14  Score=96.20  Aligned_cols=115  Identities=25%  Similarity=0.418  Sum_probs=73.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhh---HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYG---TTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      +|++.|+|||||||+++.|++.++..+++.|.+.........+..   ....+..       ...+...+...+.  .+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~--~g~   71 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALR--NGN   71 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHH--TT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHH--cCC
Confidence            578899999999999999999999999999877654432221110   0010000       0122233444444  345


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhccC
Q 029287           88 KFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRNE  134 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~~  134 (196)
                      .+|+|........+..+..+..  ..+..+|+|++|.+++.+|+.+|..
T Consensus        72 ~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~  120 (143)
T PF13671_consen   72 SVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR  120 (143)
T ss_dssp             EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred             CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence            5788877666666655555431  2355669999999999999999953

...

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.54  E-value=3.6e-13  Score=109.54  Aligned_cols=40  Identities=30%  Similarity=0.405  Sum_probs=36.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE   47 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~   47 (196)
                      .+++|+|.||+||||||+++.|++++|+.+++.|.++|..
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            4589999999999999999999999999999999988763

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.54  E-value=8.3e-13  Score=102.27  Aligned_cols=164  Identities=13%  Similarity=0.206  Sum_probs=93.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      ....|+|+|++||||||+++.|++.+|+.+++.+..+.+....  .    +.+... .|...........+.+.+..  .
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~--~----i~ei~~~~G~~~fr~~e~~~l~~ll~~--~  203 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGL--S----VSEIFALYGQEGYRRLERRALERLIAE--H  203 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCC--C----HHHHHHHHCHHHHHHHHHHHHHHHHhh--C
Confidence            4468999999999999999999999999999998776554221  1    112111 12111112223334443332  2


Q ss_pred             CcEEEeCCCC---CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC----CCcHHHHHHHHHHHHhchHhHH
Q 029287           87 KKFLIDGFPR---SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV----DDNIDTVRKRLQVFKALNLPVI  159 (196)
Q Consensus        87 ~~~iid~~~~---~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~  159 (196)
                      ...|+.+-..   ....+..+   .  ...++|||++|++++.+|+.+|...|.    ....+.+++   .+..+ .+  
T Consensus       204 ~~~VI~~Ggg~v~~~~~~~~l---~--~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~---~~~~R-~~--  272 (309)
T PRK08154        204 EEMVLATGGGIVSEPATFDLL---L--SHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRR---ILASR-EP--  272 (309)
T ss_pred             CCEEEECCCchhCCHHHHHHH---H--hCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHH---HHHHH-HH--
Confidence            2234443211   11222221   1  246789999999999999998743332    112333333   22222 11  


Q ss_pred             HHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhhh
Q 029287          160 NYYARRGKLYTINAV-GTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       160 ~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~~  193 (196)
                       +|. ... ++|+++ .+++++.+.|.+.+..++.
T Consensus       273 -~y~-~ad-~~I~t~~~s~ee~~~~I~~~l~~~~~  304 (309)
T PRK08154        273 -LYA-RAD-AVVDTSGLTVAQSLARLRELVRPALG  304 (309)
T ss_pred             -HHH-hCC-EEEECCCCCHHHHHHHHHHHHHHHhc
Confidence             121 123 356655 4899999999988877653

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.52  E-value=3.9e-12  Score=90.80  Aligned_cols=158  Identities=14%  Similarity=0.119  Sum_probs=84.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc--eechhHHHHHHHhcCChhhHHHHHHhhc-C--CCCCH-------HHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT--HLSAGELLRREIASNSEYGTTILNTIKE-G--KIVPS-------EVTVSLI   77 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~-------~~~~~~i   77 (196)
                      .+|+|.|+|||||||+++.|++.++..  +++.|++.......... .   .+.+.. +  ...+.       ......+
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~~   78 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-A---EGGIEFDGDGGVSPGPEFRLLEGAWYEAV   78 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-c---ccccccCccCCcccchHHHHHHHHHHHHH
Confidence            478899999999999999999998643  44666554332111000 0   000000 0  00011       1112223


Q ss_pred             HHHHhcCCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchH
Q 029287           78 QKEMESSDSKKFLIDGFPR-SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNL  156 (196)
Q Consensus        78 ~~~l~~~~~~~~iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~  156 (196)
                      ...+.  .+..+|+|.... ....+..+.. +...+-..|+++||.+++.+|+.+|.  ..  .......+...+     
T Consensus        79 ~~~l~--~G~~VIvD~~~~~~~~~r~~~~~-~~~~~~~~v~l~~~~~~l~~R~~~R~--~~--~~~~~~~~~~~~-----  146 (175)
T cd00227          79 AAMAR--AGANVIADDVFLGRAALQDCWRS-FVGLDVLWVGVRCPGEVAEGRETARG--DR--VPGQARKQARVV-----  146 (175)
T ss_pred             HHHHh--CCCcEEEeeeccCCHHHHHHHHH-hcCCCEEEEEEECCHHHHHHHHHhcC--Cc--cchHHHHHHHHh-----
Confidence            33333  356678886433 3333333332 33345567999999999999999883  11  111111111111     


Q ss_pred             hHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287          157 PVINYYARRGKLYTINAV-GTVDEIFEQVRAVF  188 (196)
Q Consensus       157 ~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i  188 (196)
                           .......+.||++ .++++..++|...+
T Consensus       147 -----~~~~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         147 -----HAGVEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             -----cCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence                 1112245678876 47888887776543

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.51  E-value=1.1e-12  Score=108.46  Aligned_cols=168  Identities=20%  Similarity=0.251  Sum_probs=97.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      +...|+|+|++||||||+++.|++.+|+.++|.|+.+.+..      +..+.+.+. .|...+...-.+.+.+.+..  .
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~--~   76 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED--F   76 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence            44678889999999999999999999999999999887643      233444442 23333333334444444332  2


Q ss_pred             CcEE-Ee-CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           87 KKFL-ID-GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        87 ~~~i-id-~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      ..+| +. |.+.....+..+...+. ....+|||++|++++.+|+..+ ..|+--.....++-.+.|... .+....++ 
T Consensus        77 ~~VIs~GGG~v~~~~n~~~L~~~~~-~~g~vv~L~~~~~~l~~Rl~~~-~~RPll~~~~~~~~~~l~~~R-~~~Y~~~A-  152 (542)
T PRK14021         77 DGIFSLGGGAPMTPSTQHALASYIA-HGGRVVYLDADPKEAMERANRG-GGRPMLNGDANKRWKKLFKQR-DPVFRQVA-  152 (542)
T ss_pred             CeEEECCCchhCCHHHHHHHHHHHh-cCCEEEEEECCHHHHHHHHhCC-CCCCCCCCCcHHHHHHHHHHH-HHHHHhhC-
Confidence            2333 22 23444444544433222 3357899999999999999754 234322111111111233333 22222222 


Q ss_pred             cCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287          165 RGKLYTINA-VGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       165 ~~~~~~I~~-~~~~~~v~~~i~~~i~~  190 (196)
                        . +.|++ ..+++++.++|.+.+..
T Consensus       153 --d-~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        153 --N-VHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             --C-EEEECCCCCHHHHHHHHHHHHHh
Confidence              2 34554 56899999888777654

>PRK07261 topology modulation protein; Provisional

Probab=99.51  E-value=1.3e-13  Score=97.99  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=69.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      +.|+|+|+|||||||+++.|++.+++.+++.|.+.....                ....+.......+...+..   ..|
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~~---~~w   61 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLLK---HDW   61 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHhC---CCE
Confidence            468899999999999999999999999988876643210                0111223344445555542   349


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      |+||..........+.     ..|.+|+||+|...+..|+.+|.
T Consensus        62 Iidg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR~  100 (171)
T PRK07261         62 IIDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKRY  100 (171)
T ss_pred             EEcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHHH
Confidence            9999864422222222     46899999999999999999883

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.50  E-value=1.1e-13  Score=99.16  Aligned_cols=109  Identities=21%  Similarity=0.326  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------------HHHhcCCh------hhHHHHHHhhc---C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------------REIASNSE------YGTTILNTIKE---G   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------------~~~~~~~~------~~~~~~~~l~~---~   65 (196)
                      -+++|+|||||||||++++|.   ++..++.|.+.-               +......+      +-..+.+....   -
T Consensus        29 evv~iiGpSGSGKSTlLRclN---~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v  105 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLN---GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV  105 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHH---CCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence            478899999999999999999   777766665432               22222211      11111111111   0


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           66 KIVPSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        66 ~~~~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...+.....+...+.|...+-... .+.||    .+++||+++++++...|++ +++|+|+.
T Consensus       106 ~~~~k~eA~~~A~~lL~~VGL~~k-a~~yP~qLSGGQqQRVAIARALaM~P~v-mLFDEPTS  165 (240)
T COG1126         106 KKLSKAEAREKALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAMDPKV-MLFDEPTS  165 (240)
T ss_pred             cCCCHHHHHHHHHHHHHHcCchhh-hhhCccccCcHHHHHHHHHHHHcCCCCE-EeecCCcc
Confidence            112233334444445543332222 44455    4699999999999999999 77999983

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.50  E-value=8.8e-13  Score=94.25  Aligned_cols=107  Identities=18%  Similarity=0.271  Sum_probs=61.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH----HHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE----VTVSLIQ   78 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~i~   78 (196)
                      .+++|+++|++||||||+++.|++.++     ..+++.+. +++.....             +......    .....+.
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~-------------~~~~~~~~~~~~~~~~l~   71 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHY-------------GYDKQSRIEMALKRAKLA   71 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCC-------------CCCHHHHHHHHHHHHHHH
Confidence            467999999999999999999999884     45555433 33322111             0000000    1111222


Q ss_pred             HHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287           79 KEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN  131 (196)
Q Consensus        79 ~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~  131 (196)
                      ..+. ..+..+|+++.... .......+... .+.+++||++|++++.+|+.+
T Consensus        72 ~~l~-~~g~~VI~~~~~~~-~~~~~~~~~~~-~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         72 KFLA-DQGMIVIVTTISMF-DEIYAYNRKHL-PNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             HHHH-hCCCEEEEEeCCcH-HHHHHHHHhhc-CCeEEEEEeCCHHHHHHhchh
Confidence            2222 23456778765422 22222222222 456789999999999999864

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.48  E-value=4.3e-12  Score=95.58  Aligned_cols=160  Identities=18%  Similarity=0.299  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC---C--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYG---L--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD   85 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~---~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~   85 (196)
                      +|+++|+|||||||+++.|++.++   .  .+++. +.++........   ...+..       .......+...+..  
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~---~~e~~~-------~~~~~~~i~~~l~~--   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKE---KYEEFI-------RDSTLYLIKTALKN--   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhH---HhHHHH-------HHHHHHHHHHHHhC--
Confidence            478899999999999999999873   2  34444 334333211111   011111       11223344444443  


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287           86 SKKFLIDGFPRSEENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYA  163 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (196)
                      +..+|+|+.......+..+...  -...+..+||+++|.+.+.+|...|.  .. ...+.+.+....|+....   . +.
T Consensus        68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~--~~-~~~~~i~~l~~r~e~p~~---~-~~  140 (249)
T TIGR03574        68 KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG--EK-IPNEVIKDMYEKFDEPGT---K-YS  140 (249)
T ss_pred             CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC--CC-CCHHHHHHHHHhhCCCCC---C-CC
Confidence            4557889865433333333221  12356778999999999999998873  21 234455554444443321   0 00


Q ss_pred             hcCcEEEEeCCC--CHhHHHHHHHHHHHh
Q 029287          164 RRGKLYTINAVG--TVDEIFEQVRAVFAA  190 (196)
Q Consensus       164 ~~~~~~~I~~~~--~~~~v~~~i~~~i~~  190 (196)
                      -..+.+.||.+.  +++++.+.|.+.+..
T Consensus       141 wd~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       141 WDLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             ccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            012567788765  668888888766543

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.48  E-value=1.7e-12  Score=91.09  Aligned_cols=152  Identities=20%  Similarity=0.289  Sum_probs=85.6

Q ss_pred             CCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCcEE-Ee-CC
Q 029287           18 PGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKKFL-ID-GF   94 (196)
Q Consensus        18 ~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~~i-id-~~   94 (196)
                      +||||||+++.|++.+|+.++|.|+.+.+...      ..+.+.+.. |...+...-.+.+.+.+...  ..+| +. |.
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~~~--~~VIa~GGG~   72 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLKEN--NCVIACGGGI   72 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEEEE-TTG
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhccC--cEEEeCCCCC
Confidence            69999999999999999999999998866432      233333321 22112222334444444432  3332 22 24


Q ss_pred             CCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeC
Q 029287           95 PRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINA  173 (196)
Q Consensus        95 ~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~  173 (196)
                      +.....+..+.     ....+|||+.|++.+.+|+..+.. |+.- ...........+. ...+.+..+    ..++++.
T Consensus        73 ~~~~~~~~~L~-----~~g~vI~L~~~~~~l~~Rl~~~~~-Rp~l~~~~~~~~~~~~~~-~R~~~Y~~~----a~~~v~~  141 (158)
T PF01202_consen   73 VLKEENRELLK-----ENGLVIYLDADPEELAERLRARDN-RPLLKGKMEHEEILELLF-EREPLYEQA----ADIVVDT  141 (158)
T ss_dssp             GGSHHHHHHHH-----HHSEEEEEE--HHHHHHHHHHHCT-SGGTCSHHHHHHHHHHHH-HHHHHHHHH----SSEEEET
T ss_pred             cCcHHHHHHHH-----hCCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCChHHHHHHHHH-HHHHHHHhc----CeEEEeC
Confidence            44555555544     346689999999999999987742 3222 1111111122222 222223232    3356777


Q ss_pred             CCCH-hHHHHHHHHHH
Q 029287          174 VGTV-DEIFEQVRAVF  188 (196)
Q Consensus       174 ~~~~-~~v~~~i~~~i  188 (196)
                      +..+ +++.++|.+.+
T Consensus       142 ~~~~~~~i~~~i~~~l  157 (158)
T PF01202_consen  142 DGSPPEEIAEEILEFL  157 (158)
T ss_dssp             SSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            6665 89988887765

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.47  E-value=3.4e-12  Score=92.44  Aligned_cols=120  Identities=14%  Similarity=0.168  Sum_probs=72.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhh-HHHHH----HhhcCCCCCHH----------H
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYG-TTILN----TIKEGKIVPSE----------V   72 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~----------~   72 (196)
                      .+++|+|.|+|||||||+++.|++.+|+.++..+|++++.+......+ ....+    .-..+....+.          .
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            357999999999999999999999999999999999988776543322 11111    00001111110          1


Q ss_pred             ----HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec-ChHHHHHHHhhcc
Q 029287           73 ----TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC-PEEEMVNRVLNRN  133 (196)
Q Consensus        73 ----~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~-~~~~~~~Rl~~r~  133 (196)
                          +...+...+.  .+..+|+++.......+.....   .. ..++++.+ +++...+|+..|.
T Consensus        82 v~~~L~~va~~~l~--~G~sVIvEgv~l~p~~~~~~~~---~~-v~~i~l~v~d~e~lr~Rl~~R~  141 (197)
T PRK12339         82 IMPGINRVIRRALL--NGEDLVIESLYFHPPMIDENRT---NN-IRAFYLYIRDAELHRSRLADRI  141 (197)
T ss_pred             HHHHHHHHHHHHHH--cCCCEEEEecCcCHHHHHHHHh---cC-eEEEEEEeCCHHHHHHHHHHHh
Confidence                1112222222  4667889987666554422111   12 24466655 5788889999984

>PTZ00301 uridine kinase; Provisional

Probab=99.47  E-value=2.6e-13  Score=99.08  Aligned_cols=175  Identities=16%  Similarity=0.195  Sum_probs=88.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh----C---CceechhHHHHHHHh----------cCChh---hHHHH---HHhhcC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY----G---LTHLSAGELLRREIA----------SNSEY---GTTIL---NTIKEG   65 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~----~---~~~i~~~~~~~~~~~----------~~~~~---~~~~~---~~l~~~   65 (196)
                      -++|+|.|+|||||||+++.|.+.+    |   ...+..|.+++....          .+.+.   ...+.   ..+..|
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g   82 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG   82 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence            3899999999999999999998776    2   224455555432100          00000   00011   122222


Q ss_pred             CCC----CHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           66 KIV----PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        66 ~~~----~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                      ..+    .+..............+...+|++|+..-..      ..+....|+.||+++|.+++..|...|.......+.
T Consensus        83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~------~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~  156 (210)
T PTZ00301         83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN------AELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTF  156 (210)
T ss_pred             CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC------HHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCH
Confidence            211    1111111111111112335667788643101      112225688999999999999999998522112233


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHh----cCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          142 DTVRKRLQVFKALNLPVINYYAR----RGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      +...+   .|...+.+....|..    .+.+ +|...++.+.....+...+...++
T Consensus       157 e~v~~---~~~~~v~~~~~~~I~p~k~~ADi-Ii~~~~~~~~~~~~~~~~~~~~~~  208 (210)
T PTZ00301        157 ESVIE---QYEATVRPMYYAYVEPSKVYADI-IVPSWKDNSVAVGVLRAKLNHDLE  208 (210)
T ss_pred             HHHHH---HHHHhhcccHHHHcCccccCCcE-EEcCCCcchHHHHHHHHHHHHHcc
Confidence            33322   344444443333333    2333 456555656666666666665543

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.47  E-value=5.6e-12  Score=93.36  Aligned_cols=38  Identities=32%  Similarity=0.538  Sum_probs=35.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR   46 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~   46 (196)
                      +++|+|.|++||||||+++.|++++|+.+++.|.++|.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            47999999999999999999999999999999998765

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.47  E-value=7.5e-14  Score=101.73  Aligned_cols=174  Identities=20%  Similarity=0.192  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-------HhcCChhhHHHHHHhhcCCCC---CHH---HHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-------IASNSEYGTTILNTIKEGKIV---PSE---VTVSL   76 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~---~~~---~~~~~   76 (196)
                      =.++|+|.+||||||+++.|+   |+..++.|.+..+.       +..+.+...+-++++.....+   ...   ...+.
T Consensus        54 e~vGiiG~NGaGKSTLlklia---Gi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~e  130 (249)
T COG1134          54 ERVGIIGHNGAGKSTLLKLIA---GIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDE  130 (249)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHH
Confidence            378999999999999999999   98888877663321       122222222223322211111   122   22334


Q ss_pred             HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH-HHHHHHHhch
Q 029287           77 IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR-KRLQVFKALN  155 (196)
Q Consensus        77 i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~-~~~~~~~~~~  155 (196)
                      +.+..+..+.-..=+..|+.++..+++|.-+....||+ +++|+-..+......++-..+.   .+..+ .....+-+|+
T Consensus       131 IieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdI-LllDEvlavGD~~F~~K~~~rl---~e~~~~~~tiv~VSHd  206 (249)
T COG1134         131 IIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDI-LLLDEVLAVGDAAFQEKCLERL---NELVEKNKTIVLVSHD  206 (249)
T ss_pred             HHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCE-EEEehhhhcCCHHHHHHHHHHH---HHHHHcCCEEEEEECC
Confidence            44444443322222677999999999999999999999 7788866333333322200000   00000 0122567788


Q ss_pred             HhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHh
Q 029287          156 LPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       156 ~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~  190 (196)
                      ...+..+|++..|+.   |-..++++++.+...+.+.+
T Consensus       207 ~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~~~~  244 (249)
T COG1134         207 LGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDLAD  244 (249)
T ss_pred             HHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHhhhh
Confidence            889999999888875   77788999999887766544

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.47  E-value=8.2e-14  Score=102.04  Aligned_cols=146  Identities=20%  Similarity=0.292  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH---hcCCh-----------hhHHHHHHhhcCCCC---CHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI---ASNSE-----------YGTTILNTIKEGKIV---PSEV   72 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~---~~~~~-----------~~~~~~~~l~~~~~~---~~~~   72 (196)
                      =+++|.|||||||||+++.++   |+...+.|.+.....   .+..+           .+.++.+++..+...   ....
T Consensus        30 EfvsilGpSGcGKSTLLriiA---GL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e  106 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIA---GLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE  106 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence            377889999999999999999   998888876543221   11111           345555665544332   2333


Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH-HHHHH-
Q 029287           73 TVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI-DTVRK-  146 (196)
Q Consensus        73 ~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~-~~~~~-  146 (196)
                      ....+.+.++..+-.++ -+.||.    +++|++++++++...|++ +++|+|+.-+..--+..    ..+.. ..+++ 
T Consensus       107 ~~~~a~~~L~~VgL~~~-~~~~P~qLSGGMrQRVaiARAL~~~P~l-LLlDEPFgALDalTR~~----lq~~l~~lw~~~  180 (248)
T COG1116         107 ARERAKELLELVGLAGF-EDKYPHQLSGGMRQRVAIARALATRPKL-LLLDEPFGALDALTREE----LQDELLRLWEET  180 (248)
T ss_pred             HHHHHHHHHHHcCCcch-hhcCccccChHHHHHHHHHHHHhcCCCE-EEEcCCcchhhHHHHHH----HHHHHHHHHHhh
Confidence            34456666665554444 555664    699999999999999999 88999994333322211    00111 11221 


Q ss_pred             -HHHHHHhchHhHHHHHHh
Q 029287          147 -RLQVFKALNLPVINYYAR  164 (196)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~  164 (196)
                       ....+.+|+.+.+-+.++
T Consensus       181 ~~TvllVTHdi~EAv~Lsd  199 (248)
T COG1116         181 RKTVLLVTHDVDEAVYLAD  199 (248)
T ss_pred             CCEEEEEeCCHHHHHhhhC
Confidence             123466677777777776

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.47  E-value=5.4e-12  Score=88.07  Aligned_cols=109  Identities=23%  Similarity=0.317  Sum_probs=63.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcEEE
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLI   91 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ii   91 (196)
                      |+|+|++||||||+++.|++.+|+.+++.+.++......  ... .+.+..  +...........+.. +.. ... .|+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~-~~~~~~--~~~~~~~~e~~~~~~-~~~-~~~-~vi   73 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIP-EIFAEE--GEEGFRELEREVLLL-LLT-KEN-AVI   73 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHH-HHHHHH--CHHHHHHHHHHHHHH-Hhc-cCC-cEE
Confidence            678999999999999999999999999998887654322  111 111111  110001111112222 222 123 344


Q ss_pred             eC---CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           92 DG---FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        92 d~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      .+   +......+..+     ....++|||++|++.+.+|+..|.
T Consensus        74 ~~g~~~i~~~~~~~~~-----~~~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          74 ATGGGAVLREENRRLL-----LENGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             ECCCCccCcHHHHHHH-----HcCCeEEEEeCCHHHHHHHhccCC
Confidence            42   21222221111     246788999999999999998873

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.47  E-value=3.7e-13  Score=98.06  Aligned_cols=161  Identities=19%  Similarity=0.257  Sum_probs=95.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC----------------------hhhHHHHHHhhcCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS----------------------EYGTTILNTIKEGKI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~   67 (196)
                      -+++|.|+|||||||+++.|+   |+...+.|++.........                      .....+.+.+.+...
T Consensus        34 e~lgivGeSGsGKSTL~r~l~---Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~  110 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLA---GLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR  110 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHh---cccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence            478999999999999999999   8887777766432211000                      012223333332221


Q ss_pred             CC-HHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           68 VP-SEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        68 ~~-~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                      .. -....+.+.+.+...+-..-..+++|+    ++.||.++++++...|.+ +++|+|...+.-.+...       -+.
T Consensus       111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl-LIlDEptSaLD~siQa~-------Iln  182 (252)
T COG1124         111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL-LILDEPTSALDVSVQAQ-------ILN  182 (252)
T ss_pred             cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE-EEecCchhhhcHHHHHH-------HHH
Confidence            10 011112255555554433334777775    589999999999999999 77999995444433322       111


Q ss_pred             HHHHHH------HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHH
Q 029287          143 TVRKRL------QVFKALNLPVINYYARRGKLYT---INAVGTVDEIF  181 (196)
Q Consensus       143 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~  181 (196)
                      .+.+..      -.|.+|+...+.++|++..++.   +....+.+++.
T Consensus       183 lL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~  230 (252)
T COG1124         183 LLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL  230 (252)
T ss_pred             HHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence            111111      2567899999999999755543   33334444443

>PRK06547 hypothetical protein; Provisional

Probab=99.46  E-value=1.6e-13  Score=97.28  Aligned_cols=125  Identities=17%  Similarity=0.229  Sum_probs=70.5

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHh-hcCCCCCHH--HHHHHHHHHHh
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTI-KEGKIVPSE--VTVSLIQKEME   82 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~--~~~~~i~~~l~   82 (196)
                      +..+++|+|.|++||||||+++.|++.++...++.++++...- ........+.+.+ ..|....-.  ...........
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~   90 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVS   90 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEE
Confidence            4567899999999999999999999999999999888764210 1111111222222 222111000  00000000111


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      ......+|++|......+...+..  ....-++|||++|++++.+|+.+|.
T Consensus        91 l~~~~vVIvEG~~al~~~~r~~~d--~~g~v~~I~ld~~~~vr~~R~~~Rd  139 (172)
T PRK06547         91 VEPGRRLIIEGVGSLTAANVALAS--LLGEVLTVWLDGPEALRKERALARD  139 (172)
T ss_pred             eCCCCeEEEEehhhccHHHHHHhc--cCCCEEEEEEECCHHHHHHHHHhcC
Confidence            123456778876432222111111  1112278999999999999999993

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.46  E-value=5e-12  Score=88.78  Aligned_cols=161  Identities=14%  Similarity=0.189  Sum_probs=93.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHHHH------
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSEVT------   73 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~------   73 (196)
                      +.++++|.||||+||||++++|.+.. -..++++...| .++++..        ....+.+.+..+..+.....      
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR-~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG   80 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTR-KPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG   80 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccC-CCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence            45788999999999999999999998 44444433332 2233332        23346666666655543221      


Q ss_pred             --HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEE-EEeecCh-HHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029287           74 --VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIV-LFFDCPE-EEMVNRVLNRNEGRVDDNIDTVRKRLQ  149 (196)
Q Consensus        74 --~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~-i~ld~~~-~~~~~Rl~~r~~~~~~~~~~~~~~~~~  149 (196)
                        ...+...+..  +..+++|==      +..-.+.....|+.+ ||+..|. +.+.+|+..|    ..++.+.++.|+.
T Consensus        81 T~~~~ve~~~~~--G~~vildId------~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl~  148 (191)
T COG0194          81 TSREPVEQALAE--GKDVILDID------VQGALQVKKKMPNAVSIFILPPSLEELERRLKGR----GTDSEEVIARRLE  148 (191)
T ss_pred             CcHHHHHHHHhc--CCeEEEEEe------hHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHHH
Confidence              3344455553  445555511      122222222344554 5555544 7778888776    6778999998887


Q ss_pred             HHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          150 VFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      .......    .+.+ ...++|  +.+++...+++..++.
T Consensus       149 ~a~~Ei~----~~~~-fdyviv--Ndd~e~a~~~l~~ii~  181 (191)
T COG0194         149 NAKKEIS----HADE-FDYVIV--NDDLEKALEELKSIIL  181 (191)
T ss_pred             HHHHHHH----HHHh-CCEEEE--CccHHHHHHHHHHHHH
Confidence            6555422    2222 222233  3478888888877663

>TIGR00235 udk uridine kinase

Probab=99.45  E-value=1.7e-12  Score=95.10  Aligned_cols=174  Identities=16%  Similarity=0.206  Sum_probs=85.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHH--------HhcCCh-----hhHHHHHH---hhcCCC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRRE--------IASNSE-----YGTTILNT---IKEGKI   67 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~--------~~~~~~-----~~~~~~~~---l~~~~~   67 (196)
                      +...+|+|.|++||||||+++.|...++   +..++.++.+...        .....+     ....+.+.   +..|..
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~   83 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSP   83 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCC
Confidence            3458999999999999999999998875   3445554432110        000000     00111111   111211


Q ss_pred             CC----HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-CCCCCcHH
Q 029287           68 VP----SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-GRVDDNID  142 (196)
Q Consensus        68 ~~----~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~~~~~  142 (196)
                      +.    +..................+|+||++....      ..+....|.+||+++|.+++.+|+..|.. .|.....+
T Consensus        84 v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~------~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~  157 (207)
T TIGR00235        84 IDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD------ERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDS  157 (207)
T ss_pred             EecccceeecCCCCCceEEeCCCCEEEEEehhhhch------HhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHH
Confidence            10    000000000111112235677887653211      12223578999999999999999988731 12222222


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhc---CcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          143 TVRKRLQVFKALNLPVINYYARR---GKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      ..+    .|.....+....+..+   ..-++|+++++.+...+.+...+..
T Consensus       158 ~~~----~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~  204 (207)
T TIGR00235       158 VID----QYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKH  204 (207)
T ss_pred             HHH----HHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHH
Confidence            222    3333333333222211   1224566666767766665554443

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.45  E-value=2.4e-12  Score=91.47  Aligned_cols=161  Identities=16%  Similarity=0.232  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhh---HHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYG---TTILNTIKEGKIVPSEVTVSLIQKEMES   83 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~i~~~l~~   83 (196)
                      +.|+++|+|||||||+++.|++.+.   ..+++.+.=+......+...+   ..+++..       .......+..++. 
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-------~ks~~rlldSalk-   73 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-------LKSVERLLDSALK-   73 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHH-------HHHHHHHHHHHhc-
Confidence            5777899999999999999998872   222222110111111111111   0111111       1122234444444 


Q ss_pred             CCCCcEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhchHhHHH
Q 029287           84 SDSKKFLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-NIDTVRKRLQVFKALNLPVIN  160 (196)
Q Consensus        84 ~~~~~~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  160 (196)
                        +..+|+|.  |-.++...+.+...-...+--+||+.+|+++|.+|-..|+    +. -.+.+++....|++.+...  
T Consensus        74 --n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg----epip~Evl~qly~RfEePn~~~--  145 (261)
T COG4088          74 --NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG----EPIPEEVLRQLYDRFEEPNPDR--  145 (261)
T ss_pred             --ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC----CCCCHHHHHHHHHhhcCCCCCc--
Confidence              55677775  3344554444444334466667999999999999987663    22 3556666556666654311  


Q ss_pred             HHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          161 YYARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       161 ~~~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      .+  ..++++|+......++.+.+...+
T Consensus       146 rW--Dspll~id~~d~~t~~IDfiesvl  171 (261)
T COG4088         146 RW--DSPLLVIDDSDVSTEVIDFIESVL  171 (261)
T ss_pred             cc--cCceEEEecccccccchhHHHHHH
Confidence            11  135667775555556666655544

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.45  E-value=1e-11  Score=88.96  Aligned_cols=162  Identities=15%  Similarity=0.162  Sum_probs=84.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc---eechhHHHHHHHhcCC----hhhHHHHHHhhcCCCCC--H-----HHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT---HLSAGELLRREIASNS----EYGTTILNTIKEGKIVP--S-----EVTVS   75 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~---~i~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~--~-----~~~~~   75 (196)
                      .+++|+|+|||||||+++.|+..++..   .+......+.....+.    -....+......+....  .     .-...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            368889999999999999999877432   1110000010000000    01112222222221100  0     00011


Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhch
Q 029287           76 LIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALN  155 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~  155 (196)
                      .+...+.  .+..+|+++..   .....+...+  ....+|||++|++++.+|+..|  ++.  +.+.+.+++..+....
T Consensus        82 ~i~~~~~--~g~~vv~~g~~---~~~~~~~~~~--~~~~~i~l~~~~~~~~~Rl~~R--~~~--~~~~~~~rl~~~~~~~  150 (179)
T TIGR02322        82 EIDQWLE--AGDVVVVNGSR---AVLPEARQRY--PNLLVVNITASPDVLAQRLAAR--GRE--SREEIEERLARSARFA  150 (179)
T ss_pred             HHHHHHh--cCCEEEEECCH---HHHHHHHHHC--CCcEEEEEECCHHHHHHHHHHc--CCC--CHHHHHHHHHHHhhcc
Confidence            2233333  34556777642   1122222222  2446799999999999999988  332  3455555543322221


Q ss_pred             HhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          156 LPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       156 ~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      .       ....+.+|+++++++++.++|.+.+.
T Consensus       151 ~-------~~~~~~vi~~~~~~ee~~~~i~~~l~  177 (179)
T TIGR02322       151 A-------APADVTTIDNSGSLEVAGETLLRLLR  177 (179)
T ss_pred             c-------ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence            0       23456668888999999999887764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.45  E-value=2.9e-13  Score=98.33  Aligned_cols=165  Identities=24%  Similarity=0.397  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChhhHH-----HHHH----hh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEYGTT-----ILNT----IK   63 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~~~~-----~~~~----l~   63 (196)
                      -+.+|.|+|||||||+.+.+.   |....+.|++.                 ++......+.+..     +.++    ++
T Consensus        35 ei~~iiGgSGsGKStlLr~I~---Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr  111 (263)
T COG1127          35 EILAILGGSGSGKSTLLRLIL---GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR  111 (263)
T ss_pred             cEEEEECCCCcCHHHHHHHHh---ccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH
Confidence            588999999999999999999   77766655542                 2222222232222     1222    22


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecCh-----------HHHHHH
Q 029287           64 EGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPE-----------EEMVNR  128 (196)
Q Consensus        64 ~~~~~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~-----------~~~~~R  128 (196)
                      +....+.....+.+..-++..+-.+.+.+.||.    ++..+.++++++...|++ +++|+|+           +.++.+
T Consensus       112 e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPel-l~~DEPtsGLDPI~a~~~~~LI~~  190 (263)
T COG1127         112 EHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPEL-LFLDEPTSGLDPISAGVIDELIRE  190 (263)
T ss_pred             hhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCE-EEecCCCCCCCcchHHHHHHHHHH
Confidence            344466677777777777776666666777775    589999999999999999 8899998           455555


Q ss_pred             HhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHh
Q 029287          129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       129 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~  190 (196)
                      +....    .-+.        ...+|+.......+++..++.   |-..++++++.+.=...+++
T Consensus       191 L~~~l----g~T~--------i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~q  243 (263)
T COG1127         191 LNDAL----GLTV--------IMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQ  243 (263)
T ss_pred             HHHhh----CCEE--------EEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHH
Confidence            54431    1111        234455555555566544443   66788999987653333333

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.9e-13  Score=102.54  Aligned_cols=165  Identities=23%  Similarity=0.323  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---------------HHhcCChhhH-----HHHHHhhcCCCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---------------EIASNSEYGT-----TILNTIKEGKIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~-----~~~~~l~~~~~~~   69 (196)
                      -.+++.|||||||||++++++   |+...+.|.+...               .+....+++.     ++.+++..|....
T Consensus        29 e~vaLlGpSGaGKsTlLRiIA---GLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~  105 (345)
T COG1118          29 ELVALLGPSGAGKSTLLRIIA---GLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR  105 (345)
T ss_pred             cEEEEECCCCCcHHHHHHHHh---CcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence            478999999999999999999   9888776655311               1111112222     2345565554322


Q ss_pred             -----HHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           70 -----SEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        70 -----~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                           .......+.+.+...+..+ +-++||.    ++.|++++++++...|.+ ++||+|+.-+...+++..    ..-
T Consensus       106 ~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQRVALARALA~eP~v-LLLDEPf~ALDa~vr~~l----r~w  179 (345)
T COG1118         106 KERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQRVALARALAVEPKV-LLLDEPFGALDAKVRKEL----RRW  179 (345)
T ss_pred             ccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHHHHHHHHhhcCCCe-EeecCCchhhhHHHHHHH----HHH
Confidence                 2233334444455434444 4777775    589999999999999998 889999966666555430    001


Q ss_pred             HHHHHHHH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          141 IDTVRKRL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       141 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ...+.++.   ..|.+|+...+...+++.-++.   |...++++++++.
T Consensus       180 Lr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~  228 (345)
T COG1118         180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH  228 (345)
T ss_pred             HHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence            11222221   2456677766666666432221   3445688888755

>TIGR00017 cmk cytidylate kinase

Probab=99.44  E-value=4.8e-12  Score=93.08  Aligned_cols=39  Identities=26%  Similarity=0.447  Sum_probs=35.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE   47 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~   47 (196)
                      +++|+|.||+||||||+++.|++++|+.+++.|.+++..
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            479999999999999999999999999999999887654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.43  E-value=3.8e-12  Score=88.11  Aligned_cols=103  Identities=17%  Similarity=0.278  Sum_probs=63.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcEE
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFL   90 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~i   90 (196)
                      +|+|.|++||||||+++.|++.+|+++++.+.+.......       ..+...... .........+.+ +.  ....||
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~-------~~~~~~~~~-~i~~~l~~~~~~-~~--~~~~~V   69 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK-------LASEVAAIP-EVRKALDERQRE-LA--KKPGIV   69 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH-------HHHHhcccH-hHHHHHHHHHHH-Hh--hCCCEE
Confidence            4789999999999999999999999999987442221100       000000000 001111222222 22  234578


Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r  132 (196)
                      +++.....        .+....+++|||++|++.+.+|+.+|
T Consensus        70 idg~~~~~--------~~~~~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          70 LEGRDIGT--------VVFPDADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             EEeeeeee--------EEcCCCCEEEEEECCHHHHHHHHHHH
Confidence            88754211        11235789999999999999999985

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.41  E-value=2e-13  Score=101.15  Aligned_cols=161  Identities=19%  Similarity=0.303  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-----------HHhcCC-------hhhHHHHHHhhcCCCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-----------EIASNS-------EYGTTILNTIKEGKIV---   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-----------~~~~~~-------~~~~~~~~~l~~~~~~---   68 (196)
                      -+++|+||+||||||+.+.+.   |+.....|.+...           .+.+.+       .+..+..+.+.-|...   
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iL---Gll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g  107 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAIL---GLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG  107 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccc
Confidence            588999999999999999999   8766666555311           122222       2233345555443211   


Q ss_pred             ----CHHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-------HHHHHHHhhccC
Q 029287           69 ----PSEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-------EEMVNRVLNRNE  134 (196)
Q Consensus        69 ----~~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-------~~~~~Rl~~r~~  134 (196)
                          ....-.+.+.++++..+.   ..--+..++.++.|++.+++++...|++ ++||+|+       +..+-++.++..
T Consensus       108 ~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l-llLDEP~~gvD~~~~~~i~~lL~~l~  186 (254)
T COG1121         108 WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL-LLLDEPFTGVDVAGQKEIYDLLKELR  186 (254)
T ss_pred             ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE-EEecCCcccCCHHHHHHHHHHHHHHH
Confidence                111224555566664332   2223666888999999999999999999 8899999       233333333210


Q ss_pred             CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE--EeCCCCHhHHHHH
Q 029287          135 GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT--INAVGTVDEIFEQ  183 (196)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--I~~~~~~~~v~~~  183 (196)
                      .  + ....      ...+|+......++++.-++.  +.+.++++++.+.
T Consensus       187 ~--e-g~tI------l~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~  228 (254)
T COG1121         187 Q--E-GKTV------LMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE  228 (254)
T ss_pred             H--C-CCEE------EEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCH
Confidence            0  0 1111      334455555555555432221  5577888888754

>PRK06696 uridine kinase; Validated

Probab=99.39  E-value=1.1e-11  Score=91.90  Aligned_cols=121  Identities=16%  Similarity=0.092  Sum_probs=67.1

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHh---CCce--echhHHHHHH-----HhcCChh--------hHHHHHHhh----
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNY---GLTH--LSAGELLRRE-----IASNSEY--------GTTILNTIK----   63 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~---~~~~--i~~~~~~~~~-----~~~~~~~--------~~~~~~~l~----   63 (196)
                      .+.+++|+|.|++||||||+++.|++.+   |..+  ++.|+++...     .....+.        ...+.+.+.    
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~   98 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG   98 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence            4578999999999999999999999998   5444  3456654211     1111111        111222211    


Q ss_pred             cCCC--C----CHHHHHHHHH-HHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           64 EGKI--V----PSEVTVSLIQ-KEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        64 ~~~~--~----~~~~~~~~i~-~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      .+..  +    .+........ ..........+|+++...       +...+....|++||+++|.+++.+|+..|.
T Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l-------~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd  168 (223)
T PRK06696         99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFL-------LRPELRDLWDYKIFLDTDFEVSRRRGAKRD  168 (223)
T ss_pred             CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHH-------hhhhHHhhCCEEEEEECCHHHHHHHHHHhh
Confidence            1110  1    1110001000 111112234567787531       222233356899999999999999999884

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.39  E-value=2e-11  Score=87.76  Aligned_cols=162  Identities=17%  Similarity=0.257  Sum_probs=91.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHH--------
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSE--------   71 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~--------   71 (196)
                      ++++|+|.|||||||||+++.|.+.+.-.+....... +...++..        ....+.+.+..+..+...        
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TT-R~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTT-RAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccC-CCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            5789999999999999999999988632222222222 22222211        223345555555444321        


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc--EEEEeecC-hHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPD--IVLFFDCP-EEEMVNRVLNRNEGRVDDNIDTVRKRL  148 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~--~~i~ld~~-~~~~~~Rl~~r~~~~~~~~~~~~~~~~  148 (196)
                      ...+.+...+..  +..+|++--+.+..   .+..   ..|+  ++||+..| .+.+.+|+.+|    ...+.+.+++|+
T Consensus        82 t~~~~i~~~~~~--g~~~i~d~~~~g~~---~l~~---~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~s~e~i~~Rl  149 (186)
T PRK14737         82 TPKAFIEDAFKE--GRSAIMDIDVQGAK---IIKE---KFPERIVTIFIEPPSEEEWEERLIHR----GTDSEESIEKRI  149 (186)
T ss_pred             CcHHHHHHHHHc--CCeEEEEcCHHHHH---HHHH---hCCCCeEEEEEECCCHHHHHHHHHhc----CCCCHHHHHHHH
Confidence            223445555553  55667774332222   2222   2454  57888885 58899999888    334566777776


Q ss_pred             HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          149 QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      ......    .. +..... ++|+++ ++++..+++..++.
T Consensus       150 ~~~~~e----~~-~~~~~D-~vI~N~-dle~a~~ql~~ii~  183 (186)
T PRK14737        150 ENGIIE----LD-EANEFD-YKIIND-DLEDAIADLEAIIC  183 (186)
T ss_pred             HHHHHH----Hh-hhccCC-EEEECc-CHHHHHHHHHHHHh
Confidence            653321    11 122223 345555 88999888877664

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.38  E-value=6.3e-12  Score=107.38  Aligned_cols=38  Identities=24%  Similarity=0.401  Sum_probs=35.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE   47 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~   47 (196)
                      ++|+|.|||||||||+++.|++.+|+.+++.|.++|..
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            48999999999999999999999999999999987763

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.38  E-value=4.8e-13  Score=99.51  Aligned_cols=162  Identities=23%  Similarity=0.318  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-------HH-------HHHhcC-----ChhhHHHHHHhhcCCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-------LR-------REIASN-----SEYGTTILNTIKEGKI---   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-------~~-------~~~~~~-----~~~~~~~~~~l~~~~~---   67 (196)
                      -+++|.||+||||||++++|+   |+.....|++       ..       +.+...     .+.+.+..+....|..   
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~---g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~  105 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLA---GLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL  105 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---ccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence            588999999999999999999   5443333322       11       111111     1223333343333311   


Q ss_pred             --CC--HHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           68 --VP--SEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        68 --~~--~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                        ..  ...-...+.+.++.   .....-.++.++.++.|+.++++++.+.|++ ++||+|+..+.-+-.-.       -
T Consensus       106 ~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i-LLLDEPTs~LDi~~Q~e-------v  177 (258)
T COG1120         106 GLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI-LLLDEPTSHLDIAHQIE-------V  177 (258)
T ss_pred             ccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE-EEeCCCccccCHHHHHH-------H
Confidence              11  11112234334443   2222223677888999999999999999999 88999993322211111       0


Q ss_pred             HHHHHHH------HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          141 IDTVRKR------LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       141 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                      .+.+.+.      ....-.|+.-.+..||++..++.   |.+.+++++++.
T Consensus       178 l~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT  228 (258)
T COG1120         178 LELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT  228 (258)
T ss_pred             HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence            0000000      01233345555667777544443   667788888763

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=99.38  E-value=1.2e-10  Score=81.99  Aligned_cols=76  Identities=12%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             HHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc---HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhH
Q 029287          103 AFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN---IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDE  179 (196)
Q Consensus       103 ~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~  179 (196)
                      ++.......+|.+|||.++|++|.+|+.+|  .|.++.   .+.+++.-..+++.-.....-+....+++++|++.+.|-
T Consensus       145 ~i~~~~~v~~dgiIYLrasPetc~~Ri~~R--~R~EE~gipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDad~n~df  222 (244)
T KOG4235|consen  145 WILRSMDVSLDGIIYLRASPETCYKRIYLR--AREEEKGIPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDADHNMDF  222 (244)
T ss_pred             HHHhccccccceEEEeecChHHHHHHHHHH--hhhhhcCCcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEecccchhH
Confidence            333344567999999999999999999999  555553   344444333333332222222234689999998876554


Q ss_pred             H
Q 029287          180 I  180 (196)
Q Consensus       180 v  180 (196)
                      .
T Consensus       223 ~  223 (244)
T KOG4235|consen  223 S  223 (244)
T ss_pred             H
Confidence            3

>PRK12338 hypothetical protein; Provisional

Probab=99.37  E-value=5.7e-11  Score=91.22  Aligned_cols=177  Identities=15%  Similarity=0.250  Sum_probs=91.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCh-------hhHHHHHH--hhcCCCC-C--------
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE-------YGTTILNT--IKEGKIV-P--------   69 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~--l~~~~~~-~--------   69 (196)
                      .|++|+|.|+|||||||+++.|++.+|+.++..++.+++.+....+       +...+..+  +...... +        
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g   82 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG   82 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence            4689999999999999999999999999998778888876554211       01111111  1111111 0        


Q ss_pred             ----HHHHHHHHHHHHhc--CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC--CCCCcH
Q 029287           70 ----SEVTVSLIQKEMES--SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG--RVDDNI  141 (196)
Q Consensus        70 ----~~~~~~~i~~~l~~--~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~--~~~~~~  141 (196)
                          -..+...+...+..  .++..+|++|.-....-... .......+-.++++..+.+...+|...|...  |.....
T Consensus        83 f~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~-~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~l  161 (319)
T PRK12338         83 FEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI-EQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQL  161 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh-hhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhhh
Confidence                11122233333331  35667889997544322111 1100111222344557789999999987311  111111


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ..++.    .......+.+. +....+.+| .+.+.++..+.+.+.+...
T Consensus       162 ~~f~~----Ir~Iq~~l~~~-A~e~~VpvI-~N~did~Tv~~ile~I~e~  205 (319)
T PRK12338        162 EYFRE----NRIIHDHLVEQ-AREHNVPVI-KNDDIDCTVKKMLSYIREV  205 (319)
T ss_pred             hChHH----HHHHHHHHHHh-HhhCCCcee-CCCcHHHHHHHHHHHHHhh
Confidence            11221    11111111222 223344444 4457888888777766543

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.37  E-value=3.9e-11  Score=87.36  Aligned_cols=159  Identities=18%  Similarity=0.239  Sum_probs=81.7

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHh-----CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHH--HH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNY-----GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSL--IQ   78 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--i~   78 (196)
                      +..+.+|+|+|++||||||+++.|+..+     +..+++.+++... +....  +        .............  +.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~-~~~~~--~--------~~~~~~~~~~~~l~~~a   89 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG-LCSDL--G--------FSDADRKENIRRVGEVA   89 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh-hhhcC--C--------cCcccHHHHHHHHHHHH
Confidence            3467899999999999999999999876     3455665544322 11100  0        0000000111111  11


Q ss_pred             HHHhcCCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc---CCCCCCcHHHHHHHHHHHHhc
Q 029287           79 KEMESSDSKKFLIDGFPR-SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN---EGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus        79 ~~l~~~~~~~~iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~---~~~~~~~~~~~~~~~~~~~~~  154 (196)
                      ..+. ..+..+ +..|.. ....+..+...+....-++|||++|++++.+|-. |+   ..+.+ ..   .    .+...
T Consensus        90 ~~~~-~~G~~V-I~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~-r~l~~~~~~~-~~---~----~l~~~  158 (198)
T PRK03846         90 KLMV-DAGLVV-LTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDP-KGLYKKARAG-EI---R----NFTGI  158 (198)
T ss_pred             HHHh-hCCCEE-EEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCc-hhHHHHhhcC-Cc---c----Ccccc
Confidence            1111 123344 444544 4456656655554333347999999999999921 10   00000 00   0    01111


Q ss_pred             hHhHHHHHHh-cCcEEEEe-CCCCHhHHHHHHHHHHHh
Q 029287          155 NLPVINYYAR-RGKLYTIN-AVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       155 ~~~~~~~~~~-~~~~~~I~-~~~~~~~v~~~i~~~i~~  190 (196)
                      ..   . |.. ...-+.|+ ...+++++.++|.+.+..
T Consensus       159 r~---~-Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        159 DS---V-YEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             cc---c-CCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence            11   1 231 11225677 467899998888777654

>smart00072 GuKc Guanylate kinase homologues

Probab=99.37  E-value=1.2e-11  Score=88.99  Aligned_cols=162  Identities=21%  Similarity=0.321  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCC----h----hhHHHHHHhhcCCCCCHH-------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNS----E----YGTTILNTIKEGKIVPSE-------   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~~~-------   71 (196)
                      +++|+|.||+||||+|+++.|.+.+  ++...-. .. .+...++.    +    ....+.+.+..|..++..       
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~-~T-tR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~Y   79 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVS-HT-TRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYY   79 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeee-ec-CCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCc
Confidence            3578899999999999999999886  2222111 01 11111111    1    124566666666554321       


Q ss_pred             -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-HHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029287           72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-EEMVNRVLNRNEGRVDDNIDTVRKRLQ  149 (196)
Q Consensus        72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-~~~~~Rl~~r~~~~~~~~~~~~~~~~~  149 (196)
                       ...+.+...+..  +..+|+|..+.+..+...    ....| ++||+..|. +.+.+|+.+|    ..++.+.+++|+.
T Consensus        80 Gt~~~~i~~~~~~--~~~~ild~~~~~~~~l~~----~~~~~-~vIfi~~~s~~~l~~rl~~R----~~~~~~~i~~rl~  148 (184)
T smart00072       80 GTSKETIRQVAEQ--GKHCLLDIDPQGVKQLRK----AQLYP-IVIFIAPPSSEELERRLRGR----GTETAERIQKRLA  148 (184)
T ss_pred             ccCHHHHHHHHHc--CCeEEEEECHHHHHHHHH----hCCCc-EEEEEeCcCHHHHHHHHHhc----CCCCHHHHHHHHH
Confidence             223345555553  567888877655443322    22233 678898554 6799999877    4446677777766


Q ss_pred             HHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          150 VFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      .....    ...+ .... .+|+++ ++++..+++.+.+.+
T Consensus       149 ~a~~~----~~~~-~~fd-~~I~n~-~l~~~~~~l~~~i~~  182 (184)
T smart00072      149 AAQKE----AQEY-HLFD-YVIVND-DLEDAYEELKEILEA  182 (184)
T ss_pred             HHHHH----Hhhh-ccCC-EEEECc-CHHHHHHHHHHHHHh
Confidence            43332    1122 1122 234444 788888888887754

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PHA03132 thymidine kinase; Provisional

Probab=99.36  E-value=2.3e-11  Score=99.81  Aligned_cols=142  Identities=20%  Similarity=0.203  Sum_probs=78.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhH--HHHHHHhcCChhhHHHHHHhhcCC--CCC-HHHH----------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE--LLRREIASNSEYGTTILNTIKEGK--IVP-SEVT----------   73 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~~~~--~~~-~~~~----------   73 (196)
                      .++|+|+|..||||||+++.|++++|..++...+  -.+....  ...+..+++.+..+.  ... ...+          
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy--~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~P  334 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVY--SNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATP  334 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhcc--ccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhH
Confidence            5899999999999999999999998433322100  0011000  133444544443221  111 1111          


Q ss_pred             ----HHHHHHH---Hh-----cCCCCcEEEeCCCCCHHH----------------HHHHHHHh-CCCCcEEEEeecChHH
Q 029287           74 ----VSLIQKE---ME-----SSDSKKFLIDGFPRSEEN----------------RAAFERIM-GAEPDIVLFFDCPEEE  124 (196)
Q Consensus        74 ----~~~i~~~---l~-----~~~~~~~iid~~~~~~~~----------------~~~~~~~~-~~~p~~~i~ld~~~~~  124 (196)
                          ...+...   ..     ...+..+|+|+|+.+...                ...+...+ ...||++||||+++++
T Consensus       335 fl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~  414 (580)
T PHA03132        335 FRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEE  414 (580)
T ss_pred             HHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHH
Confidence                0111111   11     123467889998865321                01111112 2469999999999999


Q ss_pred             HHHHHhhccCCCCCC---cHHHHHHHHHHHHhc
Q 029287          125 MVNRVLNRNEGRVDD---NIDTVRKRLQVFKAL  154 (196)
Q Consensus       125 ~~~Rl~~r~~~~~~~---~~~~~~~~~~~~~~~  154 (196)
                      +.+|+.+|.  |..+   +.+.+++..+.|...
T Consensus       415 alkRIkkRg--R~~E~~IdleYL~rLre~Y~~l  445 (580)
T PHA03132        415 NLRRVKKRG--RKEEKGINLTYLKELNWAYHAV  445 (580)
T ss_pred             HHHHHHhcC--chhhhcCCHHHHHHHHHHHHHH
Confidence            999999983  3322   455666555555443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.36  E-value=1.2e-12  Score=87.68  Aligned_cols=34  Identities=29%  Similarity=0.616  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL   44 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~   44 (196)
                      +|+|.|+|||||||+++.|++.+|+.+++.|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence            5889999999999999999999999999999853

...

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.35  E-value=3.5e-12  Score=90.49  Aligned_cols=163  Identities=18%  Similarity=0.247  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-------------HHHHHhcCC---hh--hHHHHHHhhcCCCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-------------LRREIASNS---EY--GTTILNTIKEGKIV---   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-------------~~~~~~~~~---~~--~~~~~~~l~~~~~~---   68 (196)
                      -+++|.|++||||||++++|+   .+.+++.|.+             +++.+...+   ..  ..+.++++..-..+   
T Consensus        29 ei~GlLG~NGAGKTT~LRmia---tlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l  105 (245)
T COG4555          29 EITGLLGENGAGKTTLLRMIA---TLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGL  105 (245)
T ss_pred             eEEEEEcCCCCCchhHHHHHH---HhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhh
Confidence            589999999999999999999   5554444433             223222111   01  11122333221111   


Q ss_pred             C---HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh---HHHHHHHhhccCCCCCCcHH
Q 029287           69 P---SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE---EEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        69 ~---~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~---~~~~~Rl~~r~~~~~~~~~~  142 (196)
                      .   -......+.+.+...++-.--+.+|+.+++|++.+++++-.+|++ ++||+|.   +....|....       -..
T Consensus       106 ~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i-~vlDEP~sGLDi~~~r~~~d-------fi~  177 (245)
T COG4555         106 SRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI-LVLDEPTSGLDIRTRRKFHD-------FIK  177 (245)
T ss_pred             hhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe-EEEcCCCCCccHHHHHHHHH-------HHH
Confidence            1   122233344444433321122456899999999999999999999 7799998   3333333221       001


Q ss_pred             HHH--HHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          143 TVR--KRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       143 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ..+  .+...|-+|..+.++..|+...++.   +...++++.+...
T Consensus       178 q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r  223 (245)
T COG4555         178 QLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR  223 (245)
T ss_pred             HhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence            111  1234788899999999999655553   5566787777654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.34  E-value=9.3e-12  Score=91.39  Aligned_cols=162  Identities=24%  Similarity=0.283  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh-----hhHHHHHHhhc---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE-----YGTTILNTIKE---GKI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~-----~~~~~~~~l~~---~~~   67 (196)
                      -++++.|||||||||+++++-   ++...+.|.+              +|+.+.+.-+     ...++.+++..   -..
T Consensus        28 ef~vliGpSGsGKTTtLkMIN---rLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~  104 (309)
T COG1125          28 EFLVLIGPSGSGKTTTLKMIN---RLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG  104 (309)
T ss_pred             eEEEEECCCCCcHHHHHHHHh---cccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcC
Confidence            467779999999999999998   4444444433              2333322211     00111222211   111


Q ss_pred             CCHHHHHHHHHHHHhcCCCCc-EEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHH----HHHHHhhccCCCCC
Q 029287           68 VPSEVTVSLIQKEMESSDSKK-FLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEE----MVNRVLNRNEGRVD  138 (196)
Q Consensus        68 ~~~~~~~~~i~~~l~~~~~~~-~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~----~~~Rl~~r~~~~~~  138 (196)
                      .......+.+.+.+...+... -..++||+    ++.|++.+++++...|.+ +++|+|+.-    ....+..       
T Consensus       105 w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i-lLMDEPFgALDpI~R~~lQ~-------  176 (309)
T COG1125         105 WDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI-LLMDEPFGALDPITRKQLQE-------  176 (309)
T ss_pred             CCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe-EeecCCccccChhhHHHHHH-------
Confidence            123444455556666544432 24888886    589999999999999999 889999922    1111211       


Q ss_pred             CcHHHHHHHH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          139 DNIDTVRKRL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       139 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                       ....+++.+   -.|-+|+...+...+++..++.   |...++++++...
T Consensus       177 -e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~  226 (309)
T COG1125         177 -EIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN  226 (309)
T ss_pred             -HHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence             112222221   2566777777777777544443   4445677777544

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=99.34  E-value=2.1e-10  Score=85.07  Aligned_cols=172  Identities=13%  Similarity=0.261  Sum_probs=94.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec---hhHHHHHHHhcC-------ChhhHH---HHHHhhcC-CCCCH---
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS---AGELLRREIASN-------SEYGTT---ILNTIKEG-KIVPS---   70 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~---~~~~~~~~~~~~-------~~~~~~---~~~~l~~~-~~~~~---   70 (196)
                      .+.+|+++|+.|||||++++.|++.+|+.++.   .|+++......+       .+....   +...-... .....   
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q  149 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ  149 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence            45799999999999999999999999988764   444432211110       000000   11100000 00000   


Q ss_pred             --------HHHHHHHHHHHhcCCCCcEEEeCCCCCHH---------------H--------HHHHHHHhCCCCcEEEEee
Q 029287           71 --------EVTVSLIQKEMESSDSKKFLIDGFPRSEE---------------N--------RAAFERIMGAEPDIVLFFD  119 (196)
Q Consensus        71 --------~~~~~~i~~~l~~~~~~~~iid~~~~~~~---------------~--------~~~~~~~~~~~p~~~i~ld  119 (196)
                              ..-...+...+.  .++++|+++.|.+-=               .        ...+.+  ...|.+|||||
T Consensus       150 ~r~y~~R~~QY~dAL~HiL~--TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~--ll~PHLViYld  225 (393)
T KOG3877|consen  150 DRIYNCRFDQYLDALAHILN--TGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQ--LLWPHLVIYLD  225 (393)
T ss_pred             HHHHHhHHHHHHHHHHHHHh--cCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhh--hcCccEEEEEc
Confidence                    011222333333  467899999887610               0        011111  35899999999


Q ss_pred             cChHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEe--CCCCHhHHHHHHHH
Q 029287          120 CPEEEMVNRVLNRNEGRVDD--NIDTVRKRLQVFKALNLPVINYYARRGKLYTIN--AVGTVDEIFEQVRA  186 (196)
Q Consensus       120 ~~~~~~~~Rl~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~--~~~~~~~v~~~i~~  186 (196)
                      +|...+.+++.+|+......  +...++.--+.|...   ....+++++.++.-|  ..++.+.|.++|+.
T Consensus       226 ~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIEr  293 (393)
T KOG3877|consen  226 TPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDIER  293 (393)
T ss_pred             CCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhhhh
Confidence            99999999999884111111  112222222344433   244556677777655  34566777777654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.33  E-value=3.7e-11  Score=87.43  Aligned_cols=34  Identities=29%  Similarity=0.452  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CCceechhHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELL   44 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~   44 (196)
                      +|+|.|++||||||+++.|+..+   +..+++.++++
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            58999999999999999999887   35566666554

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.33  E-value=4.3e-11  Score=97.74  Aligned_cols=109  Identities=21%  Similarity=0.331  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      |.|+|+|++||||||+++.|++.+|+.+++.|+.+.+.  .+..    +.+... .|...+.....+.+.+....  ...
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~--~g~~----i~~i~~~~Ge~~fr~~E~~~l~~l~~~--~~~   72 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR--EGRS----VRRIFEEDGEEYFRLKEKELLRELVER--DNV   72 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH--cCCC----HHHHHHHhhhHHHHHHHHHHHHHHhhc--CCE
Confidence            36889999999999999999999999999999887663  1111    222221 12222222223333333221  222


Q ss_pred             EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287           89 FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        89 ~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r  132 (196)
                      ++..|  .......+..+.      ...+|||++|++++.+|+..+
T Consensus        73 Vis~Gggvv~~~~~r~~l~------~~~vI~L~as~e~l~~Rl~~~  112 (488)
T PRK13951         73 VVATGGGVVIDPENRELLK------KEKTLFLYAPPEVLMERVTTE  112 (488)
T ss_pred             EEECCCccccChHHHHHHh------cCeEEEEECCHHHHHHHhccC
Confidence            22222  122223333332      245799999999999999765

>PRK07429 phosphoribulokinase; Provisional

Probab=99.33  E-value=3.6e-11  Score=93.39  Aligned_cols=138  Identities=16%  Similarity=0.248  Sum_probs=71.5

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHH------HHHhcC--Ch------hhHHHHHHhhcCCCC
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLR------REIASN--SE------YGTTILNTIKEGKIV   68 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~------~~~~~~--~~------~~~~~~~~l~~~~~~   68 (196)
                      ..++++|+|.|++||||||+++.|++.++   ...+..|++..      +.....  .+      ......+.+..+..+
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I   84 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI   84 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence            45789999999999999999999999886   44566665531      000000  00      000011122222211


Q ss_pred             CHHHHHHH---HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH
Q 029287           69 PSEVTVSL---IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR  145 (196)
Q Consensus        69 ~~~~~~~~---i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~  145 (196)
                      ........   ........+...+|++|...-      +...+....|++|||++|.++..+|..+|...+...+.+.+.
T Consensus        85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l------~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~  158 (327)
T PRK07429         85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPL------YDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVL  158 (327)
T ss_pred             ecceeecCCCCcCCcEecCCCcEEEEechhhc------CcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            10000000   000000112356778885311      111122257999999999999988777764332233445555


Q ss_pred             HHHH
Q 029287          146 KRLQ  149 (196)
Q Consensus       146 ~~~~  149 (196)
                      +++.
T Consensus       159 ~~i~  162 (327)
T PRK07429        159 AEIE  162 (327)
T ss_pred             HHHH
Confidence            4443

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.32  E-value=1.8e-10  Score=84.28  Aligned_cols=165  Identities=15%  Similarity=0.208  Sum_probs=87.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC----h----hhHHHHHHhhcCCCCC-----HH---H
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS----E----YGTTILNTIKEGKIVP-----SE---V   72 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~-----~~---~   72 (196)
                      ..+|+|.||+||||||+++.|++.++..........+. +..+.    +    ....+...+..+....     ..   .
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~-p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRA-PRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccC-CCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence            46889999999999999999998875222221111111 01110    0    1122333332222211     00   0


Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029287           73 TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFK  152 (196)
Q Consensus        73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~  152 (196)
                      ....+...+..  +..+|+|.-+   .....+...+. .+-.+++..++.+.+.+|+..|    ..++.+.+++|+..+.
T Consensus        84 ~~~~i~~~l~~--g~~vi~dl~~---~g~~~l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R----~~~~~~~i~~rl~~~~  153 (205)
T PRK00300         84 PRSPVEEALAA--GKDVLLEIDW---QGARQVKKKMP-DAVSIFILPPSLEELERRLRGR----GTDSEEVIARRLAKAR  153 (205)
T ss_pred             cHHHHHHHHHc--CCeEEEeCCH---HHHHHHHHhCC-CcEEEEEECcCHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Confidence            12334444443  4455666433   22223333332 3333344456778999999988    3456778888877665


Q ss_pred             hchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          153 ALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ....    .+. ....+++ + .+++++.+++.+.+...
T Consensus       154 ~~~~----~~~-~~d~vi~-n-~~~e~~~~~l~~il~~~  185 (205)
T PRK00300        154 EEIA----HAS-EYDYVIV-N-DDLDTALEELKAIIRAE  185 (205)
T ss_pred             HHHH----hHH-hCCEEEE-C-CCHHHHHHHHHHHHHHH
Confidence            4422    222 2234334 3 37999999988877653

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.32  E-value=1.3e-10  Score=83.62  Aligned_cols=111  Identities=18%  Similarity=0.269  Sum_probs=63.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh---C--CceechhHHHHHHHhcCChhh-HHHHHHhhcCCCCCHHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY---G--LTHLSAGELLRREIASNSEYG-TTILNTIKEGKIVPSEVTVSLIQKE   80 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~---~--~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~   80 (196)
                      ..+.+++|.|++||||||+++.|...+   |  ..+++.+. +++.+....... .......        ....... ..
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~~~~~--------~~~~~~~-~~   85 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDRKENI--------RRIGEVA-KL   85 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHHHHHH--------HHHHHHH-HH
Confidence            346899999999999999999999887   2  34455443 333222111000 0000000        0011111 11


Q ss_pred             HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHH
Q 029287           81 MESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR  128 (196)
Q Consensus        81 l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~R  128 (196)
                      + ...+..+|++.......++..+.......+-.++|+++|.+.+.+|
T Consensus        86 ~-~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R  132 (184)
T TIGR00455        86 F-VRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR  132 (184)
T ss_pred             H-HcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence            2 2345677788765555555555544433355679999999999988

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.31  E-value=9.3e-12  Score=90.36  Aligned_cols=165  Identities=18%  Similarity=0.249  Sum_probs=87.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCC----------------------
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV----------------------   68 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------   68 (196)
                      .++|+|++||||||+++.|.   |..-++.|+++........-.+..++++.+.-..+                      
T Consensus        32 ~VaiIG~SGaGKSTLLR~ln---gl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~  108 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLN---GLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG  108 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHh---cccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence            67889999999999999999   66666665553222111111122222222111110                      


Q ss_pred             -----------CHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC
Q 029287           69 -----------PSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE  134 (196)
Q Consensus        69 -----------~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~  134 (196)
                                 +...-.....+.++.   .+....-.+.++.++.|++++++++.+.|.+ |+-|+|...+.-.-.+.  
T Consensus       109 ~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pki-ILADEPvasLDp~~a~~--  185 (258)
T COG3638         109 YTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKI-ILADEPVASLDPESAKK--  185 (258)
T ss_pred             cchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCE-EecCCcccccChhhHHH--
Confidence                       111112222333332   1222233677888999999999999999999 77999984433322221  


Q ss_pred             CCCCCcHHHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          135 GRVDDNIDTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       135 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                        ..+....+.++   .....-|...++..|+++..-+.   |..+++..++-++
T Consensus       186 --Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~  238 (258)
T COG3638         186 --VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE  238 (258)
T ss_pred             --HHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence              00001111110   01233456677888887533332   5566777776544

>PRK07667 uridine kinase; Provisional

Probab=99.31  E-value=1e-11  Score=89.96  Aligned_cols=129  Identities=16%  Similarity=0.225  Sum_probs=71.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHH----hcCChh-------------hHHHHHHhhcC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREI----ASNSEY-------------GTTILNTIKEG   65 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~----~~~~~~-------------~~~~~~~l~~~   65 (196)
                      .+++|+|.|++||||||+++.|++.++     ...++.++++....    ....+.             ...+...+..+
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~   95 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE   95 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            458999999999999999999999873     44677777653221    111100             00111122222


Q ss_pred             CCCC----HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           66 KIVP----SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        66 ~~~~----~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                      ..+.    +..................+|++|....       ...+....|.+|++++|++.+.+|+.+|    ...+.
T Consensus        96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~-------~~~~~~~~d~~v~V~~~~~~~~~R~~~r----~~~~~  164 (193)
T PRK07667         96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQ-------RKEWRDFFHYMVYLDCPRETRFLRESEE----TQKNL  164 (193)
T ss_pred             CeEEEeeeccccccccccceecCCCCEEEEEehhhh-------hhhHHhhceEEEEEECCHHHHHHHHhcc----cHhHH
Confidence            1111    1111111111111222456778876421       1122235799999999999999999987    33344


Q ss_pred             HHHHHH
Q 029287          142 DTVRKR  147 (196)
Q Consensus       142 ~~~~~~  147 (196)
                      +.++++
T Consensus       165 ~~~~~r  170 (193)
T PRK07667        165 SKFKNR  170 (193)
T ss_pred             HHHHHH
Confidence            444443

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.31  E-value=3.1e-12  Score=108.08  Aligned_cols=110  Identities=23%  Similarity=0.327  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChh----hHHHHHHhhcCCCCCH-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEY----GTTILNTIKEGKIVPS-   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~----~~~~~~~l~~~~~~~~-   70 (196)
                      -+++|+|.+||||||+++.|.   |+.....|.+              +|+.+...++.    ...+++++..+.+... 
T Consensus       500 e~vaIvG~SGsGKSTL~KLL~---gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~  576 (709)
T COG2274         500 EKVAIVGRSGSGKSTLLKLLL---GLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATD  576 (709)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCH
Confidence            478999999999999999999   5444433322              45555554443    3446788877666543 


Q ss_pred             HHHHHHH-----HHHHhcC--CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           71 EVTVSLI-----QKEMESS--DSKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        71 ~~~~~~i-----~~~l~~~--~~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      +...+..     .+.+..-  +.+..|-++   ++.+++|++++++++..+|.+ ++||+++.
T Consensus       577 e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I-LlLDEaTS  638 (709)
T COG2274         577 EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI-LLLDEATS  638 (709)
T ss_pred             HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE-EEEeCccc
Confidence            3222211     1111111  123333332   667799999999999999998 77999983

>PLN02348 phosphoribulokinase

Probab=99.30  E-value=2.8e-11  Score=94.95  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=26.6

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ...+++|+|.|++||||||+++.|++.+|
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45679999999999999999999999986

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.29  E-value=4.4e-11  Score=85.72  Aligned_cols=161  Identities=14%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCH--------HHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPS--------EVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~--------~~~   73 (196)
                      .+|+|.||+||||||+++.|++.++..++......+.. ..+..        ....+.+.+..+..+..        ...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~   80 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKP-RPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP   80 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCC-CCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence            47899999999999999999987644333322222211 11100        01123333333322211        111


Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA  153 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~  153 (196)
                      ...+...+..  +..+|+|.-+.+   ...+...+ ..+..++++..+.+.+.+|+..|    ..+..+.+++++..+..
T Consensus        81 ~~~i~~~~~~--g~~vi~d~~~~~---~~~~~~~~-~~~~~i~~~~~~~e~~~~Rl~~r----~~~~~~~i~~rl~~~~~  150 (180)
T TIGR03263        81 KSPVEEALAA--GKDVLLEIDVQG---ARQVKKKF-PDAVSIFILPPSLEELERRLRKR----GTDSEEVIERRLAKAKK  150 (180)
T ss_pred             HHHHHHHHHC--CCeEEEECCHHH---HHHHHHhC-CCcEEEEEECCCHHHHHHHHHHc----CCCCHHHHHHHHHHHHH
Confidence            3345555553  555677743222   22223333 23445455566678999999987    33456677777765543


Q ss_pred             chHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          154 LNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      ..    + +.....+. |+++ +.++..+++.+.+
T Consensus       151 ~~----~-~~~~~d~~-i~n~-~~~~~~~~l~~~~  178 (180)
T TIGR03263       151 EI----A-HADEFDYV-IVND-DLEKAVEELKSII  178 (180)
T ss_pred             HH----h-ccccCcEE-EECC-CHHHHHHHHHHHH
Confidence            21    1 12223333 4444 7889988887765

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.29  E-value=1.3e-10  Score=98.51  Aligned_cols=173  Identities=16%  Similarity=0.180  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH----HhcCC--hhhHHHHHHhhc-------------CCCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE----IASNS--EYGTTILNTIKE-------------GKIVP   69 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~----~~~~~--~~~~~~~~~l~~-------------~~~~~   69 (196)
                      .++|+|.||+||||||+++.|++++|+.+++.|.++|..    +..+-  .....+.+.+..             +..+.
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVT  521 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEch
Confidence            468999999999999999999999999999999998764    11111  111112221111             11111


Q ss_pred             HH-----------------HHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287           70 SE-----------------VTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN  131 (196)
Q Consensus        70 ~~-----------------~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~  131 (196)
                      ..                 .+...+..... .....++|+||=--        ..-+.++.++-|||+++++++.+|..+
T Consensus       522 ~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdi--------gtvv~p~a~~kifl~a~~~~Ra~Rr~~  593 (661)
T PRK11860        522 DAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDM--------GTVIFPDAALKVFLTASAEARAERRYK  593 (661)
T ss_pred             hhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCC--------ccEECCCCCeEEEEECChhHHHHHHHH
Confidence            10                 00111111111 11233566776221        111334678999999999999999886


Q ss_pred             ccCCCC-CCcHHHHHHHHH--HHHhchHhHHHHHHhcCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287          132 RNEGRV-DDNIDTVRKRLQ--VFKALNLPVINYYARRGKLYTINA-VGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       132 r~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~I~~-~~~~~~v~~~i~~~i~~  190 (196)
                      ...... ..+.+.+.+.+.  .+....+... -+.....-++||+ ..+++++.+.|.+.+++
T Consensus       594 ~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~-pl~~~~da~~idts~~~~~~v~~~i~~~i~~  655 (661)
T PRK11860        594 QLISKGISANIADLLADLEARDARDTQRSVA-PLKPAQDALLLDNSDLTIEQAVAQVLDWWQE  655 (661)
T ss_pred             HHHhCCCCCCHHHHHHHHHHHhHHhhcCCCC-CCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence            421111 112322222111  1111111111 0111234566775 56999999999888765

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.29  E-value=1.8e-12  Score=96.29  Aligned_cols=161  Identities=19%  Similarity=0.300  Sum_probs=96.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCChhhHH-----HHHHhhc
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSEYGTT-----ILNTIKE   64 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~-----~~~~l~~   64 (196)
                      .+-+.+|+|+|||||||+.++++   |....+.|.+.                  ++.+.+..+....     .+.++..
T Consensus        23 ~~GvTAlFG~SGsGKTslin~Ia---GL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~Y   99 (352)
T COG4148          23 ARGITALFGPSGSGKTSLINMIA---GLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRY   99 (352)
T ss_pred             CCceEEEecCCCCChhhHHHHHh---ccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhh
Confidence            34689999999999999999999   88777665542                  2222222222222     2333333


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           65 GKIVPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        65 ~~~~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                      |.........+.+-..+..   . -++++||.    +.+|++++.+++...|++ +++|+|...+..-.++.       -
T Consensus       100 G~~~~~~~~fd~iv~lLGI---~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~L-LLmDEPLaSLD~~RK~E-------i  167 (352)
T COG4148         100 GMWKSMRAQFDQLVALLGI---E-HLLDRYPGTLSGGEKQRVAIGRALLTAPEL-LLMDEPLASLDLPRKRE-------I  167 (352)
T ss_pred             hhcccchHhHHHHHHHhCc---H-HHHhhCCCccCcchhhHHHHHHHHhcCCCe-eeecCchhhcccchhhH-------H
Confidence            3322222222333333332   2 24777775    489999999999999999 88999985543321111       1


Q ss_pred             HHHHHHH---H---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          141 IDTVRKR---L---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       141 ~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ..+++..   .   ..|-+|....+...++...++.   |.+.++.+++++.
T Consensus       168 lpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~  219 (352)
T COG4148         168 LPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS  219 (352)
T ss_pred             HHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence            1111111   1   1577777777777777544443   6677888888765

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.29  E-value=4.4e-12  Score=102.80  Aligned_cols=171  Identities=20%  Similarity=0.307  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH----------------hcC-----------ChhhHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI----------------ASN-----------SEYGTTILNTI   62 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~----------------~~~-----------~~~~~~~~~~l   62 (196)
                      -+++|.|.|||||||+++.|+   |+...+.|.+.....                ...           ...+..+.+.+
T Consensus       318 E~lglVGeSGsGKSTlar~i~---gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL  394 (539)
T COG1123         318 ETLGLVGESGSGKSTLARILA---GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL  394 (539)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence            378999999999999999999   666554443322110                000           01122233333


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCC
Q 029287           63 KEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD  138 (196)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~  138 (196)
                      ..............+.+.++..+-..-++++||+    ++.|+.++++++...|.+ |++|+|...+.--....    .-
T Consensus       395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l-li~DEp~SaLDvsvqa~----Vl  469 (539)
T COG1123         395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL-LILDEPVSALDVSVQAQ----VL  469 (539)
T ss_pred             hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE-EEecCCccccCHHHHHH----HH
Confidence            3222222222223344444443332224777775    599999999999999999 77999983222211111    00


Q ss_pred             CcHHHHHHHH---HHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHH
Q 029287          139 DNIDTVRKRL---QVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       139 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i  188 (196)
                      +-...+++++   -.|.+|+.....++|++..++.   |...++.+++++...+.+
T Consensus       470 nLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Y  525 (539)
T COG1123         470 NLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPY  525 (539)
T ss_pred             HHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChH
Confidence            0111111211   2688999999999999766664   666678888887654433

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.28  E-value=1.4e-12  Score=96.86  Aligned_cols=152  Identities=20%  Similarity=0.330  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      -+++|.|.|||||||+++.+.   ++...+.|.++.+...        +..       .......+.+.+.+...+...-
T Consensus        40 e~~glVGESG~GKSTlgr~i~---~L~~pt~G~i~f~g~~--------i~~-------~~~~~~~~~v~elL~~Vgl~~~  101 (268)
T COG4608          40 ETLGLVGESGCGKSTLGRLIL---GLEEPTSGEILFEGKD--------ITK-------LSKEERRERVLELLEKVGLPEE  101 (268)
T ss_pred             CEEEEEecCCCCHHHHHHHHH---cCcCCCCceEEEcCcc--------hhh-------cchhHHHHHHHHHHHHhCCCHH
Confidence            578999999999999999999   7777777776544211        000       0022334455556665444333


Q ss_pred             EEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH---HHHHHhchHhHHHHH
Q 029287           90 LIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR---LQVFKALNLPVINYY  162 (196)
Q Consensus        90 iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  162 (196)
                      .+.+||+    ++.|+..+++++...|++ ++.|+|...+.-=+...    .-.-...+++.   .-.|.+|+...+.++
T Consensus       102 ~~~ryPhelSGGQrQRi~IARALal~P~l-iV~DEpvSaLDvSiqaq----IlnLL~dlq~~~~lt~lFIsHDL~vv~~i  176 (268)
T COG4608         102 FLYRYPHELSGGQRQRIGIARALALNPKL-IVADEPVSALDVSVQAQ----ILNLLKDLQEELGLTYLFISHDLSVVRYI  176 (268)
T ss_pred             HhhcCCcccCchhhhhHHHHHHHhhCCcE-EEecCchhhcchhHHHH----HHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence            4677775    589999999999999999 66888873322222111    00001111111   126788999999999


Q ss_pred             HhcCcEEE---EeCCCCHhHHHHHH
Q 029287          163 ARRGKLYT---INAVGTVDEIFEQV  184 (196)
Q Consensus       163 ~~~~~~~~---I~~~~~~~~v~~~i  184 (196)
                      ++...++.   |...++.++++..-
T Consensus       177 sdri~VMy~G~iVE~g~~~~~~~~p  201 (268)
T COG4608         177 SDRIAVMYLGKIVEIGPTEEVFSNP  201 (268)
T ss_pred             cccEEEEecCceeEecCHHHHhhCC
Confidence            98765554   66667778877653

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.27  E-value=1.6e-11  Score=92.76  Aligned_cols=165  Identities=23%  Similarity=0.317  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-------H-----------HHHHhcCChh-----hHHHHHHhhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-------L-----------RREIASNSEY-----GTTILNTIKEGK   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-------~-----------~~~~~~~~~~-----~~~~~~~l~~~~   66 (196)
                      -+++|.|.|||||||+.+++-   ++.-++.|.+       .           ++.+....+.     ..++.++...|.
T Consensus        55 eIfViMGLSGSGKSTLvR~~N---rLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGL  131 (386)
T COG4175          55 EIFVIMGLSGSGKSTLVRLLN---RLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGL  131 (386)
T ss_pred             eEEEEEecCCCCHHHHHHHHh---ccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcce
Confidence            478899999999999999998   4443333322       1           1112222221     122333333332


Q ss_pred             ---CCCHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC
Q 029287           67 ---IVPSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD  139 (196)
Q Consensus        67 ---~~~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~  139 (196)
                         -++.....+...+.++.....+| -+.||    .+++|++.+++++...||+ +++|+++.-+.-=++..    .++
T Consensus       132 ev~Gv~~~er~~~a~~~l~~VgL~~~-~~~yp~eLSGGMqQRVGLARAla~~~~I-lLMDEaFSALDPLIR~~----mQd  205 (386)
T COG4175         132 EVQGVPKAEREERALEALELVGLEGY-ADKYPNELSGGMQQRVGLARALANDPDI-LLMDEAFSALDPLIRTE----MQD  205 (386)
T ss_pred             eecCCCHHHHHHHHHHHHHHcCchhh-hhcCcccccchHHHHHHHHHHHccCCCE-EEecCchhhcChHHHHH----HHH
Confidence               23455666677777776555555 44444    5699999999999999999 88999994332222211    111


Q ss_pred             cHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          140 NIDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       140 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ..-.++.   +...|.+|+...+..+-++..++.   |...++++|+...
T Consensus       206 eLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~  255 (386)
T COG4175         206 ELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN  255 (386)
T ss_pred             HHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcC
Confidence            1222222   234577787777766666544443   5567788888643

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.27  E-value=2.8e-11  Score=86.74  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLR   45 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~   45 (196)
                      +|+|.|++||||||+++.|++.+ +..+++.|+++.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence            58899999999999999999998 688888887754

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=99.26  E-value=1.1e-10  Score=78.84  Aligned_cols=106  Identities=25%  Similarity=0.375  Sum_probs=53.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC-ChhhHHHHHHhhcCCCCCHHHH---HHHHHHHHh-cCCC
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASN-SEYGTTILNTIKEGKIVPSEVT---VSLIQKEME-SSDS   86 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~---~~~i~~~l~-~~~~   86 (196)
                      |+|.|++||||||+++.|++.++       ..+....... ......-...............   ...+..... ...+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG   73 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence            68899999999999999999972       2222211111 1000000000111122222221   222222221 2345


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEE-EEeecChHHHHHHHhhc
Q 029287           87 KKFLIDGFPRSEENRAAFERIMGAEPDIV-LFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~-i~ld~~~~~~~~Rl~~r  132 (196)
                      ..+|+|+......        ........ |+|+||++++.+|+.+|
T Consensus        74 ~~~iid~~~~~~~--------~~~~~~~~~i~L~~~~e~~~~R~~~R  112 (129)
T PF13238_consen   74 RNIIIDGILSNLE--------LERLFDIKFIFLDCSPEELRKRLKKR  112 (129)
T ss_dssp             SCEEEEESSEEEC--------ETTEEEESSEEEE--HHHHHHHHHCT
T ss_pred             CcEEEecccchhc--------ccccceeeEEEEECCHHHHHHHHHhC
Confidence            6778887652110        00011222 99999999999999998

...

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.26  E-value=2.2e-11  Score=93.67  Aligned_cols=109  Identities=21%  Similarity=0.264  Sum_probs=68.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~   68 (196)
                      -+++|.||+||||||+.++|+   |....+.|.+.             ++.+...++     ...+.++++..-   ...
T Consensus        32 ei~gllG~NGAGKTTllk~l~---gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~  108 (293)
T COG1131          32 EIFGLLGPNGAGKTTLLKILA---GLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL  108 (293)
T ss_pred             eEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC
Confidence            589999999999999999999   77666555432             111111111     112223333221   111


Q ss_pred             ---CHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 ---PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ---~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                         ........+.+.+........-+..|+.+++|++.++.++...|++ ++||+|+
T Consensus       109 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l-liLDEPt  164 (293)
T COG1131         109 SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL-LILDEPT  164 (293)
T ss_pred             ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE-EEECCCC
Confidence               1122333344444443322345788999999999999999999998 8899999

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.4e-11  Score=101.77  Aligned_cols=139  Identities=21%  Similarity=0.317  Sum_probs=82.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSE----YGTTILNTIKEGKIVPSEVTV   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~   74 (196)
                      .+++|.||+||||||++++|.+.|    |-..+|.-+       .+++.+....+    ++..+++++..|......   
T Consensus       495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~---  571 (716)
T KOG0058|consen  495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATD---  571 (716)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCH---
Confidence            489999999999999999999887    333333222       23444443332    455688888887663322   


Q ss_pred             HHHHHHHhcCC-----------CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecCh-------HHHHHHHhhcc
Q 029287           75 SLIQKEMESSD-----------SKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPE-------EEMVNRVLNRN  133 (196)
Q Consensus        75 ~~i~~~l~~~~-----------~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-------~~~~~Rl~~r~  133 (196)
                      +.+..+.+...           .+..+-+.   ++.+++||+++++++..+|.+ ++||+-+       |...+....+ 
T Consensus       572 e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~V-LILDEATSALDaeSE~lVq~aL~~-  649 (716)
T KOG0058|consen  572 EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRV-LILDEATSALDAESEYLVQEALDR-  649 (716)
T ss_pred             HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCE-EEEechhhhcchhhHHHHHHHHHH-
Confidence            22222222111           22222222   556799999999999999998 6688765       3333333332 


Q ss_pred             CCCCCCcHHHHHHHHHHHHhc
Q 029287          134 EGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~  154 (196)
                       ...+.+.-.+.||+...+..
T Consensus       650 -~~~~rTVlvIAHRLSTV~~A  669 (716)
T KOG0058|consen  650 -LMQGRTVLVIAHRLSTVRHA  669 (716)
T ss_pred             -hhcCCeEEEEehhhhHhhhc
Confidence             11123555566666655544

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.25  E-value=1.5e-10  Score=80.21  Aligned_cols=112  Identities=20%  Similarity=0.296  Sum_probs=62.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh---C--CceechhHHHHHHHhcCChhhHHHH-HHhhcCCCCCHHHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY---G--LTHLSAGELLRREIASNSEYGTTIL-NTIKEGKIVPSEVTVSLIQKEM   81 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~---~--~~~i~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~i~~~l   81 (196)
                      ++++|-|+|.+||||||+++.|.+++   |  ...++. +.+++.+..+......-+ +.+         .....+...+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~---------rr~~~~A~ll   70 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENI---------RRIAEVAKLL   70 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHH---------HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHH---------HHHHHHHHHH
Confidence            36889999999999999999999998   3  445565 344443333221111111 010         0112222222


Q ss_pred             hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHh
Q 029287           82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL  130 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~  130 (196)
                      . ..+..+|+.........+......+....-+-||++||.+++.+|=.
T Consensus        71 ~-~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~  118 (156)
T PF01583_consen   71 A-DQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDP  118 (156)
T ss_dssp             H-HTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTT
T ss_pred             H-hCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCc
Confidence            2 24566777776666666665555554334567999999999999854

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.25  E-value=3.1e-11  Score=90.90  Aligned_cols=161  Identities=21%  Similarity=0.289  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCChhh-----HHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSEYG-----TTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~~~-----~~~~~~l~~~--   65 (196)
                      =+++|+|.||+||||+.+++-   ++...+.|.+                 .|+.+....++.     .+..+++...  
T Consensus        33 eI~GIIG~SGAGKSTLiR~iN---~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLe  109 (339)
T COG1135          33 EIFGIIGYSGAGKSTLLRLIN---LLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE  109 (339)
T ss_pred             cEEEEEcCCCCcHHHHHHHHh---ccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHh
Confidence            488999999999999999887   6555544433                 233333333321     1222222221  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecCh--------HHHHHHHhhc
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPE--------EEMVNRVLNR  132 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~--------~~~~~Rl~~r  132 (196)
                       ...+.....+.+.+.++..+-..+ .+.||.    +++|++.+++++...|++ ++.|+++        +.+.+.+.+-
T Consensus       110 iag~~k~ei~~RV~elLelVgL~dk-~~~yP~qLSGGQKQRVaIARALa~~P~i-LL~DEaTSALDP~TT~sIL~LL~~I  187 (339)
T COG1135         110 LAGVPKAEIKQRVAELLELVGLSDK-ADRYPAQLSGGQKQRVAIARALANNPKI-LLCDEATSALDPETTQSILELLKDI  187 (339)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhh-hccCchhcCcchhhHHHHHHHHhcCCCE-EEecCccccCChHHHHHHHHHHHHH
Confidence             113455566667777776555555 667774    699999999999999999 7799877        3333333322


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHH
Q 029287          133 NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQV  184 (196)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i  184 (196)
                      .+   +.....      ...+|....+..+|++..++.   |...+++.+++..-
T Consensus       188 n~---~lglTI------vlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P  233 (339)
T COG1135         188 NR---ELGLTI------VLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP  233 (339)
T ss_pred             HH---HcCCEE------EEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence            10   001111      445677777888888776664   66677888887554

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.24  E-value=3.8e-10  Score=93.82  Aligned_cols=165  Identities=14%  Similarity=0.094  Sum_probs=86.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCC------ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL------THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKE   80 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~   80 (196)
                      +.+.+|+|+|++||||||+++.|++.++.      .+++.| .+++.+.........-++...       ..........
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~~~~-------~~l~~~a~~v  461 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRDLNI-------LRIGFVASEI  461 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHHHHH-------HHHHHHHHHH
Confidence            44578999999999999999999999985      677765 445544322111100000000       0001111112


Q ss_pred             HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287           81 MESSDSKKFLIDGFPRSEENRAAFERIMGAEPD-IVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVI  159 (196)
Q Consensus        81 l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~-~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (196)
                      +.  .+.++|++........+..+...+..... ++|||++|++++.+|..+...  .....+.++.   .|... .   
T Consensus       462 ~~--~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll--~~~~~~~i~~---l~~~R-~---  530 (568)
T PRK05537        462 TK--NGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLY--AKAREGKIKG---FTGIS-D---  530 (568)
T ss_pred             Hh--CCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcccccc--ccchhchhhc---ccccc-c---
Confidence            22  35667777654444334444433322222 479999999999999743210  0001111111   11111 1   


Q ss_pred             HHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287          160 NYYARRGKLYTINAV-GTVDEIFEQVRAVFAA  190 (196)
Q Consensus       160 ~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~  190 (196)
                      .+|.....-++||++ .+++++.++|...+..
T Consensus       531 ~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        531 PYEPPANPELVIDTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             cccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            122212223567765 5899999888777654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.23  E-value=6.2e-12  Score=91.27  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      +|+|.|++||||||+++.|+..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999996

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.22  E-value=4.5e-10  Score=80.16  Aligned_cols=109  Identities=14%  Similarity=0.209  Sum_probs=58.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES   83 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~   83 (196)
                      +.+|+|.|++||||||+++.|++.+.     +.+++.+.+ ++.+.........-++        ........+...+. 
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~--------~~~~~~~~~a~~~~-   73 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRD--------TNIRRIGFVANLLT-   73 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHH--------HHHHHHHHHHHHHH-
Confidence            45899999999999999999998872     455666544 3332211100000000        00000111222222 


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH
Q 029287           84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV  129 (196)
Q Consensus        84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl  129 (196)
                      ..+..++++........+..+... ...+ .++||++|++++.+|.
T Consensus        74 ~~g~~vi~~~~~~~~~~~~~l~~~-~~~~-~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         74 RHGVIVLVSAISPYRETREEVRAN-IGNF-LEVFVDAPLEVCEQRD  117 (175)
T ss_pred             hCCCEEEEecCCCCHHHHHHHHhh-cCCe-EEEEEcCCHHHHHHhC
Confidence            234456677653333333333332 2233 4699999999999995

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.22  E-value=5.9e-11  Score=85.08  Aligned_cols=114  Identities=17%  Similarity=0.316  Sum_probs=69.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCc---------eechhHH---------HHHHHhcC----ChhhHHHHHHhhcC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLT---------HLSAGEL---------LRREIASN----SEYGTTILNTIKEG   65 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~---------~i~~~~~---------~~~~~~~~----~~~~~~~~~~l~~~   65 (196)
                      ...+.+++|||||||||+++.|-+-....         .++..++         +|+.+...    +++...+.+++..|
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG  111 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG  111 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHh
Confidence            34689999999999999999998654211         1111111         34443322    23445566666555


Q ss_pred             CCCC---HHHHHHHHHHHHhcCCCCcEE-------EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 KIVP---SEVTVSLIQKEMESSDSKKFL-------IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 ~~~~---~~~~~~~i~~~l~~~~~~~~i-------id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..+.   +....+.++..+..+.-=.-|       .-+++.+++|++.+++++...|++ +++|+|.
T Consensus       112 ~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeV-lLmDEPt  177 (253)
T COG1117         112 LRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEV-LLMDEPT  177 (253)
T ss_pred             HHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcE-EEecCcc
Confidence            3322   233334444444422100001       223667899999999999999998 8899998

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=9.7e-12  Score=97.79  Aligned_cols=166  Identities=19%  Similarity=0.312  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+..            +.+....+     ...++.+++..+.   ...
T Consensus        33 e~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~  109 (351)
T PRK11432         33 TMVTLLGPSGCGKTTVLRLVA---GLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP  109 (351)
T ss_pred             CEEEEECCCCCcHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC
Confidence            478999999999999999999   877666654421            11111111     0112333333221   122


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .....+.+.+.+...+-..+   -...++.++.|++++++++...|++ ++||+|+..+....+..-    ......+.+
T Consensus       110 ~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l-LLLDEP~s~LD~~~r~~l----~~~l~~l~~  184 (351)
T PRK11432        110 KEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV-LLFDEPLSNLDANLRRSM----REKIRELQQ  184 (351)
T ss_pred             HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCCcccCCHHHHHHH----HHHHHHHHH
Confidence            22233344444443222222   1233555699999999999999999 779999944333333220    000111111


Q ss_pred             ---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 ---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                         ....|.+|+...+..++++..++.   |...++++++++.
T Consensus       185 ~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~  227 (351)
T PRK11432        185 QFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ  227 (351)
T ss_pred             hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence               123566677777777777544442   4456788887654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.20  E-value=1.7e-10  Score=87.59  Aligned_cols=168  Identities=18%  Similarity=0.256  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC--ceechhHHH----------HH---H----------------HhcCChhhHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELL----------RR---E----------------IASNSEYGTTI   58 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~~~~~----------~~---~----------------~~~~~~~~~~~   58 (196)
                      -+++|+|-|||||||+++.+..-+.-  ..+..|++.          .+   .                +.+....+.++
T Consensus        32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi  111 (316)
T COG0444          32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI  111 (316)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHH
Confidence            48999999999999999999966531  123333221          00   1                11222356667


Q ss_pred             HHHhhcCCCC-CHHHHHHHHHHHHhcCCC--CcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287           59 LNTIKEGKIV-PSEVTVSLIQKEMESSDS--KKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN  131 (196)
Q Consensus        59 ~~~l~~~~~~-~~~~~~~~i~~~l~~~~~--~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~  131 (196)
                      .+.+..+... ......+...+.++...-  ..-+++.||+    ++.||+.++.++...|++ ++-|+|+.-+.--...
T Consensus       112 ~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L-lIADEPTTALDvt~Qa  190 (316)
T COG0444         112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL-LIADEPTTALDVTVQA  190 (316)
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE-EEeCCCcchhhHHHHH
Confidence            7777643322 233334444555554322  1225777776    599999999999999999 7799999333222211


Q ss_pred             ccCCCCCCcHHHHHHH------HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHH
Q 029287          132 RNEGRVDDNIDTVRKR------LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVR  185 (196)
Q Consensus       132 r~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~  185 (196)
                      +       -.+.+++.      .-.+.+|+...+..++++..|+.   |...++.+++++.-.
T Consensus       191 q-------Il~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~  246 (316)
T COG0444         191 Q-------ILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPK  246 (316)
T ss_pred             H-------HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCC
Confidence            1       01111111      12578899999999999766665   777888888877643

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.19  E-value=1.3e-11  Score=97.39  Aligned_cols=166  Identities=17%  Similarity=0.271  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcCCC---CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEGKI---VP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~~~---~~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+...            .+....+     ...++.+++..+..   ..
T Consensus        31 e~~~llG~sGsGKSTLLr~ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~  107 (356)
T PRK11650         31 EFIVLVGPSGCGKSTLLRMVA---GLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP  107 (356)
T ss_pred             CEEEEECCCCCcHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC
Confidence            478999999999999999999   8776665544211            1111111     01123344432211   22


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .......+.+.+...+-..+   -...++.++.|++++++++...|++ ++||+|+..+.......-    ......+.+
T Consensus       108 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l-lLLDEP~s~LD~~~r~~l----~~~l~~l~~  182 (356)
T PRK11650        108 KAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV-FLFDEPLSNLDAKLRVQM----RLEIQRLHR  182 (356)
T ss_pred             HHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHHH----HHHHHHHHH
Confidence            22222333444443222221   1334566799999999999999999 789999943333222210    000111111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .   ...|.+|+...+..++++..++.   +...++++++++.
T Consensus       183 ~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~  225 (356)
T PRK11650        183 RLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK  225 (356)
T ss_pred             hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence            1   13566677766767776543432   4445678887654

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.19  E-value=1.1e-10  Score=85.82  Aligned_cols=109  Identities=16%  Similarity=0.079  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-HHH----Hh--cCChhhHHHHHHhhcC---CCCCHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-RRE----IA--SNSEYGTTILNTIKEG---KIVPSEVTVSLIQK   79 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-~~~----~~--~~~~~~~~~~~~l~~~---~~~~~~~~~~~i~~   79 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+. ...    ..  ..........+++...   ...........+..
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~---Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~   90 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLC---GLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQ   90 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            588999999999999999999   77666666542 110    00  0000111222222210   11122222222222


Q ss_pred             HHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           80 EMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..........-+..++.++.++..++.++...|++ +++|+|+
T Consensus        91 ~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~l-lllDEP~  132 (213)
T PRK15177         91 LTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRL-YIADGKL  132 (213)
T ss_pred             HhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCE-EEECCCC
Confidence            22211111122456778899999999999999998 7799996

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.19  E-value=1.4e-11  Score=97.68  Aligned_cols=167  Identities=17%  Similarity=0.281  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCCC---CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGKI---VP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~~---~~   69 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+..            +.+....+     ....+.+++..+..   .+
T Consensus        41 e~~~LlGpsGsGKSTLLr~Ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~  117 (375)
T PRK09452         41 EFLTLLGPSGCGKTTVLRLIA---GFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP  117 (375)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC
Confidence            378999999999999999999   776665554321            11111111     01123344332211   12


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .......+.+.++..+-..+   -...++.++.|++++++++...|++ ++||+|+..+....+..    .......+.+
T Consensus       118 ~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l-lLLDEP~s~LD~~~r~~----l~~~L~~l~~  192 (375)
T PRK09452        118 AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV-LLLDESLSALDYKLRKQ----MQNELKALQR  192 (375)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCcCCHHHHHH----HHHHHHHHHH
Confidence            22222333344443222221   1234556799999999999999998 88999994333333222    0001111111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQV  184 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i  184 (196)
                      .   ...|.+|+...+..++++..++.   |...++++++++.-
T Consensus       193 ~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p  236 (375)
T PRK09452        193 KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP  236 (375)
T ss_pred             hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            1   12567777777777776544432   44556788877653

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.18  E-value=3.3e-11  Score=95.04  Aligned_cols=166  Identities=17%  Similarity=0.223  Sum_probs=84.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------------HHHhcCChh-----hHHHHHHhhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------------REIASNSEY-----GTTILNTIKEGK   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------------~~~~~~~~~-----~~~~~~~l~~~~   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+..                  +.+....+.     ...+.+++..+.
T Consensus        25 e~~~l~G~nGsGKSTLl~~ia---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~  101 (352)
T PRK11144         25 GITAIFGRSGAGKTSLINAIS---GLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGM  101 (352)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhh
Confidence            478999999999999999999   765544443311                  001111110     112333333221


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           67 IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      ..........+.+.+........-...++.++.|++.+++++...|++ ++||+|+.-+.......    ..+....+.+
T Consensus       102 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l-lLLDEPts~LD~~~~~~----l~~~L~~l~~  176 (352)
T PRK11144        102 AKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL-LLMDEPLASLDLPRKRE----LLPYLERLAR  176 (352)
T ss_pred             hhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEcCCcccCCHHHHHH----HHHHHHHHHH
Confidence            111111112222222221111112345667799999999999999998 77999993322221111    0000111111


Q ss_pred             ---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 ---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                         ....+.+|+...+..++++..++.   +...+++++++..
T Consensus       177 ~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~  219 (352)
T PRK11144        177 EINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS  219 (352)
T ss_pred             hcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence               112456677666666666433332   3445677777654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.18  E-value=1.5e-10  Score=91.26  Aligned_cols=166  Identities=20%  Similarity=0.279  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSEY-----GTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~~-----~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.||+||||||++++|+   |....+.|.+..            +.+....+.     ..++.+++..+.   ...
T Consensus        31 e~~~l~GpsGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~  107 (353)
T TIGR03265        31 EFVCLLGPSGCGKTTLLRIIA---GLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG  107 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC
Confidence            478999999999999999999   876665554321            111111110     112333333221   112


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .......+.+.++..+-..+   -...++.++.|++++++++...|++ ++||+|...+....+..-    ......+.+
T Consensus       108 ~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l-lLLDEP~s~LD~~~r~~l----~~~L~~l~~  182 (353)
T TIGR03265       108 RAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL-LLLDEPLSALDARVREHL----RTEIRQLQR  182 (353)
T ss_pred             HHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccCCHHHHHHH----HHHHHHHHH
Confidence            22222333444443222222   1233556799999999999999999 779999944433332220    001111111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      +   ...|.+|+...+..++++..++.   |...++++++++.
T Consensus       183 ~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~  225 (353)
T TIGR03265       183 RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH  225 (353)
T ss_pred             hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            1   12567777777777776443332   4456778888764

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.17  E-value=1.2e-11  Score=87.50  Aligned_cols=112  Identities=15%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC----Cceechh--------HHHHHHHhcC-----ChhhHHHHHHhhcCCCC---
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG----LTHLSAG--------ELLRREIASN-----SEYGTTILNTIKEGKIV---   68 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~----~~~i~~~--------~~~~~~~~~~-----~~~~~~~~~~l~~~~~~---   68 (196)
                      ..+..|+||+|+||||++++.++-.+    -..++.-        ++.++ ++..     .....++++....|+.=   
T Consensus        27 g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~-lSILkQ~N~i~~rlTV~dLv~FGRfPYSq  105 (252)
T COG4604          27 GGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK-LSILKQENHINSRLTVRDLVGFGRFPYSQ  105 (252)
T ss_pred             CceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH-HHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence            36889999999999999999886552    2222211        11111 1111     11222355666555321   


Q ss_pred             -----CHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 -----PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 -----~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                           ++........+++...+-..-.+|.++.++.|+..++.-+++..|+ |+||+|.
T Consensus       106 GRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy-vlLDEPL  163 (252)
T COG4604         106 GRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY-VLLDEPL  163 (252)
T ss_pred             CCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE-EEecCcc
Confidence                 1233334444455554444445888999999999999889999999 8899998

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.17  E-value=3e-09  Score=81.26  Aligned_cols=149  Identities=15%  Similarity=0.161  Sum_probs=73.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--C
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS--D   85 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~--~   85 (196)
                      .+.+|+|+|++||||||+++.|.+ .|+..++.-..                           . ....+.+.....  .
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d~~~~---------------------------~-L~~~l~~~~~~~~~~   55 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALED-LGYYCVDNLPP---------------------------S-LLPKLVELLAQSGGI   55 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHH-cCCeEECCcCH---------------------------H-HHHHHHHHHHhcCCC
Confidence            346899999999999999999974 47766543110                           0 011111111211  1


Q ss_pred             C-CcEEEeCCCCCH-HHH-HHHHHHhC-CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHH
Q 029287           86 S-KKFLIDGFPRSE-ENR-AAFERIMG-AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINY  161 (196)
Q Consensus        86 ~-~~~iid~~~~~~-~~~-~~~~~~~~-~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (196)
                      . -.+++|--.... ... ..+..... ...-.+|||++|++++.+|+..++..|+........+.  .+... ..... 
T Consensus        56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~--I~~eR-~~l~p-  131 (288)
T PRK05416         56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEG--IELER-ELLAP-  131 (288)
T ss_pred             CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHH--HHHHH-hhhhh-
Confidence            2 233455322211 111 12222111 12334599999999999999754323332110111111  11111 11111 


Q ss_pred             HHhcCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287          162 YARRGKLYTINA-VGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       162 ~~~~~~~~~I~~-~~~~~~v~~~i~~~i~~  190 (196)
                      +.+.+. ++||+ +.+++++.++|.+.+..
T Consensus       132 l~~~AD-ivIDTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        132 LRERAD-LVIDTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             HHHhCC-EEEECCCCCHHHHHHHHHHHHhc
Confidence            112223 45665 45899999998887643

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.17  E-value=7.8e-11  Score=91.27  Aligned_cols=161  Identities=18%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhc-C--CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKE-G--KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~-~--~~~   68 (196)
                      -+++|.||+||||||+.++|+   |....+.|.+.             ++.+...++     ...+..+++.. +  ...
T Consensus        34 ei~gllGpNGaGKSTLl~~l~---Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~  110 (306)
T PRK13537         34 ECFGLLGPNGAGKTTTLRMLL---GLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL  110 (306)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCC
Confidence            488999999999999999999   76555544321             111111111     11223333321 1  011


Q ss_pred             CHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH-------HHHHhhccCCCCC
Q 029287           69 PSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM-------VNRVLNRNEGRVD  138 (196)
Q Consensus        69 ~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~-------~~Rl~~r~~~~~~  138 (196)
                      ........+.+.++   ......--+..++.++.|++.++.++...|++ ++||+|+.-+       ..++.++..   .
T Consensus       111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l-llLDEPt~gLD~~~~~~l~~~l~~l~---~  186 (306)
T PRK13537        111 SAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV-LVLDEPTTGLDPQARHLMWERLRSLL---A  186 (306)
T ss_pred             CHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE-EEEeCCCcCCCHHHHHHHHHHHHHHH---h
Confidence            11211222233333   22211122567888999999999999999999 8899999211       111111100   0


Q ss_pred             CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          139 DNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ...      ...+.+|....++.+|++..++.   +...++++++.+.
T Consensus       187 ~g~------till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        187 RGK------TILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             CCC------EEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            011      12455677776777776443332   3345666666543

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.16  E-value=6.3e-11  Score=103.31  Aligned_cols=112  Identities=23%  Similarity=0.348  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcC-CCCCHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEG-KIVPSEVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~   73 (196)
                      .-++|.||+||||||+..+|.+.|    |...+|..++       +|+.+....+    +..++++++..| ..++...+
T Consensus      1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eI 1096 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEI 1096 (1228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHH
Confidence            578999999999999999999988    5556654443       5666554443    466689999888 22344433


Q ss_pred             HHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           74 VSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        74 ~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+...     +.+.. ++ .+..+-+   .++.+++||.++++++..+|.+ ++||+-+
T Consensus      1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI-LLLDEAT 1154 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI-LLLDEAT 1154 (1228)
T ss_pred             HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe-eeeeccc
Confidence            33222     11111 11 2333332   2667799999999999999998 7799866

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.16  E-value=3.4e-11  Score=95.59  Aligned_cols=166  Identities=20%  Similarity=0.284  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+..            +.+....+     ....+.+++..+.   ...
T Consensus        46 e~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~  122 (377)
T PRK11607         46 EIFALLGASGCGKSTLLRMLA---GFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP  122 (377)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC
Confidence            478999999999999999999   877665554321            11111111     0112333333221   122


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .....+.+.+.++...-..+   -...++.++.|++++++++...|++ ++||+|+..+....+..-    ......+.+
T Consensus       123 ~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l-LLLDEP~s~LD~~~r~~l----~~~l~~l~~  197 (377)
T PRK11607        123 KAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL-LLLDEPMGALDKKLRDRM----QLEVVDILE  197 (377)
T ss_pred             HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHHH----HHHHHHHHH
Confidence            22223334444443222222   1234556799999999999999999 889999944333322210    000001111


Q ss_pred             ---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 ---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                         ....|.+|+...+..++++..++.   |...+++++++..
T Consensus       198 ~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~  240 (377)
T PRK11607        198 RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH  240 (377)
T ss_pred             hcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence               112566777777777777543332   4455778887754

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.16  E-value=1.5e-09  Score=93.67  Aligned_cols=38  Identities=29%  Similarity=0.470  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE   47 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~   47 (196)
                      ++|+|.||+||||||+++.|++++|+.+++.|.++|..
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            58999999999999999999999999999999998764

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.15  E-value=2.1e-09  Score=74.73  Aligned_cols=108  Identities=19%  Similarity=0.265  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CC--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHH---HHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY---GL--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSL---IQKEME   82 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~---~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---i~~~l~   82 (196)
                      +++|.|+|||||||+++.|++.+   |.  ..++. +-+++.+.......           ..........   ....+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~-----------~~~~~~~~~~~~~~a~~l~   68 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFS-----------REDREENIRRIAEVAKLLA   68 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCC-----------cchHHHHHHHHHHHHHHHH
Confidence            46789999999999999999998   53  33444 33443322111000           0000011111   111221


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhh
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN  131 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~  131 (196)
                       ..+..+|+|........+..+.......+-.+++|++|.+++.+|-.+
T Consensus        69 -~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          69 -DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             -hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence             235667788655555556555544433556679999999999998654

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.15  E-value=3.4e-11  Score=94.85  Aligned_cols=166  Identities=21%  Similarity=0.300  Sum_probs=89.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCCC-----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGKI-----   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~~-----   67 (196)
                      -+++|.||+||||||++++|+   |....+.|.+..            +.+....+     ....+.+++..+..     
T Consensus        29 e~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~  105 (353)
T PRK10851         29 QMVALLGPSGSGKTTLLRIIA---GLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRR  105 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccc
Confidence            488999999999999999999   766555544321            11111111     11223444433211     


Q ss_pred             --CCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           68 --VPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        68 --~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                        .........+.+.++...-..+   -...++.++.|++++++++...|++ ++||+|+..+.......    ..+...
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l-lLLDEP~s~LD~~~r~~----l~~~L~  180 (353)
T PRK10851        106 ERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI-LLLDEPFGALDAQVRKE----LRRWLR  180 (353)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCccCCHHHHHH----HHHHHH
Confidence              1222222333344443222221   1334666799999999999999998 78999993332222221    000111


Q ss_pred             HHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          143 TVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       143 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .+.++   ...+.+|+...+..++++..++.   |...++++++++.
T Consensus       181 ~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~  227 (353)
T PRK10851        181 QLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE  227 (353)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            11111   12566777777777777543332   4445677877654

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.15  E-value=2.6e-10  Score=89.02  Aligned_cols=166  Identities=20%  Similarity=0.230  Sum_probs=85.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----------hhHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----------YGTTILNT   61 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----------~~~~~~~~   61 (196)
                      -+++|+|++||||||+++.|+   |+...+.|.+.                 ++.+....+           .+..+...
T Consensus        42 e~~~IvG~sGsGKSTLl~~l~---gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~  118 (327)
T PRK11308         42 KTLAVVGESGCGKSTLARLLT---MIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEP  118 (327)
T ss_pred             CEEEEECCCCCcHHHHHHHHH---cCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHH
Confidence            488999999999999999999   55433333221                 111111111           11112221


Q ss_pred             hhcCCCCCHHHHHHHHHHHHhcCCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC
Q 029287           62 IKEGKIVPSEVTVSLIQKEMESSDSKKFLIDG----FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV  137 (196)
Q Consensus        62 l~~~~~~~~~~~~~~i~~~l~~~~~~~~iid~----~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~  137 (196)
                      +..............+.+.+...+-..-..+.    ++.++.|++.++.++...|++ +++|+|+.-+..-....    .
T Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~l-LilDEPts~LD~~~~~~----i  193 (327)
T PRK11308        119 LLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDV-VVADEPVSALDVSVQAQ----V  193 (327)
T ss_pred             HHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCE-EEEECCCccCCHHHHHH----H
Confidence            11111122222223334444432221111333    455699999999999999998 77999992221111110    0


Q ss_pred             CCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          138 DDNIDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       138 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .+-...+.+   ....+.+|+...+..+++...++.   |...++.+++++.
T Consensus       194 ~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~  245 (327)
T PRK11308        194 LNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN  245 (327)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            000000111   012567787777777777554443   5556777777654

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.15  E-value=7e-11  Score=93.29  Aligned_cols=167  Identities=16%  Similarity=0.243  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceech--hHHHH------------HHHhcCCh-----hhHHHHHHhhcC---CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA--GELLR------------REIASNSE-----YGTTILNTIKEG---KI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~--~~~~~------------~~~~~~~~-----~~~~~~~~l~~~---~~   67 (196)
                      -+++|.||+||||||++++|+   |+...+.  |.+..            +.+....+     ...++.+++..+   ..
T Consensus        32 e~~~llGpsGsGKSTLLr~ia---Gl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~  108 (362)
T TIGR03258        32 ELLALIGKSGCGKTTLLRAIA---GFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK  108 (362)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC
Confidence            478999999999999999999   8777666  54421            11111111     011233333321   11


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHH
Q 029287           68 VPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTV  144 (196)
Q Consensus        68 ~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~  144 (196)
                      .+.......+.+.++..+-..+   -...++.++.|++++++++...|++ ++||+|...+.......    .......+
T Consensus       109 ~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l-lLLDEP~s~LD~~~r~~----l~~~l~~l  183 (362)
T TIGR03258       109 MPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV-LLLDEPLSALDANIRAN----MREEIAAL  183 (362)
T ss_pred             CCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCccccCCHHHHHH----HHHHHHHH
Confidence            2222223334444443222222   1334666799999999999999999 78999994433332221    00011111


Q ss_pred             HHH----HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHH
Q 029287          145 RKR----LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQV  184 (196)
Q Consensus       145 ~~~----~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i  184 (196)
                      .++    ...|.+|+...+..++++..++.   +...++++++++..
T Consensus       184 ~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p  230 (362)
T TIGR03258       184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP  230 (362)
T ss_pred             HHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            111    12567777777777776544432   44567888887653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.15  E-value=9e-11  Score=85.84  Aligned_cols=34  Identities=21%  Similarity=0.397  Sum_probs=28.1

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHH
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV  126 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~  126 (196)
                      ..++.+++||+++++++...|.+ |+.|+|+..+.
T Consensus       141 ~eLSGGqqQRVAIARAL~~~P~i-ilADEPTgnLD  174 (226)
T COG1136         141 SELSGGQQQRVAIARALINNPKI-ILADEPTGNLD  174 (226)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCCe-EEeeCccccCC
Confidence            34556799999999999999999 88999995543

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.15  E-value=6.8e-11  Score=89.71  Aligned_cols=172  Identities=17%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH------hcCChhhHHHHHHhhcC---CCCCHHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI------ASNSEYGTTILNTIKEG---KIVPSEVTVSLIQKE   80 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~l~~~---~~~~~~~~~~~i~~~   80 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.....      .........+.+++..+   ...........+...
T Consensus        51 e~~~liG~NGsGKSTLlk~L~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~  127 (264)
T PRK13546         51 DVIGLVGINGSGKSTLSNIIG---GSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKI  127 (264)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            478999999999999999999   766555543321110      00000111233333211   011222222222223


Q ss_pred             HhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH-----HHHHHH
Q 029287           81 MESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK-----RLQVFK  152 (196)
Q Consensus        81 l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~-----~~~~~~  152 (196)
                      +.......+   -+..++.++.+++.++.++...|++ ++||+|+.-+.....+.       -.+.+.+     ....+.
T Consensus       128 l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~i-LlLDEPt~gLD~~~~~~-------l~~~L~~~~~~g~tiIii  199 (264)
T PRK13546        128 IEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDI-LVIDEALSVGDQTFAQK-------CLDKIYEFKEQNKTIFFV  199 (264)
T ss_pred             HHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCE-EEEeCccccCCHHHHHH-------HHHHHHHHHHCCCEEEEE
Confidence            322111111   2445777899999999999999998 77999993322111110       0001110     011344


Q ss_pred             hchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHhhh
Q 029287          153 ALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +|....+..+++...++.   +...++.+++.+.+...++.+.
T Consensus       200 sH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  242 (264)
T PRK13546        200 SHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFK  242 (264)
T ss_pred             cCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHHH
Confidence            455555555555433321   3445678888877766665544

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.14  E-value=1.6e-10  Score=89.44  Aligned_cols=109  Identities=19%  Similarity=0.236  Sum_probs=62.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~   68 (196)
                      -+++|.||+||||||++++|+   |+...+.|++.             ++.+...++     ...+..+++...   ...
T Consensus        20 e~~~l~G~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~   96 (302)
T TIGR01188        20 EVFGFLGPNGAGKTTTIRMLT---TLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGL   96 (302)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCC
Confidence            488999999999999999999   76554444321             111211111     111233333211   011


Q ss_pred             CHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 PSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ........+.+.+..   .....--+..++.++.|++.++.++...|++ ++||+|+
T Consensus        97 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt  152 (302)
T TIGR01188        97 PKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV-LFLDEPT  152 (302)
T ss_pred             CHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            111111222333332   2111122456888899999999999999999 7899999

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.14  E-value=5.7e-12  Score=91.95  Aligned_cols=161  Identities=20%  Similarity=0.296  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChh-----hHHHHHHhhcC----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEY-----GTTILNTIKEG----   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~-----~~~~~~~l~~~----   65 (196)
                      -+++|+||+||||||+-+.++   |+...+.|.+.               +..+.-..+.     .-+.-+++.-+    
T Consensus        31 ei~~LIGPNGAGKTTlfNlit---G~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~  107 (250)
T COG0411          31 EIVGLIGPNGAGKTTLFNLIT---GFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHAR  107 (250)
T ss_pred             eEEEEECCCCCCceeeeeeec---ccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhh
Confidence            589999999999999999999   66665555442               1111111110     00011111110    


Q ss_pred             ----------CC-CCHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh--------H
Q 029287           66 ----------KI-VPSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE--------E  123 (196)
Q Consensus        66 ----------~~-~~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~--------~  123 (196)
                                .. -......+.....++   ......-....++.++..++.+++++...|.+ ++||+|.        +
T Consensus       108 ~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~l-LLLDEPaAGln~~e~~  186 (250)
T COG0411         108 LGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKL-LLLDEPAAGLNPEETE  186 (250)
T ss_pred             hhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCE-EEecCccCCCCHHHHH
Confidence                      00 012222333333333   22222334556777888899999999999999 8899998        3


Q ss_pred             HHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          124 EMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       124 ~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .+.+++.+-+   .......      ...+|+......+|++..|+.   +-+++++++|.+.
T Consensus       187 ~l~~~i~~i~---~~~g~ti------llIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d  240 (250)
T COG0411         187 ELAELIRELR---DRGGVTI------LLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN  240 (250)
T ss_pred             HHHHHHHHHH---hcCCcEE------EEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence            3333333221   0011122      457788888888888655543   5688999999865

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.14  E-value=1.8e-09  Score=91.46  Aligned_cols=159  Identities=17%  Similarity=0.227  Sum_probs=86.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh-----CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH---HHH--
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY-----GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT---VSL--   76 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~--   76 (196)
                      ..+++|+++|.|||||||+++.|++++     +..+++.|+ +++.+...              ....+...   ...  
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~--------------~~~~~~~r~~~~~~l~  522 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRD--------------LGFSDADRVENIRRVA  522 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCC--------------CCCCHHHHHHHHHHHH
Confidence            357899999999999999999999997     245666644 44433211              11111111   111  


Q ss_pred             -HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhch
Q 029287           77 -IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALN  155 (196)
Q Consensus        77 -i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~  155 (196)
                       +...+ ...+..+|++........+..+.......+-.++||++|.+.+.+|. .|+. ....+.+.+.    .+....
T Consensus       523 ~~a~~~-~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r~L-~~~~~~~~l~----~l~~~r  595 (632)
T PRK05506        523 EVARLM-ADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PKGL-YAKARAGEIK----NFTGID  595 (632)
T ss_pred             HHHHHH-HhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Ccch-hhhccccccc----cccccc
Confidence             11111 12346677886555556665544433333446799999999999994 2310 0000011111    111111


Q ss_pred             HhHHHHHHhcCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287          156 LPVINYYARRGKLYTINA-VGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       156 ~~~~~~~~~~~~~~~I~~-~~~~~~v~~~i~~~i~~  190 (196)
                      .+   ++.....-+.||+ ..+++++.++|.+.+..
T Consensus       596 ~~---y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        596 SP---YEAPENPELRLDTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             cC---CCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence            11   1111234467776 67899998888777643

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.14  E-value=4.4e-11  Score=86.66  Aligned_cols=162  Identities=23%  Similarity=0.322  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChh-----hHHHHHHhhcCCCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEY-----GTTILNTIKEGKIV-   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~-----~~~~~~~l~~~~~~-   68 (196)
                      -+++|.|++|+||||+++.++   |......|.+.               +..+...++-     ..+..+++.-+... 
T Consensus        30 eiv~llG~NGaGKTTlLkti~---Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~  106 (237)
T COG0410          30 EIVALLGRNGAGKTTLLKTIM---GLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR  106 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcc
Confidence            488999999999999999999   87766555442               2222222221     11234444433111 


Q ss_pred             CH----HHHHHHHHHHHhc-CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH----HHHHHhhccCCCCCC
Q 029287           69 PS----EVTVSLIQKEMES-SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE----MVNRVLNRNEGRVDD  139 (196)
Q Consensus        69 ~~----~~~~~~i~~~l~~-~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~----~~~Rl~~r~~~~~~~  139 (196)
                      .+    ....+.+++.+.. .+...--...++.+++|++++++++...|.+ +.||+|.+-    +.+++...       
T Consensus       107 ~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl-LLLDEPs~GLaP~iv~~I~~~-------  178 (237)
T COG0410         107 RDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEA-------  178 (237)
T ss_pred             cccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE-EEecCCccCcCHHHHHHHHHH-------
Confidence            10    0001112221110 0011112344667799999999999999999 889999932    23332221       


Q ss_pred             cHHHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          140 NIDTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       140 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                       ...+.+.   ....-+++...+..++++..++.   |..+++.+++.+.
T Consensus       179 -i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~  227 (237)
T COG0410         179 -IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD  227 (237)
T ss_pred             -HHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence             1111110   00223344555666777766665   6677888888765

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.13  E-value=1.4e-09  Score=81.02  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=25.3

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ...+.+++|.|++||||||+++.|+..+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567999999999999999999999877

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.13  E-value=2.7e-09  Score=74.34  Aligned_cols=163  Identities=18%  Similarity=0.224  Sum_probs=86.1

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHh---CC--ceechhHHHHHHHhcCChhhHH-HHHHhhcCCCCCHHHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNY---GL--THLSAGELLRREIASNSEYGTT-ILNTIKEGKIVPSEVTVSLIQK   79 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~---~~--~~i~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~i~~   79 (196)
                      +.++++|=++|.|||||||++.+|.+++   |.  ..+|. |.+|..+..+-.+... -.+++         .....+.+
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG-DnvR~gL~~dLgFs~edR~eni---------RRvaevAk   89 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG-DNVRHGLNRDLGFSREDRIENI---------RRVAEVAK   89 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC-hhHhhcccCCCCCChHHHHHHH---------HHHHHHHH
Confidence            3456888889999999999999999997   43  23443 5566654433221111 11111         11223333


Q ss_pred             HHhcCCCCcEEEeCCCCCHH-HHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhH
Q 029287           80 EMESSDSKKFLIDGFPRSEE-NRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPV  158 (196)
Q Consensus        80 ~l~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (196)
                      .+.  +...+++-.+-+-.. .+..-...+.....+-||+|||.++|.+|=-+-          .+++-...-..+...+
T Consensus        90 ll~--daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKG----------LYkKAr~GeI~~fTGi  157 (197)
T COG0529          90 LLA--DAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKG----------LYKKARAGEIKNFTGI  157 (197)
T ss_pred             HHH--HCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchH----------HHHHHHcCCCCCCcCC
Confidence            333  233344444443333 333333334434556699999999999874432          1111111111111111


Q ss_pred             HHHHHh-cCcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287          159 INYYAR-RGKLYTINA-VGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       159 ~~~~~~-~~~~~~I~~-~~~~~~v~~~i~~~i~~  190 (196)
                      -.-|.. ..+-+.+|+ ..++++..+.|.+.+..
T Consensus       158 d~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~  191 (197)
T COG0529         158 DSPYEAPENPELHLDTDRNSVEECVEQILDLLKE  191 (197)
T ss_pred             CCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHh
Confidence            111222 346667885 57888888887776643

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.13  E-value=2.3e-10  Score=81.10  Aligned_cols=110  Identities=19%  Similarity=0.284  Sum_probs=68.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH---hcCCh-----------hhHHHHHHhhcCCC---CCHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI---ASNSE-----------YGTTILNTIKEGKI---VPSEVT   73 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~---~~~~~-----------~~~~~~~~l~~~~~---~~~~~~   73 (196)
                      .+++.|||||||||+++.++   |+...+.|.+.....   .++.+           .+....++...|..   ++....
T Consensus        33 ~vv~lGpSGcGKTTLLnl~A---Gf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R  109 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIA---GFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR  109 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHh---cCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHH
Confidence            45669999999999999999   877666555432211   11111           23334444444422   222222


Q ss_pred             HHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           74 VSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        74 ~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .....+.+.   ..+.....+..++.++.|++.+++++.-.|++ ++||+|+.-
T Consensus       110 ~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~-LlLDEPfgA  162 (259)
T COG4525         110 REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL-LLLDEPFGA  162 (259)
T ss_pred             HHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce-EeecCchhh
Confidence            333333333   33333334666888999999999999999999 889999943

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.12  E-value=3.5e-10  Score=88.23  Aligned_cols=172  Identities=18%  Similarity=0.285  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CCceechhHH---HHHHHhcC-------C-------hhhHHHHHHhhcCCC---
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL---LRREIASN-------S-------EYGTTILNTIKEGKI---   67 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~---~~~~~~~~-------~-------~~~~~~~~~l~~~~~---   67 (196)
                      .++|.|-|||||||++.+|..-+   |-..+...++   .++.+.+.       .       ....++-+.+.+|..   
T Consensus       315 TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~  394 (534)
T COG4172         315 TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE  394 (534)
T ss_pred             eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence            68999999999999999999765   2222222222   12211111       0       111223344444433   


Q ss_pred             --CCHHHHHHHHHHHHhcCCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           68 --VPSEVTVSLIQKEMESSDSKKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        68 --~~~~~~~~~i~~~l~~~~~~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                        .......+.+.+++...+.+.-...+||+    ++.|+.++++++-.+|.+ |.||+|+..+..-....    .-+-.
T Consensus       395 ~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~-i~LDEPTSALD~SVQaQ----vv~LL  469 (534)
T COG4172         395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL-ILLDEPTSALDRSVQAQ----VLDLL  469 (534)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcE-EEecCCchHhhHHHHHH----HHHHH
Confidence              33445566677777765555556777775    589999999999999999 77999995554443332    00000


Q ss_pred             HHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHH
Q 029287          142 DTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAV  187 (196)
Q Consensus       142 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~  187 (196)
                      ..++++   .-.|.+|+...+...|+...|+.   |...++.+++++.-.+.
T Consensus       470 r~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~  521 (534)
T COG4172         470 RDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHE  521 (534)
T ss_pred             HHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcH
Confidence            111111   12578888888888888655554   77888999998765443

>COG0645 Predicted kinase [General function prediction only]

Probab=99.12  E-value=7.8e-09  Score=71.70  Aligned_cols=137  Identities=20%  Similarity=0.252  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh------c
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME------S   83 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~------~   83 (196)
                      +++.+.|.+||||||+++.|.+.+|..++.+|.+ ++.+...+...       +....++........+..+.      .
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-rk~L~g~p~~~-------r~~~g~ys~~~~~~vy~~l~~~A~l~l   73 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-RKRLFGVPEET-------RGPAGLYSPAATAAVYDELLGRAELLL   73 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-HHHhcCCcccc-------cCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            4677899999999999999999999999999655 44444422110       00011111111111111111      2


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287           84 SDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus        84 ~~~~~~iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~  154 (196)
                      ..+..+|+|.-.....++........  .-+-..|.+++|.+++.+|+..|..+..+.+...+..+...+...
T Consensus        74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~~~~~  146 (170)
T COG0645          74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAEDEPW  146 (170)
T ss_pred             hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhhhCCc
Confidence            34677889987777666655444321  224445889999999999999995433344566655544444433

>PRK05439 pantothenate kinase; Provisional

Probab=99.12  E-value=1.1e-09  Score=84.13  Aligned_cols=40  Identities=25%  Similarity=0.353  Sum_probs=31.6

Q ss_pred             CCCCceEEEEEcCCCCChHHHHHHHHHHhC-------CceechhHHH
Q 029287            5 GGKGPFICFVLGGPGSGKGTQCAKIVKNYG-------LTHLSAGELL   44 (196)
Q Consensus         5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~~-------~~~i~~~~~~   44 (196)
                      ..+.|++|+|.|++||||||+++.|++.++       ...++.|+++
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            456789999999999999999999998663       3355666554

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.12  E-value=9.8e-10  Score=83.61  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CCceechhHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL   43 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~   43 (196)
                      +++|.|++||||||+++.|+..+   +..++..+++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence            47899999999999999999876   3445666655

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.11  E-value=5.5e-09  Score=76.72  Aligned_cols=158  Identities=14%  Similarity=0.244  Sum_probs=93.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcC---------ChhhHHHHHHhhcCCCCCHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASN---------SEYGTTILNTIKEGKIVPSEV   72 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~   72 (196)
                      .+..+|++.|.|+.|||++++.|.+.+.     ..+++.|++-|+.....         .+.+..+++.+.       ..
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a-------~~   82 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA-------KE   82 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH-------HH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH-------HH
Confidence            4558899999999999999999998873     44678888877654431         222333333332       23


Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec---ChHHHHHHHhhccCC----CC---CCcHH
Q 029287           73 TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC---PEEEMVNRVLNRNEG----RV---DDNID  142 (196)
Q Consensus        73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~---~~~~~~~Rl~~r~~~----~~---~~~~~  142 (196)
                      ..+.+...+...+++..|.|+--.+...|..+...+....--++|+++   +++.+.+.+......    ..   +...+
T Consensus        83 ~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~  162 (222)
T PF01591_consen   83 ALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIE  162 (222)
T ss_dssp             HHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHH
T ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHH
Confidence            456667777766778889998888888777777765444455688877   666777676654322    11   11346


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEEE
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYTI  171 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I  171 (196)
                      .+.+|++.|+....++-+...+...++.+
T Consensus       163 Df~~RI~~Ye~~YEpl~~e~d~~lsyIKi  191 (222)
T PF01591_consen  163 DFKKRIEHYEKVYEPLDEEEDEDLSYIKI  191 (222)
T ss_dssp             HHHHHHHHHHTT-----TTTTTTSEEEEE
T ss_pred             HHHHHHHhhcccccccccccccCceEEEE
Confidence            67788999998877775332334455553

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.11  E-value=4.2e-10  Score=91.48  Aligned_cols=171  Identities=17%  Similarity=0.205  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc-eechhHHH----------H---H----------------HHhcCChhhHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT-HLSAGELL----------R---R----------------EIASNSEYGTTIL   59 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~-~i~~~~~~----------~---~----------------~~~~~~~~~~~~~   59 (196)
                      -+++|.|-|||||||++..|...+... .+..|.++          .   +                .+.+....+..+.
T Consensus        36 E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~  115 (539)
T COG1123          36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR  115 (539)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHH
Confidence            488999999999999999999444221 11122221          0   0                1112223566677


Q ss_pred             HHhhcCCCCCHHHHHHHHHHHHhcCCC-CcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-
Q 029287           60 NTIKEGKIVPSEVTVSLIQKEMESSDS-KKFLIDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-  133 (196)
Q Consensus        60 ~~l~~~~~~~~~~~~~~i~~~l~~~~~-~~~iid~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-  133 (196)
                      +.+..+.............+.+...+- .....+.||+    ++.|++.++.++..+|++ +.+|+|+..+.--..+.- 
T Consensus       116 E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~L-LIaDEPTTaLDvt~q~qIL  194 (539)
T COG1123         116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKL-LIADEPTTALDVTTQAQIL  194 (539)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCE-EEECCCccccCHHHHHHHH
Confidence            777655444344444445555553221 1111167776    599999999999999999 779999932222111110 


Q ss_pred             ----CCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHH
Q 029287          134 ----EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAV  187 (196)
Q Consensus       134 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~  187 (196)
                          .-..+.+..      ..|.+|+...+.+++++..|+.   |...++.+++++.-.+-
T Consensus       195 ~llk~l~~e~g~a------~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hp  249 (539)
T COG1123         195 DLLKDLQRELGMA------VLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHP  249 (539)
T ss_pred             HHHHHHHHHcCcE------EEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCc
Confidence                000001122      2688899999999999776665   77788999998775433

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.10  E-value=9.4e-11  Score=95.49  Aligned_cols=169  Identities=18%  Similarity=0.223  Sum_probs=88.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH------hcCChhhHHHHHHhhcCC---CCCHHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI------ASNSEYGTTILNTIKEGK---IVPSEVTVSLIQKE   80 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~l~~~~---~~~~~~~~~~i~~~   80 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.....      .........+.+.+....   ..........+...
T Consensus        51 EivgIiGpNGSGKSTLLkiLa---GLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~el  127 (549)
T PRK13545         51 EIVGIIGLNGSGKSTLSNLIA---GVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI  127 (549)
T ss_pred             CEEEEEcCCCCCHHHHHHHHh---CCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence            478999999999999999999   776555554321100      000011112333332110   11222222222233


Q ss_pred             HhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH-----HHHHHH
Q 029287           81 MESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK-----RLQVFK  152 (196)
Q Consensus        81 l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~-----~~~~~~  152 (196)
                      +...+-.   ..-+..++.++.|++.+++++...|++ ++||+|+..+...-...       -.+.+.+     ....+.
T Consensus       128 Le~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L-LLLDEPTsgLD~~sr~~-------LlelL~el~~~G~TIIIV  199 (549)
T PRK13545        128 IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI-LVIDEALSVGDQTFTKK-------CLDKMNEFKEQGKTIFFI  199 (549)
T ss_pred             HHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE-EEEECCcccCCHHHHHH-------HHHHHHHHHhCCCEEEEE
Confidence            3321111   112456778899999999999999999 77999993222111110       0000110     011345


Q ss_pred             hchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHH
Q 029287          153 ALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~  189 (196)
                      +|....+..++++..++.   +...++++++.......++
T Consensus       200 SHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~  239 (549)
T PRK13545        200 SHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK  239 (549)
T ss_pred             ECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHH
Confidence            666666666666433332   3345677877766555444

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.10  E-value=8.2e-10  Score=84.32  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=24.9

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.|++|+|.|++||||||+++.|...+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll   86 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALL   86 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999999887665

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.10  E-value=1.4e-10  Score=90.99  Aligned_cols=165  Identities=16%  Similarity=0.238  Sum_probs=85.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChh-----hHHHHHHhhcCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEY-----GTTILNTIKEGK-   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~-----~~~~~~~l~~~~-   66 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+.                 ++.+...++.     ..++.+++..+. 
T Consensus        32 ei~gIiG~sGaGKSTLlr~I~---gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~  108 (343)
T TIGR02314        32 QIYGVIGASGAGKSTLIRCVN---LLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE  108 (343)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHH
Confidence            478999999999999999999   76655544331                 1111111110     112223222110 


Q ss_pred             --CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           67 --IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        67 --~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                        ..+.......+.+.++...-..+   -...++.++.|++.+++++...|++ +++|+|+.-+...-...    ..+-.
T Consensus       109 ~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i-LLlDEPts~LD~~t~~~----i~~lL  183 (343)
T TIGR02314       109 LDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV-LLCDEATSALDPATTQS----ILELL  183 (343)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCcccCCHHHHHH----HHHHH
Confidence              11222222233344443222221   1234556799999999999999999 77999993222211111    00000


Q ss_pred             HHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          142 DTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       142 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                      ..+.+   ....+.+|....+..++++..++.   |...+++++++.
T Consensus       184 ~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~  230 (343)
T TIGR02314       184 KEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS  230 (343)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            00110   012455677777777777544442   445567777753

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.10  E-value=8.2e-10  Score=76.50  Aligned_cols=112  Identities=21%  Similarity=0.243  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH--------------HhcCCh----hhHHHHHHhhcCC----C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE--------------IASNSE----YGTTILNTIKEGK----I   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~--------------~~~~~~----~~~~~~~~l~~~~----~   67 (196)
                      -+|+|+||+||||||+.++++   .+...+.|.++++.              ++...+    ++.++.+++....    .
T Consensus        30 e~iaitGPSG~GKStllk~va---~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~r  106 (223)
T COG4619          30 EFIAITGPSGCGKSTLLKIVA---SLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR  106 (223)
T ss_pred             ceEEEeCCCCccHHHHHHHHH---hccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhcc
Confidence            378899999999999999999   66555666554332              221111    1222222221110    0


Q ss_pred             CCHHHHHHHHHHHHhcCCCC-cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           68 VPSEVTVSLIQKEMESSDSK-KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        68 ~~~~~~~~~i~~~l~~~~~~-~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      -++......+.........- ..=+..++.+..|+.++.+.+...|++ ++||+++.-+
T Consensus       107 r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~I-LLLDE~TsAL  164 (223)
T COG4619         107 RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKI-LLLDEITSAL  164 (223)
T ss_pred             CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCce-EEecCchhhc
Confidence            11121122222222221110 011445778899999999999999998 8899998544

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.10  E-value=5.1e-09  Score=85.93  Aligned_cols=100  Identities=22%  Similarity=0.383  Sum_probs=73.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      ..+.+|++.|+|||||||+++.+++..|+.+++.|++-.                        .......+.+.+..  +
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~~--G  420 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALDQ--G  420 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHhC--C
Confidence            456788999999999999999999999999999876510                        01223344555553  5


Q ss_pred             CcEEEeCCCCCHHHHH---HHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           87 KKFLIDGFPRSEENRA---AFERIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~---~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      ..+|+|.-.....++.   .+++..+. +-..+++++|.+++.+|...|.
T Consensus       421 ~sVVIDaTn~~~~~R~~~i~lAk~~gv-~v~~i~~~~p~e~~~~Rn~~R~  469 (526)
T TIGR01663       421 KRCAIDNTNPDAASRAKFLQCARAAGI-PCRCFLFNAPLAQAKHNIAFRE  469 (526)
T ss_pred             CcEEEECCCCCHHHHHHHHHHHHHcCC-eEEEEEeCCCHHHHHHHHHhhc
Confidence            6788998776654444   44444543 4456899999999999999884

Note that the EC number for the kinase function is: 2.7.1.78

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.10  E-value=6.7e-10  Score=86.89  Aligned_cols=166  Identities=22%  Similarity=0.270  Sum_probs=85.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChh-------hHHHHHHhh--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEY-------GTTILNTIK--   63 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~-------~~~~~~~l~--   63 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+.                 ++.+....+.       ..++.+.+.  
T Consensus        48 e~~~lvG~sGsGKSTLlk~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~  124 (331)
T PRK15079         48 ETLGVVGESGCGKSTFARAII---GLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP  124 (331)
T ss_pred             CEEEEECCCCCCHHHHHHHHH---CCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHH
Confidence            378999999999999999999   65544333221                 1111111110       111222221  


Q ss_pred             ---cCCCCCHHHHHHHHHHHHhcCCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCC
Q 029287           64 ---EGKIVPSEVTVSLIQKEMESSDSKKFLIDG----FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGR  136 (196)
Q Consensus        64 ---~~~~~~~~~~~~~i~~~l~~~~~~~~iid~----~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~  136 (196)
                         .+...........+.+.+....-..-+.+.    ++.++.|++.++.++...|++ +++|+|+.-+..-....    
T Consensus       125 l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l-lilDEPts~LD~~~~~~----  199 (331)
T PRK15079        125 LRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL-IICDEPVSALDVSIQAQ----  199 (331)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCCccCCHHHHHH----
Confidence               111122222223333333322211112344    455699999999999999999 77999993222211111    


Q ss_pred             CCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          137 VDDNIDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       137 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ..+-...+.+   ....+.+|+...+..++++..++.   |...++.+++++.
T Consensus       200 i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~  252 (331)
T PRK15079        200 VVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN  252 (331)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence            0000011111   012566787777777777544442   4445677777643

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.10  E-value=3.7e-10  Score=98.64  Aligned_cols=112  Identities=23%  Similarity=0.331  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCCC-HHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIVP-SEVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~~-~~~~   73 (196)
                      ..++|.|++||||||+.++|.+.|    |-..++..++       +|..+....+    +..++.+++..|.+.. ....
T Consensus       380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i  459 (1228)
T KOG0055|consen  380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI  459 (1228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence            578999999999999999999887    4444443332       3443333332    3445778888776432 2222


Q ss_pred             HHHH-----HHHHhc-C-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           74 VSLI-----QKEMES-S-DSKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        74 ~~~i-----~~~l~~-~-~~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+..     .+.+.. . +.+.++.++   ++.+++||+++++++...|.+ ++||+++
T Consensus       460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I-LLLDEaT  517 (1228)
T KOG0055|consen  460 EEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI-LLLDEAT  517 (1228)
T ss_pred             HHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE-EEecCcc
Confidence            1111     111111 1 223444443   667899999999999999998 8899988

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.10  E-value=4.7e-10  Score=89.04  Aligned_cols=166  Identities=17%  Similarity=0.241  Sum_probs=87.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+..            +.+....+     ...++.+++..+.   ...
T Consensus        30 e~~~l~G~nGsGKSTLL~~ia---Gl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~  106 (369)
T PRK11000         30 EFVVFVGPSGCGKSTLLRMIA---GLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK  106 (369)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC
Confidence            478999999999999999999   766555444321            11111111     0112333333211   112


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .......+.+.+...+-..+   -...++.++.|++.+++++...|++ ++||+|+..+.......    ..+....+.+
T Consensus       107 ~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l-LLLDEPts~LD~~~~~~----l~~~L~~l~~  181 (369)
T PRK11000        107 KEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV-FLLDEPLSNLDAALRVQ----MRIEISRLHK  181 (369)
T ss_pred             HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHH----HHHHHHHHHH
Confidence            22222233333333222111   1344667799999999999999999 88999994433322221    0000111111


Q ss_pred             ---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 ---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                         ....+.+|....+..++++..++.   |...++++++++.
T Consensus       182 ~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             HhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence               012456677766666666433332   3345677777654

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.09  E-value=5.3e-11  Score=88.25  Aligned_cols=167  Identities=20%  Similarity=0.314  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------------HHHhcCCh------hhHHHHHHhhcC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------------REIASNSE------YGTTILNTIKEG---   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------------~~~~~~~~------~~~~~~~~l~~~---   65 (196)
                      -.++|.|++||||||+++.|.   |+.....|.+..               +......+      ...++.+.+..|   
T Consensus        31 e~~~i~G~nGsGKSTL~~~l~---GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n  107 (235)
T COG1122          31 ERVLLIGPNGSGKSTLLKLLN---GLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN  107 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHc---CcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh
Confidence            478889999999999999999   876665554411               11111100      122233333332   


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           66 KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        66 ~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                      ..++.......+.+++........   -.-.++.++.|+++++..+...|++ ++||+|+.-+..+-.+.    ......
T Consensus       108 ~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i-liLDEPta~LD~~~~~~----l~~~l~  182 (235)
T COG1122         108 LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI-LLLDEPTAGLDPKGRRE----LLELLK  182 (235)
T ss_pred             cCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE-EEEcCCCCCCCHHHHHH----HHHHHH
Confidence            223344455566666665443322   1333556799999999999999999 77999993222221111    000001


Q ss_pred             HHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHH
Q 029287          143 TVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQV  184 (196)
Q Consensus       143 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i  184 (196)
                      .+.+.   .....+|+...+..+++...++.   +..++++.++++..
T Consensus       183 ~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~  230 (235)
T COG1122         183 KLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA  230 (235)
T ss_pred             HHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence            11110   11345566666666666443332   44567788887664

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.09  E-value=4.6e-09  Score=74.35  Aligned_cols=154  Identities=14%  Similarity=0.157  Sum_probs=82.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC--CceechhHHHHHHHhcCCh---h-----------hHHHHHHhhcCCCCCHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG--LTHLSAGELLRREIASNSE---Y-----------GTTILNTIKEGKIVPSEVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~--~~~i~~~~~~~~~~~~~~~---~-----------~~~~~~~l~~~~~~~~~~~   73 (196)
                      .+|+|-|+|-|||||+++.|.+.+.  +.++..|.+.... .+...   .           +......+        ...
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~   72 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMM-PPGRYRPGDGLEPAGDRPDGGPLFRRLY--------AAM   72 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS--GGGGTSTTSEEEETTSEEE-HHHHHHH--------HHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhc-CcccccCCccccccccCCchhHHHHHHH--------HHH
Confidence            4789999999999999999999985  4567776665432 21100   0           01111100        111


Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCHHH-HHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSEEN-RAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFK  152 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~  152 (196)
                      +..+.....  .+..+|+|....+... ...+.+.+...|-++|-+.||.+++.+|-..|. +|.. ..  .+.+..  .
T Consensus        73 ~~~iaa~a~--aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg-DR~~-G~--a~~q~~--~  144 (174)
T PF07931_consen   73 HAAIAAMAR--AGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG-DRPI-GL--AAWQAE--H  144 (174)
T ss_dssp             HHHHHHHHH--TT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT-SSST-TH--HHHHTT--G
T ss_pred             HHHHHHHHh--CCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC-Ccch-HH--HHHHHh--h
Confidence            222333333  3567889987766554 444446676677777889999999999988883 3322 21  111111  1


Q ss_pred             hchHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287          153 ALNLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVF  188 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i  188 (196)
                      -|.        ....-+.||++ .++++..+.|.+.+
T Consensus       145 Vh~--------~~~YDleVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  145 VHE--------GGRYDLEVDTSATSPEECAREILARL  173 (174)
T ss_dssp             GGT--------T---SEEEETTSS-HHHHHHHHHTT-
T ss_pred             ccc--------CCCCCEEEECCCCCHHHHHHHHHHHh
Confidence            111        11122568865 58999988876654

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.09  E-value=3.8e-11  Score=84.94  Aligned_cols=95  Identities=13%  Similarity=0.274  Sum_probs=63.9

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-----------HHHHHHHhhccCCCCCCcHH
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-----------EEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-----------~~~~~Rl~~r~~~~~~~~~~  142 (196)
                      .+.+.......+........++++++||+.+...+.+.|.+ ++||+|.           ..+..++..+    .    .
T Consensus       128 ide~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~l-LLlDEPvAGMTd~Et~~taeLl~~la~~----h----s  198 (249)
T COG4674         128 IDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKL-LLLDEPVAGMTDAETEKTAELLKSLAGK----H----S  198 (249)
T ss_pred             HHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcE-EEecCccCCCcHHHHHHHHHHHHHHhcC----c----e
Confidence            44444444444445555666889999999999999999999 8899997           2223333222    0    1


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                            ....+|+......++++..++.   |-++++.++|.+.
T Consensus       199 ------ilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d  236 (249)
T COG4674         199 ------ILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND  236 (249)
T ss_pred             ------EEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence                  1334566677777787766665   6789999998754

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=99.09  E-value=2e-08  Score=76.66  Aligned_cols=43  Identities=21%  Similarity=0.427  Sum_probs=34.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA   49 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~   49 (196)
                      +.|++|+|.|++||||||++..|+++||+..+-..|.+++.+.
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R  132 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMR  132 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHH
Confidence            4689999999999999999999999999885444566664443

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.09  E-value=3.2e-10  Score=95.41  Aligned_cols=108  Identities=17%  Similarity=0.217  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|+|++||||||+++.|...+    .+.|.+              +++.+...++    +..++++++..+.+ ..+
T Consensus       377 ~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~  452 (588)
T PRK11174        377 QRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASD  452 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCH
Confidence            578999999999999999999444    233322              3344443333    24457888877644 444


Q ss_pred             HHHHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +...+.+.     +.+.. +. .+..+-+   .++.+++|++++++++..+|++ ++||+|+
T Consensus       453 eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I-liLDE~T  513 (588)
T PRK11174        453 EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL-LLLDEPT  513 (588)
T ss_pred             HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            43333222     12221 11 2333333   3667899999999999999999 7799998

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.08  E-value=4.3e-10  Score=88.76  Aligned_cols=165  Identities=24%  Similarity=0.315  Sum_probs=85.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEGK   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~~   66 (196)
                      -+++|.|++||||||++++|.   |....+.|++.                  ++.+....+     ...++.+++..+.
T Consensus        20 ei~~l~G~sGsGKSTLLr~L~---Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~   96 (363)
T TIGR01186        20 EIFVIMGLSGSGKSTTVRMLN---RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGP   96 (363)
T ss_pred             CEEEEECCCCChHHHHHHHHh---CCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHH
Confidence            478999999999999999999   66554444331                  111111110     0112233332111


Q ss_pred             ---CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           67 ---IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        67 ---~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                         ..........+.+.+...+-..+   ....++.++.|++.+++++...|++ +++|+|+.-+..-..+.    ..+-
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i-LLlDEP~saLD~~~r~~----l~~~  171 (363)
T TIGR01186        97 ELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI-LLMDEAFSALDPLIRDS----MQDE  171 (363)
T ss_pred             HHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHH----HHHH
Confidence               11222223334444443222222   1233556799999999999999998 88999992221111111    0000


Q ss_pred             HHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          141 IDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       141 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                      ...+.+   +...+.+|+...+..++++..++.   |...++++++..
T Consensus       172 l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~  219 (363)
T TIGR01186       172 LKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR  219 (363)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence            111111   122566677766666666443332   444567777654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=99.08  E-value=4.4e-10  Score=67.61  Aligned_cols=60  Identities=25%  Similarity=0.460  Sum_probs=44.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      +|+|.|++||||||+++.|++.+   +..+++.                                               
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~-----------------------------------------------   33 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE-----------------------------------------------   33 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence            47889999999999999999885   2222221                                               


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec
Q 029287           88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC  120 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~  120 (196)
                      .+|+||+.....++.   ......+|+.||+|+
T Consensus        34 ~~I~eg~~~~~~~~~---~~~~~~~d~~Iyld~   63 (69)
T cd02019          34 IVILEGLYASYKSRD---ARIRDLADLKIYLDA   63 (69)
T ss_pred             EEEecchhhhhhhHH---hhccccccEEEEEEe
Confidence            788999876554433   245568899999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.08  E-value=2.1e-10  Score=86.14  Aligned_cols=111  Identities=17%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH--HhcCC-----hhhHHHHHHhhcCCC-C-CHHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE--IASNS-----EYGTTILNTIKEGKI-V-PSEVTVSLIQKE   80 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~--~~~~~-----~~~~~~~~~l~~~~~-~-~~~~~~~~i~~~   80 (196)
                      -+++|.|++||||||++++|+   |....+.|.+....  +...+     ....++.+++..... . ........+.+.
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~---G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~  102 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLA---GVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP  102 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence            488999999999999999999   77655555442211  01000     011123333321100 0 001111222222


Q ss_pred             HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           81 MESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        81 l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      +.......--+..++.++.|++.++.++...|++ ++||+|+..
T Consensus       103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l-lllDEPt~~  145 (246)
T cd03237         103 LQIEQILDREVPELSGGELQRVAIAACLSKDADI-YLLDEPSAY  145 (246)
T ss_pred             cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence            2221111112445778899999999999999999 779999943

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.07  E-value=5.7e-10  Score=86.39  Aligned_cols=83  Identities=18%  Similarity=0.314  Sum_probs=47.4

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH-----HHHHHhchHhHHHHHHhcC
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR-----LQVFKALNLPVINYYARRG  166 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  166 (196)
                      ..++.++.|++.++.++...|++ ++||+|+..+...-...       -.+.+.+.     ...+.+|+...+..++++.
T Consensus       164 ~~LSgGqkqrvalA~aL~~~P~l-LlLDEPt~~LD~~~~~~-------l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv  235 (305)
T PRK13651        164 FELSGGQKRRVALAGILAMEPDF-LVFDEPTAGLDPQGVKE-------ILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT  235 (305)
T ss_pred             hhCCHHHHHHHHHHHHHHhCCCE-EEEeCCCCCCCHHHHHH-------HHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence            34666799999999999999999 77999993222111111       00111110     1145566666666666643


Q ss_pred             cEEE---EeCCCCHhHHHH
Q 029287          167 KLYT---INAVGTVDEIFE  182 (196)
Q Consensus       167 ~~~~---I~~~~~~~~v~~  182 (196)
                      .++.   |...+++++++.
T Consensus       236 ~vl~~G~i~~~g~~~~~~~  254 (305)
T PRK13651        236 IFFKDGKIIKDGDTYDILS  254 (305)
T ss_pred             EEEECCEEEEECCHHHHhc
Confidence            3332   334566777654

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.07  E-value=1.4e-10  Score=92.54  Aligned_cols=162  Identities=20%  Similarity=0.328  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCC----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGK----   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~----   66 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+.              ++.+....+     ......+++..+.    
T Consensus        30 eiv~liGpNGaGKSTLLk~La---Gll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~  106 (402)
T PRK09536         30 SLVGLVGPNGAGKTTLLRAIN---GTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR  106 (402)
T ss_pred             CEEEEECCCCchHHHHHHHHh---cCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc
Confidence            478999999999999999999   65544444221              111111111     1122334333221    


Q ss_pred             -CCC--HHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           67 -IVP--SEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        67 -~~~--~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                       ...  .......+.+.++..+...   --+..++.++.|++.+++++...|++ ++||+|+.-+--.-...       -
T Consensus       107 ~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i-LLLDEPtsgLD~~~~~~-------l  178 (402)
T PRK09536        107 SRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV-LLLDEPTASLDINHQVR-------T  178 (402)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCcccCCHHHHHH-------H
Confidence             011  1112233344444322211   12455777899999999999999999 78999993222211111       0


Q ss_pred             HHHHHH-----HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          141 IDTVRK-----RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       141 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                      .+.+.+     ......+|....+..++++.-++.   +...++++++..
T Consensus       179 ~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~  228 (402)
T PRK09536        179 LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT  228 (402)
T ss_pred             HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence            011111     011344566677777777543332   445677887653

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.07  E-value=1.8e-10  Score=90.31  Aligned_cols=163  Identities=16%  Similarity=0.198  Sum_probs=85.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhc-C--CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKE-G--KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~-~--~~~   68 (196)
                      -+++|.||+||||||+.++|+   |....+.|++.             ++.+...++     ...+..+++.. +  ...
T Consensus        68 ei~gLlGpNGaGKSTLl~~L~---Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~  144 (340)
T PRK13536         68 ECFGLLGPNGAGKSTIARMIL---GMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM  144 (340)
T ss_pred             CEEEEECCCCCCHHHHHHHHH---cCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCC
Confidence            588999999999999999999   76554444321             111111111     11122333321 0  011


Q ss_pred             CHHHHHHHH---HHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH
Q 029287           69 PSEVTVSLI---QKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR  145 (196)
Q Consensus        69 ~~~~~~~~i---~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~  145 (196)
                      ........+   .+.+.......--+..++.++.|++.++.++...|++ ++||+|+.-+.-.-...       -.+.+.
T Consensus       145 ~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l-LiLDEPt~gLD~~~r~~-------l~~~l~  216 (340)
T PRK13536        145 STREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL-LILDEPTTGLDPHARHL-------IWERLR  216 (340)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE-EEEECCCCCCCHHHHHH-------HHHHHH
Confidence            111111222   2233322211222567888999999999999999999 77999992221111100       000111


Q ss_pred             H-----HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          146 K-----RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       146 ~-----~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      +     ....+.+|....++.++++..++.   |...++++++.+.
T Consensus       217 ~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        217 SLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            1     011455566666777776544432   4455677776543

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.07  E-value=5.4e-10  Score=95.98  Aligned_cols=109  Identities=22%  Similarity=0.331  Sum_probs=68.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|+|++||||||+++.|+   |....+.|.+              +++.+...++    ...++++++..+.+ .++
T Consensus       506 e~vaIvG~sGsGKSTLlklL~---gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~  582 (710)
T TIGR03796       506 QRVALVGGSGSGKSTIAKLVA---GLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPD  582 (710)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCH
Confidence            478999999999999999999   4443333322              2344333332    23457777765533 344


Q ss_pred             HHHHHHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +...+.+..     .+.. . +.+..+-+   .++.++.|++++++++..+|++ ++||+|+
T Consensus       583 ~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i-liLDEpt  643 (710)
T TIGR03796       583 ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI-LILDEAT  643 (710)
T ss_pred             HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE-EEEECcc
Confidence            433332221     1211 1 12333333   3667899999999999999999 7799999

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=3.7e-10  Score=81.85  Aligned_cols=163  Identities=20%  Similarity=0.307  Sum_probs=88.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc--eechhHH---------------HHHHHh-----cCChhhHHHHHHhh----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT--HLSAGEL---------------LRREIA-----SNSEYGTTILNTIK----   63 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~~~~~---------------~~~~~~-----~~~~~~~~~~~~l~----   63 (196)
                      -+-+|+||+||||||++..|+   |.+  .++.|++               .+..+.     +..-.|.++.++++    
T Consensus        31 EvhaiMGPNGsGKSTLa~~i~---G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n  107 (251)
T COG0396          31 EVHAIMGPNGSGKSTLAYTIM---GHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMN  107 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHH
Confidence            467889999999999999999   644  2333333               222111     11112333333332    


Q ss_pred             cCCCCC--HHHHHHHHHHHHhcCCC-----CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH-----------HH
Q 029287           64 EGKIVP--SEVTVSLIQKEMESSDS-----KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE-----------EM  125 (196)
Q Consensus        64 ~~~~~~--~~~~~~~i~~~l~~~~~-----~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~-----------~~  125 (196)
                      ......  .......+.+.+....-     .-.+-.+|+.+...+..+.+.+...|++ ..||+|..           ..
T Consensus       108 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl-~ILDE~DSGLDIdalk~V~~~  186 (251)
T COG0396         108 ARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKL-AILDEPDSGLDIDALKIVAEG  186 (251)
T ss_pred             hhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCE-EEecCCCcCccHHHHHHHHHH
Confidence            111110  12223333333332211     2235778999999999999999999999 56999882           12


Q ss_pred             HHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE-----EeCCCCHhHHHHHHHHH-HHhh
Q 029287          126 VNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT-----INAVGTVDEIFEQVRAV-FAAL  191 (196)
Q Consensus       126 ~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----I~~~~~~~~v~~~i~~~-i~~~  191 (196)
                      ++++...       ....      ...+|...+.++.. +..+++     |..++++ ++.+++++. +.++
T Consensus       187 i~~lr~~-------~~~~------liITHy~rll~~i~-pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~~  243 (251)
T COG0396         187 INALREE-------GRGV------LIITHYQRLLDYIK-PDKVHVLYDGRIVKSGDP-ELAEELEEKGYDWL  243 (251)
T ss_pred             HHHHhcC-------CCeE------EEEecHHHHHhhcC-CCEEEEEECCEEEecCCH-HHHHHHHHhchHHh
Confidence            2222211       1011      33445555555543 334443     6677888 788887643 4443

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.06  E-value=1e-09  Score=81.96  Aligned_cols=109  Identities=24%  Similarity=0.377  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEGK-   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~~-   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                 ++.+...++     ...++.+++..+. 
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~  103 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIV---GLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR  103 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHh
Confidence            478999999999999999999   65544433221                 111111111     1122333332210 


Q ss_pred             ---CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 ---IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ---~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                         ..........+.+.+...+-..+   -+..++.++.|++.+++++...|++ ++||+|+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l-lllDEPt  164 (235)
T cd03261         104 EHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL-LLYDEPT  164 (235)
T ss_pred             hccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence               11222222223333332221111   2344677899999999999999998 7799999

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.05  E-value=3.1e-10  Score=86.64  Aligned_cols=109  Identities=16%  Similarity=0.241  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh------hHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY------GTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~------~~~~~~~l~~~~---   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++.+....+.      ...+.+++..+.   
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~  108 (274)
T PRK13647         32 SKTALLGPNGAGKSTLLLHLN---GIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM  108 (274)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc
Confidence            588999999999999999999   65444433221              1112211111      112334333221   


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..........+...+....-..   .....++.++.|++.+++++...|++ ++||+|+
T Consensus       109 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l-lllDEPt  166 (274)
T PRK13647        109 GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV-IVLDEPM  166 (274)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence            1122222223333343322111   12445777899999999999999999 7799999

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.05  E-value=1.2e-09  Score=84.49  Aligned_cols=109  Identities=18%  Similarity=0.244  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~   68 (196)
                      -+++|.||+||||||++++|+   |....+.|.+.             ++.+...++     ......+++...   ...
T Consensus        29 ei~~l~G~NGaGKTTLl~~l~---Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~  105 (301)
T TIGR03522        29 RIVGFLGPNGAGKSTTMKIIT---GYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM  105 (301)
T ss_pred             eEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCC
Confidence            488999999999999999999   76555544331             111111111     111233333211   111


Q ss_pred             CHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 PSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.......+.+.+..   ......-+..++.++.|++.++.++...|.+ ++||+|+
T Consensus       106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-liLDEPt  161 (301)
T TIGR03522       106 KGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV-LILDEPT  161 (301)
T ss_pred             CHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            212112223333332   2211223566888899999999999999999 7899999

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.05  E-value=1.1e-09  Score=85.57  Aligned_cols=86  Identities=13%  Similarity=0.219  Sum_probs=50.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEE
Q 029287           93 GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGKLY  169 (196)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  169 (196)
                      .++.++.|++.++.++...|++ +++|+|+.-+.......    ..+-...+.+   ....+.+|+...+..+++...++
T Consensus       153 ~LSgGq~QRv~iArAL~~~P~l-lilDEPts~LD~~~~~~----il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm  227 (326)
T PRK11022        153 QLSGGMSQRVMIAMAIACRPKL-LIADEPTTALDVTIQAQ----IIELLLELQQKENMALVLITHDLALVAEAAHKIIVM  227 (326)
T ss_pred             hCCHHHHHHHHHHHHHHhCCCE-EEEeCCCCCCCHHHHHH----HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3555699999999999999998 77999993222111111    0000001111   01256677777777777755444


Q ss_pred             E---EeCCCCHhHHHHH
Q 029287          170 T---INAVGTVDEIFEQ  183 (196)
Q Consensus       170 ~---I~~~~~~~~v~~~  183 (196)
                      .   |...++.+++++.
T Consensus       228 ~~G~ive~g~~~~~~~~  244 (326)
T PRK11022        228 YAGQVVETGKAHDIFRA  244 (326)
T ss_pred             ECCEEEEECCHHHHhhC
Confidence            3   5566777777654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.05  E-value=3.2e-10  Score=95.02  Aligned_cols=112  Identities=21%  Similarity=0.323  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC----ceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCC-CCHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL----THLSAGEL-------LRREIASNSE----YGTTILNTIKEGKI-VPSEVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~----~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~   73 (196)
                      -.++|.|++||||||+++.|.+.|..    ..++.-++       +|+.+...++    ...++++++..|.+ ..++.+
T Consensus       356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei  435 (567)
T COG1132         356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI  435 (567)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence            47889999999999999999977732    22321111       3444443332    34568888888866 355444


Q ss_pred             HHHHHHH-----Hhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           74 VSLIQKE-----MES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        74 ~~~i~~~-----l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+....+     +.. ++ .+..+-+   .++.+++|++++++++..+|.+ +.||+++
T Consensus       436 ~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~I-LILDEaT  493 (567)
T COG1132         436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI-LILDEAT  493 (567)
T ss_pred             HHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCE-EEEeccc
Confidence            3333222     222 12 2444432   3666799999999999999988 7799988

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.05  E-value=9.8e-10  Score=91.37  Aligned_cols=115  Identities=27%  Similarity=0.394  Sum_probs=68.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceech---hHH---HHHHHhcCCh----hhHHHHHHhhcCCC-CCHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSA---GEL---LRREIASNSE----YGTTILNTIKEGKI-VPSEVTV   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~---~~~---~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~   74 (196)
                      -.++|+|++||||||+++.|...+    |-..++.   .++   +++.+...++    +..++++++..+.+ ..++...
T Consensus       362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~  441 (529)
T TIGR02868       362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELW  441 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHH
Confidence            578999999999999999999444    2112221   122   1222233332    24457888877643 3344333


Q ss_pred             HHHHH-----HHhc-CCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           75 SLIQK-----EMES-SDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        75 ~~i~~-----~l~~-~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      +.+..     .+.. +++ +..+-+   .++.++.|++++++++..+|++ ++||+|+..+
T Consensus       442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i-liLDE~TSaL  501 (529)
T TIGR02868       442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI-LLLDEPTEHL  501 (529)
T ss_pred             HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccC
Confidence            22221     1111 111 333322   3667799999999999999998 7799998443

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.04  E-value=2e-09  Score=79.54  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +|+|.|++||||||+++.|+..+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999887

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.04  E-value=4.2e-10  Score=87.18  Aligned_cols=109  Identities=18%  Similarity=0.255  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhc-C--CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKE-G--KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~-~--~~~   68 (196)
                      -+++|.|++||||||++++|+   |....+.|++.             ++.+...++     ...++.+++.. .  ...
T Consensus        31 e~~~l~G~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~  107 (303)
T TIGR01288        31 ECFGLLGPNGAGKSTIARMLL---GMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM  107 (303)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC
Confidence            488999999999999999999   65544433321             111111111     11123333321 0  011


Q ss_pred             CHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 PSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ........+.+.+.   ......--+..++.++.|++.++.++...|++ ++||+|+
T Consensus       108 ~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt  163 (303)
T TIGR01288       108 STREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL-LILDEPT  163 (303)
T ss_pred             CHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            21111122222333   21111112456778899999999999999999 7899999

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.04  E-value=2.4e-09  Score=80.33  Aligned_cols=31  Identities=26%  Similarity=0.537  Sum_probs=27.2

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       143 ~~~LSgG~~qrv~la~al~~~p~l-lllDEPt  173 (243)
T TIGR02315       143 ADQLSGGQQQRVAIARALAQQPDL-ILADEPI  173 (243)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            345777899999999999999998 7799999

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.03  E-value=2.8e-10  Score=84.15  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~   68 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.             ++.+....+     ...++.+++...   ...
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~  105 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLT---GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL  105 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCC
Confidence            478999999999999999999   66544444321             111111111     011223332211   011


Q ss_pred             CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           69 PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      +.......+.+.+....-.   ..-+..++.++.|++.++.++...|++ ++||+|+.
T Consensus       106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEP~~  162 (220)
T cd03263         106 PKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV-LLLDEPTS  162 (220)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE-EEECCCCC
Confidence            1111112223333321111   112345777899999999999999999 77999993

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.02  E-value=5.6e-09  Score=79.22  Aligned_cols=132  Identities=20%  Similarity=0.246  Sum_probs=64.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---C--CceechhHHHHHHHhc-CChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---G--LTHLSAGELLRREIAS-NSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES   83 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~--~~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~   83 (196)
                      .+|+|+|.|||||||+++.|++.+   +  ..+++.+.+....-.. ........+.           .....+.+.+. 
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~-----------~l~s~v~r~ls-   69 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARG-----------SLKSAVERALS-   69 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHH-----------HHHHHHHHHHT-
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHH-----------HHHHHHHHhhc-
Confidence            478889999999999999999986   2  2334432222010000 0001111111           22344455554 


Q ss_pred             CCCCcEEEeCCCC--CHH-HHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchH
Q 029287           84 SDSKKFLIDGFPR--SEE-NRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNL  156 (196)
Q Consensus        84 ~~~~~~iid~~~~--~~~-~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~  156 (196)
                       ....+|+|+.-.  ++. +...+++... .+-.+||+++|.+.+.+|=.+|.... .-..+.+......|+..+.
T Consensus        70 -~~~iVI~Dd~nYiKg~RYelyclAr~~~-~~~c~i~~~~~~e~~~~~N~~R~~~~-~~~~e~i~~m~~RfE~P~~  142 (270)
T PF08433_consen   70 -KDTIVILDDNNYIKGMRYELYCLARAYG-TTFCVIYCDCPLETCLQRNSKRPEPE-RYPEETIDDMIQRFEEPDP  142 (270)
T ss_dssp             -T-SEEEE-S---SHHHHHHHHHHHHHTT--EEEEEEEE--HHHHHHHHHHTT-S---S-HHHHHHHHHH---TTS
T ss_pred             -cCeEEEEeCCchHHHHHHHHHHHHHHcC-CCEEEEEECCCHHHHHHhhhccCCCC-CCCHHHHHHHHHHhcCCCC
Confidence             347888997433  333 2333444444 44556999999999999999884221 1245666666666666643

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=1.3e-09  Score=83.82  Aligned_cols=109  Identities=22%  Similarity=0.359  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCChh------hHHHHHHhhcC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSEY------GTTILNTIKEG   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~~------~~~~~~~l~~~   65 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.                  ++.+....+.      ...+.+.+..+
T Consensus        33 e~v~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~  109 (288)
T PRK13643         33 SYTALIGHTGSGKSTLLQHLN---GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG  109 (288)
T ss_pred             CEEEEECCCCChHHHHHHHHh---cCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhH
Confidence            478999999999999999999   66554444221                  1111111111      11333333222


Q ss_pred             C---CCCHHHHHHHHHHHHhcCCCC----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 K---IVPSEVTVSLIQKEMESSDSK----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 ~---~~~~~~~~~~i~~~l~~~~~~----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .   ..+.......+.+.+...+-.    .--...++.++.|++.++.++...|++ ++||+|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~i-llLDEPt  172 (288)
T PRK13643        110 PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEV-LVLDEPT  172 (288)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence            1   112222233344444322211    112344667799999999999999998 7799999

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.02  E-value=1.2e-09  Score=82.40  Aligned_cols=31  Identities=23%  Similarity=0.554  Sum_probs=27.2

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.++.++...|++ ++||+|+
T Consensus       142 ~~~LS~Gq~qrv~la~al~~~p~l-llLDEPt  172 (250)
T PRK11264        142 PRRLSGGQQQRVAIARALAMRPEV-ILFDEPT  172 (250)
T ss_pred             hhhCChHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            445777899999999999999998 7799999

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.02  E-value=3e-10  Score=84.87  Aligned_cols=31  Identities=19%  Similarity=0.500  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       141 ~~~LSgG~~qrv~la~al~~~p~l-lllDEPt  171 (236)
T cd03219         141 AGELSYGQQRRLEIARALATDPKL-LLLDEPA  171 (236)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            344677899999999999999998 7799999

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.02  E-value=3.4e-10  Score=82.83  Aligned_cols=111  Identities=21%  Similarity=0.257  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------HHHHhcCChh------hHHHHHHhhcCCCC-C-H
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------RREIASNSEY------GTTILNTIKEGKIV-P-S   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------~~~~~~~~~~------~~~~~~~l~~~~~~-~-~   70 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.           ++.+....+.      ...+.+++...... . .
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~  103 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILA---GLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG  103 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCcc
Confidence            488999999999999999999   65544433221           1111111111      11334444322111 1 1


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ......+.+.+............++.++.|++.+++++...|++ ++||+|+..
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~  156 (205)
T cd03226         104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL-LIFDEPTSG  156 (205)
T ss_pred             HHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE-EEEeCCCcc
Confidence            11112222222221111112445777899999999999999998 889999944

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.01  E-value=1.5e-10  Score=99.16  Aligned_cols=112  Identities=21%  Similarity=0.321  Sum_probs=67.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCC-CCHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKI-VPSEVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~   73 (196)
                      -.++|+|++||||||+++.|...+    |-..++.-++       +++.+...++    ...++++++..+.. .+++..
T Consensus       508 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i  587 (711)
T TIGR00958       508 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEI  587 (711)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHH
Confidence            478999999999999999999555    2222221111       2333333222    24457888876643 333333


Q ss_pred             HHHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           74 VSLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        74 ~~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+.+..     .+.. . +.+..+-+   .++.+++|++++++++..+|++ ++||+|+
T Consensus       588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I-LILDEpT  645 (711)
T TIGR00958       588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV-LILDEAT  645 (711)
T ss_pred             HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEEccc
Confidence            222211     1111 1 11223322   3667799999999999999998 7799998

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.01  E-value=8.2e-10  Score=82.82  Aligned_cols=109  Identities=22%  Similarity=0.291  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH---------------HHHHHhcCChh-----hHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL---------------LRREIASNSEY-----GTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~---------------~~~~~~~~~~~-----~~~~~~~l~~~~---   66 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+               .++.+....+.     ...+.+++....   
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~  106 (241)
T PRK10895         30 EIVGLLGPNGAGKTTTFYMVV---GIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR  106 (241)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc
Confidence            488999999999999999999   6654444322               11111111111     112333332211   


Q ss_pred             -CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 -IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 -~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ..........+.+.+...+-.   ..-...++.++.|++.++.++...|++ ++||+|+
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt  165 (241)
T PRK10895        107 DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF-ILLDEPF  165 (241)
T ss_pred             cccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence             011111112223333321111   112455778899999999999999998 7799999

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.01  E-value=2.4e-09  Score=80.21  Aligned_cols=31  Identities=23%  Similarity=0.458  Sum_probs=27.2

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       142 ~~~LS~G~~qrv~la~al~~~p~l-lllDEPt  172 (241)
T cd03256         142 ADQLSGGQQQRVAIARALMQQPKL-ILADEPV  172 (241)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence            345777899999999999999998 7799999

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.01  E-value=1.2e-09  Score=93.67  Aligned_cols=109  Identities=22%  Similarity=0.320  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|+|++||||||+++.|...|   ..+.|.+              +++.+...++    ...++++++..+.+ ..+
T Consensus       492 ~~iaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~  568 (694)
T TIGR03375       492 EKVAIIGRIGSGKSTLLKLLLGLY---QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADD  568 (694)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCH
Confidence            478999999999999999999444   3333322              2333333333    23467888877654 344


Q ss_pred             HHHHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +...+.+.     +.+.. .. .+..+-+   .++.++.|++++++++..+|++ ++||+|+
T Consensus       569 ~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i-liLDE~T  629 (694)
T TIGR03375       569 EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI-LLLDEPT  629 (694)
T ss_pred             HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            43332222     11221 11 1333322   3667799999999999999999 7799998

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.01  E-value=4e-10  Score=83.24  Aligned_cols=112  Identities=22%  Similarity=0.327  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEGK   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~~   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                  ++.+....+     ....+.+.+..+.
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~  107 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILG---GLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL  107 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHh---CCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHH
Confidence            478999999999999999999   65544433221                  111111111     1112333332211


Q ss_pred             C---CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           67 I---VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        67 ~---~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      .   .........+.+.+...+-.   ......++.++.|++.+++++...|++ ++||+|+..+
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-llLDEP~~~L  171 (218)
T cd03255         108 LLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI-ILADEPTGNL  171 (218)
T ss_pred             hhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE-EEEcCCcccC
Confidence            0   11111112233333322211   112345777899999999999999998 7799999443

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.01  E-value=3e-10  Score=89.33  Aligned_cols=109  Identities=21%  Similarity=0.274  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~--   65 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                 ++.+....+     ...++.+++..+  
T Consensus        32 ei~~iiG~nGsGKSTLlk~L~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~  108 (343)
T PRK11153         32 EIFGVIGASGAGKSTLIRCIN---LLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLE  108 (343)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHH
Confidence            478999999999999999999   66544444321                 111111111     011223333211  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ...........+.+.+...+-..+   -...++.++.|++.+++++...|++ ++||+|+
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i-LlLDEPt  168 (343)
T PRK11153        109 LAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV-LLCDEAT  168 (343)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence             011122122223333332221111   1334667799999999999999998 8899999

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.01  E-value=1.1e-08  Score=79.73  Aligned_cols=34  Identities=18%  Similarity=0.481  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC------CceechhHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYG------LTHLSAGELL   44 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~------~~~i~~~~~~   44 (196)
                      +++++|++||||||+++.|++.+.      +.+++.|+++
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i   40 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII   40 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence            367899999999999999998874      3478888876

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=99.01  E-value=5.7e-09  Score=85.85  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC-CceechhHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG-LTHLSAGEL   43 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~-~~~i~~~~~   43 (196)
                      .++++|+|.|++||||||+++.|+..++ ...+..|+.
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            4578999999999999999999998763 345555544

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.00  E-value=9.9e-10  Score=90.54  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=28.0

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       133 ~~~LSgG~~qrv~la~al~~~p~l-llLDEPt  163 (490)
T PRK10938        133 FKYLSTGETRKTLLCQALMSEPDL-LILDEPF  163 (490)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCE-EEEcCCc
Confidence            556778899999999999999998 8899999

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.00  E-value=1.1e-09  Score=81.38  Aligned_cols=109  Identities=20%  Similarity=0.281  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC-------hhhHHH---------------HHHhhcCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS-------EYGTTI---------------LNTIKEGKI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~---------------~~~l~~~~~   67 (196)
                      -++++.|++|+||||++++|+   |+.+.+.|.+--....+..       ..+..+               -..++.-..
T Consensus        51 ~ivgflGaNGAGKSTtLKmLT---Gll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~  127 (325)
T COG4586          51 EIVGFLGANGAGKSTTLKMLT---GLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYE  127 (325)
T ss_pred             cEEEEEcCCCCcchhhHHHHh---CccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHh
Confidence            478889999999999999999   8887776655211100000       000000               011111122


Q ss_pred             CCHHHHHHH---HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           68 VPSEVTVSL---IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        68 ~~~~~~~~~---i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +++....+.   +-+.++..+.-.|=+..++.++.-+..++.++..+|.+ +|||+|+
T Consensus       128 Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~V-LfLDEpT  184 (325)
T COG4586         128 IPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKV-LFLDEPT  184 (325)
T ss_pred             CCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcE-EEecCCc
Confidence            333333332   22333322111222455667777777888888888887 8999998

>PRK15453 phosphoribulokinase; Provisional

Probab=99.00  E-value=6.9e-09  Score=78.27  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=30.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELL   44 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~   44 (196)
                      .++++|+|+|.|||||||+++.|++.++     ..+++.|.+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            4568999999999999999999998774     4456666554

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.00  E-value=4.5e-10  Score=82.81  Aligned_cols=111  Identities=23%  Similarity=0.335  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCChh-----hHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSEY-----GTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~~-----~~~~~~~l~~~--   65 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+                 .++.+....+.     ...+.+++..+  
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~  106 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLIL---GIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLR  106 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHH
Confidence            478999999999999999999   6544333322                 11111111111     11223332211  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                       ...........+.+.+...+-..+   -...++.++.|++.+++++...|++ ++||+|+.-
T Consensus       107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEPt~~  168 (216)
T TIGR00960       107 IIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL-LLADEPTGN  168 (216)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCc
Confidence             001111112223333332221111   2345777899999999999999999 779999944

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.00  E-value=2.1e-09  Score=82.65  Aligned_cols=109  Identities=22%  Similarity=0.352  Sum_probs=64.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH----------------HHHHHhcCCh------hhHHHHHHhhcCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL----------------LRREIASNSE------YGTTILNTIKEGK-   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~----------------~~~~~~~~~~------~~~~~~~~l~~~~-   66 (196)
                      -+++|.|++||||||++++|+   |....+.|++                .++.+....+      ...++.+.+..+. 
T Consensus        34 e~~~i~G~nGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~  110 (287)
T PRK13637         34 EFVGLIGHTGSGKSTLIQHLN---GLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPI  110 (287)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHH
Confidence            488999999999999999999   6654443322                1111111111      1123344443211 


Q ss_pred             --CCCHHHHHHHHHHHHhcCCCC--cE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 --IVPSEVTVSLIQKEMESSDSK--KF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 --~~~~~~~~~~i~~~l~~~~~~--~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                        ..........+.+.+...+..  .+   -...++.++.|++.+++++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~l-lllDEPt  172 (287)
T PRK13637        111 NLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI-LILDEPT  172 (287)
T ss_pred             HCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence              122332333344444432221  11   1345677899999999999999999 7799999

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.00  E-value=4.6e-09  Score=82.19  Aligned_cols=85  Identities=14%  Similarity=0.226  Sum_probs=50.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE
Q 029287           94 FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGKLYT  170 (196)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  170 (196)
                      ++.++.|++.++.++...|++ +++|+|+.-+.......    ..+-...+.+   ....+.+|+...+..++++..++.
T Consensus       162 LSgG~~QRv~IArAL~~~P~l-lilDEPts~LD~~~~~~----i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~  236 (330)
T PRK09473        162 FSGGMRQRVMIAMALLCRPKL-LIADEPTTALDVTVQAQ----IMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY  236 (330)
T ss_pred             CCHHHHHHHHHHHHHHcCCCE-EEEeCCCccCCHHHHHH----HHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            445699999999999999999 77999993222111111    0000111111   012567777777777777554442


Q ss_pred             ---EeCCCCHhHHHHH
Q 029287          171 ---INAVGTVDEIFEQ  183 (196)
Q Consensus       171 ---I~~~~~~~~v~~~  183 (196)
                         |...++.+++++.
T Consensus       237 ~G~ive~g~~~~i~~~  252 (330)
T PRK09473        237 AGRTMEYGNARDVFYQ  252 (330)
T ss_pred             CCEEEEECCHHHHHhC
Confidence               5566778887653

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.99  E-value=1.6e-09  Score=80.84  Aligned_cols=110  Identities=21%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~--   65 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.                 ++.+...++     ....+.+++..+  
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~  108 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCIN---GLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLE  108 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHH
Confidence            488999999999999999999   65444333221                 111111111     011223332211  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                       ...........+.+.+....-..   .-...++.++.|++.++.++...|++ ++||+|+.
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-llLDEP~~  169 (233)
T cd03258         109 IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV-LLCDEATS  169 (233)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCCC
Confidence             01111111222333333221111   12345677899999999999999998 77999993

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.99  E-value=6.8e-10  Score=87.74  Aligned_cols=109  Identities=23%  Similarity=0.298  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEGK   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~~   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                  ++.+....+     ...++.+++..+.
T Consensus        24 ei~~l~G~nGsGKSTLl~~ia---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~  100 (354)
T TIGR02142        24 GVTAIFGRSGSGKTTLIRLIA---GLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGM  100 (354)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHh
Confidence            488999999999999999999   76554444321                  010111111     1122334443221


Q ss_pred             C-CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 I-VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~-~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      . .........+.+.+...+-..   --...++.++.|++.+++++...|++ ++||+|+
T Consensus       101 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l-llLDEPt  159 (354)
T TIGR02142       101 KRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL-LLMDEPL  159 (354)
T ss_pred             hccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCCC
Confidence            1 111111112233333221111   12344667899999999999999998 8899999

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.99  E-value=1.5e-09  Score=82.20  Aligned_cols=31  Identities=26%  Similarity=0.556  Sum_probs=27.2

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       150 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt  180 (257)
T PRK10619        150 PVHLSGGQQQRVSIARALAMEPEV-LLFDEPT  180 (257)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            445777899999999999999998 7799999

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.99  E-value=4.3e-09  Score=75.64  Aligned_cols=163  Identities=20%  Similarity=0.308  Sum_probs=83.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCce-echhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCH--------H
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH-LSAGELLRREIASNSE--------YGTTILNTIKEGKIVPS--------E   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~-i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~--------~   71 (196)
                      +++|+|+||+||||||+++.|.+.++-.+ ...... .+....+..        ....+.+.+..+..+..        -
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T-TR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT-TRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE-SS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec-ccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence            46788899999999999999998874211 111011 111122111        11223333333332211        0


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-HHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-EEMVNRVLNRNEGRVDDNIDTVRKRLQV  150 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-~~~~~Rl~~r~~~~~~~~~~~~~~~~~~  150 (196)
                      .....+...+..  +...+++.-+   .-...+... ...|- +||++.|. +.+.+|+.+|    ..++.+.+.++...
T Consensus        81 t~~~~i~~~~~~--gk~~il~~~~---~g~~~L~~~-~~~~~-~IfI~~~s~~~l~~~l~~r----~~~~~~~i~~r~~~  149 (183)
T PF00625_consen   81 TSKSAIDKVLEE--GKHCILDVDP---EGVKQLKKA-GFNPI-VIFIKPPSPEVLKRRLRRR----GDESEEEIEERLER  149 (183)
T ss_dssp             EEHHHHHHHHHT--TTEEEEEETH---HHHHHHHHC-TTTEE-EEEEEESSHHHHHHHHHTT----THCHHHHHHHHHHH
T ss_pred             hccchhhHhhhc--CCcEEEEccH---HHHHHHHhc-ccCce-EEEEEccchHHHHHHHhcc----ccccHHHHHHHHHH
Confidence            113445555553  4455665333   222233322 33444 48888765 6666666665    33445556665554


Q ss_pred             HHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          151 FKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      +...    ...+.+ ... +|.+ .++++...++.++|++
T Consensus       150 ~~~~----~~~~~~-fd~-vi~n-~~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  150 AEKE----FEHYNE-FDY-VIVN-DDLEEAVKELKEIIEQ  182 (183)
T ss_dssp             HHHH----HGGGGG-SSE-EEEC-SSHHHHHHHHHHHHHH
T ss_pred             HHHH----HhHhhc-CCE-EEEC-cCHHHHHHHHHHHHHh
Confidence            4433    112211 233 3444 4899999999988865

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.98  E-value=2e-09  Score=92.18  Aligned_cols=109  Identities=18%  Similarity=0.336  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~~~~   71 (196)
                      -.++|+|++||||||+++.|.   |....+.|.+              +++.+...++    +..++++++..+.+.+++
T Consensus       480 e~vaIvG~sGsGKSTLlklL~---gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e  556 (686)
T TIGR03797       480 EFVAIVGPSGSGKSTLLRLLL---GFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLD  556 (686)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHH
Confidence            578999999999999999999   5544444333              2333333222    234578888776554444


Q ss_pred             HHHHHHHH-----HHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           72 VTVSLIQK-----EMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        72 ~~~~~i~~-----~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .....+..     .+.. +. .+..+-+   .++.++.|++++++++..+|++ ++||+|+
T Consensus       557 ~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i-LiLDEpT  616 (686)
T TIGR03797       557 EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI-LLFDEAT  616 (686)
T ss_pred             HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            33322221     1111 11 1223322   3667799999999999999999 7799999

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.98  E-value=1.7e-09  Score=80.06  Aligned_cols=110  Identities=24%  Similarity=0.321  Sum_probs=60.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCCCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGKIV-   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~~~-   68 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.               ++.+...++     ....+.+++...... 
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~  103 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIM---GLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR  103 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc
Confidence            588999999999999999999   65444433221               111111111     111233333221110 


Q ss_pred             -C--HHHHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           69 -P--SEVTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        69 -~--~~~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                       .  .......+.+.+. ......--+..++.++.|++.+++++...|++ ++||+|+.
T Consensus       104 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~  161 (222)
T cd03224         104 RRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL-LLLDEPSE  161 (222)
T ss_pred             CchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE-EEECCCcc
Confidence             0  0111112222221 11111112345777899999999999999998 77999993

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.98  E-value=4.7e-10  Score=82.63  Aligned_cols=111  Identities=19%  Similarity=0.229  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChh-----hHHHHHHhhcCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEY-----GTTILNTIKEGK-   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~-----~~~~~~~l~~~~-   66 (196)
                      -+++|+|++||||||+++.|+   |....+.|.+.                 ++.+....+.     ...+.+.+..+. 
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~  105 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLY---GALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLE  105 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHH
Confidence            488999999999999999999   65443333221                 1111111111     112233322110 


Q ss_pred             --CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           67 --IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        67 --~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                        ..........+.+.+...+-..+   ....++.++.|++.+++++...|++ ++||+|+..
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-llLDEPt~~  167 (214)
T TIGR02673       106 VRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL-LLADEPTGN  167 (214)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE-EEEeCCccc
Confidence              01111112223333332221111   2345777899999999999999998 779999844

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.98  E-value=1.6e-09  Score=81.13  Aligned_cols=109  Identities=21%  Similarity=0.333  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCCh-----hhHHHHHHhhcCC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSE-----YGTTILNTIKEGK--   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~-----~~~~~~~~l~~~~--   66 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.                ++.+....+     ....+.+++..+.  
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  104 (240)
T PRK09493         28 EVVVIIGPSGSGKSTLLRCIN---KLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR  104 (240)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHH
Confidence            488999999999999999999   65544433221                111111111     0112233332110  


Q ss_pred             --CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 --IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 --~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                        ..........+.+.+...+-..   .-...++.++.|++.+++++...|++ ++||+|+
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEP~  164 (240)
T PRK09493        105 VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL-MLFDEPT  164 (240)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence              1111112222333333221111   11345677899999999999999998 7799999

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.98  E-value=1.7e-10  Score=91.51  Aligned_cols=165  Identities=19%  Similarity=0.281  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH----------------------HHhcCCh-----hhHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR----------------------EIASNSE-----YGTTILNTI   62 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~----------------------~~~~~~~-----~~~~~~~~l   62 (196)
                      -+++|+|++||||||++++|+   |....+.|.+...                      .+....+     ...++.+++
T Consensus        51 ei~~I~G~nGsGKSTLlr~L~---Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi  127 (382)
T TIGR03415        51 EICVLMGLSGSGKSSLLRAVN---GLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENV  127 (382)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHH
Confidence            478999999999999999999   6544433322111                      0111111     111233333


Q ss_pred             hcCC---CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCC
Q 029287           63 KEGK---IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGR  136 (196)
Q Consensus        63 ~~~~---~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~  136 (196)
                      ..+.   ..........+.+.++......+   -...++.++.|++.+++++...|++ +++|+|+.-+.......    
T Consensus       128 ~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I-LLlDEPts~LD~~~r~~----  202 (382)
T TIGR03415       128 AFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI-LLMDEPFSALDPLIRTQ----  202 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEECCCccCCHHHHHH----
Confidence            3221   11222222333344443222222   1334666799999999999999999 77999993322222111    


Q ss_pred             CCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          137 VDDNIDTVRK---RLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       137 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                      ..+-...+.+   ....+.+|....+..++++..++.   +...++++++..
T Consensus       203 l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~  254 (382)
T TIGR03415       203 LQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL  254 (382)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence            0000111111   122566677777777777544432   445567777754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.98  E-value=5.7e-10  Score=82.13  Aligned_cols=112  Identities=20%  Similarity=0.337  Sum_probs=64.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------HHHHhcCCh-------hhHHHHHHhhcCCCC-----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------RREIASNSE-------YGTTILNTIKEGKIV-----   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------~~~~~~~~~-------~~~~~~~~l~~~~~~-----   68 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.         ++.+....+       ...++.+++......     
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~  102 (213)
T cd03235          26 EFLAIVGPNGAGKSTLLKAIL---GLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF  102 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHc---CCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccc
Confidence            478999999999999999999   66544444321         121221111       112344444322110     


Q ss_pred             --CHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           69 --PSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        69 --~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                        ........+.+.+...+-..   --+..++.++.|++.++.++...|++ ++||+|+.-+
T Consensus       103 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-lllDEPt~~L  163 (213)
T cd03235         103 RRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL-LLLDEPFAGV  163 (213)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCcccC
Confidence              11112223333333221111   12445777899999999999999999 7799999443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.98  E-value=5.1e-10  Score=83.82  Aligned_cols=110  Identities=21%  Similarity=0.294  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcCCC---C-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEGKI---V-   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~~~---~-   68 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+...            .+....+     ....+.+++..+..   . 
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  105 (239)
T cd03296          29 ELVALLGPSGSGKTTLLRLIA---GLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRS  105 (239)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcccc
Confidence            478999999999999999999   6654444433111            1111000     01123333322110   0 


Q ss_pred             ---CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           69 ---PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        69 ---~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                         ........+.+.+....-.   ..-+..++.++.|++.+++++...|++ ++||+|+.
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEP~~  165 (239)
T cd03296         106 ERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV-LLLDEPFG  165 (239)
T ss_pred             ccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence               1111112223333321111   112345778899999999999999998 77999993

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.98  E-value=2.2e-10  Score=82.15  Aligned_cols=102  Identities=24%  Similarity=0.290  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+..............++..+.        .+.+ +.+.+........
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~---G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~--------~~~q-~l~~~gl~~~~~~   93 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLA---GLLKPSSGEILLDGKDLASLSPKELARKIA--------YVPQ-ALELLGLAHLADR   93 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCcCCHHHHHHHHh--------HHHH-HHHHcCCHhHhcC
Confidence            488999999999999999999   776655555432211000000000110000        0000 2222221111011


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      -...++.++.+++.+++++...|++ +++|+|+..
T Consensus        94 ~~~~LS~G~~qrl~laral~~~p~l-lllDEP~~~  127 (180)
T cd03214          94 PFNELSGGERQRVLLARALAQEPPI-LLLDEPTSH  127 (180)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCccC
Confidence            1345777899999999999999999 779999944

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.98  E-value=3.2e-09  Score=80.13  Aligned_cols=32  Identities=19%  Similarity=0.446  Sum_probs=27.1

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ..++.++.|++.+++++...|++ ++||+|+..
T Consensus       145 ~~LS~G~~qrv~laral~~~p~l-lllDEP~~~  176 (252)
T TIGR03005       145 AQLSGGQQQRVAIARALAMRPKV-MLFDEVTSA  176 (252)
T ss_pred             hhcCHHHHHHHHHHHHHHcCCCE-EEEeCCccc
Confidence            44667799999999999999998 779999933

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.98  E-value=1.6e-09  Score=83.36  Aligned_cols=109  Identities=21%  Similarity=0.270  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCChh------hHHHHHHhhcC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSEY------GTTILNTIKEG   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~~------~~~~~~~l~~~   65 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                  +..+....+.      ...+.+++..+
T Consensus        34 e~~~iiG~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~  110 (287)
T PRK13641         34 SFVALVGHTGSGKSTLMQHFN---ALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG  110 (287)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHH
Confidence            478999999999999999999   66554444221                  1111111111      11233333211


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCCC----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 ---KIVPSEVTVSLIQKEMESSDSK----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 ---~~~~~~~~~~~i~~~l~~~~~~----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                         ...........+.+.+...+-.    ..-+..++.++.|++.+++++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~l-LlLDEPt  173 (287)
T PRK13641        111 PKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEI-LCLDEPA  173 (287)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence               0111122222233333322211    112445777899999999999999998 7899999

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.98  E-value=1.9e-09  Score=82.30  Aligned_cols=109  Identities=21%  Similarity=0.279  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH----------------HHHHHhcCChh------hHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL----------------LRREIASNSEY------GTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~----------------~~~~~~~~~~~------~~~~~~~l~~~--   65 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+                .++.+....+.      ...+.+.+...  
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~  104 (271)
T PRK13638         28 PVTGLVGANGCGKSTLFMNLS---GLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLR  104 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHc---CCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHH
Confidence            478999999999999999999   6544333322                11111111111      01122222111  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ...........+...+...+..   ..-+..++.++.|++.+++++...|++ ++||+|+
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l-llLDEPt  164 (271)
T PRK13638        105 NLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY-LLLDEPT  164 (271)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence             0111111222233333321111   112455777899999999999999999 7799999

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=6.2e-09  Score=80.01  Aligned_cols=109  Identities=19%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH------------------HHHHHhcCChh------hHHHHHHhhcC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL------------------LRREIASNSEY------GTTILNTIKEG   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~------------------~~~~~~~~~~~------~~~~~~~l~~~   65 (196)
                      -+++|.|++||||||++++|+   |....+.|.+                  .++.+....+.      ...+.+++..+
T Consensus        34 e~~~i~G~nGsGKSTLl~~L~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~  110 (286)
T PRK13646         34 KYYAIVGQTGSGKSTLIQNIN---ALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG  110 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhh
Confidence            488999999999999999999   6544333321                  12222222221      12444444322


Q ss_pred             C---CCCHHHHHHHHHHHHhcCCCC----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 K---IVPSEVTVSLIQKEMESSDSK----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 ~---~~~~~~~~~~i~~~l~~~~~~----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .   ..........+.+.+...+..    ..-...++.++.|++.+++++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~i-lllDEPt  173 (286)
T PRK13646        111 PKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDI-IVLDEPT  173 (286)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence            1   122222233333444432221    112455777899999999999999998 7799999

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.97  E-value=1.7e-09  Score=78.88  Aligned_cols=112  Identities=19%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcCCCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEGKIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~~~~~~~   71 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.             ++.+....+     ....+.+.+.........
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  103 (201)
T cd03231          27 EALQVTGPNGSGKTTLLRILA---GLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSD  103 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccH
Confidence            588999999999999999999   65443333221             111111110     011233333221111111


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      .....+.+.+.......-.+..++.++.|++.+++++...|++ ++||+|+..+
T Consensus       104 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-lllDEPt~~L  156 (201)
T cd03231         104 EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL-WILDEPTTAL  156 (201)
T ss_pred             HHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCCC
Confidence            1122222222221111112445777899999999999999998 7799999543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.97  E-value=4.7e-09  Score=78.74  Aligned_cols=109  Identities=23%  Similarity=0.385  Sum_probs=60.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCCC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIVP--   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~~--   69 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              ++.....++    ....+.+++..+....  
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~  106 (241)
T PRK14250         30 AIYTIVGPSGAGKSTLIKLIN---RLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGE  106 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCc
Confidence            478999999999999999999   65444333221              111111111    1123344443221111  


Q ss_pred             HHHHHHHHHHHHhcC-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQKEMESS-DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~-~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .......+.+.+... .....-...++.++.|++.++.++...|++ ++||+|+
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt  159 (241)
T PRK14250        107 KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV-LLLDEPT  159 (241)
T ss_pred             HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            111112222222221 111112445777899999999999999998 7799999

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=1.4e-09  Score=82.74  Aligned_cols=110  Identities=22%  Similarity=0.286  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI---   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~---   67 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++.+....+     ....+.+++..+..   
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  114 (265)
T PRK10575         38 KVTGLIGHNGSGKSTLLKMLG---RHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH  114 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHc---CCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccccc
Confidence            488999999999999999999   65544333221              111111111     11234444432210   


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           68 ----VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        68 ----~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                          .........+...+...+-..   .....++.++.|++.++.++...|++ ++||+|+.
T Consensus       115 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-llLDEPt~  176 (265)
T PRK10575        115 GALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC-LLLDEPTS  176 (265)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence                011111222333333222111   12345777899999999999999999 77999993

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.97  E-value=2.5e-09  Score=76.58  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-----CCceechhHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY-----GLTHLSAGELLR   45 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~-----~~~~i~~~~~~~   45 (196)
                      +|+|.|++||||||+++.|++.+     +...++.+++++
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            57899999999999999999997     345677777775

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=3e-09  Score=85.03  Aligned_cols=109  Identities=22%  Similarity=0.287  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------------HHHhcCCh-----hhHHHHHHhhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------------REIASNSE-----YGTTILNTIKEGK   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------------~~~~~~~~-----~~~~~~~~l~~~~   66 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+..                  +.+....+     ...++.+++..+.
T Consensus        55 ei~~LvG~NGsGKSTLLr~I~---Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~  131 (400)
T PRK10070         55 EIFVIMGLSGSGKSTMVRLLN---RLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGM  131 (400)
T ss_pred             CEEEEECCCCchHHHHHHHHH---cCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHH
Confidence            478999999999999999999   655444433211                  01111111     0112333332211


Q ss_pred             ---CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 ---IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ---~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                         ..........+.+.+...+-..+   -...++.++.|++.+++++...|++ ++||+|+
T Consensus       132 ~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i-LLLDEPt  192 (400)
T PRK10070        132 ELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI-LLMDEAF  192 (400)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence               11112222233334443222221   2344667799999999999999998 7899999

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.97  E-value=6.5e-10  Score=84.06  Aligned_cols=106  Identities=22%  Similarity=0.266  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------HHHHhcCCh-----hhHHHHHHhhcCCCCCHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------RREIASNSE-----YGTTILNTIKEGKIVPSEVTVS   75 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~   75 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.         ++.+....+     ....+.+++..+.....   ..
T Consensus        39 e~~~I~G~NGsGKSTLlk~l~---Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~  112 (257)
T PRK11247         39 QFVAVVGRSGCGKSTLLRLLA---GLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW---RD  112 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchH---HH
Confidence            478999999999999999999   66544444321         111111111     11234444432211001   11


Q ss_pred             HHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           76 LIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        76 ~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+.+.+....-..   .-...++.++.|++.+++++...|++ ++||+|+
T Consensus       113 ~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l-llLDEPt  161 (257)
T PRK11247        113 AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL-LLLDEPL  161 (257)
T ss_pred             HHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            2222333211111   12345777899999999999999999 7799999

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.96  E-value=6e-09  Score=77.57  Aligned_cols=109  Identities=21%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~---   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.               ++.+....+     ....+.+++..+.   
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~  103 (230)
T TIGR03410        27 EVTCVLGRNGVGKTTLLKTLM---GLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL  103 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc
Confidence            488999999999999999999   65443333221               111111111     1112233322110   


Q ss_pred             CCCHHHHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 IVPSEVTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..........+.+.+. ......--+..++.++.|++.+++++...|++ ++||+|+
T Consensus       104 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i-lllDEPt  159 (230)
T TIGR03410       104 PRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL-LLLDEPT  159 (230)
T ss_pred             CcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence            0111111122222221 11100111345777899999999999999998 7799999

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.96  E-value=9.9e-11  Score=80.11  Aligned_cols=109  Identities=22%  Similarity=0.279  Sum_probs=59.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHH---------hhcCCCCCHHH---HHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNT---------IKEGKIVPSEV---TVSLI   77 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------l~~~~~~~~~~---~~~~i   77 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+...............+..         +..+..+.+..   ....+
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~---g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~   88 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALA---GLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEV   88 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHT---TSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHH
T ss_pred             CEEEEEccCCCccccceeeec---cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            478999999999999999999   6554444433111000000000000000         00001011111   22223


Q ss_pred             HHHHhcCCCCcEEE----eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           78 QKEMESSDSKKFLI----DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        78 ~~~l~~~~~~~~ii----d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+.+.........+    ..++.++.+++.++.++...|++ ++||+|+
T Consensus        89 l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l-lllDEPt  136 (137)
T PF00005_consen   89 LKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL-LLLDEPT  136 (137)
T ss_dssp             HHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE-EEEESTT
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence            33333222112234    66777899999999999999999 7799996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.96  E-value=5.5e-09  Score=80.21  Aligned_cols=109  Identities=19%  Similarity=0.394  Sum_probs=64.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH----------------HHHHHhcCCh------hhHHHHHHhhcCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL----------------LRREIASNSE------YGTTILNTIKEGK-   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~----------------~~~~~~~~~~------~~~~~~~~l~~~~-   66 (196)
                      -+++|.|++||||||++++|+   |....+.|++                .++.+....+      ...++.+++..+. 
T Consensus        33 e~~~i~G~nGaGKSTLl~~i~---Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~  109 (283)
T PRK13636         33 EVTAILGGNGAGKSTLFQNLN---GILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAV  109 (283)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHH
Confidence            488999999999999999999   6544333321                1111111111      1123444443211 


Q ss_pred             --CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 --IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 --~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                        ..+.......+...+...+-.   ..-...++.++.|++.+++++...|++ ++||+|+
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l-LilDEPt  169 (283)
T PRK13636        110 NLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV-LVLDEPT  169 (283)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence              112222223333443322211   123556778899999999999999999 7799999

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.96  E-value=1.3e-09  Score=78.88  Aligned_cols=113  Identities=18%  Similarity=0.274  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCChh------hHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSEY------GTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~~------~~~~~~~l~~~--   65 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                ++.+....+.      ...+.+++..+  
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~   95 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLN---GLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPL   95 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHH
Confidence            478999999999999999999   65544433221                1111111111      11223333211  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHH
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV  126 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~  126 (196)
                       ...........+.+.+...+-..   .-...++.++.|++.+++++...|++ ++||+|+..+.
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~LD  159 (190)
T TIGR01166        96 NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV-LLLDEPTAGLD  159 (190)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccCC
Confidence             01111211222233333211111   12345667799999999999999998 77999995443

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.96  E-value=6e-09  Score=79.25  Aligned_cols=32  Identities=13%  Similarity=0.280  Sum_probs=27.6

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...++.++.|++.+++++...|++ ++||+|+.
T Consensus       148 ~~~LSgGe~qrv~laral~~~p~i-llLDEPt~  179 (265)
T TIGR02769       148 PRQLSGGQLQRINIARALAVKPKL-IVLDEAVS  179 (265)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence            445777899999999999999998 77999993

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.96  E-value=1.3e-09  Score=80.25  Aligned_cols=111  Identities=23%  Similarity=0.289  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCChh-----hHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSEY-----GTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~~-----~~~~~~~l~~~--   65 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+                 .++.+....+.     ...+.+++...  
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~  104 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIY---KEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALE  104 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHH
Confidence            478999999999999999999   6544333322                 11111111110     01222222211  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                       .........+.+.+.+...+-..+   ....++.++.|++.+++++...|++ ++||+|+..
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~  166 (214)
T cd03292         105 VTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI-LIADEPTGN  166 (214)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE-EEEeCCCCc
Confidence             001111112223333332221111   1345677799999999999999998 779999944

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.96  E-value=2.8e-09  Score=83.09  Aligned_cols=30  Identities=33%  Similarity=0.645  Sum_probs=26.6

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..++.++.|++.+++++...|++ ++||+|+
T Consensus       175 ~~LSgGqkqRvaiAraL~~~p~i-LLLDEPt  204 (320)
T PRK13631        175 FGLSGGQKRRVAIAGILAIQPEI-LIFDEPT  204 (320)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence            34677899999999999999999 7799999

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.96  E-value=8.5e-10  Score=81.20  Aligned_cols=111  Identities=26%  Similarity=0.340  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSEY-----GTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~~-----~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.            ++.+....+.     ...+.+++..+.   ...
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  103 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIA---GLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP  103 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCC
Confidence            478999999999999999999   65444433321            1111111110     112233332110   011


Q ss_pred             HHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           70 SEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .......+.+.+...+-..   .....++.++.|++.+++++...|++ ++||+|+.-
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~-lllDEPt~~  160 (213)
T cd03259         104 KAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL-LLLDEPLSA  160 (213)
T ss_pred             HHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCccc
Confidence            1112222333333222111   12345777899999999999999998 779999943

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02772 guanylate kinase

Probab=98.95  E-value=2.5e-08  Score=78.53  Aligned_cols=163  Identities=17%  Similarity=0.266  Sum_probs=85.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHH-------
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSE-------   71 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~-------   71 (196)
                      ..++++|.||+||||||+++.|.+.+.. ......... +....+..        ....+...+..+..+...       
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTT-R~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~Y  212 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTT-RAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLY  212 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccC-CCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccc
Confidence            3468899999999999999999887531 111111111 11111111        112244444444443321       


Q ss_pred             -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecC--hHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029287           72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCP--EEEMVNRVLNRNEGRVDDNIDTVRKRL  148 (196)
Q Consensus        72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~--~~~~~~Rl~~r~~~~~~~~~~~~~~~~  148 (196)
                       ...+.+...+..  +..+|++==+.+..+   +....   ++.++++.+|  .+.+.+|+..|    ...+.+.+++|+
T Consensus       213 GTsk~~V~~vl~~--Gk~vILdLD~qGar~---Lr~~~---l~~v~IFI~PPSlEeLe~RL~~R----GteseE~I~kRL  280 (398)
T PLN02772        213 GTSIEAVEVVTDS--GKRCILDIDVQGARS---VRASS---LEAIFIFICPPSMEELEKRLRAR----GTETEEQIQKRL  280 (398)
T ss_pred             cccHHHHHHHHHh--CCcEEEeCCHHHHHH---HHHhc---CCeEEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHH
Confidence             123444455453  455566633322222   22221   2333444444  58999999888    344677888888


Q ss_pred             HHHHhchHhHHHHH--HhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          149 QVFKALNLPVINYY--ARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       149 ~~~~~~~~~~~~~~--~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      ..+...    +...  ..... ++|.++ ++++..+++.+++.
T Consensus       281 ~~A~~E----i~~~~~~~~fD-~vIvND-dLe~A~~~L~~iL~  317 (398)
T PLN02772        281 RNAEAE----LEQGKSSGIFD-HILYND-NLEECYKNLKKLLG  317 (398)
T ss_pred             HHHHHH----HhhccccCCCC-EEEECC-CHHHHHHHHHHHHh
Confidence            776432    1111  11112 234444 88988888887764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=1.1e-09  Score=81.77  Aligned_cols=110  Identities=21%  Similarity=0.209  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCCC---CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGKI---VP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~~---~~   69 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+..            +......+     ....+.+++..+..   ..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~  102 (232)
T PRK10771         26 ERVAILGPSGAGKSTLLNLIA---GFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL  102 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCC
Confidence            488999999999999999999   665544443211            11111111     11233444432210   00


Q ss_pred             HHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           70 SEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      .......+.+.+...+-.   ......++.++.|++.+++++...|++ ++||+|+.
T Consensus       103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-llLDEP~~  158 (232)
T PRK10771        103 NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI-LLLDEPFS  158 (232)
T ss_pred             CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence            111122233333322111   112345777899999999999999999 77999993

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=2.5e-09  Score=80.27  Aligned_cols=109  Identities=22%  Similarity=0.269  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------------HHHHhcCChh-----hHHHHHHhhc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------------RREIASNSEY-----GTTILNTIKE   64 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------------~~~~~~~~~~-----~~~~~~~l~~   64 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                    ++.+....+.     ...+.+++..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~  105 (242)
T PRK11124         29 ETLVLLGPSGAGKSSLLRVLN---LLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIE  105 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHH
Confidence            478999999999999999999   66544443221                    1111111110     1122333321


Q ss_pred             C----CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           65 G----KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        65 ~----~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .    ...........+.+.+...+-..   -....++.++.|++.+++++...|++ ++||+|+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lilDEPt  169 (242)
T PRK11124        106 APCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV-LLFDEPT  169 (242)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            0    00111111222333333221111   12345777899999999999999998 7799999

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.95  E-value=1.5e-09  Score=79.82  Aligned_cols=112  Identities=24%  Similarity=0.365  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChh------hHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEY------GTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~------~~~~~~~l~~~~---   66 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+              .++.+....+.      ...+.+++....   
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~  104 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLN---GLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL  104 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc
Confidence            488999999999999999999   6544333322              11111111111      112233332110   


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ..........+.+.+...+-..   --...++.++.|++.+++++...|++ ++||+|+.-+
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEPt~~L  165 (211)
T cd03225         105 GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI-LLLDEPTAGL  165 (211)
T ss_pred             CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccC
Confidence            0111111122223333211111   11345777899999999999999998 7799999543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.95  E-value=1.8e-09  Score=80.28  Aligned_cols=32  Identities=25%  Similarity=0.582  Sum_probs=27.7

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ..++.++.|++.++.++...|++ ++||+|+..
T Consensus       140 ~~LSgG~~qrv~la~al~~~p~l-lllDEPt~~  171 (227)
T cd03260         140 LGLSGGQQQRLCLARALANEPEV-LLLDEPTSA  171 (227)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCCcc
Confidence            56777899999999999999999 779999943

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.94  E-value=9e-10  Score=84.18  Aligned_cols=109  Identities=18%  Similarity=0.315  Sum_probs=61.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH----------------HHHHHhcCChh------hHHHHHHhhcCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL----------------LRREIASNSEY------GTTILNTIKEGK-   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~----------------~~~~~~~~~~~------~~~~~~~l~~~~-   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+                .++.+....+.      ...+.+.+..+. 
T Consensus        29 e~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~  105 (275)
T PRK13639         29 EMVALLGPNGAGKSTLFLHFN---GILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPL  105 (275)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHH
Confidence            388999999999999999999   6544333322                11111111111      012233332110 


Q ss_pred             --CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 --IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 --~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                        ..........+.+.++..+-..   -....++.++.|+..++.++...|++ ++||+|+
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l-lllDEPt  165 (275)
T PRK13639        106 NLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI-IVLDEPT  165 (275)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence              1111111222333333222111   12445667799999999999999999 7799999

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.94  E-value=2.7e-09  Score=81.32  Aligned_cols=110  Identities=24%  Similarity=0.304  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------------HHHhcCCh-----hhHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------------REIASNSE-----YGTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------------~~~~~~~~-----~~~~~~~~l~~~-   65 (196)
                      -+++|.|++||||||++++|+   |....+.|.+..                  +.+...++     ....+.+++..+ 
T Consensus        51 e~~~l~G~nGsGKSTLl~~L~---Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  127 (269)
T cd03294          51 EIFVIMGLSGSGKSTLLRCIN---RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGL  127 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHH
Confidence            488999999999999999999   655444332210                  00111010     011223332211 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           66 --KIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        66 --~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                        ...........+.+.+...+-.   ..-...++.++.|++.++.++...|++ ++||+|+.
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i-llLDEPt~  189 (269)
T cd03294         128 EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI-LLMDEAFS  189 (269)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCCc
Confidence              0011111122233333322111   112445777899999999999999999 77999993

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.94  E-value=6e-09  Score=76.39  Aligned_cols=109  Identities=26%  Similarity=0.294  Sum_probs=66.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH----------HHHhcCChhh-----HHHH---HHhhcCCCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR----------REIASNSEYG-----TTIL---NTIKEGKIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~----------~~~~~~~~~~-----~~~~---~~l~~~~~~~~~   71 (196)
                      .+.++.|++|+||||..+++.   |+.-.+.|.+.+          +.+...++-.     .++.   .++..-.-.+..
T Consensus        29 ~i~GllG~NGAGKTTtfRmIL---glle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~  105 (300)
T COG4152          29 EIFGLLGPNGAGKTTTFRMIL---GLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKA  105 (300)
T ss_pred             eEEEeecCCCCCccchHHHHh---ccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHH
Confidence            688999999999999999999   666555554432          2222222110     0011   122211222333


Q ss_pred             HHHHHHHHHH---hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           72 VTVSLIQKEM---ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        72 ~~~~~i~~~l---~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .....+...+   +......--++.++.+..|...|..++...|++ +.||+|+
T Consensus       106 e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL-lILDEPF  158 (300)
T COG4152         106 EIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL-LILDEPF  158 (300)
T ss_pred             HHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE-EEecCCc
Confidence            3333333333   333343444777888889999888888889999 6699999

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.94  E-value=3.1e-09  Score=74.59  Aligned_cols=115  Identities=22%  Similarity=0.317  Sum_probs=66.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH------hcCChhhH-----------HHHHHhhcCCC----C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI------ASNSEYGT-----------TILNTIKEGKI----V   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~------~~~~~~~~-----------~~~~~l~~~~~----~   68 (196)
                      -+++|.|||||||||+++.++   |+.....|.+.-...      +...+...           ++.+++.-|..    .
T Consensus        26 e~vAi~GpSGaGKSTLLnLIA---GF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL  102 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIA---GFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL  102 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHH---hccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc
Confidence            488999999999999999999   877766665521110      01111111           12333333211    1


Q ss_pred             CHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHh
Q 029287           69 PSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL  130 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~  130 (196)
                      . ....+.+...+...+-.++ .+++|    .++.|++++++.+-..-.+ ++||+|+..+.--++
T Consensus       103 ~-a~~r~~v~~aa~~vGl~~~-~~RLP~~LSGGqRQRvALARclvR~~Pi-lLLDEPFsALdP~LR  165 (231)
T COG3840         103 N-AEQREKVEAAAAQVGLAGF-LKRLPGELSGGQRQRVALARCLVREQPI-LLLDEPFSALDPALR  165 (231)
T ss_pred             C-HHHHHHHHHHHHHhChhhH-hhhCccccCchHHHHHHHHHHHhccCCe-EEecCchhhcCHHHH
Confidence            1 1222334444443333333 44444    5689999999987644444 889999966555443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.94  E-value=3e-09  Score=78.69  Aligned_cols=110  Identities=23%  Similarity=0.304  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------HHHhcCCh-----hhHHHHHHhhcC---CCCCHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------REIASNSE-----YGTTILNTIKEG---KIVPSEV   72 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------~~~~~~~~-----~~~~~~~~l~~~---~~~~~~~   72 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+..         +.+....+     ....+.+++..+   .......
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  107 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIA---GLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAE  107 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHH
Confidence            478999999999999999999   665444443311         11111111     001222322211   0111111


Q ss_pred             HHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           73 TVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        73 ~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ....+.+.+...+-.   .-....++.++.|++.+++++...|++ ++||+|+.
T Consensus       108 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l-llLDEPt~  160 (220)
T cd03293         108 ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV-LLLDEPFS  160 (220)
T ss_pred             HHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEECCCCC
Confidence            122233333322111   112456778899999999999999998 77999994

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.94  E-value=2.7e-09  Score=81.69  Aligned_cols=109  Identities=20%  Similarity=0.316  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh------hhHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE------YGTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~------~~~~~~~~l~~~~---   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++.+....+      ...++.+++..+.   
T Consensus        31 e~~~i~G~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~  107 (277)
T PRK13652         31 SRIAVIGPNGAGKSTLFRHFN---GILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL  107 (277)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc
Confidence            478999999999999999999   65444433221              111111111      1112333332111   


Q ss_pred             CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..........+.+.+...+..   .-....++.++.+++.++.++...|++ ++||+|+
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l-lilDEPt  165 (277)
T PRK13652        108 GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV-LVLDEPT  165 (277)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            112222222233333322211   112456778899999999999999998 7799999

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.93  E-value=1e-08  Score=76.32  Aligned_cols=32  Identities=19%  Similarity=0.129  Sum_probs=27.5

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      +..++.++.|++.+++++...|++ ++||+|+.
T Consensus       123 ~~~LS~G~~qrv~laral~~~p~v-llLDEPt~  154 (230)
T TIGR02770       123 PFQLSGGMLQRVMIALALLLEPPF-LIADEPTT  154 (230)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence            345777899999999999999998 77999993

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.93  E-value=2.9e-10  Score=81.02  Aligned_cols=75  Identities=17%  Similarity=0.192  Sum_probs=54.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.....    ..                                 .+
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~----~i---------------------------------~~   65 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILA---GQLIPNGDNDEWDGI----TP---------------------------------VY   65 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHH---cCCCCCCcEEEECCE----EE---------------------------------EE
Confidence            488999999999999999999   876666655432110    00                                 00


Q ss_pred             EEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           90 LID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        90 iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      +..  .++.++.|++.+++++...|++ ++||+|+..+
T Consensus        66 ~~q~~~LSgGq~qrv~laral~~~p~l-llLDEPts~L  102 (177)
T cd03222          66 KPQYIDLSGGELQRVAIAAALLRNATF-YLFDEPSAYL  102 (177)
T ss_pred             EcccCCCCHHHHHHHHHHHHHhcCCCE-EEEECCcccC
Confidence            000  0777899999999999999998 7799999433

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.93  E-value=1.6e-09  Score=81.30  Aligned_cols=109  Identities=22%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCC---C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGK---I   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~---~   67 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              +..+...++     ...++.+++....   .
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~  104 (242)
T cd03295          28 EFLVLIGPSGSGKTTTMKMIN---RLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK  104 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC
Confidence            478999999999999999999   65444433221              111111111     0112333332110   0


Q ss_pred             CCHHHHHHHHHHHHhcCCCC-----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           68 VPSEVTVSLIQKEMESSDSK-----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        68 ~~~~~~~~~i~~~l~~~~~~-----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .........+.+.+...+-.     .--...++.++.|++.+++++...|++ ++||+|+
T Consensus       105 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt  163 (242)
T cd03295         105 WPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL-LLMDEPF  163 (242)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence            11111112223333321111     112344677899999999999999998 7899999

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.93  E-value=5.5e-10  Score=79.43  Aligned_cols=98  Identities=20%  Similarity=0.253  Sum_probs=55.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+...............+..+..  ...+.....  ....+     . 
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~--~~~~~~~~~--~t~~e-----~-   95 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLL---RLYDPTSGEILIDGVDLRDLDLESLRKNIAY--VPQDPFLFS--GTIRE-----N-   95 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHH---cCCCCCCCEEEECCEEhhhcCHHHHHhhEEE--EcCCchhcc--chHHH-----H-
Confidence            478999999999999999999   7665555544221100000000011111100  000000000  00000     0 


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      +   ++.++.+++.+++++...|++ ++||+|+..
T Consensus        96 l---LS~G~~~rl~la~al~~~p~l-lllDEP~~g  126 (171)
T cd03228          96 I---LSGGQRQRIAIARALLRDPPI-LILDEATSA  126 (171)
T ss_pred             h---hCHHHHHHHHHHHHHhcCCCE-EEEECCCcC
Confidence            0   777899999999999999998 789999943

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.93  E-value=4.4e-07  Score=73.04  Aligned_cols=41  Identities=20%  Similarity=0.387  Sum_probs=33.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE   47 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~   47 (196)
                      +.|++|++.|++||||||++..|+..+|+.++-..|.+++.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~  293 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREV  293 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHH
Confidence            45899999999999999999999999999855444555543

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.93  E-value=2.4e-08  Score=72.76  Aligned_cols=116  Identities=20%  Similarity=0.364  Sum_probs=61.0

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH--------HHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS--------EVTV   74 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~   74 (196)
                      ...|..+++.|+|||||||++..+.+.+   ++..++.|++....     +....+...   +.....        ....
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~~---~~~~~~~~~~~~a~~~~~   83 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLKA---DPDEASELTQKEASRLAE   83 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHHH---HCCCTHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhhh---hhhhhHHHHHHHHHHHHH
Confidence            4678899999999999999999999987   67788887653211     111111111   111110        1122


Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCHHHHH-HHHH--HhCCCCcEEEEeecChHHHHHHHhhc
Q 029287           75 SLIQKEMESSDSKKFLIDGFPRSEENRA-AFER--IMGAEPDIVLFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        75 ~~i~~~l~~~~~~~~iid~~~~~~~~~~-~~~~--~~~~~p~~~i~ld~~~~~~~~Rl~~r  132 (196)
                      ..+...+.  ....+++|+-........ .+..  ..+....+ +++.+|++....|..+|
T Consensus        84 ~~~~~a~~--~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l-~~v~~~~e~s~~rv~~R  141 (199)
T PF06414_consen   84 KLIEYAIE--NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVEL-YYVAVPPELSIERVRQR  141 (199)
T ss_dssp             HHHHHHHH--CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEE-EEE---HHHHHHHHHHH
T ss_pred             HHHHHHHH--cCCCEEEecCCCChhHHHHHHHHHHcCCceEEE-EEEECCHHHHHHHHHHH
Confidence            33333344  345678897665533333 2222  23444454 88999999999999988

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.93  E-value=4.5e-09  Score=80.96  Aligned_cols=109  Identities=22%  Similarity=0.303  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH------------------HHHHHhcCCh------hhHHHHHHhhcC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL------------------LRREIASNSE------YGTTILNTIKEG   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~------------------~~~~~~~~~~------~~~~~~~~l~~~   65 (196)
                      -+++|.|++||||||+++.|.   |....+.|++                  .++.+....+      ...++.+.+..+
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~  110 (290)
T PRK13634         34 SYVAIIGHTGSGKSTLLQHLN---GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFG  110 (290)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHH
Confidence            488999999999999999999   6544433322                  1111111111      112344444322


Q ss_pred             C---CCCHHHHHHHHHHHHhcCCCC-c---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 K---IVPSEVTVSLIQKEMESSDSK-K---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 ~---~~~~~~~~~~i~~~l~~~~~~-~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .   ..........+.+.+...+-. .   .-...++.++.|++.++.++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~l-lllDEPt  173 (290)
T PRK13634        111 PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEV-LVLDEPT  173 (290)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence            1   112222222333333322221 1   12445667799999999999999999 7799999

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=5.5e-09  Score=84.99  Aligned_cols=109  Identities=21%  Similarity=0.367  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~   70 (196)
                      ..++|.|+|||||||+.+.|+   |......|++              +++.+...++    ...++++++.-+... .+
T Consensus       348 ~~talvG~SGaGKSTLl~lL~---G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~  424 (559)
T COG4988         348 QLTALVGASGAGKSTLLNLLL---GFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASD  424 (559)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCH
Confidence            588999999999999999999   6554443333              3344443333    234467777665553 33


Q ss_pred             HHHHHHH-----HHHHhcCCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLI-----QKEMESSDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i-----~~~l~~~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +...+.+     .+.+...++ +..|-+   +.+.++.||+++++++..++++ +++|+|+
T Consensus       425 e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l-~llDEpT  484 (559)
T COG4988         425 EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL-LLLDEPT  484 (559)
T ss_pred             HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE-EEecCCc
Confidence            3333222     222222112 333444   3667899999999999988888 7799998

>PLN03232 ABC transporter C family member; Provisional

Probab=98.92  E-value=2.6e-09  Score=97.91  Aligned_cols=112  Identities=14%  Similarity=0.183  Sum_probs=70.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIVPSEVTV   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~   74 (196)
                      -.++|+|++||||||+++.|.+.+    |-..++.-++       +|+.+...++    +..++++++..+....++.+.
T Consensus      1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~ 1342 (1495)
T PLN03232       1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW 1342 (1495)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHH
Confidence            488999999999999999999554    2222222111       3444443333    233578888765555555443


Q ss_pred             HHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           75 SLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        75 ~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+..     .+.. . +.+..+-+   .++.+++|++.+++++..+|.+ ++||+++
T Consensus      1343 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I-LILDEAT 1399 (1495)
T PLN03232       1343 EALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI-LVLDEAT 1399 (1495)
T ss_pred             HHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence            33222     1111 1 12333333   3777899999999999999998 7799988

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.92  E-value=5.7e-09  Score=79.39  Aligned_cols=110  Identities=18%  Similarity=0.291  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI---   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~---   67 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              +..+...++     ....+.+++..+..   
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~  110 (265)
T PRK10253         34 HFTAIIGPNGCGKSTLLRTLS---RLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQ  110 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHc---CCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccc
Confidence            478999999999999999999   66544433221              111111111     11233444432110   


Q ss_pred             --C--CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           68 --V--PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        68 --~--~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                        .  ........+.+.+...+-.   .--+..++.++.|++.+++++...|++ ++||+|+.
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l-lllDEPt~  172 (265)
T PRK10253        111 PLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI-MLLDEPTT  172 (265)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE-EEEeCccc
Confidence              0  0111112223333321111   112455778899999999999999999 77999993

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.92  E-value=1e-09  Score=80.26  Aligned_cols=112  Identities=15%  Similarity=0.214  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcCCCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEGKIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~~~~~~~   71 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.             ++......+     ....+.+++.........
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~  104 (204)
T PRK13538         28 ELVQIEGPNGAGKTSLLRILA---GLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP  104 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc
Confidence            488999999999999999999   65444443321             111111000     001222222211100000


Q ss_pred             HHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           72 VTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      .....+.+.+....-.   ..-+..++.++.|++.++.++...|++ +++|+|+..+
T Consensus       105 ~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt~~L  160 (204)
T PRK13538        105 GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL-WILDEPFTAI  160 (204)
T ss_pred             cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE-EEEeCCCccC
Confidence            0111222233321111   112445777899999999999999999 7799998443

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.92  E-value=4.9e-10  Score=79.84  Aligned_cols=96  Identities=19%  Similarity=0.272  Sum_probs=55.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh---cCCCCCHHHHHHHHHHHHhcCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK---EGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+...............+..+.   ....+....+.+    .+     
T Consensus        29 e~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~----~l-----   96 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAE----NI-----   96 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHH---hccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHH----HC-----
Confidence            478999999999999999999   765555554432110000000001111110   000000000000    00     


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           87 KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                             ++.++.|++.+++++...|++ ++||+|+.-+
T Consensus        97 -------LS~G~~qrv~la~al~~~p~~-lllDEPt~~L  127 (173)
T cd03246          97 -------LSGGQRQRLGLARALYGNPRI-LVLDEPNSHL  127 (173)
T ss_pred             -------cCHHHHHHHHHHHHHhcCCCE-EEEECCcccc
Confidence                   777899999999999999998 7799999443

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.92  E-value=2e-09  Score=98.20  Aligned_cols=112  Identities=25%  Similarity=0.358  Sum_probs=69.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc---------------------------------------------------ee
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT---------------------------------------------------HL   38 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~---------------------------------------------------~i   38 (196)
                      ..++|+|++||||||++++|...|...                                                   +.
T Consensus      1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 (1466)
T PTZ00265       1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFK 1274 (1466)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            588999999999999999999776531                                                   00


Q ss_pred             chhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCHHHHHHHHH-----HHHhc-CCC-CcEEEe
Q 029287           39 SAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPSEVTVSLIQ-----KEMES-SDS-KKFLID   92 (196)
Q Consensus        39 ~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~~~i~-----~~l~~-~~~-~~~iid   92 (196)
                      +.|.+              +|+.+...++    +..++++++..|.. ..++.+...+.     +.+.. +.+ +..|-+
T Consensus      1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe 1354 (1466)
T PTZ00265       1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGP 1354 (1466)
T ss_pred             CCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCC
Confidence            11211              3444443333    34557888887744 34443322221     11111 111 333322


Q ss_pred             ---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           93 ---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        93 ---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                         .++.+++||+++++++...|.+ ++||+++
T Consensus      1355 ~G~~LSGGQkQRIaIARALlr~p~I-LLLDEaT 1386 (1466)
T PTZ00265       1355 YGKSLSGGQKQRIAIARALLREPKI-LLLDEAT 1386 (1466)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence               3666799999999999999998 7799998

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.92  E-value=5.7e-09  Score=80.34  Aligned_cols=109  Identities=22%  Similarity=0.253  Sum_probs=61.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------------HHHHhcCCh------hhHHHHHHhhc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------------RREIASNSE------YGTTILNTIKE   64 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------------~~~~~~~~~------~~~~~~~~l~~   64 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                   ++.+....+      ....+.+++..
T Consensus        38 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~  114 (289)
T PRK13645         38 KVTCVIGTTGSGKSTMIQLTN---GLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAF  114 (289)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHH
Confidence            478999999999999999999   65443333221                   111111111      11133443322


Q ss_pred             CC---CCCHHHHHHHHHHHHhcCCC----CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           65 GK---IVPSEVTVSLIQKEMESSDS----KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        65 ~~---~~~~~~~~~~i~~~l~~~~~----~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.   ..........+...+...+-    ..--+..++.++.|++.+++++...|++ ++||+|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l-LlLDEPt  178 (289)
T PRK13645        115 GPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNT-LVLDEPT  178 (289)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCc
Confidence            11   11111111222223322111    1112445777899999999999999998 7899999

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.1e-09  Score=77.08  Aligned_cols=111  Identities=16%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChh--hHHHHHHhhcCCCCCHH----------------H
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEY--GTTILNTIKEGKIVPSE----------------V   72 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~----------------~   72 (196)
                      .+.|+||+||||||++++|+   |+...+.|++..+........  .....-++.+..-+..+                .
T Consensus        30 ~~~i~G~NG~GKTtLLRila---GLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~  106 (209)
T COG4133          30 ALQITGPNGAGKTTLLRILA---GLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG  106 (209)
T ss_pred             EEEEECCCCCcHHHHHHHHH---cccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC
Confidence            45679999999999999999   998888888765532221111  11222223221111100                0


Q ss_pred             HHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           73 TVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        73 ~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ....+.+++...+-   ...-+..++.+++.++++++.+....++ ++||+|+.-+
T Consensus       107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL-WiLDEP~taL  161 (209)
T COG4133         107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL-WILDEPFTAL  161 (209)
T ss_pred             chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc-eeecCccccc
Confidence            01223333433222   2223445666788899999998878888 8899998543

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.92  E-value=3.1e-10  Score=80.63  Aligned_cols=157  Identities=20%  Similarity=0.299  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChhhHH-----HHHHhhc----C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEYGTT-----ILNTIKE----G   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~~~~-----~~~~l~~----~   65 (196)
                      =++++.||+|+||||.-.++.   |+...+.|.+.               +-.+...++...-     ..+++..    .
T Consensus        31 EiVGLLGPNGAGKTT~Fymi~---Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~  107 (243)
T COG1137          31 EIVGLLGPNGAGKTTTFYMIV---GLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIR  107 (243)
T ss_pred             cEEEEECCCCCCceeEEEEEE---EEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhh
Confidence            489999999999999877766   77666665442               1122222221111     1222211    1


Q ss_pred             CCCCH----HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-----------HHHHHHHh
Q 029287           66 KIVPS----EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-----------EEMVNRVL  130 (196)
Q Consensus        66 ~~~~~----~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-----------~~~~~Rl~  130 (196)
                      .....    ....+.+.+.+.......--...++.++.-+..+++++...|.+ ++||+|+           +.++..+.
T Consensus       108 ~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f-iLLDEPFAGVDPiaV~dIq~iI~~L~  186 (243)
T COG1137         108 EKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF-ILLDEPFAGVDPIAVIDIQRIIKHLK  186 (243)
T ss_pred             hcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE-EEecCCccCCCchhHHHHHHHHHHHH
Confidence            10111    11122233333322111112334667788999999999999999 7799999           44555555


Q ss_pred             hccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          131 NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       131 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .|.       .-.      ..-.|+...-..+++++.++.   |-+.++++++.+.
T Consensus       187 ~rg-------iGv------LITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n  229 (243)
T COG1137         187 DRG-------IGV------LITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN  229 (243)
T ss_pred             hCC-------ceE------EEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence            552       111      122334433444566655544   6688999998743

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.92  E-value=1.8e-09  Score=79.31  Aligned_cols=111  Identities=22%  Similarity=0.282  Sum_probs=63.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCCh-----hhHHHHHHhhcCCC--CC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSE-----YGTTILNTIKEGKI--VP-   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~-----~~~~~~~~l~~~~~--~~-   69 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.            ++.+....+     ....+.+++.....  .. 
T Consensus        25 e~~~l~G~nGsGKSTLl~~l~---gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~  101 (211)
T cd03298          25 EITAIVGPSGSGKSTLLNLIA---GFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKL  101 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCc
Confidence            488999999999999999999   65544444321            111111111     12234444432211  00 


Q ss_pred             HHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           70 SEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .......+.+.+...+-.   .-....++.++.|++.+++++...|++ ++||+|+..
T Consensus       102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l-lllDEP~~~  158 (211)
T cd03298         102 TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV-LLLDEPFAA  158 (211)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCccc
Confidence            111112233333321111   112456778899999999999999998 779999943

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.92  E-value=5e-09  Score=90.02  Aligned_cols=109  Identities=21%  Similarity=0.321  Sum_probs=68.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCC--CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGK--IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~--~~~   69 (196)
                      -.++|.|++||||||+++.|...|   ..+.|.+              +++.+...++    +..++++++..+.  ..+
T Consensus       501 ~~vaIvG~SGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~  577 (708)
T TIGR01193       501 SKTTIVGMSGSGKSTLAKLLVGFF---QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVS  577 (708)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC---CCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCC
Confidence            478999999999999999999444   3332222              2333333322    3446788887652  234


Q ss_pred             HHHHHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ++...+.+.     +.+.. .. .+..+-+   .++.++.|++.+++++..+|++ ++||+|+
T Consensus       578 ~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i-liLDE~T  639 (708)
T TIGR01193       578 QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV-LILDEST  639 (708)
T ss_pred             HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE-EEEeCcc
Confidence            443332222     11211 11 2333333   3667899999999999999999 7799999

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.92  E-value=2.2e-09  Score=81.36  Aligned_cols=110  Identities=20%  Similarity=0.308  Sum_probs=60.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI---   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~---   67 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++......+     ....+.+++..+..   
T Consensus        29 e~~~i~G~nGsGKSTLl~~i~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~  105 (258)
T PRK13548         29 EVVAILGPNGAGKSTLLRALS---GELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG  105 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC
Confidence            478999999999999999999   65544433221              111111111     11123444332111   


Q ss_pred             CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhC------CCCcEEEEeecChH
Q 029287           68 VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMG------AEPDIVLFFDCPEE  123 (196)
Q Consensus        68 ~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~------~~p~~~i~ld~~~~  123 (196)
                      .........+...+...+-.   .-.+..++.++.|++.++.++.      ..|++ ++||+|+.
T Consensus       106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l-llLDEPt~  169 (258)
T PRK13548        106 LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW-LLLDEPTS  169 (258)
T ss_pred             CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE-EEEeCCcc
Confidence            11111112223333321111   1124457778999999999988      48888 78999993

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.92  E-value=3.7e-09  Score=79.92  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=27.1

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.++.++...|++ ++||+|+
T Consensus       151 ~~~LS~G~~qrv~la~al~~~p~l-lllDEPt  181 (255)
T PRK11300        151 AGNLAYGQQRRLEIARCMVTQPEI-LMLDEPA  181 (255)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            344777899999999999999999 7799999

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.92  E-value=7.2e-09  Score=78.99  Aligned_cols=31  Identities=32%  Similarity=0.537  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       141 ~~~LSgGq~qrv~laral~~~p~l-llLDEPt  171 (269)
T PRK11831        141 PSELSGGMARRAALARAIALEPDL-IMFDEPF  171 (269)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            345677899999999999999998 7799999

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=8.6e-09  Score=83.20  Aligned_cols=112  Identities=22%  Similarity=0.330  Sum_probs=69.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHH-------HHHHHhcCChhh----HHHHHHhhcCCCC-CHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL-------LRREIASNSEYG----TTILNTIKEGKIV-PSEVTV   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~-------~~~~~~~~~~~~----~~~~~~l~~~~~~-~~~~~~   74 (196)
                      -.++|.|++||||||+.+.|.+.+   |-..++.-++       +|+.+...++..    .++-.++..|.+- .++.+.
T Consensus       379 ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~  458 (591)
T KOG0057|consen  379 EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV  458 (591)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence            578999999999999999999887   4334443333       455555555433    3344455555443 334333


Q ss_pred             HHHHHH-----HhcC-C-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           75 SLIQKE-----MESS-D-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        75 ~~i~~~-----l~~~-~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +...++     +..- + ....+-+   .++.+++|++++++++..+|++ +++|+++
T Consensus       459 e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I-l~~DEaT  515 (591)
T KOG0057|consen  459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI-LLLDEAT  515 (591)
T ss_pred             HHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe-EEecCcc
Confidence            332221     1111 1 1222222   2556799999999999999998 7799988

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.91  E-value=3.5e-09  Score=89.24  Aligned_cols=112  Identities=21%  Similarity=0.300  Sum_probs=69.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSE----YGTTILNTIKEGKIVPSEVTV   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~   74 (196)
                      -.++|+|++||||||+++.|...+    |-..++..+       .+++.+...++    +..++++++..+....++...
T Consensus       368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~  447 (592)
T PRK10790        368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW  447 (592)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHH
Confidence            478999999999999999999554    222222211       12333333332    234578888776655554443


Q ss_pred             HHHHH-----HHhcC--CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           75 SLIQK-----EMESS--DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        75 ~~i~~-----~l~~~--~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+..     .+..-  +.+..+-+   .++.++.|++.+++++..+|++ ++||+|+
T Consensus       448 ~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i-lllDEpt  504 (592)
T PRK10790        448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI-LILDEAT  504 (592)
T ss_pred             HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE-EEEeCCc
Confidence            32221     11111  11333322   3666799999999999999998 7799999

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.91  E-value=4.7e-09  Score=87.36  Aligned_cols=112  Identities=18%  Similarity=0.309  Sum_probs=67.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|+|++||||||+++.|.   |....+.|.+              +++.....++    ...++++++..+.. ..+
T Consensus       349 ~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~  425 (529)
T TIGR02857       349 ERVALVGPSGAGKSTLLNLLL---GFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASD  425 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCH
Confidence            588999999999999999999   4443333322              2233332222    23357777776543 333


Q ss_pred             HHHHHHHH-----HHHhcC-C-CCcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           71 EVTVSLIQ-----KEMESS-D-SKKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        71 ~~~~~~i~-----~~l~~~-~-~~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      +...+.+.     +.+..- . .+..+-   ..++.++.|++.+++++..+|++ ++||+|+..+
T Consensus       426 ~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i-lilDE~ts~l  489 (529)
T TIGR02857       426 AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL-LLLDEPTAHL  489 (529)
T ss_pred             HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE-EEEeCccccc
Confidence            33322211     111111 1 122222   23667799999999999999998 7799998443

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.91  E-value=1.6e-09  Score=80.17  Aligned_cols=111  Identities=21%  Similarity=0.293  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------H-HHHhcCChh-----hHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------R-REIASNSEY-----GTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~-~~~~~~~~~-----~~~~~~~l~~~-   65 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                 + +.+....+.     ...+.+.+... 
T Consensus        32 ~~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~  108 (221)
T TIGR02211        32 EIVAIVGSSGSGKSTLLHLLG---GLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL  108 (221)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHH
Confidence            478999999999999999999   65443333221                 1 111111110     11233333211 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           66 --KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        66 --~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                        ...........+.+.+...+-..   -....++.++.|++.++.++...|++ ++||+|+.-
T Consensus       109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i-lllDEPt~~  171 (221)
T TIGR02211       109 LIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSL-VLADEPTGN  171 (221)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE-EEEeCCCCc
Confidence              01111111122233333221111   12344667799999999999999998 779999943

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.91  E-value=2e-09  Score=79.07  Aligned_cols=110  Identities=24%  Similarity=0.283  Sum_probs=60.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCChh-----hHHHHHHhhcC---CCCC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSEY-----GTTILNTIKEG---KIVP   69 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~~-----~~~~~~~l~~~---~~~~   69 (196)
                      +++|.|++||||||++++|+   |....+.|.+.             ++......+.     ...+.+++...   ....
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  103 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILA---TLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP  103 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence            88999999999999999999   65544433321             1111111110     11222222110   0011


Q ss_pred             HHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           70 SEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .....+.+.+.+...+-.   ......++.++.|++.++.++...|++ ++||+|+.-
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEPt~~  160 (211)
T cd03264         104 SKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI-LIVDEPTAG  160 (211)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCccc
Confidence            111112222333321111   112445777899999999999999999 779999943

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.91  E-value=3.1e-09  Score=81.45  Aligned_cols=109  Identities=23%  Similarity=0.310  Sum_probs=60.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH------------------HHHHHhcCChh------hHHHHHHhhcC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL------------------LRREIASNSEY------GTTILNTIKEG   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~------------------~~~~~~~~~~~------~~~~~~~l~~~   65 (196)
                      -+++|.|++||||||++++|+   |....+.|.+                  .++.+....+.      ...+.+++..+
T Consensus        34 e~~~l~G~nGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~  110 (280)
T PRK13649         34 SYTAFIGHTGSGKSTIMQLLN---GLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG  110 (280)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHH
Confidence            478999999999999999999   6543333321                  11111111111      11233333211


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCCC----cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 ---KIVPSEVTVSLIQKEMESSDSK----KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 ---~~~~~~~~~~~i~~~l~~~~~~----~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                         ...........+.+.+......    ..-+..++.++.|++.++.++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt  173 (280)
T PRK13649        111 PQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKI-LVLDEPT  173 (280)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence               0111111222223333321111    112445777899999999999999999 7799999

>PLN03130 ABC transporter C family member; Provisional

Probab=98.91  E-value=2.6e-09  Score=98.30  Aligned_cols=112  Identities=13%  Similarity=0.153  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSE----YGTTILNTIKEGKIVPSEVTV   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~   74 (196)
                      -.++|+|++||||||+++.|.+-+    |-..++.-+       -+|+.+...++    +..++++++..+....++.+.
T Consensus      1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~ 1345 (1622)
T PLN03130       1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345 (1622)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHH
Confidence            489999999999999999999555    222222211       13444443333    233578888766555554443


Q ss_pred             HHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           75 SLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        75 ~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+..     .+.. . +.+..|-+   .++.+++|++.+++++..+|.+ ++||+++
T Consensus      1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I-LILDEAT 1402 (1622)
T PLN03130       1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI-LVLDEAT 1402 (1622)
T ss_pred             HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence            33222     1211 1 12333333   3677899999999999999998 7799988

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.91  E-value=1.4e-08  Score=77.10  Aligned_cols=32  Identities=16%  Similarity=0.359  Sum_probs=27.7

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...++.++.|++.+++++...|++ ++||+|+.
T Consensus       150 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt~  181 (262)
T PRK09984        150 VSTLSGGQQQRVAIARALMQQAKV-ILADEPIA  181 (262)
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCE-EEecCccc
Confidence            445777899999999999999998 77999993

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.91  E-value=9.9e-10  Score=90.89  Aligned_cols=108  Identities=18%  Similarity=0.211  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---------------HHhcCCh-----hhHHHHHHhhcCCCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---------------EIASNSE-----YGTTILNTIKEGKIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---------------~~~~~~~-----~~~~~~~~l~~~~~~~   69 (196)
                      -+++|.|++||||||++++|+   |....+.|.+...               .+....+     ......+++..+....
T Consensus        38 e~~~liG~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  114 (510)
T PRK15439         38 EVHALLGGNGAGKSTLMKIIA---GIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKR  114 (510)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccc
Confidence            478999999999999999999   7654444433211               0011111     1112333333221111


Q ss_pred             HHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ....+.+.+.+....-.   ..-+..++.++.|++.++.++...|++ ++||+|+
T Consensus       115 -~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l-llLDEPt  168 (510)
T PRK15439        115 -QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI-LILDEPT  168 (510)
T ss_pred             -hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence             11112233333322211   112445777899999999999999998 8899999

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.91  E-value=8.6e-10  Score=80.99  Aligned_cols=111  Identities=22%  Similarity=0.295  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------HHHHhcCCh-----hhHHHHHHhhcC---CCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------RREIASNSE-----YGTTILNTIKEG---KIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------~~~~~~~~~-----~~~~~~~~l~~~---~~~~~~   71 (196)
                      -+++|+|++||||||+++.|+   |....+.|.+.          ++......+     ....+.+++...   ......
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~  103 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMIL---GIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE  103 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChH
Confidence            478999999999999999999   76544444321          111111111     111223332211   011111


Q ss_pred             HHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           72 VTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .....+.+.+...+-..   --...++.++.+++.++.++...|++ ++||+|+.-
T Consensus       104 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~-lllDEP~~~  158 (210)
T cd03269         104 EARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL-LILDEPFSG  158 (210)
T ss_pred             HHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCcC
Confidence            11222333333222111   12345777899999999999999998 779999943

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.91  E-value=2.3e-09  Score=80.87  Aligned_cols=108  Identities=20%  Similarity=0.249  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---HHhcCCh-------hhHHHHHHhhcCCCCCHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---EIASNSE-------YGTTILNTIKEGKIVPSEVTVSLIQK   79 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~i~~   79 (196)
                      -+++|.|++||||||++++|+   |....+.|.+...   .+....+       ....+.+.+........... ..+.+
T Consensus        31 e~~~I~G~NGsGKSTLl~~i~---Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~  106 (251)
T PRK09544         31 KILTLLGPNGAGKSTLVRVVL---GLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDI-LPALK  106 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHH-HHHHH
Confidence            478999999999999999999   7655555543211   0110000       01122333221111111111 11222


Q ss_pred             HHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           80 EMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+........-...++.++.+++.++.++...|++ ++||+|+
T Consensus       107 ~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l-llLDEPt  148 (251)
T PRK09544        107 RVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL-LVLDEPT  148 (251)
T ss_pred             HcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            22221111112445777899999999999999998 7899999

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.91  E-value=9.4e-09  Score=77.70  Aligned_cols=34  Identities=12%  Similarity=0.099  Sum_probs=28.4

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ...++.++.|++.+++++...|++ ++||+|+..+
T Consensus       138 ~~~LS~Gq~qrv~laral~~~p~l-LlLDEPt~~L  171 (254)
T PRK10418        138 PFEMSGGMLQRMMIALALLCEAPF-IIADEPTTDL  171 (254)
T ss_pred             CcccCHHHHHHHHHHHHHhcCCCE-EEEeCCCccc
Confidence            345777899999999999999998 8899999433

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.91  E-value=2.5e-09  Score=79.28  Aligned_cols=109  Identities=19%  Similarity=0.326  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------HHHHhcCChh-------hHHHHHHhhcCC-----CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------RREIASNSEY-------GTTILNTIKEGK-----IV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------~~~~~~~~~~-------~~~~~~~l~~~~-----~~   68 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.         ++.+...++.       ...+.+++..+.     ..
T Consensus         7 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~   83 (223)
T TIGR03771         7 ELLGLLGPNGAGKTTLLRAIL---GLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL   83 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence            589999999999999999999   65444444221         1111111111       122334433221     00


Q ss_pred             --CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 --PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 --~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                        ........+...++...-.   ..-+..++.++.|++.+++++...|++ +++|+|+
T Consensus        84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lilDEP~  141 (223)
T TIGR03771        84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSV-LLLDEPF  141 (223)
T ss_pred             cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence              1111112233333321111   112445777899999999999999999 7799999

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.90  E-value=1.7e-09  Score=80.20  Aligned_cols=111  Identities=20%  Similarity=0.172  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-------HhcCChhhHHHHHHhhcC---CCCCHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-------IASNSEYGTTILNTIKEG---KIVPSEVTVSLIQK   79 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~i~~   79 (196)
                      -+++|.|++||||||+++.|+   |....+.|++....       .........++.+++...   ...........+.+
T Consensus        49 e~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~  125 (224)
T cd03220          49 ERIGLIGRNGAGKSTLLRLLA---GIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDE  125 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            478999999999999999999   76554444331100       000011111222222211   00111111122222


Q ss_pred             HHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           80 EMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        80 ~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .+..   .......+..++.++.|++.+++++...|++ ++||+|+..
T Consensus       126 ~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEP~~g  172 (224)
T cd03220         126 IIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI-LLIDEVLAV  172 (224)
T ss_pred             HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence            2222   1111112456778899999999999999998 779999943

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.90  E-value=5.1e-09  Score=77.06  Aligned_cols=112  Identities=23%  Similarity=0.327  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSEY-----GTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~~-----~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+..            +.+....+.     ...+.+++..+.   ...
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  103 (213)
T cd03301          27 EFVVLLGPSGCGKTTTLRMIA---GLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP  103 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC
Confidence            478999999999999999999   665444443211            001111110     112233332110   111


Q ss_pred             HHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           70 SEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      .....+.+.+.+...+-..   .-+..++.++.|++.+++++...|++ ++||+|+.-+
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l-lllDEPt~~L  161 (213)
T cd03301         104 KDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV-FLMDEPLSNL  161 (213)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccC
Confidence            1222222333333221111   12345777899999999999999998 7799999443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.90  E-value=3.8e-09  Score=78.25  Aligned_cols=111  Identities=20%  Similarity=0.286  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEGK-   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~~-   66 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.                 ++.+....+     ....+.+++..+. 
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~  105 (222)
T PRK10908         29 EMAFLTGHSGAGKSTLLKLIC---GIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI  105 (222)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHH
Confidence            588999999999999999999   65544433221                 111111111     1112333332211 


Q ss_pred             --CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           67 --IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        67 --~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                        ..........+.+.+....-..+   -...++.++.|++.+++++...|++ ++||+|+..
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~  167 (222)
T PRK10908        106 IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV-LLADEPTGN  167 (222)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE-EEEeCCCCc
Confidence              11112112222333332211111   1344667799999999999999998 779999943

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.90  E-value=9e-10  Score=84.01  Aligned_cols=111  Identities=16%  Similarity=0.173  Sum_probs=60.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHH-------HHHHHhcCChh----hHHHHHHhhcCCCCCHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL-------LRREIASNSEY----GTTILNTIKEGKIVPSEVTVS   75 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~-------~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~   75 (196)
                      -+++|.|++||||||++++|...+   |-..++..++       .++.+...++.    ...+.+++.............
T Consensus        31 e~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~  110 (275)
T cd03289          31 QRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWK  110 (275)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHH
Confidence            478999999999999999999443   1112221111       12222221111    124555553221222222222


Q ss_pred             HHHHHHhcC------C-C-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           76 LIQKEMESS------D-S-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        76 ~i~~~l~~~------~-~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+ +.+...      . . ...+.   ..++.++.|++.+++++...|++ ++||+|+
T Consensus       111 ~l-~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i-lllDEpt  166 (275)
T cd03289         111 VA-EEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI-LLLDEPS  166 (275)
T ss_pred             HH-HHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEECcc
Confidence            11 111110      0 0 11111   12667799999999999999999 7799998

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.90  E-value=4.8e-09  Score=82.00  Aligned_cols=162  Identities=20%  Similarity=0.318  Sum_probs=82.0

Q ss_pred             EEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcCC---CCCHHHH
Q 029287           14 VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEGK---IVPSEVT   73 (196)
Q Consensus        14 i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~~---~~~~~~~   73 (196)
                      |.|++||||||++++|+   |....+.|.+..            +.+....+     ...++.+++..+.   .......
T Consensus         1 l~G~nGsGKSTLl~~ia---Gl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~   77 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLA---GFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI   77 (325)
T ss_pred             CcCCCCCCHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence            57999999999999999   765555443311            11111111     1122344433221   1122222


Q ss_pred             HHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---H
Q 029287           74 VSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---R  147 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~  147 (196)
                      ...+.+.+...+-..+   ....++.++.|++.+++++...|++ ++||+|+.-+.......    .......+.+   .
T Consensus        78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~l-llLDEP~s~LD~~~~~~----l~~~l~~l~~~~g~  152 (325)
T TIGR01187        78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRDQ----MQLELKTIQEQLGI  152 (325)
T ss_pred             HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCCccCCHHHHHH----HHHHHHHHHHhcCC
Confidence            2223333332221111   1344667799999999999999998 77999993332222111    0000001110   0


Q ss_pred             HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          148 LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ...+.+|....+..++++..++.   |...++++++++.
T Consensus       153 tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~  191 (325)
T TIGR01187       153 TFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE  191 (325)
T ss_pred             EEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            12456676666666666433332   3345677777653

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.90  E-value=6.7e-09  Score=78.68  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=27.5

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...++.++.|++.+++++...|++ ++||+|+.
T Consensus       149 ~~~LS~Gq~qrl~laral~~~p~l-lllDEPt~  180 (258)
T PRK11701        149 PTTFSGGMQQRLQIARNLVTHPRL-VFMDEPTG  180 (258)
T ss_pred             CccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence            345777899999999999999998 78999993

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.90  E-value=1.3e-09  Score=80.25  Aligned_cols=112  Identities=19%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEGK   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~~   66 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.                  ++.+....+     ....+.+++....
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~  100 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIA---GLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGL  100 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHH
Confidence            588999999999999999999   65443333221                  111111010     0112333332111


Q ss_pred             C-CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           67 I-VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        67 ~-~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      . .........+.+.+...+-.   ..-...++.++.|++.+++++...|++ ++||+|+..+
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEPt~~L  162 (214)
T cd03297         101 KRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL-LLLDEPFSAL  162 (214)
T ss_pred             hhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccC
Confidence            0 01111112223333321111   112345777899999999999999999 7799999443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.90  E-value=2.1e-09  Score=78.80  Aligned_cols=110  Identities=25%  Similarity=0.305  Sum_probs=59.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSEY-----GTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~~-----~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.            ++.+...++.     ...+.+++....   ...
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~  103 (208)
T cd03268          27 EIYGFLGPNGAGKTTTMKIIL---GLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIR  103 (208)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCc
Confidence            478999999999999999999   65544433221            1111111110     112222221110   011


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           70 SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .. ....+.+.+.......--...++.++.|++.++.++...|++ ++||+|+..
T Consensus       104 ~~-~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEPt~~  156 (208)
T cd03268         104 KK-RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL-LILDEPTNG  156 (208)
T ss_pred             HH-HHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE-EEECCCccc
Confidence            11 112222222211110111345777899999999999999998 789999944

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.89  E-value=4.9e-09  Score=89.88  Aligned_cols=110  Identities=21%  Similarity=0.293  Sum_probs=67.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|+|++||||||+++.|+   |....+.|.+              +++.+...++    ...++++++..+.+ ..+
T Consensus       484 ~~vaivG~sGsGKSTL~~ll~---g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~  560 (694)
T TIGR01846       484 EFIGIVGPSGSGKSTLTKLLQ---RLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPF  560 (694)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCH
Confidence            478999999999999999999   4443333322              2333332222    24457777776543 333


Q ss_pred             HHHHHHH-----HHHHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           71 EVTVSLI-----QKEMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        71 ~~~~~~i-----~~~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      +...+.+     .+.+.. . +.+..+-+   .++.++.|++.+++++..+|++ ++||+|+.
T Consensus       561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i-lilDEpts  622 (694)
T TIGR01846       561 EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI-LIFDEATS  622 (694)
T ss_pred             HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE-EEEECCCc
Confidence            3332221     112221 1 12333322   3667799999999999999999 77999993

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.89  E-value=9.4e-10  Score=79.88  Aligned_cols=112  Identities=17%  Similarity=0.236  Sum_probs=60.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH----------HhcCCh-----hhHHHHHHhhcCCCC-CHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE----------IASNSE-----YGTTILNTIKEGKIV-PSEVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~----------~~~~~~-----~~~~~~~~l~~~~~~-~~~~~   73 (196)
                      -+++|.|++||||||++++|+   |....+.|.+....          .....+     ....+.+++...... .....
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~  103 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIA---GIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAET  103 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHH
Confidence            488999999999999999999   76554444332110          000000     111222222211000 00111


Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ...+.+.+.......--+..++.++.+++.+++++...|++ ++||+|+.-+
T Consensus       104 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~-lllDEP~~~L  154 (195)
T PRK13541        104 LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL-WLLDEVETNL  154 (195)
T ss_pred             HHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccC
Confidence            11111221111111112445777899999999999999998 7799998544

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=4.8e-09  Score=80.37  Aligned_cols=109  Identities=21%  Similarity=0.308  Sum_probs=63.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChh------hHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEY------GTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~------~~~~~~~l~~~~---   66 (196)
                      -+++|.|++||||||+++.|+   |+...+.|.+              .++.+....+.      ..++.+.+..+.   
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~  110 (279)
T PRK13650         34 EWLSIIGHNGSGKSTTVRLID---GLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK  110 (279)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC
Confidence            478999999999999999999   6554444322              11112111111      123344443321   


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..........+.+.+...+-..   .....++.++.|++.+++++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l-LlLDEPt  168 (279)
T PRK13650        111 GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI-IILDEAT  168 (279)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence            1122222223333444322111   12345677799999999999999999 7799999

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.89  E-value=1e-08  Score=86.10  Aligned_cols=113  Identities=24%  Similarity=0.296  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCC--CCCHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGK--IVPSEV   72 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~--~~~~~~   72 (196)
                      -+++|+|++||||||+++.|...+    |-..++..++       +++.....++    ...++++++..+.  ...++.
T Consensus       359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~  438 (571)
T TIGR02203       359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE  438 (571)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence            478999999999999999999554    2222221111       2222333222    2445788887654  244443


Q ss_pred             HHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           73 TVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        73 ~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ..+.+.     +.+.. +. .+..+-+   .++.++.|++++++++..+|++ ++||+|+.
T Consensus       439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i-llLDEpts  498 (571)
T TIGR02203       439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI-LILDEATS  498 (571)
T ss_pred             HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCccc
Confidence            333222     22221 11 1333333   3677899999999999999998 77999993

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.89  E-value=4.1e-09  Score=79.09  Aligned_cols=31  Identities=13%  Similarity=0.308  Sum_probs=27.1

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       141 ~~~LS~Ge~qrv~laral~~~p~~-lllDEPt  171 (242)
T TIGR03411       141 AGLLSHGQKQWLEIGMLLMQDPKL-LLLDEPV  171 (242)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence            345777899999999999999998 8899999

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.89  E-value=3.7e-09  Score=79.97  Aligned_cols=110  Identities=22%  Similarity=0.336  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI---   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~---   67 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              ++.+....+     ....+.+++..+..   
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~  104 (256)
T TIGR03873        28 SLTGLLGPNGSGKSTLLRLLA---GALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHR  104 (256)
T ss_pred             cEEEEECCCCCCHHHHHHHHc---CCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhh
Confidence            488999999999999999999   65444333211              111111111     11223444432110   


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           68 ----VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        68 ----~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                          .........+.+.+...+...   .-+..++.++.+++.++.++...|++ ++||+|+.
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt~  166 (256)
T TIGR03873       105 SLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL-LLLDEPTN  166 (256)
T ss_pred             hhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCccc
Confidence                011111122333333221111   12445777899999999999999998 77999993

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.89  E-value=5.4e-09  Score=76.21  Aligned_cols=112  Identities=16%  Similarity=0.213  Sum_probs=61.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCC-----hhhHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNS-----EYGTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~-----~~~~~~~~~l~~~~~~-~~   70 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.             ++.+....     .....+.+++..+... ..
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~  104 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIA---GLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG  104 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcc
Confidence            488999999999999999999   66544444221             11111100     0112233333221100 01


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ......+.+.+........-+..++.++.+++.+++++...|++ +++|+|+..+
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~-lilDEP~~~L  158 (200)
T PRK13540        105 AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL-WLLDEPLVAL  158 (200)
T ss_pred             hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE-EEEeCCCccc
Confidence            11112222222221111112345777899999999999999998 7799999554

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.89  E-value=5e-09  Score=87.59  Aligned_cols=108  Identities=19%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEYGTTILNTIKEGKIVPSEVTVS   75 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   75 (196)
                      -+++|+|++||||||+++.|+   |....+.|.+              .++......+....+...++...  ......+
T Consensus       369 ~~~aivG~sGsGKSTl~~ll~---g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~  443 (555)
T TIGR01194       369 DIVFIVGENGCGKSTLAKLFC---GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLD  443 (555)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHH
Confidence            588999999999999999999   4443333322              22333333332222222222211  1111222


Q ss_pred             HHHHHHhcCCCCcEE---------EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           76 LIQKEMESSDSKKFL---------IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        76 ~i~~~l~~~~~~~~i---------id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      .+.+.++......++         ...++.++.|++++++++..+|++ ++||+|+.
T Consensus       444 ~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i-lilDE~ts  499 (555)
T TIGR01194       444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI-LLFDEWAA  499 (555)
T ss_pred             HHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCcc
Confidence            333444432222221         134667799999999999999999 77999983

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.89  E-value=7.2e-10  Score=93.19  Aligned_cols=109  Identities=22%  Similarity=0.333  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC--CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI--VP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~--~~   69 (196)
                      -.++|+|++||||||+++.|+..+   ..+.|++              +++.+...++    ...++++++..+..  ..
T Consensus       370 ~~~aIvG~sGsGKSTLl~ll~gl~---~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~  446 (582)
T PRK11176        370 KTVALVGRSGSGKSTIANLLTRFY---DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYS  446 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc---CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCC
Confidence            478999999999999999999544   3333322              2333333333    24457888876532  34


Q ss_pred             HHHHHHHHHH-----HHhc-CCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQK-----EMES-SDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~~-----~l~~-~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ++...+.+..     .+.. +.+ +..+-+   .++.++.|++.+++++...|++ ++||+|+
T Consensus       447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i-lilDEpt  508 (582)
T PRK11176        447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI-LILDEAT  508 (582)
T ss_pred             HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE-EEEECcc
Confidence            4433332221     1221 111 222222   2667799999999999999999 7799999

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.89  E-value=4.8e-09  Score=77.44  Aligned_cols=112  Identities=20%  Similarity=0.257  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~   68 (196)
                      -+++|.|++||||||+++.|+   |....+.|++.             ++.+....+     ....+.+++...   ...
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  108 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLA---GLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL  108 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC
Confidence            478999999999999999999   66544444321             111111111     011122222110   001


Q ss_pred             CHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           69 PSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ........+.+.++...-..   --...++.++.|++.+++++...|++ ++||+|+..+
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i-lllDEPt~~L  167 (218)
T cd03266         109 KGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV-LLLDEPTTGL  167 (218)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCCcCC
Confidence            11112222333333221111   12345777899999999999999998 7799999443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.88  E-value=1.8e-09  Score=89.39  Aligned_cols=109  Identities=15%  Similarity=0.170  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCCC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGKI--   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~~--   67 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.               ++.+....+     ......+++..+..  
T Consensus        32 e~~~liG~nGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  108 (510)
T PRK09700         32 EIHALLGENGAGKSTLMKVLS---GIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLT  108 (510)
T ss_pred             cEEEEECCCCCCHHHHHHHHc---CCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccc
Confidence            588999999999999999999   66544433321               111111111     11123444432110  


Q ss_pred             --------CCHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           68 --------VPSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        68 --------~~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                              .........+.+.+..   .....--+..++.++.|++.++.++...|++ ++||+|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l-llLDEPt  173 (510)
T PRK09700        109 KKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKV-IIMDEPT  173 (510)
T ss_pred             cccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence                    0111122223333332   2111222456778899999999999999998 7899999

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.88  E-value=6.2e-09  Score=76.99  Aligned_cols=110  Identities=22%  Similarity=0.234  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEG---KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~---~~~   68 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.             ++......+     ......+.+...   ...
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~  103 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLT---TLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV  103 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCC
Confidence            578999999999999999999   65444433221             111111111     011122222110   001


Q ss_pred             CHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           69 PSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ........+.+.+...+-..   .-+..++.++.|++.++.++...|++ +++|+|+.
T Consensus       104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l-lllDEPt~  160 (220)
T cd03265         104 PGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV-LFLDEPTI  160 (220)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcc
Confidence            11111222333333222111   12345777899999999999999998 77999993

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.88  E-value=1.1e-08  Score=76.97  Aligned_cols=31  Identities=26%  Similarity=0.594  Sum_probs=26.8

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ..++.++.|++.+++++...|++ ++||+|+.
T Consensus       143 ~~LSgG~~qrv~laral~~~p~l-lllDEPt~  173 (247)
T TIGR00972       143 LGLSGGQQQRLCIARALAVEPEV-LLLDEPTS  173 (247)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence            44667799999999999999998 77999993

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.88  E-value=7.3e-09  Score=76.19  Aligned_cols=111  Identities=19%  Similarity=0.275  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCCh-----hhHHHHHHhhcCC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSE-----YGTTILNTIKEGK--   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~-----~~~~~~~~l~~~~--   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.                ++.+....+     ....+.+++....  
T Consensus        27 ~~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~  103 (213)
T cd03262          27 EVVVIIGPSGSGKSTLLRCIN---LLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK  103 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHH
Confidence            488999999999999999999   65544333221                111111111     0112333332110  


Q ss_pred             --CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           67 --IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        67 --~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                        ..........+.+.+...+-..   --+..++.++.|++.+++++...|++ ++||+|+.-
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEP~~~  165 (213)
T cd03262         104 VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV-MLFDEPTSA  165 (213)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE-EEEeCCccC
Confidence              1111112222333333211111   12345777899999999999999998 779999943

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.88  E-value=6.4e-10  Score=82.45  Aligned_cols=108  Identities=21%  Similarity=0.286  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH----------HHHhcCCh-----hhHHHHHHhhcC---CCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR----------REIASNSE-----YGTTILNTIKEG---KIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~----------~~~~~~~~-----~~~~~~~~l~~~---~~~~~~   71 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+..          +......+     ....+.+++...   ......
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~  103 (223)
T TIGR03740        27 SVYGLLGPNGAGKSTLLKMIT---GILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDS  103 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHH
Confidence            478999999999999999999   655444442210          00111100     011122222110   001111


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ....+.+.+........-...++.++.++..++.++...|++ ++||+|+
T Consensus       104 -~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l-lllDEP~  152 (223)
T TIGR03740       104 -RIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL-LILDEPT  152 (223)
T ss_pred             -HHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE-EEECCCc
Confidence             112222222221111112345777899999999999999998 7799999

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.88  E-value=5.5e-09  Score=79.54  Aligned_cols=109  Identities=17%  Similarity=0.233  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh-------hHHHHHHhh----c
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY-------GTTILNTIK----E   64 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~-------~~~~~~~l~----~   64 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              ++.+...++.       ...+.+.+.    .
T Consensus        40 e~~~i~G~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~  116 (267)
T PRK15112         40 QTLAIIGENGSGKSTLAKMLA---GMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRL  116 (267)
T ss_pred             CEEEEEcCCCCCHHHHHHHHh---CCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHh
Confidence            478999999999999999999   65544433221              1111111110       011122221    1


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCC----CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           65 GKIVPSEVTVSLIQKEMESSDS----KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        65 ~~~~~~~~~~~~i~~~l~~~~~----~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..........+.+.+.+...+-    ...-+..++.++.|++.++.++...|++ ++||+|+
T Consensus       117 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l-llLDEPt  177 (267)
T PRK15112        117 NTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKV-IIADEAL  177 (267)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence            1111111122223333332221    1112455777899999999999999998 7799999

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.88  E-value=1.6e-09  Score=76.61  Aligned_cols=95  Identities=19%  Similarity=0.301  Sum_probs=58.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+....   ....     .++......+...+.+    .+...     
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~~---~~~i-----~~~~q~~~~~~~tv~~----nl~~~-----   87 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALA---GLWPWGSGRIGMPE---GEDL-----LFLPQRPYLPLGTLRE----QLIYP-----   87 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECC---CceE-----EEECCCCccccccHHH----Hhhcc-----
Confidence            478999999999999999999   77666666543211   0000     0000000011111111    11110     


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ....++.++.+++.+++++...|++ ++||+|+.-+
T Consensus        88 ~~~~LS~G~~~rv~laral~~~p~~-lllDEPt~~L  122 (166)
T cd03223          88 WDDVLSGGEQQRLAFARLLLHKPKF-VFLDEATSAL  122 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCE-EEEECCcccc
Confidence            1355777899999999999999999 7799999443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.87  E-value=2.9e-09  Score=79.34  Aligned_cols=109  Identities=23%  Similarity=0.289  Sum_probs=60.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcC---C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEG---K   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~---~   66 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.               +.......+     ....+.+++...   .
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~  103 (232)
T cd03218          27 EIVGLLGPNGAGKTTTFYMIV---GLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR  103 (232)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc
Confidence            478999999999999999999   66544443221               111111111     111233333211   0


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..........+.+.+....-..   --...++.++.|++.++.++...|++ ++||+|+
T Consensus       104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt  161 (232)
T cd03218         104 GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF-LLLDEPF  161 (232)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence            0111111112222222211111   12345777899999999999999999 7799999

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.87  E-value=7.1e-09  Score=72.75  Aligned_cols=27  Identities=30%  Similarity=0.697  Sum_probs=23.8

Q ss_pred             CCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           96 RSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        96 ~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      .++.|+.++++++...|++ +++|+|+.
T Consensus       155 GGQQQR~aIARaLameP~v-mLFDEPTS  181 (256)
T COG4598         155 GGQQQRVAIARALAMEPEV-MLFDEPTS  181 (256)
T ss_pred             chHHHHHHHHHHHhcCCce-EeecCCcc
Confidence            4689999999999999998 77999983

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.87  E-value=9e-09  Score=86.69  Aligned_cols=109  Identities=23%  Similarity=0.368  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|+|++||||||+++.|...+   ..+.|.+              +++.+...++    +..++++++..+.+ ..+
T Consensus       362 ~~v~IvG~sGsGKSTLl~lL~gl~---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d  438 (588)
T PRK13657        362 QTVAIVGPTGAGKSTLINLLQRVF---DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD  438 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCH
Confidence            478999999999999999999444   3333222              2333333222    23457777776543 334


Q ss_pred             HHHHHHH-----HHHHhcC-CC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLI-----QKEMESS-DS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i-----~~~l~~~-~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.....+     .+.+... .+ +..+.+   .++.++.|++.+++++..+|++ ++||+|+
T Consensus       439 ~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i-liLDEpt  499 (588)
T PRK13657        439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI-LILDEAT  499 (588)
T ss_pred             HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            4333222     2222211 11 333333   3667899999999999999999 7799998

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.87  E-value=2.7e-09  Score=78.57  Aligned_cols=111  Identities=19%  Similarity=0.228  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH------------HHHhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR------------REIASNSE-----YGTTILNTIKEG---KIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~------------~~~~~~~~-----~~~~~~~~l~~~---~~~~   69 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+..            +.+....+     ....+.+++...   ....
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~  101 (213)
T TIGR01277        25 EIVAIMGPSGAGKSTLLNLIA---GFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL  101 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCc
Confidence            488999999999999999999   665444443211            11111111     112333333211   0000


Q ss_pred             HHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           70 SEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .......+.+.+...+-   .......++.++.|++.+++++...|++ ++||+|+..
T Consensus       102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-lllDEPt~~  158 (213)
T TIGR01277       102 NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI-LLLDEPFSA  158 (213)
T ss_pred             cHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCCcc
Confidence            11111222333332111   1122456778899999999999999998 779999944

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.87  E-value=1.4e-09  Score=80.95  Aligned_cols=109  Identities=17%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---------HhcCCh-----hhHHHHHHhhcC-----CCCCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---------IASNSE-----YGTTILNTIKEG-----KIVPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---------~~~~~~-----~~~~~~~~l~~~-----~~~~~   70 (196)
                      -+++|+|++||||||++++|+   |....+.|.+....         .....+     ....+.+++...     .....
T Consensus        12 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~   88 (230)
T TIGR01184        12 EFISLIGHSGCGKSTLLNLIS---GLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSK   88 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCH
Confidence            488999999999999999999   66554444332110         000000     011222322211     01112


Q ss_pred             HHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ......+.+.+...+-..   --+..++.++.|++.+++++...|++ ++||+|+
T Consensus        89 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt  142 (230)
T TIGR01184        89 SERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKV-LLLDEPF  142 (230)
T ss_pred             HHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCCC
Confidence            221222233333211111   12345777899999999999999998 7799999

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.87  E-value=1.1e-09  Score=78.41  Aligned_cols=96  Identities=23%  Similarity=0.286  Sum_probs=56.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHh---hcCCCCCHHHHHHHHHHHHhcCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTI---KEGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+....... ......++..+   .....+....+.+    .      
T Consensus        29 e~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~-~~~~~~~~~~i~~~~q~~~~~~~tv~~----~------   94 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLT---GDLKPQQGEITLDGVPV-SDLEKALSSLISVLNQRPYLFDTTLRN----N------   94 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---ccCCCCCCEEEECCEEH-HHHHHHHHhhEEEEccCCeeecccHHH----h------
Confidence            478999999999999999999   76655555432110000 00000111111   0000000000001    0      


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           87 KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                         +...++.++.|+..+++++...|++ ++||+|+.
T Consensus        95 ---i~~~LS~G~~qrv~laral~~~p~~-lllDEP~~  127 (178)
T cd03247          95 ---LGRRFSGGERQRLALARILLQDAPI-VLLDEPTV  127 (178)
T ss_pred             ---hcccCCHHHHHHHHHHHHHhcCCCE-EEEECCcc
Confidence               1455777899999999999999998 77999993

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.86  E-value=4e-09  Score=78.87  Aligned_cols=109  Identities=18%  Similarity=0.313  Sum_probs=59.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH---------------HHHHHhcCCh-----hhHHHHHHhhcCCC-C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL---------------LRREIASNSE-----YGTTILNTIKEGKI-V   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~---------------~~~~~~~~~~-----~~~~~~~~l~~~~~-~   68 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+               .++......+     ....+.+++..+.. .
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~  108 (237)
T PRK11614         32 EIVTLIGANGAGKTTLLGTLC---GDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA  108 (237)
T ss_pred             cEEEEECCCCCCHHHHHHHHc---CCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc
Confidence            478999999999999999999   6554443322               1111111111     11123333332111 0


Q ss_pred             CHH---HHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 PSE---VTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~---~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...   .....+.+.+. ......--...++.++.|++.+++++...|++ ++||+|+
T Consensus       109 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i-lllDEPt  165 (237)
T PRK11614        109 ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL-LLLDEPS  165 (237)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE-EEEcCcc
Confidence            111   11111122221 11000112445777899999999999999998 7799999

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.86  E-value=5.6e-09  Score=87.19  Aligned_cols=106  Identities=23%  Similarity=0.263  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEYGTTILNTIKEGKIVPSEVTVS   75 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   75 (196)
                      -.++|.|++||||||+++.|.   |....+.|.+              +++.+...++....+...+......   ...+
T Consensus       350 ~~~aivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~---~~~~  423 (547)
T PRK10522        350 ELLFLIGGNGSGKSTLAMLLT---GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKP---ANPA  423 (547)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCc---hHHH
Confidence            588999999999999999999   5443333322              2222222222222222222221111   1112


Q ss_pred             HHHHHHhcCCCCcEE--E------eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           76 LIQKEMESSDSKKFL--I------DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        76 ~i~~~l~~~~~~~~i--i------d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+.+.++..+....+  -      ..++.++.|++.+++++..+|++ ++||+|+
T Consensus       424 ~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i-lilDE~t  477 (547)
T PRK10522        424 LVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI-LLLDEWA  477 (547)
T ss_pred             HHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence            223333322111111  1      24677899999999999999999 7799998

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.86  E-value=3.5e-08  Score=68.16  Aligned_cols=38  Identities=29%  Similarity=0.601  Sum_probs=30.1

Q ss_pred             EeCCCC----CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH
Q 029287           91 IDGFPR----SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV  129 (196)
Q Consensus        91 id~~~~----~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl  129 (196)
                      .|+||.    ++.|++++++++..+|++ +++|+|..-+.-.+
T Consensus       135 adr~plhlsggqqqrvaiaralmmkpqv-llfdeptaaldpei  176 (242)
T COG4161         135 ADRYPLHLSGGQQQRVAIARALMMEPQV-LLFDEPTAALDPEI  176 (242)
T ss_pred             cccCceecccchhhhHHHHHHHhcCCcE-EeecCcccccCHHH
Confidence            677764    689999999999999998 88999985544333

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.86  E-value=3.5e-09  Score=87.69  Aligned_cols=31  Identities=16%  Similarity=0.402  Sum_probs=28.3

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       401 ~~~LSgG~kqrl~la~al~~~p~l-LlLDEPt  431 (510)
T PRK15439        401 ARTLSGGNQQKVLIAKCLEASPQL-LIVDEPT  431 (510)
T ss_pred             cccCCcHHHHHHHHHHHHhhCCCE-EEECCCC
Confidence            566888999999999999999998 8899999

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.86  E-value=4.5e-09  Score=77.74  Aligned_cols=110  Identities=22%  Similarity=0.303  Sum_probs=60.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~~~~   71 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              ++.+....+    ....+.+.+.........
T Consensus        31 ~~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~  107 (220)
T cd03245          31 EKVAIIGRVGSGKSTLLKLLA---GLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADD  107 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCH
Confidence            488999999999999999999   65443333221              111111111    112444544332211111


Q ss_pred             HHHHHHHHHH------hcCC--CCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           72 VTVSLIQKEM------ESSD--SKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        72 ~~~~~i~~~l------~~~~--~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      .....+.+.+      ....  ....   -+..++.++.|++.+++++...|++ ++||+|+.
T Consensus       108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l-lllDEPt~  169 (220)
T cd03245         108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI-LLLDEPTS  169 (220)
T ss_pred             HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE-EEEeCccc
Confidence            1111111111      1100  0000   1245777899999999999999998 77999983

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.86  E-value=1.7e-09  Score=99.18  Aligned_cols=112  Identities=12%  Similarity=0.082  Sum_probs=69.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCChh----hHHHHHHhhcCCCCCHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSEY----GTTILNTIKEGKIVPSEVTV   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~   74 (196)
                      -.++|+|++||||||+++.|.+-+    |-..++.-+       -+|+.+...++.    ..++++++.......++.+.
T Consensus      1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~ 1392 (1522)
T TIGR00957      1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392 (1522)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHH
Confidence            488999999999999999999655    222232211       134444433332    23578887633344454443


Q ss_pred             HHHHH-----HHhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           75 SLIQK-----EMES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        75 ~~i~~-----~l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+..     .+.. . +.+..|-+   .++.+++|++.+++++..+|.+ ++||+++
T Consensus      1393 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I-LiLDEaT 1449 (1522)
T TIGR00957      1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI-LVLDEAT 1449 (1522)
T ss_pred             HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence            33221     1111 1 12333333   3677899999999999999998 7799988

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.86  E-value=3.6e-09  Score=74.67  Aligned_cols=87  Identities=21%  Similarity=0.308  Sum_probs=57.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+....                  ..+.....    .+...  ..-++
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~v~~~g------------------~~~~~~~~----~~~~~--~~i~~   79 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILS---GLYKPDSGEILVDG------------------KEVSFASP----RDARR--AGIAM   79 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECC------------------EECCcCCH----HHHHh--cCeEE
Confidence            478899999999999999999   87665555442211                  00000000    00011  11223


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                       +..++.++.|++.+++++...|++ +++|+|+..+
T Consensus        80 -~~qLS~G~~qrl~laral~~~p~i-lllDEP~~~L  113 (163)
T cd03216          80 -VYQLSVGERQMVEIARALARNARL-LILDEPTAAL  113 (163)
T ss_pred             -EEecCHHHHHHHHHHHHHhcCCCE-EEEECCCcCC
Confidence             334888999999999999999998 7799998443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.86  E-value=9.2e-09  Score=78.40  Aligned_cols=109  Identities=17%  Similarity=0.361  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChhh------HHHHHHhhcC---C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEYG------TTILNTIKEG---K   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~~------~~~~~~l~~~---~   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++.+....+..      ..+.+.+..+   .
T Consensus        36 e~~~I~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~  112 (269)
T PRK13648         36 QWTSIVGHNGSGKSTIAKLMI---GIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH  112 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc
Confidence            488999999999999999999   65544433221              11111111111      1112222111   0


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 IVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..........+...+...+-..   .....++.++.+++.+++++...|++ ++||+|+
T Consensus       113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-llLDEPt  170 (269)
T PRK13648        113 AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV-IILDEAT  170 (269)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            1111111222333333221111   12345777899999999999999999 7799999

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.8e-08  Score=80.18  Aligned_cols=113  Identities=23%  Similarity=0.338  Sum_probs=68.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCC-CHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIV-PSEVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~~~~   73 (196)
                      -.|+|.|++||||||+++.|...|    |-..++..++       .++.+...++    +..+++++++-..+. .++.+
T Consensus       365 EkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel  444 (573)
T COG4987         365 EKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEEL  444 (573)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHH
Confidence            378999999999999999999655    1111111111       2333333333    344467777654433 33333


Q ss_pred             HHHH-----HHHHhcC--CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           74 VSLI-----QKEMESS--DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        74 ~~~i-----~~~l~~~--~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...+     .+.+...  +...|+-+   +++.++.+++++++.+..+..+ +.||+|++
T Consensus       445 ~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl-~lLDEPTe  503 (573)
T COG4987         445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL-WLLDEPTE  503 (573)
T ss_pred             HHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe-EEecCCcc
Confidence            2221     2222222  12445544   4788899999999998888887 77999993

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.86  E-value=5e-10  Score=80.15  Aligned_cols=102  Identities=24%  Similarity=0.317  Sum_probs=55.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc--CChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS--NSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      -+++|.|++||||||+++.|+   |....+.|++.......  ..+.....+..+.   .++...   .   ........
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~---~~~q~~---~---~~~~~t~~   94 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIA---GLEEPDSGSILIDGEDLTDLEDELPPLRRRIG---MVFQDF---A---LFPHLTVL   94 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccchhHHHHhhcEE---EEecCC---c---cCCCCCHH
Confidence            488999999999999999999   76555555443111000  0000001111000   000000   0   00000000


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ..+...++.++.|++.++.++...|++ ++||+|+.-
T Consensus        95 ~~l~~~lS~G~~qr~~la~al~~~p~l-lilDEP~~~  130 (178)
T cd03229          95 ENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSA  130 (178)
T ss_pred             HheeecCCHHHHHHHHHHHHHHCCCCE-EEEeCCccc
Confidence            001111777899999999999999999 779999843

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.86  E-value=1.5e-08  Score=74.30  Aligned_cols=28  Identities=25%  Similarity=0.591  Sum_probs=24.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           94 FPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ++.++.+++.+++++...|.+ ++||+|.
T Consensus       172 LS~Ge~rrvLiaRALv~~P~L-LiLDEP~  199 (257)
T COG1119         172 LSQGEQRRVLIARALVKDPEL-LILDEPA  199 (257)
T ss_pred             cCHhHHHHHHHHHHHhcCCCE-EEecCcc
Confidence            555688999999999999999 7799998

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.86  E-value=1.1e-08  Score=86.54  Aligned_cols=31  Identities=16%  Similarity=0.289  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       166 ~~~LSgGq~QRv~iA~AL~~~P~l-LllDEPt  196 (623)
T PRK10261        166 PHQLSGGMRQRVMIAMALSCRPAV-LIADEPT  196 (623)
T ss_pred             CccCCHHHHHHHHHHHHHhCCCCE-EEEeCCC
Confidence            344666799999999999999998 8899999

>PHA03136 thymidine kinase; Provisional

Probab=98.86  E-value=3.7e-07  Score=71.46  Aligned_cols=45  Identities=11%  Similarity=0.185  Sum_probs=31.6

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~  154 (196)
                      +.||.+|||+.+++++.+|+.+|.+..+.-+.+.++.....|..+
T Consensus       190 p~pD~IIyL~l~~e~~~~RI~kRgR~~E~I~~~YL~~L~~~Y~~~  234 (378)
T PHA03136        190 PHGGNIVIMDLDECEHAERIIARGRPGEAIDVRFLCALHNIYICF  234 (378)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999994332222455655544455544

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.86  E-value=1.2e-08  Score=77.93  Aligned_cols=33  Identities=24%  Similarity=0.507  Sum_probs=26.5

Q ss_pred             EeCCCCCHHHHHHHHHHhC---------CCCcEEEEeecChHH
Q 029287           91 IDGFPRSEENRAAFERIMG---------AEPDIVLFFDCPEEE  124 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~---------~~p~~~i~ld~~~~~  124 (196)
                      +..++.++.|++.++.++.         ..|++ ++||+|+.-
T Consensus       143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~l-llLDEPt~~  184 (272)
T PRK13547        143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRY-LLLDEPTAA  184 (272)
T ss_pred             cccCCHHHHHHHHHHHHHhccccccccCCCCCE-EEEcCcccc
Confidence            3446677999999999988         48998 779999933

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.86  E-value=8e-09  Score=77.09  Aligned_cols=111  Identities=18%  Similarity=0.249  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------H-HHHhcCChh-----hHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------R-REIASNSEY-----GTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~-~~~~~~~~~-----~~~~~~~l~~~-   65 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.                 + +.+....+.     ...+.+++... 
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  112 (233)
T PRK11629         36 EMMAIVGSSGSGKSTLLHLLG---GLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL  112 (233)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHH
Confidence            478999999999999999999   65443333221                 0 111111111     11233333211 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           66 --KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        66 --~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                        ...........+.+.+...+-..+   ....++.++.|++.++.++...|++ ++||+|+.-
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~l-llLDEPt~~  175 (233)
T PRK11629        113 LIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL-VLADEPTGN  175 (233)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCC
Confidence              011111122223333332221111   2344667799999999999999998 779999943

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.86  E-value=2.9e-09  Score=79.57  Aligned_cols=109  Identities=14%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcCC---CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEGK---IV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~~---~~   68 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.             ++......+     ....+.+.+....   ..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~  104 (236)
T TIGR03864        28 EFVALLGPNGAGKSTLFSLLT---RLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL  104 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC
Confidence            488999999999999999999   65444433221             011111110     1112233332111   11


Q ss_pred             CHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 PSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ........+.+.+...+-..   --+..++.++.|++.++.++...|++ ++||+|+
T Consensus       105 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l-lllDEP~  160 (236)
T TIGR03864       105 SRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL-LLLDEPT  160 (236)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            11111222233333211111   12345777899999999999999999 7799999

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.86  E-value=7.7e-09  Score=71.97  Aligned_cols=110  Identities=25%  Similarity=0.373  Sum_probs=61.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH--HHHhcCChhhH-H---------------------HHH----Hh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR--REIASNSEYGT-T---------------------ILN----TI   62 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~--~~~~~~~~~~~-~---------------------~~~----~l   62 (196)
                      -++|+||+||||||+...|+   |+...+.|++.-  +.+....+.+. .                     +.+    ..
T Consensus        38 ~vaiVG~SGSGKSTLl~vlA---GLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle  114 (228)
T COG4181          38 TVAIVGPSGSGKSTLLAVLA---GLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE  114 (228)
T ss_pred             eEEEEcCCCCcHHhHHHHHh---cCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence            57899999999999999999   988888776521  11111111000 0                     000    00


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEeecChHHHHH
Q 029287           63 KEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFP----RSEENRAAFERIMGAEPDIVLFFDCPEEEMVN  127 (196)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~l~~~~~~~~iid~~~----~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~  127 (196)
                      ..|....+  ......+.+....... -+.-||    .+.+|++++++++...|++ +|-|+|+-.+.+
T Consensus       115 L~ge~~~~--~~~~A~~lL~~vGLg~-Rl~HyP~qLSGGEQQRVAiARAfa~~P~v-LfADEPTGNLD~  179 (228)
T COG4181         115 LRGESSAD--SRAGAKALLEAVGLGK-RLTHYPAQLSGGEQQRVALARAFAGRPDV-LFADEPTGNLDR  179 (228)
T ss_pred             hcCCcccc--HHHHHHHHHHHhCccc-ccccCccccCchHHHHHHHHHHhcCCCCE-EeccCCCCCcch
Confidence            01100000  0111222222211111 134455    4589999999999999999 889999865443

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.85  E-value=5.2e-09  Score=88.57  Aligned_cols=87  Identities=14%  Similarity=0.276  Sum_probs=50.4

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCc
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGK  167 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  167 (196)
                      ...++.++.|++.++.++...|++ +++|+|+.-+.......    ..+-...+.+   ....+.+|+...+..+++...
T Consensus       461 ~~~LSgGqrQRv~iAraL~~~p~l-lllDEPts~LD~~~~~~----i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~  535 (623)
T PRK10261        461 PHEFSGGQRQRICIARALALNPKV-IIADEAVSALDVSIRGQ----IINLLLDLQRDFGIAYLFISHDMAVVERISHRVA  535 (623)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccCCHHHHHH----HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            345667799999999999999999 77999992222111111    0000000111   012566777777777777543


Q ss_pred             EEE---EeCCCCHhHHHH
Q 029287          168 LYT---INAVGTVDEIFE  182 (196)
Q Consensus       168 ~~~---I~~~~~~~~v~~  182 (196)
                      ++.   |...++.++++.
T Consensus       536 vl~~G~iv~~g~~~~i~~  553 (623)
T PRK10261        536 VMYLGQIVEIGPRRAVFE  553 (623)
T ss_pred             EEECCEEEEecCHHHHhc
Confidence            332   334567777754

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=3.5e-09  Score=80.78  Aligned_cols=109  Identities=24%  Similarity=0.378  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCChh------hHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSEY------GTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~~------~~~~~~~l~~~~---   66 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+              +++.+....+.      ..++.+++..+.   
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~  112 (271)
T PRK13632         36 EYVAILGHNGSGKSTISKILT---GLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK  112 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc
Confidence            488999999999999999999   6544333322              11111111111      123344433211   


Q ss_pred             CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..........+.+.+...+-.   ..-...++.++.|++.+++++...|++ ++||+|+
T Consensus       113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-llLDEP~  170 (271)
T PRK13632        113 KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI-IIFDEST  170 (271)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            111222222233333322111   112455777899999999999999999 7799999

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.85  E-value=7.4e-10  Score=78.91  Aligned_cols=96  Identities=21%  Similarity=0.279  Sum_probs=55.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh---cC-CCCCHHHHHHHHHHHHhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK---EG-KIVPSEVTVSLIQKEMESSD   85 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~---~~-~~~~~~~~~~~i~~~l~~~~   85 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+........ ......+..+.   .. ...+...+.+.+.       
T Consensus        27 e~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~-~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-------   95 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIIL---GLLKPDSGEIKVLGKDIK-KEPEEVKRRIGYLPEEPSLYENLTVRENLK-------   95 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEcc-cchHhhhccEEEEecCCccccCCcHHHHhh-------
Confidence            478999999999999999999   765555554321110000 00001111000   00 0000001111110       


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                              ++.++.+++.+++++...|++ +++|+|+..+
T Consensus        96 --------LS~G~~qrv~laral~~~p~i-lllDEPt~~L  126 (173)
T cd03230          96 --------LSGGMKQRLALAQALLHDPEL-LILDEPTSGL  126 (173)
T ss_pred             --------cCHHHHHHHHHHHHHHcCCCE-EEEeCCccCC
Confidence                    777899999999999999999 7799999443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.85  E-value=8.7e-09  Score=82.55  Aligned_cols=111  Identities=22%  Similarity=0.338  Sum_probs=64.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh----CCceechhHHH-------HHHHhcCCh----hhHHHHHHhhc-CCCCCHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGELL-------RREIASNSE----YGTTILNTIKE-GKIVPSEVTV   74 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~~-------~~~~~~~~~----~~~~~~~~l~~-~~~~~~~~~~   74 (196)
                      .++|+|||||||||+++.|.--+    |...+|.-++-       -+.+.+.++    +.-++.+++.. +...+.+.+.
T Consensus       364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIi  443 (580)
T COG4618         364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVI  443 (580)
T ss_pred             eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHH
Confidence            67999999999999999999332    23333332321       112222222    12235566644 3233333221


Q ss_pred             H-----HHHHHHh-cC-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           75 S-----LIQKEME-SS-DSKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        75 ~-----~i~~~l~-~~-~~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +     .+.+.+. .. +++..|-++   ++.++.|+..+++++-..|.+ ++||+|.
T Consensus       444 eAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l-vVLDEPN  500 (580)
T COG4618         444 EAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL-VVLDEPN  500 (580)
T ss_pred             HHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE-EEecCCC
Confidence            1     1111111 11 234445443   666799999999999889999 6799997

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=3.6e-09  Score=81.02  Aligned_cols=109  Identities=23%  Similarity=0.345  Sum_probs=63.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh------hHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY------GTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~------~~~~~~~l~~~~---   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++.+....+.      ..++.+++..+.   
T Consensus        34 e~~~i~G~nGaGKSTLl~~i~---G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~  110 (279)
T PRK13635         34 EWVAIVGHNGSGKSTLAKLLN---GLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI  110 (279)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC
Confidence            478999999999999999999   66544444321              1111111111      123444443221   


Q ss_pred             CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..+.......+.+.+...+-.   ......++.++.+++.+++++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l-llLDEPt  168 (279)
T PRK13635        111 GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI-IILDEAT  168 (279)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            112222222333333322211   112455777899999999999999999 7799999

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=7e-09  Score=79.26  Aligned_cols=109  Identities=19%  Similarity=0.279  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH---------------HHHHHhcCCh------hhHHHHHHhhcCC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL---------------LRREIASNSE------YGTTILNTIKEGK--   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~---------------~~~~~~~~~~------~~~~~~~~l~~~~--   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+               .++.+....+      ....+.+++..+.  
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~  105 (274)
T PRK13644         29 EYIGIIGKNGSGKSTLALHLN---GLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPEN  105 (274)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHH
Confidence            488999999999999999999   6544433322               1111111111      1123444443221  


Q ss_pred             -CCCHHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 -IVPSEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 -~~~~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ..........+.+.+...+-   ....+..++.++.|++.++.++...|++ ++||+|+
T Consensus       106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l-llLDEPt  164 (274)
T PRK13644        106 LCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC-LIFDEVT  164 (274)
T ss_pred             cCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence             11222222223333332221   1122456778899999999999999999 7799999

>PHA00729 NTP-binding motif containing protein

Probab=98.84  E-value=4.6e-08  Score=71.79  Aligned_cols=112  Identities=14%  Similarity=0.166  Sum_probs=64.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCC--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-   84 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-   84 (196)
                      ....|+|+|+||+||||+|..|++.++.  ..+..++.....              -.....++.......+....... 
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~--------------~~~~~fid~~~Ll~~L~~a~~~~~   81 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY--------------VQNSYFFELPDALEKIQDAIDNDY   81 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc--------------CCcEEEEEHHHHHHHHHHHHhcCC
Confidence            3457889999999999999999988651  111111111100              00111122233333333333221 


Q ss_pred             CCCcEEEeCCCCC----------HHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           85 DSKKFLIDGFPRS----------EENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        85 ~~~~~iid~~~~~----------~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      .....|+|.+...          +.....+..++...+++++++.++++.+..++.+|+
T Consensus        82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg  140 (226)
T PHA00729         82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG  140 (226)
T ss_pred             CCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence            1234578883211          111223445555578999999999999999999984

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.84  E-value=2.5e-09  Score=78.26  Aligned_cols=111  Identities=21%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCChh-----hHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSEY-----GTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~~-----~~~~~~~l~~~-   65 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.                  ++.+....+.     ...+.+++..+ 
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~  101 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIG---LLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGL  101 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHH
Confidence            478999999999999999999   65443333221                  1111111110     11222222211 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           66 --KIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        66 --~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                        ...........+.+.+...+-.   .-.+..++.++.++..+++++...|++ ++||+|+..
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l-lllDEPt~~  164 (206)
T TIGR03608       102 KYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL-ILADEPTGS  164 (206)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCcCC
Confidence              0111111222233333321111   112345777899999999999999999 779999954

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.84  E-value=2e-09  Score=74.39  Aligned_cols=75  Identities=21%  Similarity=0.294  Sum_probs=55.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+....                  .                   ....
T Consensus        27 e~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~~------------------~-------------------~~i~   66 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIA---GELEPDEGIVTWGS------------------T-------------------VKIG   66 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHc---CCCCCCceEEEECC------------------e-------------------EEEE
Confidence            478999999999999999999   77655554432110                  0                   0122


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ++..++.++.++..+++++...|++ +++|+|+..+
T Consensus        67 ~~~~lS~G~~~rv~laral~~~p~i-lllDEP~~~L  101 (144)
T cd03221          67 YFEQLSGGEKMRLALAKLLLENPNL-LLLDEPTNHL  101 (144)
T ss_pred             EEccCCHHHHHHHHHHHHHhcCCCE-EEEeCCccCC
Confidence            2333888899999999999999998 7799999443

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.84  E-value=5.6e-09  Score=87.67  Aligned_cols=109  Identities=21%  Similarity=0.371  Sum_probs=65.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -+++|.|++||||||+++.|...+   ..+.|.+              .++.+...++    +..++++++..+.+ ..+
T Consensus       367 ~~~aivG~sGsGKSTL~~ll~g~~---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~  443 (574)
T PRK11160        367 EKVALLGRTGCGKSTLLQLLTRAW---DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASD  443 (574)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCH
Confidence            488999999999999999999544   3332221              2333332222    23346777766543 233


Q ss_pred             HHHHHHHHH-----HHhcCC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQK-----EMESSD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~~-----~l~~~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +...+.+..     .+..++ .+..+-+   .++.++.|++.+++++..+|++ ++||+|+
T Consensus       444 ~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i-lilDE~t  503 (574)
T PRK11160        444 EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL-LLLDEPT  503 (574)
T ss_pred             HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            332222111     111111 1222222   2666799999999999999998 7799998

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.84  E-value=3.5e-09  Score=77.59  Aligned_cols=110  Identities=16%  Similarity=0.136  Sum_probs=59.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------HHHHhcCCh-----hhHHHHHHhhcCC---CCCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------RREIASNSE-----YGTTILNTIKEGK---IVPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------~~~~~~~~~-----~~~~~~~~l~~~~---~~~~   70 (196)
                      -+++|+|++||||||+++.|+   |....+.|.+.           ++......+     ......+.+....   ....
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~  105 (207)
T PRK13539         29 EALVLTGPNGSGKTTLLRLIA---GLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEE  105 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcH
Confidence            488999999999999999999   65444433221           111111110     0111222221100   0111


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .. ...+.+.+........-...++.++.+++.++.++...|++ ++||+|+..
T Consensus       106 ~~-~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt~~  157 (207)
T PRK13539        106 LD-IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI-WILDEPTAA  157 (207)
T ss_pred             HH-HHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence            11 11122222211100111234677799999999999999999 779999944

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.84  E-value=2.6e-09  Score=77.75  Aligned_cols=34  Identities=15%  Similarity=0.314  Sum_probs=28.3

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      +..++.++.+++.+++++...|++ ++||+|+..+
T Consensus       125 ~~~LS~G~~qrv~la~al~~~p~l-lllDEPt~~L  158 (198)
T TIGR01189       125 AAQLSAGQQRRLALARLWLSRAPL-WILDEPTTAL  158 (198)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCE-EEEeCCCcCC
Confidence            345777899999999999999998 7799998543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.84  E-value=1.4e-08  Score=77.37  Aligned_cols=31  Identities=19%  Similarity=0.482  Sum_probs=27.0

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ..++.++.|++.+++++...|++ ++||+|+.
T Consensus       153 ~~LS~G~~qrl~laral~~~p~l-llLDEPt~  183 (269)
T PRK14259        153 YSLSGGQQQRLCIARTIAIEPEV-ILMDEPCS  183 (269)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCE-EEEcCCCc
Confidence            45777899999999999999998 77999993

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.84  E-value=1.3e-08  Score=77.46  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ...++.++.|++.+++++...|++ ++||+|+..
T Consensus       149 ~~~LS~Ge~qrl~laral~~~p~l-llLDEPt~~  181 (268)
T PRK10419        149 PPQLSGGQLQRVCLARALAVEPKL-LILDEAVSN  181 (268)
T ss_pred             CccCChHHHHHHHHHHHHhcCCCE-EEEeCCCcc
Confidence            344677899999999999999999 779999933

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.84  E-value=5.3e-09  Score=87.02  Aligned_cols=109  Identities=22%  Similarity=0.267  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCCh-------hhHHHHHHhhc-CCCCCHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNSE-------YGTTILNTIKE-GKIVPSEVTVSLIQ   78 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~~-------~~~~~~~~l~~-~~~~~~~~~~~~i~   78 (196)
                      -+++|.|++||||||++++|+   |....+.|.+....   +....+       ......+.+.. ............+.
T Consensus       346 e~~~l~G~NGsGKSTLl~~i~---G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l  422 (530)
T PRK15064        346 ERLAIIGENGVGKTTLLRTLV---GELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL  422 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence            378999999999999999999   76554444432110   111000       01122333221 00011111122222


Q ss_pred             HHHhcC-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           79 KEMESS-DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        79 ~~l~~~-~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+... .....-+..++.++.|++.++.++...|++ ++||+|+
T Consensus       423 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l-llLDEPt  466 (530)
T PRK15064        423 GRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV-LVMDEPT  466 (530)
T ss_pred             HHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            232221 111122556778899999999999999999 7899999

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.84  E-value=3.2e-09  Score=80.29  Aligned_cols=109  Identities=18%  Similarity=0.238  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---------HhcCCh-----hhHHHHHHhhcC---CCCCHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---------IASNSE-----YGTTILNTIKEG---KIVPSEV   72 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---------~~~~~~-----~~~~~~~~l~~~---~~~~~~~   72 (196)
                      -+++|+|++||||||++++|+   |....+.|.+....         .....+     ....+.+++..+   .......
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  104 (255)
T PRK11248         28 ELLVVLGPSGCGKTTLLNLIA---GFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQ  104 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHH
Confidence            478999999999999999999   66544444332110         000000     011223333211   0111111


Q ss_pred             HHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           73 TVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        73 ~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ....+.+.+...+-..+   -...++.++.|++.++.++...|++ ++||+|+
T Consensus       105 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l-llLDEPt  156 (255)
T PRK11248        105 RLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL-LLLDEPF  156 (255)
T ss_pred             HHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            12223333332211111   1345677899999999999999998 7799999

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.83  E-value=6.7e-09  Score=77.27  Aligned_cols=109  Identities=20%  Similarity=0.245  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh----hHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY----GTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~----~~~~~~~l~~~~~~-~~   70 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++.+....+.    ...+.+++...... ..
T Consensus        30 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~  106 (229)
T cd03254          30 ETVAIVGPTGAGKTTLINLLM---RFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD  106 (229)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCH
Confidence            478999999999999999999   65444333221              1111111111    11344444332211 11


Q ss_pred             HHHHHH-----HHHHHhcCC--CCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSL-----IQKEMESSD--SKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~-----i~~~l~~~~--~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ......     +...+....  ....   -...++.++.+++.+++++...|++ ++||+|+
T Consensus       107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l-lllDEP~  167 (229)
T cd03254         107 EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI-LILDEAT  167 (229)
T ss_pred             HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence            111111     111111110  0000   1345777899999999999999999 7799999

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.83  E-value=5.6e-09  Score=78.74  Aligned_cols=31  Identities=19%  Similarity=0.453  Sum_probs=27.1

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       144 ~~~LSgG~~qrv~laral~~~p~l-llLDEP~  174 (250)
T PRK14247        144 AGKLSGGQQQRLCIARALAFQPEV-LLADEPT  174 (250)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            345777899999999999999999 7799999

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.82  E-value=1.9e-09  Score=79.80  Aligned_cols=111  Identities=19%  Similarity=0.204  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~~~~   71 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++.+....+    ....+.+++.........
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~  107 (221)
T cd03244          31 EKVGIVGRTGSGKSSLLLALF---RLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDE  107 (221)
T ss_pred             CEEEEECCCCCCHHHHHHHHH---cCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHH
Confidence            478999999999999999999   65444433221              111111111    011334444322112222


Q ss_pred             HHHHHH-----HHHHhc-C-CCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           72 VTVSLI-----QKEMES-S-DSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        72 ~~~~~i-----~~~l~~-~-~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .....+     .+.+.. . ....   --...++.++.|++.+++++...|++ ++||+|+.-
T Consensus       108 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l-lllDEP~~~  169 (221)
T cd03244         108 ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI-LVLDEATAS  169 (221)
T ss_pred             HHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcccc
Confidence            111111     111110 0 0000   11345667799999999999999998 779999843

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.82  E-value=2.6e-08  Score=78.09  Aligned_cols=85  Identities=11%  Similarity=0.195  Sum_probs=50.3

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCcEE
Q 029287           93 GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGKLY  169 (196)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  169 (196)
                      .++.++.|++.++.++...|++ +++|+|+.-+..-....    ..+-...+.+   ....+.+|+...+..++++..++
T Consensus       158 ~LSgG~~QRv~iArAL~~~P~l-lilDEPts~LD~~~~~~----i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm  232 (330)
T PRK15093        158 ELTEGECQKVMIAIALANQPRL-LIADEPTNAMEPTTQAQ----IFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL  232 (330)
T ss_pred             hCCHHHHHHHHHHHHHHCCCCE-EEEeCCCCcCCHHHHHH----HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            3555799999999999999999 77999992221111110    0000011111   01256678888887778755444


Q ss_pred             E---EeCCCCHhHHHH
Q 029287          170 T---INAVGTVDEIFE  182 (196)
Q Consensus       170 ~---I~~~~~~~~v~~  182 (196)
                      .   |...++.+++++
T Consensus       233 ~~G~ive~g~~~~i~~  248 (330)
T PRK15093        233 YCGQTVETAPSKELVT  248 (330)
T ss_pred             ECCEEEEECCHHHHHh
Confidence            2   445567777654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.82  E-value=5.4e-09  Score=77.73  Aligned_cols=110  Identities=25%  Similarity=0.308  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------H-HHHhcCCh-----hhHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------R-REIASNSE-----YGTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~-~~~~~~~~-----~~~~~~~~l~~~-   65 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+.                 + +.+....+     ....+.+.+... 
T Consensus        37 e~~~i~G~nGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~  113 (228)
T PRK10584         37 ETIALIGESGSGKSTLLAILA---GLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPA  113 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHH---cCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHH
Confidence            488999999999999999999   65443333221                 0 11111110     011222222210 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           66 --KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        66 --~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                        .........+.+.+.+...+...   .-...++.++.|++.++.++...|++ ++||+|+.
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l-lllDEPt~  175 (228)
T PRK10584        114 LLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV-LFADEPTG  175 (228)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCC
Confidence              01111122223333333222111   12345777899999999999999998 77999993

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.82  E-value=9.9e-09  Score=85.39  Aligned_cols=87  Identities=15%  Similarity=0.305  Sum_probs=49.6

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH---HHHHHHhchHhHHHHHHhcCc
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK---RLQVFKALNLPVINYYARRGK  167 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  167 (196)
                      +..++.++.|++.++.++...|++ ++||+|+.-+...-...    ..+-...+.+   ....+.+|+...+..+++...
T Consensus       423 ~~~LSgG~~qrv~la~al~~~p~l-lllDEPt~~LD~~~~~~----l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~  497 (529)
T PRK15134        423 PAEFSGGQRQRIAIARALILKPSL-IILDEPTSSLDKTVQAQ----ILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI  497 (529)
T ss_pred             CccCCHHHHHHHHHHHHHhCCCCE-EEeeCCccccCHHHHHH----HHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEE
Confidence            456777899999999999999999 77999993222221111    0000011111   012456677766666666433


Q ss_pred             EEE---EeCCCCHhHHHH
Q 029287          168 LYT---INAVGTVDEIFE  182 (196)
Q Consensus       168 ~~~---I~~~~~~~~v~~  182 (196)
                      ++.   |...++.+++++
T Consensus       498 ~l~~G~i~~~~~~~~~~~  515 (529)
T PRK15134        498 VLRQGEVVEQGDCERVFA  515 (529)
T ss_pred             EEECCEEEEEcCHHHHhc
Confidence            332   334456666653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.82  E-value=1.4e-08  Score=76.95  Aligned_cols=31  Identities=23%  Similarity=0.531  Sum_probs=26.8

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ..++.++.|++.+++++...|++ ++||+|+.
T Consensus       153 ~~LSgG~~qrv~laral~~~p~l-lllDEPt~  183 (258)
T PRK14268        153 LSLSGGQQQRLCIARTLAVKPKI-ILFDEPTS  183 (258)
T ss_pred             hhCCHHHHHHHHHHHHHHcCCCE-EEEeCCCc
Confidence            44667799999999999999998 78999993

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.82  E-value=9.7e-09  Score=72.27  Aligned_cols=108  Identities=20%  Similarity=0.315  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH--------------Hh-----cCC------hhhHHHHHHhhcC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE--------------IA-----SNS------EYGTTILNTIKEG   65 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~--------------~~-----~~~------~~~~~~~~~l~~~   65 (196)
                      .++|+|-+||||||++++|+   |+.....|++..+.              ++     +++      ..|.-+-..++..
T Consensus        41 TlaiIG~NGSGKSTLakMla---Gmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~  117 (267)
T COG4167          41 TLAIIGENGSGKSTLAKMLA---GMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN  117 (267)
T ss_pred             EEEEEccCCCcHhHHHHHHh---cccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence            67899999999999999999   88877766653111              00     111      1122222223322


Q ss_pred             CCCCHHHHHHHHHHHHhcC----CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 KIVPSEVTVSLIQKEMESS----DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 ~~~~~~~~~~~i~~~l~~~----~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .....+...+.+.+.+...    +...+-..-+..+++|++++++++-..|.+ |..|.-.
T Consensus       118 T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~i-IIaDeAl  177 (267)
T COG4167         118 TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKI-IIADEAL  177 (267)
T ss_pred             ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcE-EEehhhh
Confidence            3333444455566666532    222333444556799999999999889998 4455544

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.82  E-value=2.4e-07  Score=63.76  Aligned_cols=160  Identities=19%  Similarity=0.238  Sum_probs=85.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC---ceechhHHHHHHHhcCCh-h----hHHHHHHhhcCCCCCHHHH-------H
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL---THLSAGELLRREIASNSE-Y----GTTILNTIKEGKIVPSEVT-------V   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~---~~i~~~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~-------~   74 (196)
                      .+|.++|||||||-|+.......+..   .++.- .++.+.-..+.+ +    ...+...-..|.+.-....       -
T Consensus         6 ~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvr-RvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygip   84 (192)
T COG3709           6 RLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVR-RVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGIP   84 (192)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHhccCCceEEEE-EEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccCc
Confidence            57888999999999999999988731   12211 122221111111 0    1112111122211110000       1


Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCC-cEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287           75 SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEP-DIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA  153 (196)
Q Consensus        75 ~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p-~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~  153 (196)
                      ..|...+.  .+..+++.+.-      -.+..+-...| -+++.+-++|+++.+|+.+|  +|+  +.+.+..|+..-..
T Consensus        85 ~eId~wl~--~G~vvl~NgSR------a~Lp~arrry~~Llvv~ita~p~VLaqRL~~R--GRE--s~eeI~aRL~R~a~  152 (192)
T COG3709          85 AEIDLWLA--AGDVVLVNGSR------AVLPQARRRYPQLLVVCITASPEVLAQRLAER--GRE--SREEILARLARAAR  152 (192)
T ss_pred             hhHHHHHh--CCCEEEEeccH------hhhHHHHHhhhcceeEEEecCHHHHHHHHHHh--ccC--CHHHHHHHHHhhcc
Confidence            12333444  24555555432      11211111122 34588999999999999999  443  55665555432222


Q ss_pred             chHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          154 LNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      .       ......+..||+++..+..-+.+...+.
T Consensus       153 ~-------~~~~~dv~~idNsG~l~~ag~~ll~~l~  181 (192)
T COG3709         153 Y-------TAGPGDVTTIDNSGELEDAGERLLALLH  181 (192)
T ss_pred             c-------ccCCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence            2       1236688899999999988777666654

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.82  E-value=1.7e-08  Score=75.06  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=28.2

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ...++.++.|++.+++++...|++ ++||+|+..
T Consensus       143 ~~~LS~G~~qrv~laral~~~p~l-llLDEPt~~  175 (228)
T cd03257         143 PHELSGGQRQRVAIARALALNPKL-LIADEPTSA  175 (228)
T ss_pred             chhcCHHHHHHHHHHHHHhcCCCE-EEecCCCCC
Confidence            345777899999999999999998 779999943

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.82  E-value=6.4e-09  Score=78.53  Aligned_cols=30  Identities=23%  Similarity=0.520  Sum_probs=26.2

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..++.++.|++.+++++...|++ ++||+|+
T Consensus       148 ~~LS~G~~qrv~laral~~~p~l-lllDEP~  177 (253)
T PRK14267        148 SNLSGGQRQRLVIARALAMKPKI-LLMDEPT  177 (253)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            44667799999999999999998 7799998

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.81  E-value=8.2e-09  Score=72.90  Aligned_cols=111  Identities=20%  Similarity=0.275  Sum_probs=61.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCChhhHH-----HHHHhhcCC--
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSEYGTT-----ILNTIKEGK--   66 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~-----~~~~l~~~~--   66 (196)
                      ++.|+|||||||||+.++|....   ..+.|.+                 +|+.+....+....     ..++.....  
T Consensus        30 f~fl~GpSGAGKSTllkLi~~~e---~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v  106 (223)
T COG2884          30 FVFLTGPSGAGKSTLLKLIYGEE---RPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV  106 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhh---cCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence            45569999999999999998543   3332222                 23333322221111     111111111  


Q ss_pred             -CCCHHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           67 -IVPSEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        67 -~~~~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                       -.+.......+.+.++..+.   ....=+.++.+++|++++++++-..|.+ ++-|+|+..+
T Consensus       107 ~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~v-LlADEPTGNL  168 (223)
T COG2884         107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAV-LLADEPTGNL  168 (223)
T ss_pred             cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCe-EeecCCCCCC
Confidence             11223334444455553222   1222333556799999999999999999 7799998443

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.81  E-value=2.5e-08  Score=75.61  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=27.5

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...++.++.|++.+++++...|++ ++||+|+.
T Consensus       154 ~~~LS~Gq~qrv~laral~~~p~l-llLDEPt~  185 (260)
T PRK10744        154 GYSLSGGQQQRLCIARGIAIRPEV-LLLDEPCS  185 (260)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCE-EEEcCCCc
Confidence            345777899999999999999998 77999993

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.81  E-value=1e-08  Score=76.09  Aligned_cols=110  Identities=19%  Similarity=0.244  Sum_probs=59.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh----hHHHHHHhhcC----CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY----GTTILNTIKEG----KI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~----~~~~~~~l~~~----~~   67 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              +..+....+.    ...+.+++...    ..
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~  110 (225)
T PRK10247         34 EFKLITGPSGCGKSTLLKIVA---SLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQ  110 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCC
Confidence            478999999999999999999   65444433221              1111111110    11233333211    00


Q ss_pred             CCHHHHHHHHHHHHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           68 VPSEVTVSLIQKEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        68 ~~~~~~~~~i~~~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      .........+.+.+.... ....-+..++.++.+++.+++++...|++ ++||+|+.
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~  166 (225)
T PRK10247        111 QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV-LLLDEITS  166 (225)
T ss_pred             ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence            001111112222222211 00111344667799999999999999999 77999993

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.81  E-value=5.8e-09  Score=87.18  Aligned_cols=109  Identities=21%  Similarity=0.279  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCC------hhhHHHHHHhhcCCC---CC-HHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNS------EYGTTILNTIKEGKI---VP-SEVTVSL   76 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~------~~~~~~~~~l~~~~~---~~-~~~~~~~   76 (196)
                      -+++|.|++||||||++++|+   |....+.|.+....   +....      .......+.+..+..   .. .......
T Consensus       349 e~~~l~G~NGsGKSTLl~~l~---G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  425 (552)
T TIGR03719       349 GIVGVIGPNGAGKSTLFRMIT---GQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA  425 (552)
T ss_pred             CEEEEECCCCCCHHHHHHHHc---CCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH
Confidence            478999999999999999999   76554444432110   01001      111233444332211   11 1111122


Q ss_pred             HHHHHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           77 IQKEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        77 i~~~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +...+.... ....-+..++.++.+++.++.++...|++ ++||+|+
T Consensus       426 ~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l-llLDEPt  471 (552)
T TIGR03719       426 YVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV-LLLDEPT  471 (552)
T ss_pred             HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE-EEEeCCC
Confidence            223332211 11122456778899999999999999999 7799999

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.81  E-value=2.3e-08  Score=84.06  Aligned_cols=110  Identities=18%  Similarity=0.338  Sum_probs=65.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|.|++||||||+++.|...+   ..+.|.+              +++.....++    ...++++++..+.+ ..+
T Consensus       367 e~i~IvG~sGsGKSTLlklL~gl~---~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~  443 (576)
T TIGR02204       367 ETVALVGPSGAGKSTLFQLLLRFY---DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATD  443 (576)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc---CCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCH
Confidence            478999999999999999999554   3322222              2222232222    23346777765543 233


Q ss_pred             HHHHHHHH-----HHHhcC--CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           71 EVTVSLIQ-----KEMESS--DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        71 ~~~~~~i~-----~~l~~~--~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      +.....+.     +.+...  +.+..+-+   .++.++.|++.+++++...|++ ++||+|+.
T Consensus       444 ~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~i-lilDEpts  505 (576)
T TIGR02204       444 EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI-LLLDEATS  505 (576)
T ss_pred             HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCe-EEEeCccc
Confidence            33322211     112211  11223322   2566799999999999999998 77999983

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.81  E-value=1.5e-08  Score=76.52  Aligned_cols=30  Identities=27%  Similarity=0.608  Sum_probs=26.4

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..++.++.|++.+++++...|++ ++||+|+
T Consensus       148 ~~LSgGq~qrv~laral~~~p~l-lllDEPt  177 (253)
T PRK14242        148 LGLSGGQQQRLCIARALAVEPEV-LLMDEPA  177 (253)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            34667799999999999999998 7799999

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.81  E-value=1.2e-08  Score=77.00  Aligned_cols=32  Identities=31%  Similarity=0.552  Sum_probs=27.2

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...++.++.|++.+++++...|++ ++||+|+.
T Consensus       137 ~~~LS~G~~qrv~laral~~~p~i-lllDEPts  168 (255)
T cd03236         137 IDQLSGGELQRVAIAAALARDADF-YFFDEPSS  168 (255)
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCE-EEEECCCC
Confidence            345777899999999999999998 77999993

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.80  E-value=9.6e-10  Score=80.38  Aligned_cols=111  Identities=21%  Similarity=0.224  Sum_probs=64.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcCCh----hhHHHHHHhhcCCCCCHHHHHHH-----HHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IASNSE----YGTTILNTIKEGKIVPSEVTVSL-----IQK   79 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~-----i~~   79 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.... +....+    ...++.+++..............     +.+
T Consensus        32 ~~~~i~G~nG~GKSTLl~~i~---G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~  108 (204)
T cd03250          32 ELVAIVGPVGSGKSSLLSALL---GELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEP  108 (204)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHH
Confidence            488999999999999999999   77666666543221 111000    11234455544322222211111     111


Q ss_pred             HHhcCC-C-CcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           80 EMESSD-S-KKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        80 ~l~~~~-~-~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .+.... + ...   -...++.++.|++.+++++...|++ +++|+|+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l-lllDEP~~~  157 (204)
T cd03250         109 DLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI-YLLDDPLSA  157 (204)
T ss_pred             HHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcccc
Confidence            222111 1 111   1234667799999999999999999 779999844

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.80  E-value=1.9e-09  Score=77.39  Aligned_cols=100  Identities=19%  Similarity=0.248  Sum_probs=57.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC-hhhHHHHHHhh---cC----CCCCHHHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS-EYGTTILNTIK---EG----KIVPSEVTVSLIQKEM   81 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~---~~----~~~~~~~~~~~i~~~l   81 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+......... ......+..+.   ..    ...+.....+.+    
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l----   99 (182)
T cd03215          27 EIVGIAGLVGNGQTELAEALF---GLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI----   99 (182)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH----
Confidence            478999999999999999999   7766665544321100000 00001111000   00    001101111111    


Q ss_pred             hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ....       .++.++.+++.++.++...|++ ++||+|+..
T Consensus       100 ~~~~-------~LS~G~~qrl~la~al~~~p~l-lllDEP~~~  134 (182)
T cd03215         100 ALSS-------LLSGGNQQKVVLARWLARDPRV-LILDEPTRG  134 (182)
T ss_pred             HHHh-------hcCHHHHHHHHHHHHHccCCCE-EEECCCCcC
Confidence            1000       1788899999999999999998 779999944

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.80  E-value=1.3e-08  Score=84.63  Aligned_cols=31  Identities=29%  Similarity=0.542  Sum_probs=27.2

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       425 ~~~LSgGq~qrv~laral~~~p~l-LllDEPt  455 (520)
T TIGR03269       425 PDELSEGERHRVALAQVLIKEPRI-VILDEPT  455 (520)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            445777899999999999999998 7899999

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.80  E-value=3.4e-08  Score=70.18  Aligned_cols=120  Identities=17%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHH--HhcCC---------------hhhHHHHHHhhcCCCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRRE--IASNS---------------EYGTTILNTIKEGKIVP   69 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~--~~~~~---------------~~~~~~~~~l~~~~~~~   69 (196)
                      +..+|+|.|.+.|||||+|+.|.+.| |...|+.|+.+.-.  ++...               .....+.-.+......+
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~   82 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP   82 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence            45799999999999999999999999 67788888876322  11110               01222333333333332


Q ss_pred             HH--HHH--HHHHHHHh---c--CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           70 SE--VTV--SLIQKEME---S--SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        70 ~~--~~~--~~i~~~l~---~--~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      +.  ...  ..+.++..   .  .....+++|||-.....-      .....|..|++-.|.+++.+|...|-
T Consensus        83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p------~~~~~d~~im~~~~y~~~krRr~~Rt  149 (225)
T KOG3308|consen   83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKP------QVDLFDRIIMLTLDYETCKRRREART  149 (225)
T ss_pred             hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecch------hhhhhhhheeeeccHHHHHHhhcccc
Confidence            21  111  11111111   1  123568899875321100      01135667899999999999999884

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.79  E-value=1.4e-08  Score=74.88  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH-----------HHHhcCCh-----hhHHHHHHhhcCC---CCCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR-----------REIASNSE-----YGTTILNTIKEGK---IVPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~-----------~~~~~~~~-----~~~~~~~~l~~~~---~~~~   70 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+..           +......+     ....+.+++....   ....
T Consensus        38 e~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~  114 (214)
T PRK13543         38 EALLVQGDNGAGKTTLLRVLA---GLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRA  114 (214)
T ss_pred             CEEEEEcCCCCCHHHHHHHHh---CCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcH
Confidence            478999999999999999999   654444333211           11111100     0112222221100   0111


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ......+.+.+........-+..++.++.+++.+++++...|++ ++||+|+..+
T Consensus       115 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt~~L  168 (214)
T PRK13543        115 KQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL-WLLDEPYANL  168 (214)
T ss_pred             HHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcccC
Confidence            11111122222221111112345777899999999999999998 7799999443

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.79  E-value=4e-09  Score=86.99  Aligned_cols=109  Identities=16%  Similarity=0.267  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCCC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGKI--   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~~--   67 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.               ++.+....+     ....+.+++..+..  
T Consensus        25 e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~  101 (491)
T PRK10982         25 SIHALMGENGAGKSTLLKCLF---GIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPT  101 (491)
T ss_pred             cEEEEECCCCCCHHHHHHHHc---CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccc
Confidence            478999999999999999999   65544433321               111111111     11123343332110  


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           68 ----VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        68 ----~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                          .........+.+.+....-.   ..-+..++.++.|++.+++++...|++ ++||+|+
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l-llLDEPt  162 (491)
T PRK10982        102 KGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI-VIMDEPT  162 (491)
T ss_pred             cccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCC
Confidence                11122222333333322111   112455777899999999999999998 8899999

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.79  E-value=2.5e-08  Score=75.34  Aligned_cols=31  Identities=23%  Similarity=0.444  Sum_probs=27.1

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       146 ~~~LSgG~~qrv~laral~~~p~v-lllDEP~  176 (253)
T TIGR02323       146 PRAFSGGMQQRLQIARNLVTRPRL-VFMDEPT  176 (253)
T ss_pred             chhcCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            445677899999999999999999 7799999

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.79  E-value=1.9e-09  Score=78.25  Aligned_cols=100  Identities=18%  Similarity=0.312  Sum_probs=57.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc--eechhHHHHHHHhcCChhhHHHHH---HhhcC-CCCCHHHHHHHHHHHHhc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT--HLSAGELLRREIASNSEYGTTILN---TIKEG-KIVPSEVTVSLIQKEMES   83 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~~~~~~~i~~~l~~   83 (196)
                      -+++|.|++||||||+++.|+   |..  ..+.|.+........ .  ...+.   ++... ...+.....+.+.-... 
T Consensus        36 e~~~l~G~nGsGKStLl~~i~---Gl~~~~~~~G~i~~~g~~~~-~--~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-  108 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALA---GRRTGLGVSGEVLINGRPLD-K--RSFRKIIGYVPQDDILHPTLTVRETLMFAAK-  108 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCCceEEEECCEeCc-h--HhhhheEEEccCcccCCCCCcHHHHHHHHHH-
Confidence            478999999999999999999   776  555554321110000 0  00110   01001 11111111111111000 


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                             +..++.++.+++.+++++...|++ +++|+|+..
T Consensus       109 -------~~~LS~G~~qrv~laral~~~p~i-lllDEP~~~  141 (194)
T cd03213         109 -------LRGLSGGERKRVSIALELVSNPSL-LFLDEPTSG  141 (194)
T ss_pred             -------hccCCHHHHHHHHHHHHHHcCCCE-EEEeCCCcC
Confidence                   116778899999999999999998 779999944

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=2.8e-08  Score=76.27  Aligned_cols=109  Identities=20%  Similarity=0.326  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceech---hHH--------------HHHHHhcCChh------hHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA---GEL--------------LRREIASNSEY------GTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~---~~~--------------~~~~~~~~~~~------~~~~~~~l~~~-   65 (196)
                      -+++|.|++||||||++++|+   |+...+.   |.+              .++.+....+.      ..++.+++..+ 
T Consensus        34 e~~~I~G~nGaGKSTLl~~l~---G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~  110 (282)
T PRK13640         34 SWTALIGHNGSGKSTISKLIN---GLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGL  110 (282)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhH
Confidence            488999999999999999999   5543332   211              11111111111      11234444321 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 --KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 --~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                        .........+.+.+.+...+...   .-...++.++.|++.++.++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~l-lllDEPt  171 (282)
T PRK13640        111 ENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKI-IILDEST  171 (282)
T ss_pred             HhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence              11122222223333443322111   12445777899999999999999999 7799999

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.78  E-value=2.1e-08  Score=76.35  Aligned_cols=32  Identities=19%  Similarity=0.442  Sum_probs=27.4

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      +..++.++.|++.+++++...|++ ++||+|+.
T Consensus       162 ~~~LSgGq~qrl~laral~~~p~l-llLDEPt~  193 (268)
T PRK14248        162 ALSLSGGQQQRLCIARTLAMKPAV-LLLDEPAS  193 (268)
T ss_pred             cccCCHHHHHHHHHHHHHhCCCCE-EEEcCCCc
Confidence            345777799999999999999998 77999993

>PRK13409 putative ATPase RIL; Provisional

Probab=98.78  E-value=4.5e-09  Score=88.13  Aligned_cols=109  Identities=19%  Similarity=0.248  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-HHhcCC-----hhhHHHHHHhhcCC-CCCHHHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-EIASNS-----EYGTTILNTIKEGK-IVPSEVTVSLIQKEME   82 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-~~~~~~-----~~~~~~~~~l~~~~-~~~~~~~~~~i~~~l~   82 (196)
                      -+++|.|++||||||++++|+   |....+.|.+... .+...+     ....++.+++..+. ..........+.+.+.
T Consensus       366 eiv~l~G~NGsGKSTLlk~L~---Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~  442 (590)
T PRK13409        366 EVIGIVGPNGIGKTTFAKLLA---GVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ  442 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence            488999999999999999999   7655554443211 011011     11122333332211 0111111222222332


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .......-+..++.++.|+++++.++...|++ ++||+|+
T Consensus       443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l-lLLDEPt  481 (590)
T PRK13409        443 LERLLDKNVKDLSGGELQRVAIAACLSRDADL-YLLDEPS  481 (590)
T ss_pred             CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            22111122455778899999999999999999 7799999

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.78  E-value=2.4e-08  Score=83.86  Aligned_cols=109  Identities=19%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|.|++||||||+++.|.   |....+.|.+              +++.....++    ...++++++..+.. ..+
T Consensus       342 ~~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~  418 (569)
T PRK10789        342 QMLGICGPTGSGKSTLLSLIQ---RHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQ  418 (569)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCH
Confidence            578999999999999999999   4443333322              1222222221    12356777766533 333


Q ss_pred             HHHHHHHHH-----HHh-cCCC-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQK-----EME-SSDS-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~~-----~l~-~~~~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +........     .+. ...+ +..+-   ..++.++.|++.+++++..+|++ ++||+|+
T Consensus       419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i-lllDEpt  479 (569)
T PRK10789        419 QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI-LILDDAL  479 (569)
T ss_pred             HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEECcc
Confidence            332222111     111 1111 22222   23666799999999999999999 7799998

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.78  E-value=2.3e-08  Score=74.59  Aligned_cols=109  Identities=22%  Similarity=0.268  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~-~~   70 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              ++.+....+    ....+.+++...... ..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~  105 (234)
T cd03251          29 ETVALVGPSGSGKSTLVNLIP---RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATR  105 (234)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---ccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCH
Confidence            478999999999999999999   65544444321              111111111    112344444332111 11


Q ss_pred             HHHHH-----HHHHHHhcC--CCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVS-----LIQKEMESS--DSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~-----~i~~~l~~~--~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .....     .+.+.+...  .....   -...++.++.|++.+++++...|++ ++||+|+
T Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-llLDEP~  166 (234)
T cd03251         106 EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI-LILDEAT  166 (234)
T ss_pred             HHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence            11111     112222111  11111   1334667799999999999999998 7799999

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.78  E-value=1.4e-08  Score=84.51  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=28.1

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       153 ~~~LSgGq~qrv~lA~aL~~~p~l-LlLDEPt  183 (530)
T PRK15064        153 MSEVAPGWKLRVLLAQALFSNPDI-LLLDEPT  183 (530)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            566888999999999999999998 8899999

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.78  E-value=3.2e-09  Score=77.49  Aligned_cols=109  Identities=18%  Similarity=0.324  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCce---echhHHHHHHHhcCChhhHHHHHHh---hc-CCCCCHHHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTH---LSAGELLRREIASNSEYGTTILNTI---KE-GKIVPSEVTVSLIQKEME   82 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~l---~~-~~~~~~~~~~~~i~~~l~   82 (196)
                      -+++|.|++||||||+++.|+   |...   .+.|++........ ......+..+   .. ....+...+.+.+.-...
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~---G~~~~~~~~~G~i~i~g~~~~-~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~  109 (202)
T cd03233          34 EMVLVLGRPGSGCSTLLKALA---NRTEGNVSVEGDIHYNGIPYK-EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR  109 (202)
T ss_pred             cEEEEECCCCCCHHHHHHHhc---ccCCCCCCcceEEEECCEECc-cchhhhcceEEEEecccccCCCCcHHHHHhhhhh
Confidence            488999999999999999999   7654   44554321110000 0000111101   00 011111111222111111


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      .. ... -+..++.++.|++.++.++...|++ ++||+|+..+
T Consensus       110 ~~-~~~-~~~~LS~Ge~qrl~laral~~~p~l-lllDEPt~~L  149 (202)
T cd03233         110 CK-GNE-FVRGISGGERKRVSIAEALVSRASV-LCWDNSTRGL  149 (202)
T ss_pred             hc-ccc-chhhCCHHHHHHHHHHHHHhhCCCE-EEEcCCCccC
Confidence            10 111 2455778899999999999999998 8899999543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.77  E-value=4.7e-09  Score=86.75  Aligned_cols=31  Identities=16%  Similarity=0.410  Sum_probs=28.0

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       394 ~~~LSgGq~qrl~la~al~~~p~l-llLDEPt  424 (501)
T PRK11288        394 IMNLSGGNQQKAILGRWLSEDMKV-ILLDEPT  424 (501)
T ss_pred             cccCCHHHHHHHHHHHHHccCCCE-EEEcCCC
Confidence            556888899999999999999999 7899999

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.77  E-value=1.9e-08  Score=75.97  Aligned_cols=31  Identities=16%  Similarity=0.472  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       146 ~~~LS~G~~qrl~laral~~~p~l-lllDEP~  176 (252)
T PRK14256        146 AMELSGGQQQRLCIARTIAVKPEV-ILMDEPA  176 (252)
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            445777899999999999999998 7799999

>PTZ00243 ABC transporter; Provisional

Probab=98.77  E-value=4.1e-09  Score=96.80  Aligned_cols=112  Identities=15%  Similarity=0.239  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIVPSEVTV   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~   74 (196)
                      -.|+|+|++||||||+++.|..-+    |-..++.-++       +|+.+...++    +..++++++.......++.+.
T Consensus      1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243       1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence            478999999999999999999554    2222222111       3444443333    233578888654444444333


Q ss_pred             HHHHH-----HHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCC-CcEEEEeecCh
Q 029287           75 SLIQK-----EMES-SD-SKKFLID---GFPRSEENRAAFERIMGAE-PDIVLFFDCPE  122 (196)
Q Consensus        75 ~~i~~-----~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~-p~~~i~ld~~~  122 (196)
                      ..+..     .+.. .. .+..+-+   .++.+++|++.+++++..+ |.+ ++||+++
T Consensus      1417 ~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~I-LlLDEAT 1474 (1560)
T PTZ00243       1417 AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF-ILMDEAT 1474 (1560)
T ss_pred             HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCE-EEEeCCC
Confidence            33222     1111 11 1222322   3677899999999999875 677 7899988

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.77  E-value=6.8e-09  Score=79.25  Aligned_cols=109  Identities=17%  Similarity=0.294  Sum_probs=59.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------HH----HHhcCChh-------hHHHHHHhhcCC-----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------RR----EIASNSEY-------GTTILNTIKEGK-----   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------~~----~~~~~~~~-------~~~~~~~l~~~~-----   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.       ..    .+....+.       ...+.+.+..+.     
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~  110 (272)
T PRK15056         34 SIAALVGVNGSGKSTLFKALM---GFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMG  110 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccc
Confidence            478999999999999999999   66544433321       10    01111110       111233322110     


Q ss_pred             C--CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 I--VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~--~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .  .........+...+...+-..   --+..++.++.|++.+++++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l-lllDEPt  170 (272)
T PRK15056        111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV-ILLDEPF  170 (272)
T ss_pred             cccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            0  011111122223333211111   12345777899999999999999998 7799999

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=7e-09  Score=85.84  Aligned_cols=31  Identities=23%  Similarity=0.463  Sum_probs=28.1

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       403 ~~~LSgG~kqrv~lA~al~~~p~l-llLDEPt  433 (506)
T PRK13549        403 IARLSGGNQQKAVLAKCLLLNPKI-LILDEPT  433 (506)
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCE-EEEcCCC
Confidence            566888899999999999999998 8899999

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.76  E-value=8.5e-07  Score=67.00  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .+++|+|.|||||||.++.|-+. |+.-++
T Consensus         2 ~~vIiTGlSGaGKs~Al~~lED~-Gy~cvD   30 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRALEDL-GYYCVD   30 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHHHhc-CeeEEc
Confidence            57888999999999999988854 655544

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.76  E-value=1.8e-08  Score=73.86  Aligned_cols=103  Identities=15%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~~~~   71 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              ++.+....+    ....+.+++.........
T Consensus        35 ~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~  111 (207)
T cd03369          35 EKIGIVGRTGAGKSTLILALF---RFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDE  111 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHH
Confidence            478999999999999999999   55433333221              111111111    011344444321111211


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                          .+.+.+..   ... ...++.++.|++.+++++...|++ ++||+|+.-
T Consensus       112 ----~~~~~l~~---~~~-~~~LS~G~~qrv~laral~~~p~l-lllDEP~~~  155 (207)
T cd03369         112 ----EIYGALRV---SEG-GLNLSQGQRQLLCLARALLKRPRV-LVLDEATAS  155 (207)
T ss_pred             ----HHHHHhhc---cCC-CCcCCHHHHHHHHHHHHHhhCCCE-EEEeCCccc
Confidence                12222321   111 345677799999999999999999 779999843

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=2.6e-08  Score=75.33  Aligned_cols=109  Identities=19%  Similarity=0.290  Sum_probs=61.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE-----YGTTILNTIKEGKI---   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~-----~~~~~~~~l~~~~~---   67 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+              .++......+     ....+.+++..+..   
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~  105 (255)
T PRK11231         29 KITALIGPNGCGKSTLLKCFA---RLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWL  105 (255)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhh
Confidence            478999999999999999999   6544333321              1111111111     11223444432210   


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           68 ----VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        68 ----~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                          .........+...+...+-.   ..-...++.++.|++.++.++...|++ ++||+|+
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEP~  166 (255)
T PRK11231        106 SLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV-VLLDEPT  166 (255)
T ss_pred             hhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence                00111122223333321111   112445777899999999999999999 7799999

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.76  E-value=2.7e-08  Score=75.02  Aligned_cols=32  Identities=19%  Similarity=0.466  Sum_probs=27.2

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...++.++.|++.++.++...|++ ++||+|+.
T Consensus       145 ~~~LS~G~~qrv~laral~~~p~l-lllDEP~~  176 (251)
T PRK14270        145 ALKLSGGQQQRLCIARTIAVKPDV-ILMDEPTS  176 (251)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence            345677799999999999999998 77999993

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.76  E-value=7.7e-09  Score=85.49  Aligned_cols=109  Identities=19%  Similarity=0.259  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------------HHHhcCCh-----hhHHHHHHhhcCCC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------------REIASNSE-----YGTTILNTIKEGKI--   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------------~~~~~~~~-----~~~~~~~~l~~~~~--   67 (196)
                      -+++|.|++||||||++++|+   |....+.|.+..               +.+....+     ......+++..+..  
T Consensus        31 e~~~l~G~NGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  107 (501)
T PRK10762         31 RVMALVGENGAGKSTMMKVLT---GIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFV  107 (501)
T ss_pred             eEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccc
Confidence            588999999999999999999   665444443211               11111111     11123444432211  


Q ss_pred             -----CCHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           68 -----VPSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        68 -----~~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                           .........+.+.+..   ......-+..++.++.|++.++.++...|++ ++||+|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt  169 (501)
T PRK10762        108 NRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV-IIMDEPT  169 (501)
T ss_pred             cccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence                 1111111223333332   2111122455777899999999999999999 8899999

>PLN03073 ABC transporter F family; Provisional

Probab=98.75  E-value=1.4e-08  Score=86.86  Aligned_cols=108  Identities=22%  Similarity=0.265  Sum_probs=59.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCCh-------hhHH-HHHHhhcCCCCCHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNSE-------YGTT-ILNTIKEGKIVPSEVTVSLIQ   78 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~~-------~~~~-~~~~l~~~~~~~~~~~~~~i~   78 (196)
                      -+++|+|++||||||++++|+   |....+.|.+....   +....+       .... +.............. ...+.
T Consensus       536 e~i~LvG~NGsGKSTLLk~L~---Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~L  611 (718)
T PLN03073        536 SRIAMVGPNGIGKSTILKLIS---GELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK-LRAHL  611 (718)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHH-HHHHH
Confidence            378999999999999999999   76555544442110   000000       0000 000000000111111 12222


Q ss_pred             HHHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           79 KEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        79 ~~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..+.... ....-+..++.++.|++.++.++...|++ ++||+|+
T Consensus       612 ~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~l-LLLDEPT  655 (718)
T PLN03073        612 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI-LLLDEPS  655 (718)
T ss_pred             HHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            2222211 01112455777899999999999999999 7899999

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.75  E-value=1.2e-08  Score=76.22  Aligned_cols=109  Identities=21%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh----hHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY----GTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~----~~~~~~~l~~~~~-~~~   70 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              ++.+....+.    ...+.+++..... ...
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~  105 (237)
T cd03252          29 EVVGIVGRSGSGKSTLTKLIQ---RFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSM  105 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCH
Confidence            478999999999999999999   65544433221              1111111111    1234444433211 111


Q ss_pred             HHHHHH-----HHHHHhcC--CCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSL-----IQKEMESS--DSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~-----i~~~l~~~--~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ......     +.+.+...  ....+   -+..++.++.|++.+++++...|++ ++||+|+
T Consensus       106 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEP~  166 (237)
T cd03252         106 ERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI-LIFDEAT  166 (237)
T ss_pred             HHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE-EEEeCCc
Confidence            111111     11111110  00111   1345667799999999999999998 7799999

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.75  E-value=3.3e-09  Score=76.81  Aligned_cols=99  Identities=19%  Similarity=0.325  Sum_probs=55.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCce--echhHHHHHHHhcCChhhHHHHHHh---hc-CCCCCHHHHHHHHHHHHhc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTH--LSAGELLRREIASNSEYGTTILNTI---KE-GKIVPSEVTVSLIQKEMES   83 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~l---~~-~~~~~~~~~~~~i~~~l~~   83 (196)
                      -+++|+|++||||||+++.|+   |...  .+.|++....    .+.....+..+   .. ....+...+.+.+.-... 
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~---G~~~~~~~~G~i~~~g----~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-  105 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLA---GRKTAGVITGEILING----RPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSAL-  105 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCcCCCcceEEEECC----EehHHHhhhceEEecccCccccCCcHHHHHHHHHH-
Confidence            488999999999999999999   6431  2333322100    00000011101   00 011111111111111000 


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                             +..++.++.+++.+++++...|++ +++|+|+..
T Consensus       106 -------~~~LSgGe~qrv~la~al~~~p~v-lllDEP~~~  138 (192)
T cd03232         106 -------LRGLSVEQRKRLTIGVELAAKPSI-LFLDEPTSG  138 (192)
T ss_pred             -------HhcCCHHHhHHHHHHHHHhcCCcE-EEEeCCCcC
Confidence                   116888899999999999999998 779999844

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.75  E-value=8.5e-08  Score=71.93  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLR   45 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~   45 (196)
                      +|+|+|+|||||||+++.|.+.++     ..+++.|.+.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            589999999999999999998874     34566666654

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.1e-08  Score=82.79  Aligned_cols=144  Identities=15%  Similarity=0.239  Sum_probs=89.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC--C-------------h-----hhHHHHHHhhcC----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASN--S-------------E-----YGTTILNTIKEG----   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~--~-------------~-----~~~~~~~~l~~~----   65 (196)
                      -+.+|.|-+|+||||+.+.|+   |....+.|++..+.....  +             +     ....+.+++.-|    
T Consensus        35 EV~aL~GeNGAGKSTLmKiLs---Gv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~  111 (500)
T COG1129          35 EVHALLGENGAGKSTLMKILS---GVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPT  111 (500)
T ss_pred             eEEEEecCCCCCHHHHHHHHh---CcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccc
Confidence            478999999999999999999   888777776642210000  0             0     011123333222    


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH-----------HHHH
Q 029287           66 ---KIVPSEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE-----------MVNR  128 (196)
Q Consensus        66 ---~~~~~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~-----------~~~R  128 (196)
                         ..++.........+.+.....   ....+..++.++.|.+++++++...+.+ ++||+|+..           .++|
T Consensus       112 ~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl-lIlDEPTaaLt~~E~~~Lf~~ir~  190 (500)
T COG1129         112 RRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARV-LILDEPTAALTVKETERLFDLIRR  190 (500)
T ss_pred             cCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccCCHHHHHHHHHHHHH
Confidence               223444444444444442211   2223556777899999999999888887 779999932           2233


Q ss_pred             HhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE
Q 029287          129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT  170 (196)
Q Consensus       129 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (196)
                      ++.+       ....      .|.+|....+..+|++..|+.
T Consensus       191 Lk~~-------Gv~i------i~ISHrl~Ei~~i~DritVlR  219 (500)
T COG1129         191 LKAQ-------GVAI------IYISHRLDEVFEIADRITVLR  219 (500)
T ss_pred             HHhC-------CCEE------EEEcCcHHHHHHhcCEEEEEe
Confidence            3322       1222      788898888888898766654

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.75  E-value=1.6e-08  Score=75.50  Aligned_cols=109  Identities=24%  Similarity=0.319  Sum_probs=60.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              ++......+    ...++.+++..+.. ...
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~  104 (236)
T cd03253          28 KKVAIVGPSGSGKSTILRLLF---RFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATD  104 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCH
Confidence            488999999999999999999   66544444221              111111111    11234444433211 111


Q ss_pred             HHHHH-----HHHHHHhcCC--CCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVS-----LIQKEMESSD--SKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~-----~i~~~l~~~~--~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .....     .+.+.+...+  ....   -...++.++.+++.++.++...|++ ++||+|+
T Consensus       105 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l-lllDEP~  165 (236)
T cd03253         105 EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI-LLLDEAT  165 (236)
T ss_pred             HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            11111     0111111110  0110   0235677799999999999999999 7799999

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.75  E-value=3.6e-08  Score=72.94  Aligned_cols=111  Identities=21%  Similarity=0.253  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChh-----hHHHHHHhhc---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEY-----GTTILNTIKE---   64 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~-----~~~~~~~l~~---   64 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.                 ++.+....+.     ...+.+++..   
T Consensus        32 ~~~~I~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~  108 (220)
T TIGR02982        32 EIVILTGPSGSGKTTLLTLIG---GLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALE  108 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHH
Confidence            488999999999999999999   65444333221                 1111111111     0112222211   


Q ss_pred             -CCCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           65 -GKIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        65 -~~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                       ............+.+.++..+..   ......++.++.|+..+++++...|++ +++|+|...
T Consensus       109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~i-lllDEP~~~  171 (220)
T TIGR02982       109 LQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKL-VLADEPTAA  171 (220)
T ss_pred             hccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCCCc
Confidence             00112222222333333322211   112445777899999999999999998 779999943

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.75  E-value=3.9e-08  Score=74.30  Aligned_cols=31  Identities=19%  Similarity=0.487  Sum_probs=27.0

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       148 ~~~LSgG~~qrv~laral~~~p~l-llLDEPt  178 (254)
T PRK14273        148 ALSLSGGQQQRLCIARTLAIEPNV-ILMDEPT  178 (254)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence            345777899999999999999998 7799999

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.75  E-value=1.7e-08  Score=78.99  Aligned_cols=82  Identities=16%  Similarity=0.331  Sum_probs=47.8

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHH----HHHhhccCCCCCCcHHHH-HHHHHHHHhchHhHHHHHHhcC
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV----NRVLNRNEGRVDDNIDTV-RKRLQVFKALNLPVINYYARRG  166 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~----~Rl~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  166 (196)
                      ..++.++.|++.+++++...|++ ++||+|..-+.    +.+.+.        ...+ ++......+|....+..++++.
T Consensus       224 ~~LSgGqkqRl~LARAl~~~p~I-lLLDEPts~LD~~~~~~i~~~--------i~~l~~~~Tii~iTH~l~~i~~~~Dri  294 (329)
T PRK14257        224 NALSGGQQQRLCIARAIALEPEV-LLMDEPTSALDPIATAKIEEL--------ILELKKKYSIIIVTHSMAQAQRISDET  294 (329)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCE-EEEeCCcccCCHHHHHHHHHH--------HHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence            34667799999999999999998 77999982221    111111        0000 0011134456555555556644


Q ss_pred             cEEE---EeCCCCHhHHHH
Q 029287          167 KLYT---INAVGTVDEIFE  182 (196)
Q Consensus       167 ~~~~---I~~~~~~~~v~~  182 (196)
                      .++.   |...+++++++.
T Consensus       295 ivl~~G~i~e~g~~~~l~~  313 (329)
T PRK14257        295 VFFYQGWIEEAGETKTIFI  313 (329)
T ss_pred             EEEECCEEEEeCCHHHHhc
Confidence            3332   445678888764

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.75  E-value=3.9e-08  Score=82.32  Aligned_cols=109  Identities=20%  Similarity=0.267  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCCh------hhHHHHHHhhcCCC---C-CHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNSE------YGTTILNTIKEGKI---V-PSEVTVSL   76 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~~------~~~~~~~~l~~~~~---~-~~~~~~~~   76 (196)
                      -+++|.|++||||||++++|+   |....+.|.+....   +...++      ...+..+.+..+..   . ........
T Consensus       351 e~~~l~G~NGsGKSTLl~~i~---G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  427 (556)
T PRK11819        351 GIVGIIGPNGAGKSTLFKMIT---GQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRA  427 (556)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHH
Confidence            478999999999999999999   66544444332110   011111      11123333322110   1 11111122


Q ss_pred             HHHHHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           77 IQKEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        77 i~~~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+.+.... ....-+..++.++.|++.++.++...|++ ++||+|+
T Consensus       428 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-llLDEPt  473 (556)
T PRK11819        428 YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV-LLLDEPT  473 (556)
T ss_pred             HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            223333211 11122556888899999999999999999 7799999

>COG4639 Predicted kinase [General function prediction only]

Probab=98.75  E-value=1.9e-07  Score=63.88  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=65.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      +.++++.|++||||||.++....  ....++.+++-. .++.. . +   .+........-.+.....+.+.+.  .++.
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~--~~~~lsld~~r~-~lg~~-~-~---~e~sqk~~~~~~~~l~~~l~qrl~--~Gk~   71 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFL--QNYVLSLDDLRL-LLGVS-A-S---KENSQKNDELVWDILYKQLEQRLR--RGKF   71 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCC--CcceecHHHHHH-Hhhhc-h-h---hhhccccHHHHHHHHHHHHHHHHH--cCCe
Confidence            45789999999999999886331  566777655532 21100 0 0   000000000011223334444444  4667


Q ss_pred             EEEeCCCCCHHHH---HHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287           89 FLIDGFPRSEENR---AAFERIMGAEPDIVLFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        89 ~iid~~~~~~~~~---~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r  132 (196)
                      .|+|..-....++   ..++...+.. ..+|+||+|.+.|..|...|
T Consensus        72 tiidAtn~rr~~r~~l~~La~~y~~~-~~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          72 TIIDATNLRREDRRKLIDLAKAYGYK-IYAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             EEEEcccCCHHHHHHHHHHHHHhCCe-EEEEEEeCCHHHHHHHhhcc
Confidence            7899877654444   4455555544 44599999999999997644

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.74  E-value=6.8e-08  Score=73.89  Aligned_cols=31  Identities=16%  Similarity=0.387  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       161 ~~~LSgGq~qrl~LAral~~~p~l-llLDEPt  191 (276)
T PRK14271        161 PFRLSGGQQQLLCLARTLAVNPEV-LLLDEPT  191 (276)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            345777899999999999999998 7799999

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.74  E-value=3.8e-08  Score=81.80  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=27.7

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       166 ~~~LSgGq~qrv~iA~al~~~p~l-llLDEPt  196 (520)
T TIGR03269       166 ARDLSGGEKQRVVLARQLAKEPFL-FLADEPT  196 (520)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEeeCCc
Confidence            455777899999999999999998 8899999

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.74  E-value=4.7e-08  Score=74.17  Aligned_cols=30  Identities=23%  Similarity=0.513  Sum_probs=26.4

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..++.++.|+..+++++...|++ ++||+|+
T Consensus       148 ~~LS~G~~qrv~laral~~~p~l-lllDEPt  177 (261)
T PRK14263        148 LSLSGGQQQRLCIARAIATEPEV-LLLDEPC  177 (261)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence            34677899999999999999999 7799999

>PRK13409 putative ATPase RIL; Provisional

Probab=98.74  E-value=2.3e-08  Score=83.87  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=27.6

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       210 ~~~LSgGe~qrv~ia~al~~~p~l-llLDEPt  240 (590)
T PRK13409        210 ISELSGGELQRVAIAAALLRDADF-YFFDEPT  240 (590)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence            456777899999999999999998 8899999

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.74  E-value=7.1e-09  Score=77.53  Aligned_cols=110  Identities=21%  Similarity=0.254  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCC-h-----hhHHHHHHhhcC---CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNS-E-----YGTTILNTIKEG---KI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~-~-----~~~~~~~~l~~~---~~   67 (196)
                      -+++|+|++||||||++++|+   |....+.|.+.             ++.+.... +     ......+++...   ..
T Consensus        48 e~~~i~G~NGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~  124 (236)
T cd03267          48 EIVGFIGPNGAGKTTTLKILS---GLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYD  124 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcC
Confidence            588999999999999999999   65544433221             11111111 0     011122222110   01


Q ss_pred             CCHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           68 VPSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        68 ~~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      .........+...+..   ......-+..++.++.++..++.++...|++ ++||+|+.
T Consensus       125 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-lllDEPt~  182 (236)
T cd03267         125 LPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI-LFLDEPTI  182 (236)
T ss_pred             CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCCC
Confidence            1111112222222222   1111112455778899999999999999998 77999993

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.74  E-value=3.3e-08  Score=74.57  Aligned_cols=31  Identities=19%  Similarity=0.547  Sum_probs=26.8

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       145 ~~~LS~Gq~qr~~laral~~~p~l-lllDEP~  175 (251)
T PRK14251        145 AQAFSGGQQQRICIARALAVRPKV-VLLDEPT  175 (251)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEecCCC
Confidence            345667799999999999999998 7799999

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=2.2e-08  Score=76.79  Aligned_cols=109  Identities=20%  Similarity=0.305  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChh------hHHHHHHhhcCC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEY------GTTILNTIKEGK--   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~------~~~~~~~l~~~~--   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.               ++.+....+.      ...+.+.+..+.  
T Consensus        37 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~  113 (280)
T PRK13633         37 EFLVILGRNGSGKSTIAKHMN---ALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPEN  113 (280)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhh
Confidence            478999999999999999999   65444433221               1111111111      112233332211  


Q ss_pred             -CCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 -IVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 -~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ..........+.+.+...+-.   .-....++.++.|++.++.++...|.+ ++||+|+
T Consensus       114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l-lllDEPt  172 (280)
T PRK13633        114 LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPEC-IIFDEPT  172 (280)
T ss_pred             cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence             112222222233333322211   112456777899999999999999998 7799999

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.74  E-value=2e-08  Score=75.17  Aligned_cols=109  Identities=24%  Similarity=0.306  Sum_probs=59.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~~-~~   70 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++.+....+    ....+.+++..+... ..
T Consensus        30 e~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~  106 (238)
T cd03249          30 KTVALVGSSGCGKSTVVSLLE---RFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATD  106 (238)
T ss_pred             CEEEEEeCCCCCHHHHHHHHh---ccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCH
Confidence            588999999999999999999   65443333221              111111111    112344554432211 11


Q ss_pred             HHHHH-----HHHHHHhcC--CCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVS-----LIQKEMESS--DSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~-----~i~~~l~~~--~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .....     .+.+.+...  .....   -...++.++.+++.++.++...|++ ++||+|+
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-lllDEP~  167 (238)
T cd03249         107 EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI-LLLDEAT  167 (238)
T ss_pred             HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence            11111     011111111  01111   1234666789999999999999998 7799999

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.73  E-value=8.8e-08  Score=80.73  Aligned_cols=115  Identities=21%  Similarity=0.282  Sum_probs=67.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------HHHHHhcCChh-----hHHH------HHHhhcCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------LRREIASNSEY-----GTTI------LNTIKEGKI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------~~~~~~~~~~~-----~~~~------~~~l~~~~~   67 (196)
                      -+.+|.||+||||||++.+|+-+..-.....|++           +++......+.     ..+.      ...++-+..
T Consensus        57 el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~  136 (613)
T KOG0061|consen   57 ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS  136 (613)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC
Confidence            5889999999999999999995531100111222           11111111111     1112      333333333


Q ss_pred             CCHHHH---HHHHHHHHhcCCCCcEEEe-----CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           68 VPSEVT---VSLIQKEMESSDSKKFLID-----GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        68 ~~~~~~---~~~i~~~l~~~~~~~~iid-----~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ......   .+.+...+....+..-++.     |.+.++..|+.++..+...|.+ +++|+|+.-+
T Consensus       137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i-LflDEPTSGL  201 (613)
T KOG0061|consen  137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI-LFLDEPTSGL  201 (613)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCE-EEecCCCCCc
Confidence            333333   3444444444444433443     6888899999999999989998 8899999443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.73  E-value=2.7e-08  Score=82.26  Aligned_cols=31  Identities=23%  Similarity=0.419  Sum_probs=27.7

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       393 ~~~LSgGekqrv~lA~al~~~p~l-llLDEPt  423 (501)
T PRK10762        393 IGLLSGGNQQKVAIARGLMTRPKV-LILDEPT  423 (501)
T ss_pred             hhhCCHHHHHHHHHHHHHhhCCCE-EEEcCCC
Confidence            556778899999999999999998 7899999

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.73  E-value=1.2e-07  Score=79.07  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=27.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       154 ~~~LSgGe~qrv~iAraL~~~p~l-lllDEPt  184 (529)
T PRK15134        154 PHQLSGGERQRVMIAMALLTRPEL-LIADEPT  184 (529)
T ss_pred             CcccCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            456778899999999999999998 8899999

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.73  E-value=1.7e-08  Score=93.90  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCChh-----hHHHHHHhhc---CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSEY-----GTTILNTIKE---GKIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~~-----~~~~~~~l~~---~~~~   68 (196)
                      -+++|.|++||||||+.++|+   |....+.|++.             ++.+...++.     ..+.++.+..   -...
T Consensus      1966 Ei~gLLG~NGAGKTTLlkmL~---Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~ 2042 (2272)
T TIGR01257      1966 ECFGLLGVNGAGKTTTFKMLT---GDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV 2042 (2272)
T ss_pred             cEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC
Confidence            488999999999999999999   76655544432             1111111111     1112222211   0111


Q ss_pred             CHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 PSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.....+.+.+.++   .......-+..++.+++|++.++.++...|++ ++||+|.
T Consensus      2043 ~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V-LLLDEPT 2098 (2272)
T TIGR01257      2043 PAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL-VLLDEPT 2098 (2272)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence            22222222223333   22222223566888899999999999999999 8899999

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.73  E-value=5.8e-08  Score=71.99  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      +..++.++.|++.+++++...|++ ++||+|+..+
T Consensus       147 ~~~LS~G~~qrl~laral~~~p~l-lllDEPt~~L  180 (224)
T TIGR02324       147 PATFSGGEQQRVNIARGFIADYPI-LLLDEPTASL  180 (224)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCcccC
Confidence            455777899999999999999998 7799998543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.72  E-value=6.7e-08  Score=71.74  Aligned_cols=111  Identities=16%  Similarity=0.237  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.              ++.+....+    ....+.+++..+.. ...
T Consensus        41 e~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~  117 (226)
T cd03248          41 EVTALVGPSGSGKSTVVALLE---NFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF  117 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCH
Confidence            478999999999999999999   65443333221              111111111    11234444432211 111


Q ss_pred             HHHHH-----HHHHHHhcC--CCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           71 EVTVS-----LIQKEMESS--DSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        71 ~~~~~-----~i~~~l~~~--~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .....     .+.+.+...  +....   -...++.++.+++.+++++...|++ ++||+|+.-
T Consensus       118 ~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~l-lllDEPt~~  180 (226)
T cd03248         118 ECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV-LILDEATSA  180 (226)
T ss_pred             HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence            11010     012222211  11111   1334666799999999999999999 779999943

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.72  E-value=7e-08  Score=72.77  Aligned_cols=31  Identities=19%  Similarity=0.492  Sum_probs=26.8

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       144 ~~~LS~Gq~qr~~la~al~~~p~l-lllDEP~  174 (250)
T PRK14262        144 GTRLSGGQQQRLCIARALAVEPEV-ILLDEPT  174 (250)
T ss_pred             hhhcCHHHHHHHHHHHHHhCCCCE-EEEeCCc
Confidence            344667799999999999999998 7799999

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.72  E-value=1.1e-07  Score=71.61  Aligned_cols=32  Identities=22%  Similarity=0.453  Sum_probs=27.6

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...++.++.|++.+++++...|++ ++||+|+.
T Consensus       144 ~~~LS~G~~qrv~laral~~~p~l-llLDEPt~  175 (250)
T PRK14245        144 AFALSGGQQQRLCIARAMAVSPSV-LLMDEPAS  175 (250)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCCc
Confidence            445777899999999999999998 77999993

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.72  E-value=1.5e-08  Score=76.69  Aligned_cols=29  Identities=17%  Similarity=0.268  Sum_probs=25.6

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           93 GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .++.++.|++.+++++...|++ ++||+|+
T Consensus       156 ~LS~G~~qrl~laral~~~p~l-lllDEPt  184 (257)
T cd03288         156 NFSVGQRQLFCLARAFVRKSSI-LIMDEAT  184 (257)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            4666789999999999999998 7799998

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.72  E-value=2.8e-08  Score=70.82  Aligned_cols=96  Identities=17%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC-Cc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS-KK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~-~~   88 (196)
                      -+++|.||+||||||+++.+...-|-..+... .         +..  .+..+   ..+. +  .+ ..+.+..... ..
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~-~---------~~~--~~~~~---~~~~-q--~~-~l~~~~L~~~~~~   82 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISF-L---------PKF--SRNKL---IFID-Q--LQ-FLIDVGLGYLTLG   82 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcCCcEEECCc-c---------ccc--ccccE---EEEh-H--HH-HHHHcCCCccccC
Confidence            58899999999999999988522122222110 0         000  00000   0011 1  11 1222222110 11


Q ss_pred             EEEeCCCCCHHHHHHHHHHhCCC--CcEEEEeecChHHH
Q 029287           89 FLIDGFPRSEENRAAFERIMGAE--PDIVLFFDCPEEEM  125 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~~~~~--p~~~i~ld~~~~~~  125 (196)
                      .-...++.++.++..+++++...  |++ ++||+|...+
T Consensus        83 ~~~~~LSgGq~qrl~laral~~~~~p~l-lLlDEPt~~L  120 (176)
T cd03238          83 QKLSTLSGGELQRVKLASELFSEPPGTL-FILDEPSTGL  120 (176)
T ss_pred             CCcCcCCHHHHHHHHHHHHHhhCCCCCE-EEEeCCcccC
Confidence            12345677799999999999888  998 7799998443

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.72  E-value=2.5e-08  Score=82.62  Aligned_cols=31  Identities=16%  Similarity=0.471  Sum_probs=27.8

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       407 ~~~LSgGq~qrv~lAral~~~p~l-LlLDEPt  437 (510)
T PRK09700        407 ITELSGGNQQKVLISKWLCCCPEV-IIFDEPT  437 (510)
T ss_pred             cccCChHHHHHHHHHHHHhcCCCE-EEECCCC
Confidence            556788899999999999999998 7899999

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.72  E-value=7.6e-09  Score=72.51  Aligned_cols=86  Identities=24%  Similarity=0.369  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      -+++|+|++||||||+++.|+   |....+.|.+.....                  ..... ..   ... .   ....
T Consensus        26 ~~~~i~G~nGsGKStll~~l~---g~~~~~~G~i~~~~~------------------~~~~~-~~---~~~-~---~~i~   76 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIA---GLLKPTSGEILIDGK------------------DIAKL-PL---EEL-R---RRIG   76 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCE------------------EcccC-CH---HHH-H---hceE
Confidence            578899999999999999999   765544443321110                  00000 00   000 0   1122


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      ++..++.++.++..+..++...|++ +++|+|+..+
T Consensus        77 ~~~qlS~G~~~r~~l~~~l~~~~~i-~ilDEp~~~l  111 (157)
T cd00267          77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGL  111 (157)
T ss_pred             EEeeCCHHHHHHHHHHHHHhcCCCE-EEEeCCCcCC
Confidence            2334888899999999999999998 7799999443

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.71  E-value=4.8e-08  Score=73.61  Aligned_cols=108  Identities=19%  Similarity=0.281  Sum_probs=58.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC--C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI--V   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~--~   68 (196)
                      -+++|.|++||||||++++|+   |+.. ..|.+.              ++......+     ......+++.....  .
T Consensus        23 ei~~l~G~nGsGKSTLl~~l~---Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~   98 (248)
T PRK03695         23 EILHLVGPNGAGKSTLLARMA---GLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKT   98 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHc---CCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCC
Confidence            488999999999999999999   6542 122211              111111111     11223343332211  1


Q ss_pred             CHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCC-------CCcEEEEeecCh
Q 029287           69 PSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGA-------EPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~-------~p~~~i~ld~~~  122 (196)
                      ........+.+.+...+..   .-.+..++.++.|++.++.++..       .|++ ++||+|+
T Consensus        99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l-lllDEPt  161 (248)
T PRK03695         99 RTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL-LLLDEPM  161 (248)
T ss_pred             CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE-EEEcCCc
Confidence            1111112223333321111   11245577789999999999875       5687 8899999

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.71  E-value=4.9e-08  Score=74.62  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       159 ~~~LSgGq~qrv~LAraL~~~p~l-llLDEPt  189 (274)
T PRK14265        159 GTALSGGQQQRLCIARAIAMKPDV-LLMDEPC  189 (274)
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCE-EEEeCCc
Confidence            344677899999999999999999 7799999

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=1.5e-08  Score=83.82  Aligned_cols=109  Identities=18%  Similarity=0.240  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcee--chhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHL--SAGELL---------------RREIASNSE-----YGTTILNTIKEGKI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i--~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~~   67 (196)
                      -+++|.|++||||||++++|+   |....  +.|.+.               ++.+....+     ...+..+++..+..
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~---Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  108 (506)
T PRK13549         32 EIVSLCGENGAGKSTLMKVLS---GVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNE  108 (506)
T ss_pred             eEEEEECCCCCCHHHHHHHHh---CCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhccc
Confidence            478999999999999999999   65442  333321               111111111     11223444432211


Q ss_pred             ------CCHHHHHHHHHHHHhcCC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           68 ------VPSEVTVSLIQKEMESSD---SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        68 ------~~~~~~~~~i~~~l~~~~---~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                            .........+.+.+....   ....-+..++.++.|++.++.++...|++ ++||+|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l-llLDEPt  171 (506)
T PRK13549        109 ITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL-LILDEPT  171 (506)
T ss_pred             ccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence                  111222223333333222   11222456778899999999999999998 8899999

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.71  E-value=2.7e-08  Score=91.35  Aligned_cols=112  Identities=17%  Similarity=0.243  Sum_probs=67.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHH-------HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGEL-------LRREIASNSE----YGTTILNTIKEGKIVPSEVTVS   75 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~-------~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~   75 (196)
                      -.|+|+|++||||||+++.|..-+   |-..++.-++       +|+.+...++    +..++++++.......++.+..
T Consensus      1246 ekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271      1246 QRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence            478999999999999999999655   2222221111       3333333322    2335777775444344444433


Q ss_pred             HHHHH-----Hhc-C-CCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           76 LIQKE-----MES-S-DSKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        76 ~i~~~-----l~~-~-~~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+...     +.. . +.+..|-+   .++.++.|++.+++++..+|.+ ++||+++
T Consensus      1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I-LlLDEaT 1381 (1490)
T TIGR01271      1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI-LLLDEPS 1381 (1490)
T ss_pred             HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE-EEEeCCc
Confidence            32221     111 1 11333333   3777899999999999999998 7799998

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.70  E-value=6.1e-08  Score=71.61  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=28.0

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ...++.++.|++.+++++...|++ ++||+|+..
T Consensus       138 ~~~LS~G~~qrv~laral~~~p~i-lllDEPt~~  170 (218)
T cd03290         138 GINLSGGQRQRICVARALYQNTNI-VFLDDPFSA  170 (218)
T ss_pred             CCcCCHHHHHHHHHHHHHhhCCCE-EEEeCCccc
Confidence            345777899999999999999998 779999944

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.70  E-value=6.9e-08  Score=73.19  Aligned_cols=31  Identities=23%  Similarity=0.511  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       153 ~~~LS~Gq~qrv~laral~~~p~l-lllDEPt  183 (259)
T PRK14274        153 ALSLSGGQQQRLCIARALATNPDV-LLMDEPT  183 (259)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            345677899999999999999998 7799999

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.70  E-value=6.4e-08  Score=74.43  Aligned_cols=31  Identities=29%  Similarity=0.586  Sum_probs=26.8

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       180 ~~~LSgGq~qrv~LAraL~~~p~l-llLDEPt  210 (286)
T PRK14275        180 ALGLSGGQQQRLCVARTLAVEPEI-LLLDEPT  210 (286)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            344667799999999999999998 7799999

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.70  E-value=1.9e-08  Score=85.37  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=59.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---HHhcCCh-------hhHHHHHHhhcCCCCCHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---EIASNSE-------YGTTILNTIKEGKIVPSEVTVSLIQK   79 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~i~~   79 (196)
                      -+++|+||+||||||++++|+   |....+.|.+...   .+....+       ......+.+..............+..
T Consensus       339 e~~~l~G~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  415 (638)
T PRK10636        339 SRIGLLGRNGAGKSTLIKLLA---GELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG  415 (638)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence            488999999999999999999   6554444443210   0011011       00111222211000001111122222


Q ss_pred             HHhcCC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           80 EMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        80 ~l~~~~-~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+.... ....-+..++.++.+++.++.++...|++ ++||+|+
T Consensus       416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l-LlLDEPt  458 (638)
T PRK10636        416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL-LLLDEPT  458 (638)
T ss_pred             HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            222211 11112556778899999999999999998 7799999

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.70  E-value=4.2e-08  Score=78.42  Aligned_cols=147  Identities=18%  Similarity=0.222  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH---------------HHhcCChh-----hHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR---------------EIASNSEY-----GTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~---------------~~~~~~~~-----~~~~~~~l~~~~---   66 (196)
                      -+-+|.|-+|+||||+.++|.   |+...+.|+++.+               .+....++     ..+..+++.-|.   
T Consensus        31 eIHaLLGENGAGKSTLm~iL~---G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~  107 (501)
T COG3845          31 EIHALLGENGAGKSTLMKILF---GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS  107 (501)
T ss_pred             cEEEEeccCCCCHHHHHHHHh---CcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccc
Confidence            366899999999999999999   9888888777422               12222222     122333333322   


Q ss_pred             ---CCCHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh--------HHHHHHHhhc
Q 029287           67 ---IVPSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE--------EEMVNRVLNR  132 (196)
Q Consensus        67 ---~~~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~--------~~~~~Rl~~r  132 (196)
                         .+........+.+..+   ..-.-...+..++.+.+|++.+.+++...+++ +.||+|+        +.+++.+.+-
T Consensus       108 ~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~i-LILDEPTaVLTP~E~~~lf~~l~~l  186 (501)
T COG3845         108 KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARL-LILDEPTAVLTPQEADELFEILRRL  186 (501)
T ss_pred             cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCE-EEEcCCcccCCHHHHHHHHHHHHHH
Confidence               1223333333333333   22122234777999999999999999999999 7799998        3334433321


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE
Q 029287          133 NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT  170 (196)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (196)
                          .......      .|.+|-...+..++++..++.
T Consensus       187 ----~~~G~tI------i~ITHKL~Ev~~iaDrvTVLR  214 (501)
T COG3845         187 ----AAEGKTI------IFITHKLKEVMAIADRVTVLR  214 (501)
T ss_pred             ----HHCCCEE------EEEeccHHHHHHhhCeeEEEe
Confidence                0111222      678888888888898777765

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.70  E-value=5.8e-08  Score=72.66  Aligned_cols=109  Identities=24%  Similarity=0.325  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH------------HHHHHhcCCh-----hhHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL------------LRREIASNSE-----YGTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~------------~~~~~~~~~~-----~~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+            .++.....++     ....+.+++....   ...
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~  103 (237)
T TIGR00968        27 SLVALLGPSGSGKSTLLRIIA---GLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP  103 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCC
Confidence            488999999999999999999   5543333321            1111111110     1112333332211   111


Q ss_pred             HHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .......+.+.+...+...   .....++.++.+++.+++++...|++ ++||+|+
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l-lllDEP~  158 (237)
T TIGR00968       104 KAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV-LLLDEPF  158 (237)
T ss_pred             HHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            1111222333333222111   12345777899999999999999998 7799999

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.69  E-value=2.9e-07  Score=77.08  Aligned_cols=31  Identities=29%  Similarity=0.587  Sum_probs=27.7

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.+++.++.++...|++ ++||+|+
T Consensus       159 ~~~LSgGqkqrv~la~al~~~p~l-LLLDEPt  189 (552)
T TIGR03719       159 VTKLSGGERRRVALCRLLLSKPDM-LLLDEPT  189 (552)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            456778899999999999999998 7799999

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.68  E-value=6.1e-06  Score=61.00  Aligned_cols=46  Identities=22%  Similarity=0.429  Sum_probs=39.7

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASN   51 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~   51 (196)
                      +..|.+|.|-|+||.||||++..|+.++|+.++-..|.+|+.+.+.
T Consensus        86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~i  131 (299)
T COG2074          86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKI  131 (299)
T ss_pred             cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHh
Confidence            4568899999999999999999999999999987778877766543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.68  E-value=3e-08  Score=81.99  Aligned_cols=109  Identities=17%  Similarity=0.239  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChh-----hHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEY-----GTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~-----~~~~~~~l~~~~---   66 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.               ++.+....+.     ...+.+++..+.   
T Consensus        31 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~  107 (501)
T PRK11288         31 QVHALMGENGAGKSTLLKILS---GNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPH  107 (501)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccccc
Confidence            478999999999999999999   66544433321               1111111111     112334333211   


Q ss_pred             ---CCCHHHHHHHHHHHHhcCC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 ---IVPSEVTVSLIQKEMESSD---SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ---~~~~~~~~~~i~~~l~~~~---~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                         ..........+.+.+...+   ....-+..++.++.|++.+++++...|++ ++||+|+
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l-llLDEPt  168 (501)
T PRK11288        108 KGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV-IAFDEPT  168 (501)
T ss_pred             ccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE-EEEcCCC
Confidence               0112222223333333221   11122456777899999999999999998 7899999

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=6.7e-08  Score=73.99  Aligned_cols=109  Identities=23%  Similarity=0.351  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh------hHHHHHHhhcC---C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY------GTTILNTIKEG---K   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~------~~~~~~~l~~~---~   66 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+.              ++.+....+.      ...+.+++..+   .
T Consensus        34 e~~~I~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~  110 (277)
T PRK13642         34 EWVSIIGQNGSGKSTTARLID---GLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ  110 (277)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc
Confidence            478999999999999999999   55443333221              1111111111      11223333211   1


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 ~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ........+.+...+...+-..+   -...++.++.|++.+++++...|++ +++|+|+
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l-lllDEPt  168 (277)
T PRK13642        111 GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI-IILDEST  168 (277)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            11222222233333332221111   1345677799999999999999998 7799999

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.68  E-value=5.9e-08  Score=72.53  Aligned_cols=109  Identities=24%  Similarity=0.347  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSE-----YGTTILNTIKEG---KIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~-----~~~~~~~~l~~~---~~~~   69 (196)
                      -+++|.|++||||||+++.|+   |....+.|++.            ++.+....+     ......+++...   ....
T Consensus        26 e~~~i~G~nG~GKStLl~~l~---G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~  102 (235)
T cd03299          26 DYFVILGPTGSGKSVLLETIA---GFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD  102 (235)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC
Confidence            488999999999999999999   76555544331            111110000     011222322211   0011


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .......+.+.+.......+   -+..++.++.+++.++.++...|++ ++||+|+
T Consensus       103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-lllDEPt  157 (235)
T cd03299         103 KKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI-LLLDEPF  157 (235)
T ss_pred             HHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE-EEECCCc
Confidence            11122223333332221111   1345677899999999999999998 7799999

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.68  E-value=7.2e-08  Score=71.90  Aligned_cols=109  Identities=23%  Similarity=0.370  Sum_probs=59.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSE-----YGTTILNTIKEG---KIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~-----~~~~~~~~l~~~---~~~~   69 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.            ++......+     .+..+.+.+..+   ....
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~---g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~  103 (232)
T cd03300          27 EFFTLLGPSGCGKTTLLRLIA---GFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP  103 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCC
Confidence            588999999999999999999   55444433221            111111000     011222222211   0011


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .......+...+...+...+   ....++.++.+++.+++++...|++ ++||+|+
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l-lllDEP~  158 (232)
T cd03300         104 KAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV-LLLDEPL  158 (232)
T ss_pred             HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            11111222333332111111   2345777899999999999999999 7799999

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.68  E-value=4.9e-08  Score=74.52  Aligned_cols=31  Identities=26%  Similarity=0.588  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       165 ~~~LSgGe~qrv~laraL~~~p~l-llLDEPt  195 (271)
T PRK14238        165 AYGLSGGQQQRLCIARCLAIEPDV-ILMDEPT  195 (271)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence            345777899999999999999998 7799999

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.68  E-value=7.1e-08  Score=72.56  Aligned_cols=30  Identities=20%  Similarity=0.480  Sum_probs=26.5

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..++.++.|++.+++++...|++ ++||+|+
T Consensus       141 ~~LS~G~~qrv~laral~~~p~l-llLDEP~  170 (246)
T PRK14269        141 LALSGGQQQRLCIARALAIKPKL-LLLDEPT  170 (246)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            44677799999999999999999 7799999

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.68  E-value=5.7e-08  Score=81.79  Aligned_cols=109  Identities=20%  Similarity=0.291  Sum_probs=65.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|.|++||||||+++.|+   |....+.|.+              .++.....++    ...++++++..+.. ..+
T Consensus       362 ~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~  438 (585)
T TIGR01192       362 QTVAIVGPTGAGKTTLINLLQ---RVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATD  438 (585)
T ss_pred             CEEEEECCCCCCHHHHHHHHc---cCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCH
Confidence            578999999999999999999   4433333322              2222222221    23356777766533 233


Q ss_pred             HHHHHHHH-----HHHhc-CC-CCcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQ-----KEMES-SD-SKKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~-----~~l~~-~~-~~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.......     +.+.. .. .+..+-   ..++.++.|++.+++++...|++ ++||+|+
T Consensus       439 ~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i-lilDEpt  499 (585)
T TIGR01192       439 EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI-LVLDEAT  499 (585)
T ss_pred             HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence            33322211     11211 11 122222   23667799999999999999999 7799999

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.68  E-value=8.9e-09  Score=85.97  Aligned_cols=111  Identities=17%  Similarity=0.269  Sum_probs=65.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|.|++||||||+++.|+..+   ..+.|.+              .++.....++    ...++++++..+.. ..+
T Consensus       345 ~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~  421 (544)
T TIGR01842       345 EALAIIGPSGSGKSTLARLIVGIW---PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADP  421 (544)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCH
Confidence            478999999999999999999443   3333221              2222222221    12256777764332 333


Q ss_pred             HHHHHH-----HHHHHhcC--CCCcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           71 EVTVSL-----IQKEMESS--DSKKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        71 ~~~~~~-----i~~~l~~~--~~~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      +.....     +.+.+..-  +.+..+   ...++.++.|++.+++++..+|++ ++||+|+.-
T Consensus       422 ~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i-lilDEpts~  484 (544)
T TIGR01842       422 EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL-VVLDEPNSN  484 (544)
T ss_pred             HHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence            332221     11222221  112222   234667899999999999999998 779999943

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.67  E-value=2.1e-08  Score=74.77  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=26.3

Q ss_pred             CCCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            5 GGKGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.|++|+|.|++|+||||+++.|..-+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll  106 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALL  106 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence            45678999999999999999999999876

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=2.3e-08  Score=84.86  Aligned_cols=31  Identities=19%  Similarity=0.373  Sum_probs=27.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.+++.++.++...|++ ++||+|+
T Consensus       147 ~~~LSgGerqRv~LA~aL~~~P~l-LLLDEPt  177 (638)
T PRK10636        147 VSDFSGGWRMRLNLAQALICRSDL-LLLDEPT  177 (638)
T ss_pred             hhhcCHHHHHHHHHHHHHccCCCE-EEEcCCC
Confidence            456778899999999999999998 8899999

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=7.3e-08  Score=72.61  Aligned_cols=30  Identities=27%  Similarity=0.601  Sum_probs=26.2

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..++.++.|++.+++++...|++ ++||+|+
T Consensus       144 ~~LS~G~~qrv~laral~~~p~l-lllDEP~  173 (249)
T PRK14253        144 FGLSGGQQQRLCIARTIAMEPDV-ILMDEPT  173 (249)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence            34667799999999999999998 7799999

>PLN03232 ABC transporter C family member; Provisional

Probab=98.66  E-value=5.1e-08  Score=89.65  Aligned_cols=109  Identities=19%  Similarity=0.292  Sum_probs=69.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHHHHHHHH---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--LRREIASNSE----YGTTILNTIKEGKIVPSEVTVSLIQKE---   80 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~i~~~---   80 (196)
                      -.++|+|++||||||+++.|.   |......|.+  ++..+...++    ...++++++..|...+++...+.+...   
T Consensus       644 e~vaIvG~sGSGKSTLl~lLl---G~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~  720 (1495)
T PLN03232        644 SLVAIVGGTGEGKTSLISAML---GELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQ  720 (1495)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCH
Confidence            478999999999999999999   5444433321  1222222222    234588888887765544333322211   


Q ss_pred             --Hh-cCC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           81 --ME-SSD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        81 --l~-~~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                        +. .++ ....|-+   .++.+++||+++++++..+|++ ++||+|+
T Consensus       721 ~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I-lLLDEpt  768 (1495)
T PLN03232        721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI-YIFDDPL  768 (1495)
T ss_pred             HHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence              11 112 2334433   3667899999999999999998 7799998

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=1.2e-07  Score=71.76  Aligned_cols=32  Identities=19%  Similarity=0.471  Sum_probs=27.3

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...++.++.++..+++++...|++ ++||+|+.
T Consensus       151 ~~~LS~G~~qrl~laral~~~P~l-lllDEPt~  182 (257)
T PRK14246        151 ASQLSGGQQQRLTIARALALKPKV-LLMDEPTS  182 (257)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCE-EEEcCCCc
Confidence            344677799999999999999999 77999993

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.66  E-value=4.1e-08  Score=81.24  Aligned_cols=109  Identities=14%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcee--chhHHH---------------HHHHhcCChh-----hHHHHHHhhcCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHL--SAGELL---------------RREIASNSEY-----GTTILNTIKEGKI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i--~~~~~~---------------~~~~~~~~~~-----~~~~~~~l~~~~~   67 (196)
                      -+++|.|++||||||+++.|+   |....  +.|.+.               ++.+....+.     ...+.+++..+..
T Consensus        28 e~~~liG~nGsGKSTLl~~i~---G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~  104 (500)
T TIGR02633        28 ECVGLCGENGAGKSTLMKILS---GVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNE  104 (500)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhcc
Confidence            488999999999999999999   65432  233221               1111111111     1123333322110


Q ss_pred             -------CCHHHHHHHHHHHHhcCCCCc----EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           68 -------VPSEVTVSLIQKEMESSDSKK----FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        68 -------~~~~~~~~~i~~~l~~~~~~~----~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                             .........+.+.+....-..    .-+..++.++.|++.++.++...|++ ++||+|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~l-llLDEPt  169 (500)
T TIGR02633       105 ITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARL-LILDEPS  169 (500)
T ss_pred             ccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCE-EEEeCCC
Confidence                   111112222333333222111    12456788899999999999999998 8899999

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=1.8e-07  Score=71.16  Aligned_cols=31  Identities=26%  Similarity=0.570  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.+++.+++++...|++ ++||+|+
T Consensus       159 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt  189 (265)
T PRK14252        159 AFNLSGGQQQRLCIARALATDPEI-LLFDEPT  189 (265)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence            345677799999999999999998 7799999

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.65  E-value=3.1e-08  Score=81.64  Aligned_cols=108  Identities=16%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------HHHHhcCChhhHHHHHHhhcCCCC-CHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------RREIASNSEYGTTILNTIKEGKIV-PSEVTVSLIQ   78 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~i~   78 (196)
                      =+|+|+||+|+||||+++.|+...+   ...|.+.          .+...... ....+.+++....+. ....+...+.
T Consensus       349 ~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~v~igyf~Q~~~~l~-~~~t~~d~l~~~~~~~~e~~~r~~L~  424 (530)
T COG0488         349 DRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGETVKIGYFDQHRDELD-PDKTVLEELSEGFPDGDEQEVRAYLG  424 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCceEEEEEEehhhhcC-ccCcHHHHHHhhCccccHHHHHHHHH
Confidence            4789999999999999999974432   1122111          11100100 111344444443322 1233333333


Q ss_pred             HHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           79 KEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        79 ~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+-......--+..++.+++.++.++..+...|.+ ++||+|+
T Consensus       425 ~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv-LiLDEPT  467 (530)
T COG0488         425 RFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL-LLLDEPT  467 (530)
T ss_pred             HcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE-EEEcCCC
Confidence            333322222234666888999999999999989998 7899998

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.65  E-value=2.4e-07  Score=70.56  Aligned_cols=30  Identities=27%  Similarity=0.525  Sum_probs=26.1

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..++.++.|++.+++++...|++ ++||+|+
T Consensus       162 ~~LS~G~~qrl~laral~~~p~l-llLDEPt  191 (267)
T PRK14237        162 LTLSGGQQQRLCIARAIAVKPDI-LLMDEPA  191 (267)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            34666799999999999999998 7799999

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.65  E-value=1.5e-07  Score=71.05  Aligned_cols=31  Identities=23%  Similarity=0.581  Sum_probs=26.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.++.++...|++ ++||+|+
T Consensus       146 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt  176 (252)
T PRK14239        146 ALGLSGGQQQRVCIARVLATSPKI-ILLDEPT  176 (252)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCc
Confidence            345777899999999999999998 7799999

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=1.1e-07  Score=71.77  Aligned_cols=32  Identities=16%  Similarity=0.430  Sum_probs=27.4

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ...++.++.+++.+++++...|++ ++||+|+.
T Consensus       147 ~~~LS~G~~qrv~laral~~~p~l-llLDEP~~  178 (253)
T PRK14261        147 ALSLSGGQQQRLCIARTLAVNPEV-ILMDEPCS  178 (253)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEeCCcc
Confidence            345777899999999999999999 77999993

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.64  E-value=4.4e-08  Score=91.23  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCChh-----hHHHHHHhhcC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSEY-----GTTILNTIKEG---KIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~~-----~~~~~~~l~~~---~~~   68 (196)
                      -+++|.|++||||||++++|+   |+...+.|++.             ++.+...++.     ..+..+.+...   ...
T Consensus       957 ei~aLLG~NGAGKSTLLkiLa---GLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~ 1033 (2272)
T TIGR01257       957 QITAFLGHNGAGKTTTLSILT---GLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR 1033 (2272)
T ss_pred             cEEEEECCCCChHHHHHHHHh---cCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC
Confidence            478999999999999999999   77655444331             1111111110     11223322211   011


Q ss_pred             CHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 PSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ......+.+.+.+.   .......-...++.+++|++.++.++...|++ ++||+|+
T Consensus      1034 ~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV-LLLDEPT 1089 (2272)
T TIGR01257      1034 SWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV-VVLDEPT 1089 (2272)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCC
Confidence            11212222333333   22222223556778899999999999999999 7799999

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.64  E-value=1e-08  Score=74.72  Aligned_cols=99  Identities=21%  Similarity=0.335  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc--eechhHHHHHHHhcCC-hhhHHHHH---HhhcCC-CCCHHHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT--HLSAGELLRREIASNS-EYGTTILN---TIKEGK-IVPSEVTVSLIQKEME   82 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~~~~~~~~~~~~~~-~~~~~~~~---~l~~~~-~~~~~~~~~~i~~~l~   82 (196)
                      -+++|.|++||||||+++.|+   |..  ..+.|.+......... ......+.   ++.... ..+.....    +.+.
T Consensus        27 e~~~i~G~nGsGKStLl~~l~---G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~----~~l~   99 (200)
T cd03217          27 EVHALMGPNGSGKSTLAKTIM---GHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNA----DFLR   99 (200)
T ss_pred             cEEEEECCCCCCHHHHHHHHh---CCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHH----HHHh
Confidence            488999999999999999999   763  3344433211100000 00000000   000000 00101111    1111


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                            .....++.++.|++.+++++...|++ ++||+|+
T Consensus       100 ------~~~~~LS~G~~qrv~laral~~~p~i-lllDEPt  132 (200)
T cd03217         100 ------YVNEGFSGGEKKRNEILQLLLLEPDL-AILDEPD  132 (200)
T ss_pred             ------hccccCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence                  11245777899999999999999998 7799999

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.63  E-value=1.3e-07  Score=65.84  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC----Ccee-chhHHH--------------HHHHhcCChh----------hHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG----LTHL-SAGELL--------------RREIASNSEY----------GTTILN   60 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~----~~~i-~~~~~~--------------~~~~~~~~~~----------~~~~~~   60 (196)
                      -++++.||+||||||+++.|-..|.    ...+ ..|+++              ++-+...+++          ......
T Consensus        38 ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP  117 (235)
T COG4778          38 ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP  117 (235)
T ss_pred             cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence            3788999999999999999997772    1111 112221              1111111111          111122


Q ss_pred             HhhcCCCCCH-HHHHHHHHHHHhcCCCCcEEE--eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHH
Q 029287           61 TIKEGKIVPS-EVTVSLIQKEMESSDSKKFLI--DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM  125 (196)
Q Consensus        61 ~l~~~~~~~~-~~~~~~i~~~l~~~~~~~~ii--d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~  125 (196)
                      .+..|..... ......+...+... .+.|-+  ..|+.+.+|++.+++.+.....+ ++||+|+..+
T Consensus       118 ll~~gv~~~~a~~~a~~Ll~rLnlp-erLW~LaPaTFSGGEqQRVNIaRgfivd~pI-LLLDEPTasL  183 (235)
T COG4778         118 LLARGVPREVARAKAADLLTRLNLP-ERLWSLAPATFSGGEQQRVNIARGFIVDYPI-LLLDEPTASL  183 (235)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCC-HHHhcCCCcccCCchheehhhhhhhhccCce-EEecCCcccc
Confidence            2333322221 12233444444432 233422  23677899999999998766666 7899998654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.63  E-value=1e-07  Score=78.62  Aligned_cols=31  Identities=29%  Similarity=0.534  Sum_probs=26.7

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.+..-++.+++++...||+ ++||+|+
T Consensus       151 ~~~LSGG~r~Rv~LA~aL~~~pDl-LLLDEPT  181 (530)
T COG0488         151 VSSLSGGWRRRVALARALLEEPDL-LLLDEPT  181 (530)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            445666788899999999999999 8899998

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.63  E-value=9.7e-08  Score=72.72  Aligned_cols=31  Identities=19%  Similarity=0.499  Sum_probs=27.1

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|++ ++||+|+
T Consensus       161 ~~~LSgGq~qrv~laral~~~p~l-llLDEPt  191 (267)
T PRK14235        161 GTGLSGGQQQRLCIARAIAVSPEV-ILMDEPC  191 (267)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence            345777899999999999999998 7799999

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.62  E-value=1.3e-08  Score=86.35  Aligned_cols=108  Identities=19%  Similarity=0.247  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---HhcCCh------hhHHHHHHhhcCCC-C-CHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---IASNSE------YGTTILNTIKEGKI-V-PSEVTVSLIQ   78 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---~~~~~~------~~~~~~~~l~~~~~-~-~~~~~~~~i~   78 (196)
                      -+++|+|++||||||++++|+   |....+.|.+....   +....+      ....+.+++..+.. . ... ....+.
T Consensus       346 e~~~l~G~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~-~~~~~~  421 (635)
T PRK11147        346 DKIALIGPNGCGKTTLLKLML---GQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNG-RPRHVL  421 (635)
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccc-hHHHHH
Confidence            478999999999999999999   66544444432100   011111      11123333332110 0 000 011222


Q ss_pred             HHHhcCC----CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           79 KEMESSD----SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        79 ~~l~~~~----~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..+....    ....-+..++.++.+++.++.++...|++ ++||+|+
T Consensus       422 ~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l-LlLDEPt  468 (635)
T PRK11147        422 GYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL-LILDEPT  468 (635)
T ss_pred             HHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            2332111    11112456778899999999999999998 8899999

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.62  E-value=1.5e-08  Score=75.30  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=27.7

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      +..++.++.|++.+++++...|++ ++||+|+..
T Consensus       141 ~~~LS~G~~qrl~laral~~~p~i-lllDEP~~g  173 (226)
T cd03234         141 VKGISGGERRRVSIAVQLLWDPKV-LILDEPTSG  173 (226)
T ss_pred             ccCcCHHHHHHHHHHHHHHhCCCE-EEEeCCCcC
Confidence            345677899999999999999998 779999944

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.62  E-value=6.6e-08  Score=72.56  Aligned_cols=29  Identities=24%  Similarity=0.431  Sum_probs=26.3

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           93 GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .++.++.|++.++.++...|++ ++||+|+
T Consensus       144 ~LS~G~~qrl~la~al~~~p~l-lllDEPt  172 (243)
T TIGR01978       144 GFSGGEKKRNEILQMALLEPKL-AILDEID  172 (243)
T ss_pred             CcCHHHHHHHHHHHHHhcCCCE-EEecCCc
Confidence            4777899999999999999998 7799999

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=98.62  E-value=2.8e-07  Score=74.03  Aligned_cols=112  Identities=18%  Similarity=0.266  Sum_probs=66.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhHH-------HHHHHhcCChhhHHHH----HHhhcCCCC-CHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGEL-------LRREIASNSEYGTTIL----NTIKEGKIV-PSEVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~~-------~~~~~~~~~~~~~~~~----~~l~~~~~~-~~~~~   73 (196)
                      ..+++.||+|+||||+.+.|.+.|    |...+|..|+       .|..+.-.++....+.    -+++.+.+- .++++
T Consensus       565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneev  644 (790)
T KOG0056|consen  565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEV  644 (790)
T ss_pred             cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHH
Confidence            589999999999999999999988    4455555444       3444444444332222    233333332 12222


Q ss_pred             H-----HHHHHHHhc-CC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           74 V-----SLIQKEMES-SD-SKKFLIDG---FPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        74 ~-----~~i~~~l~~-~~-~~~~iid~---~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .     ..|.+.+.. ++ ...-|-++   ++.+++|++++++.+...|.+ |+||+-+
T Consensus       645 yaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i-IlLDEAT  702 (790)
T KOG0056|consen  645 YAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI-ILLDEAT  702 (790)
T ss_pred             HHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE-EEEcchh
Confidence            1     122222222 11 12223332   566799999999999989998 6677654

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.62  E-value=4.8e-08  Score=81.75  Aligned_cols=31  Identities=29%  Similarity=0.575  Sum_probs=27.8

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.++.++...|++ ++||+|+
T Consensus       161 ~~~LSgGqkqrv~la~al~~~p~v-lLLDEPt  191 (556)
T PRK11819        161 VTKLSGGERRRVALCRLLLEKPDM-LLLDEPT  191 (556)
T ss_pred             hhhcCHHHHHHHHHHHHHhCCCCE-EEEcCCC
Confidence            456778899999999999999998 8899999

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=2.7e-07  Score=69.63  Aligned_cols=31  Identities=29%  Similarity=0.632  Sum_probs=27.1

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.+++.+++++...|++ ++||+|+
T Consensus       146 ~~~LS~G~~qrv~laral~~~p~l-lllDEP~  176 (252)
T PRK14272        146 ATGLSGGQQQRLCIARALAVEPEI-LLMDEPT  176 (252)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            445777899999999999999998 7799999

>PLN02165 adenylate isopentenyltransferase

Probab=98.61  E-value=1.9e-07  Score=72.37  Aligned_cols=34  Identities=15%  Similarity=0.415  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL   43 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~   43 (196)
                      .+++|+||+||||||++..|++.++..+++.|.+
T Consensus        44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            4889999999999999999999999888888766

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.61  E-value=1.8e-07  Score=85.54  Aligned_cols=110  Identities=19%  Similarity=0.330  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCce---echhHH----------HHHHHhcCCh-----hhHHHHHHhhcC------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTH---LSAGEL----------LRREIASNSE-----YGTTILNTIKEG------   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~---i~~~~~----------~~~~~~~~~~-----~~~~~~~~l~~~------   65 (196)
                      -+++|.|++||||||+++.|+   |...   ++.|++          +++......+     ...++++.+...      
T Consensus       790 e~~aI~G~sGaGKSTLL~~La---g~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~  866 (1394)
T TIGR00956       790 TLTALMGASGAGKTTLLNVLA---ERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQP  866 (1394)
T ss_pred             EEEEEECCCCCCHHHHHHHHh---CCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCC
Confidence            478999999999999999999   5432   222222          2222222111     122344444321      


Q ss_pred             CCCCHHHHHH---HHHHHHhcCCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 KIVPSEVTVS---LIQKEMESSDSKKFLID----GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 ~~~~~~~~~~---~i~~~l~~~~~~~~iid----~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ....+....+   .+.+.+.........+.    +++.++.+++.++.++..+|+.+++||+|+
T Consensus       867 ~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT  930 (1394)
T TIGR00956       867 KSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT  930 (1394)
T ss_pred             CCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence            1122222222   33333333332222333    688899999999999999998458999999

>PLN03130 ABC transporter C family member; Provisional

Probab=98.61  E-value=5.5e-08  Score=89.82  Aligned_cols=109  Identities=16%  Similarity=0.285  Sum_probs=69.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceech-hHH-HHHHHhcCCh----hhHHHHHHhhcCCCCCHHHHHHHHHH----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA-GEL-LRREIASNSE----YGTTILNTIKEGKIVPSEVTVSLIQK----   79 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~-~~~-~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~i~~----   79 (196)
                      -.++|+|++||||||+++.|...+   .... |.+ ++..+...++    ...++++++..|....++...+.+..    
T Consensus       644 e~vaIvG~sGSGKSTLl~lLlG~~---~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~  720 (1622)
T PLN03130        644 SLVAIVGSTGEGKTSLISAMLGEL---PPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ  720 (1622)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh---ccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcH
Confidence            578999999999999999999555   2333 332 1222222222    23458888888776554433222221    


Q ss_pred             -HHh-cCCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           80 -EME-SSDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        80 -~l~-~~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       .+. .+.+ ...|-+   .++.+++||+++++++...|++ ++||.|.
T Consensus       721 ~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I-lLLDEpt  768 (1622)
T PLN03130        721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV-YIFDDPL  768 (1622)
T ss_pred             HHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE-EEECCCc
Confidence             111 1122 333333   2777899999999999999998 7799998

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.61  E-value=4e-08  Score=83.71  Aligned_cols=108  Identities=16%  Similarity=0.231  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---HHHhcCC-----hhhHHHHHHhhcCCC--------CCHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---REIASNS-----EYGTTILNTIKEGKI--------VPSEVT   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---~~~~~~~-----~~~~~~~~~l~~~~~--------~~~~~~   73 (196)
                      -+++|+|++||||||+++.|+   |....+.|.+..   +.+...+     ..+ .+++++..+..        ..+...
T Consensus       479 e~~~IvG~nGsGKSTLl~lL~---Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i  554 (659)
T TIGR00954       479 NHLLICGPNGCGKSSLFRILG---ELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDL  554 (659)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHH
Confidence            478999999999999999999   654444444321   1111111     112 45666554321        112221


Q ss_pred             HHHHHHHHhcC------CC----CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           74 VSLIQKEMESS------DS----KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        74 ~~~i~~~l~~~------~~----~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .+. .+.+...      .+    ..+ ...++.++.|++.+++++...|++ ++||+|+..
T Consensus       555 ~~~-l~~~~l~~~~~~~~g~~~~~~~-~~~LSgGqkQRl~iARal~~~p~i-llLDEpts~  612 (659)
T TIGR00954       555 EQI-LDNVQLTHILEREGGWSAVQDW-MDVLSGGEKQRIAMARLFYHKPQF-AILDECTSA  612 (659)
T ss_pred             HHH-HHHcCCHHHHhhcCCccccccc-ccCCCHHHHHHHHHHHHHHcCCCE-EEEeCCccC
Confidence            111 1111110      00    111 245777899999999999999998 779999943

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.60  E-value=7.7e-08  Score=72.88  Aligned_cols=31  Identities=29%  Similarity=0.571  Sum_probs=27.2

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       146 ~~~LS~G~~qrv~laral~~~p~l-lllDEPt  176 (258)
T PRK14241        146 GGGLSGGQQQRLCIARAIAVEPDV-LLMDEPC  176 (258)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEcCCC
Confidence            455777899999999999999998 7799999

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.59  E-value=2.1e-07  Score=67.09  Aligned_cols=111  Identities=22%  Similarity=0.367  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH-----------------HHHHHhcCCh--hhHHHHHHhhcCCCC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL-----------------LRREIASNSE--YGTTILNTIKEGKIV--   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~-----------------~~~~~~~~~~--~~~~~~~~l~~~~~~--   68 (196)
                      -+.+|.||+||||||+++.|+-.+   ..+.|.+                 .+..++..+.  +.....+.+.-|..-  
T Consensus        28 ev~ailGPNGAGKSTlLk~LsGel---~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~  104 (259)
T COG4559          28 EVLAILGPNGAGKSTLLKALSGEL---SPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR  104 (259)
T ss_pred             cEEEEECCCCccHHHHHHHhhCcc---CCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc
Confidence            477889999999999999999554   2222221                 1122222222  222244555443221  


Q ss_pred             ---CHHHHHHHHHHHHhcCCCCcEE---EeCCCCCHHHHHHHHHHhC----CCCcE-EEEeecChH
Q 029287           69 ---PSEVTVSLIQKEMESSDSKKFL---IDGFPRSEENRAAFERIMG----AEPDI-VLFFDCPEE  123 (196)
Q Consensus        69 ---~~~~~~~~i~~~l~~~~~~~~i---id~~~~~~~~~~~~~~~~~----~~p~~-~i~ld~~~~  123 (196)
                         ............+...+..++-   .-.++.++.|++.+++.+.    +.|+- .+|||+|+.
T Consensus       105 ~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPts  170 (259)
T COG4559         105 SGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS  170 (259)
T ss_pred             cCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcc
Confidence               1112344456666655554432   1225567899999888652    22333 699999993

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.58  E-value=7.8e-09  Score=79.18  Aligned_cols=109  Identities=19%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcCCh----hhHHHHHHhhcCCCCCHHHHHHH-----HHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IASNSE----YGTTILNTIKEGKIVPSEVTVSL-----IQK   79 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~-----i~~   79 (196)
                      -+++|.|++||||||++++|+   |....+.|.+.... +....+    ....+.+++..+...........     +..
T Consensus        64 e~~~liG~NGsGKSTLl~~I~---Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~  140 (282)
T cd03291          64 EMLAITGSTGSGKTSLLMLIL---GELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEE  140 (282)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHH
Confidence            478999999999999999999   76554444332100 000000    00134444433221111111111     111


Q ss_pred             HHhcCC-CCcEEE----eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           80 EMESSD-SKKFLI----DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        80 ~l~~~~-~~~~ii----d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+.... ...-.+    ..++.++.+++.++.++...|++ ++||+|+
T Consensus       141 ~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i-LiLDEPt  187 (282)
T cd03291         141 DITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL-YLLDSPF  187 (282)
T ss_pred             HHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence            111111 000012    34666799999999999999998 7799999

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.57  E-value=4.8e-07  Score=76.69  Aligned_cols=113  Identities=19%  Similarity=0.218  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC-------ceechh----HHHHHHHhcCChh-----hHHHHHHhhcC------CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL-------THLSAG----ELLRREIASNSEY-----GTTILNTIKEG------KI   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~-------~~i~~~----~~~~~~~~~~~~~-----~~~~~~~l~~~------~~   67 (196)
                      -+++|.||+||||||+++.|+....-       ..++..    ...++......+.     ..++++.+..+      ..
T Consensus        52 e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~  131 (617)
T TIGR00955        52 ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR  131 (617)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC
Confidence            47899999999999999999943210       111110    1112222221111     12344444321      11


Q ss_pred             CCHHHH---HHHHHHHHhcCCC-CcEEE-----eCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           68 VPSEVT---VSLIQKEMESSDS-KKFLI-----DGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        68 ~~~~~~---~~~i~~~l~~~~~-~~~ii-----d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ......   ...+.+.+..... +..+-     .+++.++++++.++.++...|++ ++||+|+.
T Consensus       132 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v-lllDEPts  195 (617)
T TIGR00955       132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL-LFCDEPTS  195 (617)
T ss_pred             CCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE-EEeeCCCc
Confidence            122222   2333333333222 22222     35888999999999999999998 88999993

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		7e-46
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		2e-42
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		3e-41
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		3e-41
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		3e-41
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		6e-39
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		1e-34
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		1e-27
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		1e-27
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		3e-25
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		7e-25
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		2e-24
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		3e-24
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		4e-23
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		5e-23
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		2e-22
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		2e-22
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		2e-22
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		3e-22
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		3e-22
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		6e-22
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		8e-22
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		8e-22
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		1e-21
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		2e-21
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		1e-20
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		3e-20
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-20
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		3e-20
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		4e-20
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		4e-20
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		5e-20
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		6e-20
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		7e-20
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		8e-20
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-19
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		3e-19
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		2e-16
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		2e-16
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		4e-15
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		5e-13
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		5e-13

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score =  179 bits (455), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 129/190 (67%), Gaps = 10/190 (5%)
Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
           P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IKEGKI
Sbjct: 3   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62
Query: 68  VPSEVTVSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDI--VLFFDC 120
           VP E+T+SL+++EM+     ++   KFLIDGFPR+++N   + + M  + D+  VLFFDC
Sbjct: 63  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122
Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R  + GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct: 123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 182
Query: 179 EIFEQVRAVF 188
           E+F++V  +F
Sbjct: 183 EVFDEVVQIF 192

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score =  167 bits (424), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 123/181 (67%), Gaps = 7/181 (3%)
Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-SNSEYGTTILNTIKEGKIVP 69
           + FVLGGPG+GKGTQC K+VK+Y   HLSAG+LLR E   + S+YG  I N IKEG+IVP
Sbjct: 17  VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP 76
Query: 70  SEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
            E+T++L++  +     ++  KFLIDGFPR  +   +FER +  E   +LFFDCPE+ M+
Sbjct: 77  QEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIML 135
Query: 127 NRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
            R+L R +  GR DDNI++++KR   FK  ++PVI Y+  + K+  +    +V+++++ V
Sbjct: 136 ERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 195
Query: 185 R 185
           +
Sbjct: 196 Q 196

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 120/186 (64%), Gaps = 5/186 (2%)
Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           I FV+GGPGSGKGTQC KIV+ YG THLS G+LLR E++S S  G  +   +++G++VP 
Sbjct: 11  IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPL 70
Query: 71  EVTVSLIQKEM--ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
           E  + +++  M  +   SK FLIDG+PR  +    FER +G +P ++L+ D   E M  R
Sbjct: 71  ETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIG-QPTLLLYVDAGPETMTKR 129
Query: 129 VLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
           +L R E  GRVDDN +T++KRL+ +     PVI +Y +RG +  +NA G+VD++F QV  
Sbjct: 130 LLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCT 189
Query: 187 VFAALK 192
               LK
Sbjct: 190 HLDTLK 195

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 120/185 (64%), Gaps = 5/185 (2%)
Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           I FV+GGPGSGKGTQC KIV+ YG THLS G+LLR E++S S  G  +   +++G++VP 
Sbjct: 11  IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL 70
Query: 71  EVTVSLIQKEM--ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
           E  + +++  M  + + SK FLIDG+PR  +    FER +G +P ++L+ D   E M  R
Sbjct: 71  ETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPETMTQR 129
Query: 129 VLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
           +L R E  GRVDDN +T++KRL+ +     PVI +Y +RG +  +NA G+VD +F QV  
Sbjct: 130 LLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCT 189
Query: 187 VFAAL 191
              AL
Sbjct: 190 HLDAL 194

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/187 (47%), Positives = 123/187 (65%), Gaps = 4/187 (2%)
Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           P + FVLGGPGSGKGTQCA IV+++G  HLSAG+LLR+E  S S+ G  I   IK G+IV
Sbjct: 6   PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65
Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMV 126
           PS VTV L++  ++++  K FL+DGFPR+EEN  ++E  M    +   VLFFDCPEE M 
Sbjct: 66  PSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMT 125
Query: 127 NRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
            R+L R E  GR DDNI++++KR   F      VI++Y +  K+  I A   V+E++  V
Sbjct: 126 QRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDV 185
Query: 185 RAVFAAL 191
             +F ++
Sbjct: 186 ENLFKSM 192

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 118/178 (66%), Gaps = 5/178 (2%)
Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           I F++GGPGSGKGTQC K+V+ YG THLS GELLR E+AS SE    I + ++ G +VPS
Sbjct: 14  IIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPS 73
Query: 71  EVTVSLIQKEMESS--DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
            + + L+++ M +S  D++ FLIDG+PR  +    F R +G +P +V+  DC  + M NR
Sbjct: 74  GIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIG-DPQLVICMDCSADTMTNR 132
Query: 129 VL--NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
           +L  +R+   VDD   T+ KRL+ +   ++PVI YY  + +L+ INA GT +++F Q+
Sbjct: 133 LLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQL 190

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 112/178 (62%), Gaps = 5/178 (2%)
Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           + FVLGGPGSGKGTQC K+V+ +   HLS+G+LLR E+ S S  G  +   ++ G++VP 
Sbjct: 31  VIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPL 90
Query: 71  EVTVSLIQKEMESSDSK--KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR 128
           EV ++L+++ M     K   FLIDG+PR  +    FE+ +      V+ FD  EE M  R
Sbjct: 91  EVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEV-CPCLCVINFDVSEEVMRKR 149
Query: 129 VLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
           +L R E   RVDDN +T+ KR + F  L  PVI +Y ++ K+ TI+A GTVD IF++V
Sbjct: 150 LLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKV 207

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 8/174 (4%)
Query: 12  CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE 71
             +LG PG+GKGTQ  K+ +  G+  +S GEL RR I   ++ G      +  G +VPS+
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62
Query: 72  VTVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVN 127
           +T  L+   + + D+   F++DG+PRS E   A   ++   G + D VL F   EE ++ 
Sbjct: 63  LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122
Query: 128 RVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIF 181
           R+  R  GR DD  D +  R++V++    P++ YY  R +L T++AVGT+DE+F
Sbjct: 123 RLKGR--GRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 172

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 8/174 (4%)
Query: 12  CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE 71
             +LG PG+GKGTQ  K+ +  G+  +S GEL RR I   ++ G      +  G +VPS+
Sbjct: 23  VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 82
Query: 72  VTVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVN 127
           +T  L+   + + D+   F++DG+PRS E   A   ++   G + D VL F   EE ++ 
Sbjct: 83  LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 142
Query: 128 RVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIF 181
           R+  R  GR DD  D +  R++V++    P++ YY  R +L T++AVGT+DE+F
Sbjct: 143 RLKGR--GRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 192

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 111/187 (59%), Gaps = 10/187 (5%)
Query: 8   GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKI 67
           G  + F LG PG+GKGTQ +++ +  G   LS G++LR  +A  +  G  +   ++ G +
Sbjct: 4   GQAVIF-LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDL 62
Query: 68  VPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVL---FFDCPEEE 124
           VP ++ + LI++E+    +++ + DGFPR+     A +R++      +L     + PEEE
Sbjct: 63  VPDDLILELIREEL----AERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEE 118
Query: 125 MVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFE 182
           +V R+L R E  GR DDN +TVR+RL+V++    P++ YY  RG L  ++ +GT DE++ 
Sbjct: 119 LVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYA 178
Query: 183 QVRAVFA 189
           ++RA   
Sbjct: 179 RIRAALG 185

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 33/209 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           +LG PG+GKGTQ  K+ KN+ + HL+ G++LR  +AS SE G  +  T+  GK+V  E+ 
Sbjct: 21  LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 80
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEP---DIVLFFDCPEEEMVNRV 129
           + LI+K +E+   K  FL+DGFPR+       + +M       D V+ F  P+  ++ R+
Sbjct: 81  LELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 140
Query: 130 LNR----NEG-------------------------RVDDNIDTVRKRLQVFKALNLPVIN 160
             R      G                         R DDN   ++ RL+ +     P++ 
Sbjct: 141 TGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVE 200
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFA 189
           YY++RG    I+A  T D +F  + A F+
Sbjct: 201 YYSKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 33/209 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           +LG PG+GKGTQ  ++ +N+ + HL+ G++LR  +AS SE G  +  T+  GK+V  E+ 
Sbjct: 21  LLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 80
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEP---DIVLFFDCPEEEMVNRV 129
           V LI+K +E+   K  FL+DGFPR+       + +M       D V+ F  P+  ++ R+
Sbjct: 81  VELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 140
Query: 130 LNR----NEG-------------------------RVDDNIDTVRKRLQVFKALNLPVIN 160
             R      G                         R DDN   ++ RLQ +     P+I 
Sbjct: 141 TGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIE 200
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFA 189
           YY +RG    I+A  T D +F  + A F+
Sbjct: 201 YYRKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 33/203 (16%)
Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PGSGKGTQ   + K++   HLS G+LLR      +E G  I N I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94
Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEP---DIVLFFDCPEEEMVNRV- 129
           SL+ +++++   KK F++DG+PR+ +      +++       D V +F+ P+E +VNR+ 
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRIS 154
Query: 130 ---LNRNEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINY 161
              +++  GR+                         DDN D ++KRL VFK+   P+I+Y
Sbjct: 155 GRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISY 214
Query: 162 YARRGKLYTINAVGTVDEIFEQV 184
           Y  +  L  ++A    +++ +++
Sbjct: 215 YKNKNLLINLDATQPANDLEKKI 237

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 27/205 (13%)
Query: 10  FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP 69
            I   LG PG+GKGTQ  ++ K  G  H+S G++LR  +   +  G      ++ G++VP
Sbjct: 1   MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVP 60
Query: 70  SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMV 126
            ++ ++LI++      +   + DGFPR+ +   A + ++   G + D VL F+ P+E ++
Sbjct: 61  DDLIIALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVI 118
Query: 127 NRV----LNRNEGRV------------------DDNIDTVRKRLQVFKALNLPVINYYAR 164
            R+    +N   G V                  DD  + ++KRL+V++    P+I YY +
Sbjct: 119 ERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKK 178
Query: 165 RGKLYTINAVGTVDEIFEQVRAVFA 189
           +G L  I+A   V+E++ QV  V  
Sbjct: 179 KGILRIIDASKPVEEVYRQVLEVIG 203

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 32/205 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           +LG PGSGKGT C +I +N+GL HLS+G  LR  I +++E G      I++  +VP  V 
Sbjct: 32  ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 91
Query: 74  VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR- 132
             L+  E+E+   + +L+DGFPR+     A ++I   E D+V+  + P E + +R+  R 
Sbjct: 92  TRLMMSELENRRGQHWLLDGFPRTLGQAEALDKI--CEVDLVISLNIPFETLKDRLSRRW 149
Query: 133 ---NEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYYAR 164
                GRV                         DD  + V  RL+ +K +  PVI  Y  
Sbjct: 150 IHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKS 209
Query: 165 RGKLYTINAVGTVDEIFEQVRAVFA 189
           RG L+  +   T ++I+  V  +F+
Sbjct: 210 RGVLHQFSGTET-NKIWPYVYTLFS 233

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           P    + G P SGKGTQC  I   Y L H+SAG+LLR EIA+ SE G      +++G++V
Sbjct: 5   PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLV 64
Query: 69  PSEVTVSLIQKEMESSDSKK--FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
           P E+ V+++++ +   D+++  +L+DG+PRS     A E  +   PD  +  D P+E +V
Sbjct: 65  PDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALE-TLEIRPDTFILLDVPDELLV 123
Query: 127 NRVLNR 132
            RV+ R
Sbjct: 124 ERVVGR 129

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 31/182 (17%)
Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            +LG PG+GKGTQ   I++ YG+  +S G++LR  + S SE G    + +  GK+V  E+
Sbjct: 4   ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 73  TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
            ++L+++ +   D +  FL+DGFPR+     A +   G   D VL FD P+E +V+R++ 
Sbjct: 64  VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVG 122
Query: 132 RN----EGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
           R      GRV                         DD  +TVRKRL  +  +  P+I YY
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
Query: 163 AR 164
           ++
Sbjct: 183 SK 184

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 31/182 (17%)
Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            +LG PG+GKGTQ   I++ YG+  +S G++LR  + S SE G    + +  GK+V  E+
Sbjct: 4   ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 73  TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
            ++L+++ +   D +  FL+DGFPR+     A +   G   D VL FD P+E +V+R++ 
Sbjct: 64  VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVG 122
Query: 132 RN----EGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
           R      GRV                         DD  +TVRKRL  +  +  P+I YY
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
Query: 163 AR 164
           ++
Sbjct: 183 SK 184

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 32/205 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           +LG PGSGKGT C +I +N+GL HLS+G  LR  I +++E G      I++  +VP  V 
Sbjct: 10  ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 69
Query: 74  VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR- 132
             L+  E+E+   + +L+DGFPR+     A ++I   E D+V+  + P E + +R+  R 
Sbjct: 70  TRLMMSELENRRGQHWLLDGFPRTLGQAEALDKI--CEVDLVISLNIPFETLKDRLSRRW 127
Query: 133 ---NEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYYAR 164
                GRV                         DD  + V  R + +K +  PVI  Y  
Sbjct: 128 IHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKS 187
Query: 165 RGKLYTINAVGTVDEIFEQVRAVFA 189
           RG L+  +   T ++I+  V  +F+
Sbjct: 188 RGVLHQFSGTET-NKIWPYVYTLFS 211

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +I++ Y + H+S G++ R  I + +E G    + + +G +VP EVT
Sbjct: 5   LMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRV 129
           + ++ + +   D +K FL+DGFPR+     A + +   +G + D VL     +EE++ R+
Sbjct: 65  IGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRL 124
Query: 130 LNRN------------------EG-----------RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                   EG           R+DD  +TV+ RL V      P+++
Sbjct: 125 TGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y+++G L  I+    + ++F  +  +   L+
Sbjct: 185 FYSQKGVLKDIDGQQDIKKVFVDINDLLGGLR 216

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 33/209 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PGSGKGT  ++I K++ L HLS+G+LLR  +   +E G      I +GK++P +V 
Sbjct: 11  IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVM 70
Query: 74  VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCP----EEEMVNRV 129
             L+  E+++     +L+DGFPR+     A +R    + D V+  + P    ++ +  R 
Sbjct: 71  TRLVLHELKNLTQYNWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTARW 128
Query: 130 LNRNEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYYAR 164
           ++   GRV                         DD  +TV KRL+ ++A   PV+ YY +
Sbjct: 129 IHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRK 188
Query: 165 RGKLYTINAVGTVDEIFEQVRAVFAALKL 193
           +G L T +   T ++I+  V A F   KL
Sbjct: 189 KGVLETFSGTET-NKIWPHVYA-FLQTKL 215

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 33/211 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  KIV  YG+ H+S G++ R  +   +  G      +  G +VP EVT
Sbjct: 5   LMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPE----EEM 125
           + ++++ +   D +  FL+DGFPR+     A E ++   G + D V+  D  +    E +
Sbjct: 65  IGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERL 124
Query: 126 VNRVLNRNEG-------------------------RVDDNIDTVRKRLQVFKALNLPVIN 160
             R + RN G                         R DDN  TV  RL+V      P+++
Sbjct: 125 TGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191
           +Y ++G L  IN    ++++F  +R +   L
Sbjct: 185 FYEQKGYLRNINGEQDMEKVFADIRELLGGL 215

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 33/208 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +IV+ YG  H+S G++ R  I   +E G    + + +G +VP EVT
Sbjct: 5   LMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +  SD    FL+DGFPR+     A +++   MG + + VL     +EE++ R+
Sbjct: 65  IGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARL 124
Query: 130 LNRN------------------EG-----------RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                   EG           R DDN DTV  RL+V      P++ 
Sbjct: 125 TGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLLA 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVF 188
           +Y  +  L  IN    + ++F+ +  + 
Sbjct: 185 FYDSKEVLVNINGQKDIKDVFKDLDVIL 212

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +IV+ YG+ H+S G++ R  +   +  G    + I +G++VP EVT
Sbjct: 5   LMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +  SD ++ FL+DGFPR+    E        MG   D V+     +EE++ R+
Sbjct: 65  IGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                         +G     R DDN +TV KRL+V      P++ 
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLA 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y  +  L  +N    + ++F  V+ +   LK
Sbjct: 185 FYDSKEVLVNVNGQQDIQDVFADVKVILGGLK 216

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 31/182 (17%)
Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            +LG P +GKGTQ   I++ YG+  +S G++LR  + S SE G    + +  GK+V  E+
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 73  TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
            ++L+++ +   D +  FL+DGFPR+     A +   G   D VL FD P+E +V+R++ 
Sbjct: 64  VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVG 122
Query: 132 RN----EGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
           R      GRV                         DD  +TVRKRL  +  +  P+I YY
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
Query: 163 AR 164
           ++
Sbjct: 183 SK 184

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            ++G PGSGKGTQC  I K YGL HLS G++LR  I + ++ G    + I+ G  V  E+
Sbjct: 9   ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 73  TVSLIQKEMESSDS-KKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNR 128
            + L++++ +       F++DGFPR+        +I+   G     V++F+  + E++ R
Sbjct: 69  VLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIER 128
Query: 129 VLNR----NEGRV-------------------------DDNIDTVRKRLQVFKALNLPVI 159
           +  R      GR+                         DDN + V+ RL VF     P++
Sbjct: 129 ISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLV 188
Query: 160 NYYARRGKLYTINAVGTVDEIFEQVRAVF 188
            +Y   G L  +NA     E+ EQ++ + 
Sbjct: 189 KFYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +IV++YG+ H+S G++ R  +   +  G    + I +G++VP EVT
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +   D ++ FL+DGFPR+    E         G   D V+  +  ++ ++ R+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                         +G     R DDN +TV KRL+V      P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y+ +G L  +N    + +++  V+ +   LK
Sbjct: 185 FYSEKGYLANVNGQQDIQDVYADVKDLLGGLK 216

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +IV++YG+ H+S G++ R  +   +  G    + I +G++VP EVT
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +   D ++ FL+DGFPR+    E         G   D V+  +  ++ ++ R+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                         +G     R DDN +TV KRL+V      P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y+ +G L  +N    + +++  V+ +   LK
Sbjct: 185 FYSEKGYLVNVNGQRDIQDVYADVKDLLGGLK 216

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +IV+ YG+ H+S G++ R  +   +  G    + I +G++VP EVT
Sbjct: 5   LMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +   D ++ FL+DGFPR+    E        MG   D V+     ++ ++ R+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                         +G     R DDN +TV KRL+V      P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y  +G L  +N    + +++  ++ +   LK
Sbjct: 185 FYDEKGYLVNVNGQQDIQDVYADLKVLLGGLK 216

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +IV++YG+ H+S G++ R  +   +  G    + I +G++VP EVT
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +   D ++ FL+DGFPR+    E         G   D V+  +  ++ ++ R+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                         +G     R DDN +TV KRL+V      P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y+ +G L  +N    + +++  V+ +   LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGGLK 216

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 31/182 (17%)
Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            +LG   +GKGTQ   I++ YG+  +S G++LR  + S SE G    + +  GK+V  E+
Sbjct: 4   ILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 73  TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
            ++L+++ +   D +  FL+DGFPR+     A +   G   D VL FD P+E +V+R++ 
Sbjct: 64  VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVG 122
Query: 132 RN----EGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
           R      GRV                         DD  +TVRKRL  +  +  P+I YY
Sbjct: 123 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
Query: 163 AR 164
           ++
Sbjct: 183 SK 184

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +IV++YG+ H+S G++ R  +   +  G    + I +G++VP EVT
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +   D ++ FL+DGFPR+    E         G   D V+  +  ++ ++ R+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                         +G     R DDN +TV KRL+V      P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y+ +G L  +N    + +++  V+ +   LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLEGLK 216

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +IV++YG+ H+S G++ R  +   +  G    + I +G++VP EVT
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +   D ++ FL+DGFPR+    E         G   D V+  +  ++ ++ R+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                         +G     R DDN +TV KRL+V      P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y+ +G L  +N    + +++  V+ +   LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGRLK 216

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 32/204 (15%)
Query: 12  CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE 71
             ++G PGSGKGT  ++I  ++ L HLS+G+LLR  +   +E G      I +GK++P +
Sbjct: 10  AVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDD 69
Query: 72  VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCP----EEEMVN 127
           V   L   E+++     +L+DGFPR+     A +R    + D V+  + P    ++ +  
Sbjct: 70  VMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTA 127
Query: 128 RVLNRNEGRV-------------------------DDNIDTVRKRLQVFKALNLPVINYY 162
           R ++   GRV                         DD  +TV KRL+ ++    PV+ YY
Sbjct: 128 RWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYY 187
Query: 163 ARRGKLYTINAVGTVDEIFEQVRA 186
            ++G L T +   T ++I+  V A
Sbjct: 188 QKKGVLETFSGTET-NKIWPYVYA 210

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ  +IV++YG+ H+S G++ R  +   +  G    + I +G++VP EVT
Sbjct: 5   LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +   D ++ FL+DGFPR+    E         G   D V+  +  ++ ++ R+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                         +G     R DDN +TV KRL+V      P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y+ +G L  +N    + +++  V+ +   LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGGLK 216

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 105/212 (49%), Gaps = 33/212 (15%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGT   +IV++YG+ H+S G++ R  +   +  G    + I +G++VP EVT
Sbjct: 5   LMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 74  VSLIQKEMESSDSKK-FLIDGFPRS---EENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
           + ++++ +   D ++ FL+DGFPR+    E         G   D V+  +  ++ ++ R+
Sbjct: 65  IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 130 LNR------------------------NEG-----RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                         +G     R DDN +TV KRL+V      P+++
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           +Y+ +G L  +N    + +++  V+ +   LK
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGGLK 216

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 100/214 (46%), Gaps = 42/214 (19%)
Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            +LG PG+GKGTQ   I + +G+  +S G+ LR  + + +  G        EGK+VP  +
Sbjct: 12  ILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSL 71
Query: 73  TVSLIQKEMESSD-SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
            + L+++ ++ +D +  +L DGFPR+     A +   G   D VL  D P  E++ R   
Sbjct: 72  IIGLVKERLKEADCANGYLFDGFPRTIAQADAXKE-AGVAIDYVLEIDVPFSEIIERXSG 130
Query: 132 RN------------------EG-----------RVDDNIDTVRKRLQVFKALNLPVINYY 162
           R                   EG           R DD  +TV+KRL V++A   P+I YY
Sbjct: 131 RRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 190
Query: 163 ---ARRG--------KLYTINAVGTVDEIFEQVR 185
              ARRG            I+ +G V+EI  +VR
Sbjct: 191 GDWARRGAENGLKAPAYRKISGLGAVEEIRARVR 224

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 34/194 (17%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ   + + +   HL+ G++LR +IA  ++ G      + +G +V  ++ 
Sbjct: 9   LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 68
Query: 74  VSLIQKEMESSDSKK--FLIDGFPRS-----------EENRAAFERIMGAEPDIVLF--- 117
           V++I+ E+ ++ + K  F++DGFPR+           +E     E+ +  + D  L    
Sbjct: 69  VNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 128
Query: 118 -----------------FDCPEEEMVNRVLNRN-EGRVDDNIDTVRKRLQVFKALNLPVI 159
                            F+ P+E+M + V       R DDN D ++KRL  + A   P++
Sbjct: 129 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIV 188
Query: 160 NYYARRGKLYTINA 173
           ++Y + G    ++A
Sbjct: 189 DFYKKTGIWAGVDA 202

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 34/194 (17%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ   + + +   HL+ G++LR +IA  ++ G      + +G +V  ++ 
Sbjct: 9   LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 68
Query: 74  VSLIQKEMESSDSKK--FLIDGFPRS-----------EENRAAFERIMGAEPDIVLF--- 117
           V++I+ E+ ++ + K  F++DGFPR+           +E     E+ +  + D  L    
Sbjct: 69  VNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 128
Query: 118 -----------------FDCPEEEMVNRVLNRN-EGRVDDNIDTVRKRLQVFKALNLPVI 159
                            F+ P+E+M + V       R DDN D ++KRL  + A   P++
Sbjct: 129 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIV 188
Query: 160 NYYARRGKLYTINA 173
           ++Y + G    ++A
Sbjct: 189 DFYKKTGIWAGVDA 202

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 34/194 (17%)
Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PG+GKGTQ   + + +   HL+ G++LR +IA  ++ G      + +G +V  ++ 
Sbjct: 9   LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 68
Query: 74  VSLIQKEMESSDSKK--FLIDGFPRS-----------EENRAAFERIMGAEPDIVLF--- 117
           V++I+ E+ ++ + K  F++ GFPR+           +E     E+ +  + D  L    
Sbjct: 69  VNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 128
Query: 118 -----------------FDCPEEEMVNRVLNRNEGRV-DDNIDTVRKRLQVFKALNLPVI 159
                            F+ P+E+M + V      ++ DDN D ++KRL  + A   P++
Sbjct: 129 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIV 188
Query: 160 NYYARRGKLYTINA 173
           ++Y + G    ++A
Sbjct: 189 DFYKKTGIWAGVDA 202

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            + G  GSGKGTQ   +   Y L H+ +G + R  I   +E G      I  G +VP ++
Sbjct: 4   LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 73  TVSLIQKEMESSDSKKFLIDGFPRSE-ENRAAFERIM--GAEPDIVLFFDCPEEEMVNRV 129
           T+ ++ + +ES     +L+DGFPR+  + +  FE +   G + + V+    P E   NR+
Sbjct: 64  TIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRI 123
Query: 130 LNR 132
           + R
Sbjct: 124 MGR 126

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            + G  GSGKGTQ   +   Y L H+ +G + R  I   +E G      I  G +VP ++
Sbjct: 4   LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 73  TVSLIQKEMESSDSKKFLIDGFPRSE-ENRAAFERIM--GAEPDIVLFFDCPEEEMVNRV 129
           T+ ++ + +ES     +L+DGFPR+  + +  FE +   G + + V+    P E   NR+
Sbjct: 64  TIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRI 123
Query: 130 LNR 132
           + R
Sbjct: 124 MGR 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	2e-93
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	4e-91
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	1e-90
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	1e-87
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	4e-87
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	3e-56
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	9e-56
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	1e-54
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	2e-54
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	2e-54
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	4e-54
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	6e-54
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	6e-54
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	4e-53
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	4e-53
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	6e-53
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	3e-52
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	3e-52
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	2e-51
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	3e-45
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	7e-26
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	1e-19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	3e-10
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	2e-09
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-08
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	3e-07
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	6e-07
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	7e-07
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	3e-05
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	7e-05
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	1e-04
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	2e-04
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	2e-04
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	4e-04
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	8e-04

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  269 bits (691), Expect = 2e-93
 Identities = 88/187 (47%), Positives = 122/187 (65%), Gaps = 4/187 (2%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           P + FVLGGPGSGKGTQCA IV+++G  HLSAG+LLR+E  S S+ G  I   IK G+IV
Sbjct: 6   PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65

Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMV 126
           PS VTV L++  ++++  K FL+DGFPR+EEN  ++E  M    +   VLFFDCPEE M 
Sbjct: 66  PSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMT 125

Query: 127 NRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
            R+L R    GR DDNI++++KR   F      VI++Y +  K+  I A   V+E++  V
Sbjct: 126 QRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDV 185

Query: 185 RAVFAAL 191
             +F ++
Sbjct: 186 ENLFKSM 192

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  263 bits (676), Expect = 4e-91
 Identities = 84/189 (44%), Positives = 119/189 (62%), Gaps = 5/189 (2%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           K   I FV+GGPGSGKGTQC KIV+ YG THLS G+LLR E++S S  G  +   +++G+
Sbjct: 7   KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQ 66

Query: 67  IVPSEVTVSLIQKEMESSD--SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124
           +VP E  + +++  M +    SK FLIDG+PR  +    FER +  +P ++L+ D   E 
Sbjct: 67  LVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRI-GQPTLLLYVDAGPET 125

Query: 125 MVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFE 182
           M  R+L R E  GRVDDN +T++KRL+ +     PVI +Y +RG +  +NA G+VD +F 
Sbjct: 126 MTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFS 185

Query: 183 QVRAVFAAL 191
           QV     AL
Sbjct: 186 QVCTHLDAL 194

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  262 bits (673), Expect = 1e-90
 Identities = 77/191 (40%), Positives = 118/191 (61%), Gaps = 5/191 (2%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           +   I F++GGPGSGKGTQC K+V+ YG THLS GELLR E+AS SE    I + ++ G 
Sbjct: 10  RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGD 69

Query: 67  IVPSEVTVSLIQKEMESSD--SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124
           +VPS + + L+++ M +S   ++ FLIDG+PR  +    F R +  +P +V+  DC  + 
Sbjct: 70  LVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRI-GDPQLVICMDCSADT 128

Query: 125 MVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFE 182
           M NR+L    +   VDD   T+ KRL+ +   ++PVI YY  + +L+ INA GT +++F 
Sbjct: 129 MTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFL 188

Query: 183 QVRAVFAALKL 193
           Q+     ++ L
Sbjct: 189 QLCTAIDSIFL 199

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  255 bits (654), Expect = 1e-87
 Identities = 82/186 (44%), Positives = 122/186 (65%), Gaps = 7/186 (3%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-SNSEYGTTILNTIKEGKI 67
             + FVLGGPG+GKGTQC K+VK+Y   HLSAG+LLR E   + S+YG  I N IKEG+I
Sbjct: 15  VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQI 74

Query: 68  VPSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124
           VP E+T++L++  +     ++  KFLIDGFPR  +   +FER +  E   +LFFDCPE+ 
Sbjct: 75  VPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDI 133

Query: 125 MVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFE 182
           M+ R+L R    GR DDNI++++KR   FK  ++PVI Y+  + K+  +    +V+++++
Sbjct: 134 MLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYK 193

Query: 183 QVRAVF 188
            V+   
Sbjct: 194 DVQDAI 199

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  253 bits (649), Expect = 4e-87
 Identities = 91/190 (47%), Positives = 126/190 (66%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKI 67
           P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  + +S+YG  I   IKEGKI
Sbjct: 3   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 62

Query: 68  VPSEVTVSLIQKEMESSD-----SKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDC 120
           VP E+T+SL+++EM+ +        KFLIDGFPR+++N   + + M   A+   VLFFDC
Sbjct: 63  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

Query: 121 PEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R    GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct: 123 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 182

Query: 179 EIFEQVRAVF 188
           E+F++V  +F
Sbjct: 183 EVFDEVVQIF 192

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  175 bits (445), Expect = 3e-56
 Identities = 64/180 (35%), Positives = 109/180 (60%), Gaps = 9/180 (5%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG+GKGTQ +++ +  G   LS G++LR  +A  +  G  +   ++ G +VP ++ +
Sbjct: 10  LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69

Query: 75  SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLN 131
            LI++E+    +++ + DGFPR+     A +R++   G     V+  + PEEE+V R+L 
Sbjct: 70  ELIREEL----AERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125

Query: 132 RNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189
           R E  GR DDN +TVR+RL+V++    P++ YY  RG L  ++ +GT DE++ ++RA   
Sbjct: 126 RAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  174 bits (443), Expect = 9e-56
 Identities = 63/179 (35%), Positives = 100/179 (55%), Gaps = 8/179 (4%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG+GKGTQ  K+ +  G+  +S GEL RR I   ++ G      +  G +VPS++T 
Sbjct: 26  LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 85

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVL 130
            L+   + + D+   F++DG+PRS E   A   ++   G + D VL F   EE ++ R+ 
Sbjct: 86  ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLK 145

Query: 131 NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189
            R  GR DD  D +  R++V++    P++ YY  R +L T++AVGT+DE+F +      
Sbjct: 146 GR--GRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG 200

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  171 bits (437), Expect = 1e-54
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 33/211 (15%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           +G PG+GKGTQ  +I++ Y + H+S G++ R  I + +E G    + + +G +VP EVT+
Sbjct: 6   MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVL 130
            ++ + +   D +K FL+DGFPR+     A + ++   G + D VL     +EE++ R+ 
Sbjct: 66  GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125

Query: 131 NR------------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINY 161
            R                   EG           R+DD  +TV+ RL V      P++++
Sbjct: 126 GRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDF 185

Query: 162 YARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           Y+++G L  I+    + ++F  +  +   L+
Sbjct: 186 YSQKGVLKDIDGQQDIKKVFVDINDLLGGLR 216

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  171 bits (436), Expect = 2e-54
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 33/211 (15%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           +G PG+GKGTQ  +IV+ YG+ H+S G++ R  +   +  G    + I +G++VP EVT+
Sbjct: 6   MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVL 130
            ++++ +   D ++ FL+DGFPR+     A E I+   G   D V+     ++ ++ R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLT 125

Query: 131 NR------------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINY 161
            R                    G           R DDN +TV KRL+V      P++++
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDF 185

Query: 162 YARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           Y  +G L  +N    + +++  ++ +   LK
Sbjct: 186 YDEKGYLVNVNGQQDIQDVYADLKVLLGGLK 216

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  172 bits (438), Expect = 2e-54
 Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 33/209 (15%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PGSGKGTQ   + K++   HLS G+LLR      +E G  I N I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVL 130
           SL+ +++++   KK F++DG+PR+ +      +++     + D V +F+ P+E +VNR+ 
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRIS 154

Query: 131 NR------------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINY 161
            R                                R DDN D ++KRL VFK+   P+I+Y
Sbjct: 155 GRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISY 214

Query: 162 YARRGKLYTINAVGTVDEIFEQVRAVFAA 190
           Y  +  L  ++A    +++ +++      
Sbjct: 215 YKNKNLLINLDATQPANDLEKKISQHIDG 243

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  170 bits (434), Expect = 4e-54
 Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 33/207 (15%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           +G PGSGKGTQC  I K YGL HLS G++LR  I + ++ G    + I+ G  V  E+ +
Sbjct: 11  IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVL 130
            L++++ +       F++DGFPR+        +I+   G     V++F+  + E++ R+ 
Sbjct: 71  GLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERIS 130

Query: 131 NR------------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINY 161
            R                    G           R DDN + V+ RL VF     P++ +
Sbjct: 131 GRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKF 190

Query: 162 YARRGKLYTINAVGTVDEIFEQVRAVF 188
           Y   G L  +NA     E+ EQ++ + 
Sbjct: 191 YEDLGILKRVNAKLPPKEVTEQIKKIL 217

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  171 bits (435), Expect = 6e-54
 Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 32/205 (15%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PGSGKGT C +I +N+GL HLS+G  LR  I +++E G      I++  +VP  V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92

Query: 75  SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR-- 132
            L+  E+E+   + +L+DGFPR+     A ++I   E D+V+  + P E + +R+  R  
Sbjct: 93  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKIC--EVDLVISLNIPFETLKDRLSRRWI 150

Query: 133 ----------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINYYARR 165
                             G           + DD  + V  RL+ +K +  PVI  Y  R
Sbjct: 151 HPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSR 210

Query: 166 GKLYTINAVGTVDEIFEQVRAVFAA 190
           G L+  +   T ++I+  V  +F+ 
Sbjct: 211 GVLHQFSGTET-NKIWPYVYTLFSN 234

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  170 bits (434), Expect = 6e-54
 Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 33/211 (15%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG+GKGTQ  K+ KN+ + HL+ G++LR  +AS SE G  +  T+  GK+V  E+ +
Sbjct: 22  LGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL 81

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVL 130
            LI+K +E+   K  FL+DGFPR+       + +M     + D V+ F  P+  ++ R+ 
Sbjct: 82  ELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141

Query: 131 NR------------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINY 161
            R                                R DDN   ++ RL+ +     P++ Y
Sbjct: 142 GRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEY 201

Query: 162 YARRGKLYTINAVGTVDEIFEQVRAVFAALK 192
           Y++RG    I+A  T D +F  + A F+   
Sbjct: 202 YSKRGIHSAIDASQTPDVVFASILAAFSKAT 232

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  168 bits (428), Expect = 4e-53
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 30/205 (14%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
            G P SGKGTQC  I   Y L H+SAG+LLR EIA+ SE G      +++G++VP E+ V
Sbjct: 11  SGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVV 70

Query: 75  SLIQKEMESSDSKK--FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132
           +++++ +   D+++  +L+DG+PRS     A E  +   PD  +  D P+E +V RV+ R
Sbjct: 71  NMVKERLRQPDAQENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGR 129

Query: 133 ----NEGRV---------------------DDNIDTVRKRLQVFKALNLPVINYYARRGK 167
                 G++                     DD  + V+ RL+ +      +++ Y     
Sbjct: 130 RLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTY--ENI 187

Query: 168 LYTINAVGTVDEIFEQVRAVFAALK 192
           +  +    TVD +F ++  +  ++ 
Sbjct: 188 IVKVQGDATVDAVFAKIDELLGSIL 212

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  168 bits (428), Expect = 4e-53
 Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 32/203 (15%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           +G PGSGKGT  ++I  ++ L HLS+G+LLR  +   +E G      I +GK++P +V  
Sbjct: 13  MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72

Query: 75  SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR-- 132
            L   E+++     +L+DGFPR+     A +R    + D V+  + P E +  R+  R  
Sbjct: 73  RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAY--QIDTVINLNVPFEVIKQRLTARWI 130

Query: 133 ----------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINYYARR 165
                             G           R DD  +TV KRL+ ++    PV+ YY ++
Sbjct: 131 HPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKK 190

Query: 166 GKLYTINAVGTVDEIFEQVRAVF 188
           G L T +   T ++I+  V A  
Sbjct: 191 GVLETFSGTET-NKIWPYVYAFL 212

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  167 bits (426), Expect = 6e-53
 Identities = 46/209 (22%), Positives = 95/209 (45%), Gaps = 34/209 (16%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           +G PG+GKGTQ   + + +   HL+ G++LR +IA  ++ G      + +G +V  ++ V
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69

Query: 75  SLIQKEMESSDSKK--FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRV 129
           ++I+ E+ ++ + K  F++DGFPR+       ++++   G   +  +     +E +V R+
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129

Query: 130 LNR------------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVIN 160
             R                   +            R DDN D ++KRL  + A   P+++
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189

Query: 161 YYARRGKLYTINAVGTVDEIFEQVRAVFA 189
           +Y + G    ++A      ++  +     
Sbjct: 190 FYKKTGIWAGVDASQPPATVWADILNKLG 218

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  165 bits (421), Expect = 3e-52
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 36/210 (17%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG P +GKGTQ   I++ YG+  +S G++LR  + S SE G    + +  GK+V  E+ +
Sbjct: 6   LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR- 132
           +L+++ +   D +  FL+DGFPR+     A +   G   D VL FD P+E +V+R++ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR 124

Query: 133 -----------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINYYAR 164
                             EG           R DD  +TVRKRL  +  +  P+I YY++
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184

Query: 165 RG-----KLYTINAVGTVDEIFEQVRAVFA 189
                  K   ++    V E+   +  +  
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEVRADLEKILG 214

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  165 bits (420), Expect = 3e-52
 Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 27/200 (13%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG+GKGTQ  ++ K  G  H+S G++LR  +   +  G      ++ G++VP ++ +
Sbjct: 6   LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65

Query: 75  SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLN 131
           +LI++      +   + DGFPR+ +   A + ++   G + D VL F+ P+E ++ R+  
Sbjct: 66  ALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123

Query: 132 RN----------------------EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLY 169
           R                         R DD  + ++KRL+V++    P+I YY ++G L 
Sbjct: 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILR 183

Query: 170 TINAVGTVDEIFEQVRAVFA 189
            I+A   V+E++ QV  V  
Sbjct: 184 IIDASKPVEEVYRQVLEVIG 203

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  164 bits (417), Expect = 2e-51
 Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 42/217 (19%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           LG PG+GKGTQ   I + +G+  +S G++LR  + + +  G      + EGK+VP  + +
Sbjct: 14  LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLII 73

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR- 132
            L+++ ++ +D    +L DGFPR+     A +   G   D VL  D P  E++ R+  R 
Sbjct: 74  GLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRR 132

Query: 133 -----------------NEG-----------RVDDNIDTVRKRLQVFKALNLPVINYYAR 164
                             EG           R DD  +TV+KRL V++A   P+I YY  
Sbjct: 133 THPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGD 192

Query: 165 RG-----------KLYTINAVGTVDEIFEQVRAVFAA 190
                            I+ +G V+EI  +VR    +
Sbjct: 193 WARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  148 bits (375), Expect = 3e-45
 Identities = 48/218 (22%), Positives = 80/218 (36%), Gaps = 43/218 (19%)

Query: 15  LGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
            G  GSGKGTQ   +   Y L H+ +G + R  I   +E G      I  G +VP ++T+
Sbjct: 6   FGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITI 65

Query: 75  SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLN 131
            ++ + +ES     +L+DGFPR+          +   G + + V+    P E   NR++ 
Sbjct: 66  PMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMG 125

Query: 132 R----NEGRV----------------------------DDNIDTVRKRLQVFK---ALNL 156
           R    N                                D +   + KR  ++       L
Sbjct: 126 RRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTL 185

Query: 157 PVINYYARRG-----KLYTINAVGTVDEIFEQVRAVFA 189
               YY             ++  G++D I + + A  A
Sbjct: 186 AAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQLA 223

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 97.2 bits (242), Expect = 7e-26
 Identities = 35/180 (19%), Positives = 71/180 (39%), Gaps = 8/180 (4%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSE 71
            + G PGSGK    AK++K  G   +   +++R+  +  ++ G  +++  K   +I    
Sbjct: 5   LITGMPGSGKSEF-AKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDG 63

Query: 72  VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
           V   L  +E+ +S+    + DG  RS      F+R +  +   ++    P +    R++ 
Sbjct: 64  VVARLCVEELGTSNHDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRMIE 121

Query: 132 RNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191
           R        I  + +R +    L +  +   A     Y I      +E   +   V   +
Sbjct: 122 RLRSDDSKEISELIRRDREELKLGIGEVIAMAD----YIITNDSNYEEFKRRCEEVTDRV 177

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 81.1 bits (200), Expect = 1e-19
 Identities = 18/153 (11%), Positives = 51/153 (33%), Gaps = 11/153 (7%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            + G  G GK T C ++      +    G+++   +              +   +    +
Sbjct: 6   IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESD---ELLALTWKNI 62

Query: 73  TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRV 129
           T   +   +  +D    ++D     +E  A  + +   +       +      EE++ R 
Sbjct: 63  TDLTVNFLLAQND---VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRD 119

Query: 130 LNRNEGRVDDNIDTVRKRLQVFKALNLPVINYY 162
             R   + +   +   + ++ F++  +    +Y
Sbjct: 120 ALR--KKDEQMGERCLELVEEFESKGIDERYFY 150

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 55.8 bits (134), Expect = 3e-10
 Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
             P I  + G PG GK T   ++    GL +++ G+L R E   +        +   +  
Sbjct: 10  LLPNI-LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGY------DEEYDCP 62

Query: 67  IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
           I+  +  V  +  +M        ++D            +        IV         + 
Sbjct: 63  ILDEDRVVDELDNQMR---EGGVIVDYHGC--------DFFPERWFHIVFVLRTDTNVLY 111

Query: 127 NRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
            R+  R   E ++ DNI       ++F+ L       Y         +     +E+   V
Sbjct: 112 ERLETRGYNEKKLTDNIQC-----EIFQVLYEEATASYKEEIVHQLPS--NKPEELENNV 164

Query: 185 RAVFAALK 192
             +   ++
Sbjct: 165 DQILKWIE 172

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 12/168 (7%)

Query: 16  GGPGSGKGTQCAKIV-KNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           G PGSGK T   + + KN G  +++  +  R+ I ++ E         KEG +  + +  
Sbjct: 9   GCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEGIV--TGMQF 65

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVL 130
              +  +   DS K  +I     + E R A+E      G + +    FD P  E+V R  
Sbjct: 66  DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWTELVKRNS 124

Query: 131 NRNEGRV-DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTV 177
            R    V  D + ++ K ++  + L LPV N    + K    +  GT+
Sbjct: 125 KRGTKAVPIDVLRSMYKSMR--EYLGLPVYNGTPGKPKAVIFDVDGTL 170

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 26/193 (13%), Positives = 59/193 (30%), Gaps = 12/193 (6%)

Query: 5   GGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE 64
           G + P +  V G P +GK T    +     L  LS     +  +     +     +    
Sbjct: 1   GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDA-FKEVMFDGLGWSDREWSRRVG 59

Query: 65  GKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPE 122
              +   +        ++S  S   +++   R + +    + +        I +      
Sbjct: 60  ATAI--MMLYHTAATILQSGQS--LIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASG 115

Query: 123 EEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLP-VINYYARRGKLYTINAVG----TV 177
           + +V R+L+R             +     + +     I      G L T++        +
Sbjct: 116 DVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDM 175

Query: 178 DEIFEQVRAVFAA 190
           + I + VR    +
Sbjct: 176 NAIVQWVRQHLQS 188

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Length = 212

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 59/226 (26%)

Query: 1   MQVKGGKGPFICFVLGGPGSGKGTQCAKIV---KNYGLTHL--------SAGELLRREI- 48
           M     KG FI F  G   SGK TQ   +V   KN  +           +    +  +  
Sbjct: 3   MTDDKKKGKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYL 61

Query: 49  ----------------ASNSEYGTTILNTIKEGKIVPSE--VTVSLI-Q--KEMESSDSK 87
                           A+  E+   I + + +G  V  +      +         +    
Sbjct: 62  KMENSMSNETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWC 121

Query: 88  KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR 147
                G  +               PD+V + + P     NR     E  + + ++T +K 
Sbjct: 122 MNPDQGLIK---------------PDVVFYLNVPPNYAQNRSDYGEE--IYEKVETQKKI 164

Query: 148 LQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL 193
            + +K          A       I+A   +++I   +      +K+
Sbjct: 165 YETYKHF--------AHEDYWINIDATRKIEDIHNDIVKEVTKIKV 202

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 46.6 bits (110), Expect = 6e-07
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 23/142 (16%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIV-KNYGLTHLSAGELLRRE---IASNSEYGTTILNTI 62
           KG  I  + G PG+GK +    I  +  G  HL  G+L++        ++E  T I+   
Sbjct: 9   KGINI-LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEK 67

Query: 63  KEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE 122
            E ++        L   E         ++D            E        +V+      
Sbjct: 68  DEDRL--------LDFMEPIMVSRGNHVVDYHSS--------ELFPERWFHMVVVLHTST 111

Query: 123 EEMVNRVLNRN--EGRVDDNID 142
           E +  R+  R   E +  +N++
Sbjct: 112 EVLFERLTKRQYSEAKRAENME 133

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 47.4 bits (112), Expect = 7e-07
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 16  GGPGSGKGTQCAKIV-KNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV 74
           G PGSGK T   + + KN G  +++  +  R+ I ++ E         KEG +    +  
Sbjct: 9   GCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEGIVT--GMQF 65

Query: 75  SLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVL 130
              +  +   DS K  +I     + E R A+E      G + +    FD P  E+V R  
Sbjct: 66  DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWTELVKRNS 124

Query: 131 NRNEGRVDDNIDTVRKR 147
            R    V  ++     +
Sbjct: 125 KRGTKAVPIDVLRSMYK 141

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Length = 216

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 43/214 (20%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA-GELLRREIASNSEYGTTILNTIKE- 64
           +G  I    G   +GK TQC  + K      L    +LL+       E  T I   I E 
Sbjct: 4   RGKLILIE-GLDRTGKTTQCNILYK-----KLQPNCKLLKFP-----ERSTRIGGLINEY 52

Query: 65  ---GKIVPSEVTVSL--------IQKEMESS-DSKKFLI-D-------------GFPRSE 98
                   S+  + L        I  +++      K ++ D             G    +
Sbjct: 53  LTDDSFQLSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMD 112

Query: 99  ENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPV 158
            +      +   +PD+ LF    + +         + R  + +    K  Q F  + L  
Sbjct: 113 LDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERY-ETVKFQEKVKQTF--MKLLD 169

Query: 159 INYYARRGKLYTINAVG-TVDEIFEQVRAVFAAL 191
                    +  ++     + E+   +  +   +
Sbjct: 170 KEIRKGDESITIVDVTNKGIQEVEALIWQIVEPV 203

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 12/151 (7%)

Query: 11  ICFVLGGPGSGKGTQCAKIV-----KNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG 65
           +  V G PG G  T     +     +      +S G ++  E+A      +      K  
Sbjct: 5   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVM-FEVAKEENLVSDRDQMRKMD 63

Query: 66  KIVPSEVTVSLIQKEMESSDSKKFLIDG-----FPRSEENRAAFERIMGAEPDIVLFFDC 120
                 +     +K  E +      +D       P+          +    PD+++  + 
Sbjct: 64  PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 123

Query: 121 PEEEMVNRVLN-RNEGRVDDNIDTVRKRLQV 150
             +E++ R ++     R  D   T+ +   +
Sbjct: 124 TGDEILMRRMSDETRVRDLDTASTIEQHQFM 154

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Length = 213

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 13/91 (14%)

Query: 111 EPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLY- 169
           +PDI  +     +  + R+                  +    +     + Y     ++Y 
Sbjct: 121 KPDITFYIRVSPDIALERIKKSKR---KIKPQEAGADIFPGLSPEEGFLKYQGLITEVYD 177

Query: 170 ---------TINAVGTVDEIFEQVRAVFAAL 191
                     I+   T  EI  Q+R     L
Sbjct: 178 KLVKDENFIVIDGTKTPKEIQIQIRKFVGEL 208

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Length = 214

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 32/228 (14%), Positives = 59/228 (25%), Gaps = 65/228 (28%)

Query: 10  FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE--YGTTILNTI----- 62
            I    G  G+GK T   K+          A     R +A+ +   YG ++   I     
Sbjct: 2   LIAIE-GVDGAGKRTLVEKLSG-----AFRA---AGRSVATLAFPRYGQSVAADIAAEAL 52

Query: 63  --KEGKIVPSEVTVSL------------IQKEMES---------SDS------KKFLIDG 93
             + G +  S   ++             IQ                S       +   + 
Sbjct: 53  HGEHGDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENA 112

Query: 94  FPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNE---GRVDD----NIDTV 144
             ++       E       +PD  +      E    R   R +   GR  D    + +  
Sbjct: 113 AGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQ 172

Query: 145 RKRLQVFKALNLPVINYYARRGKLY---TINAVGTVDEIFEQVRAVFA 189
           ++   V+  L        A +G       + A      +   +     
Sbjct: 173 QRTGAVYAEL--------AAQGWGGRWLVVGADVDPGRLAATLAPPDV 212

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Length = 229

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 76/237 (32%)

Query: 1   MQVKGGKGPFICFVLGGPGSGKGTQCAKIVKNY---GLTHL--------SAGELLRREIA 49
                    FI F  G  GSGK T     V +        +          GE +R+ + 
Sbjct: 19  YFQSNAMSAFITFE-GPEGSGKTTV-INEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVL 76

Query: 50  SNSEYG-----------------TTILNTIKEGKIVPS---------------EVTVSLI 77
             ++                     ++  +KEGK+V                  + V  +
Sbjct: 77  EGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEV 136

Query: 78  QKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN--EG 135
            + +      +F I+G                  PD+ ++ +   E    R++  +  + 
Sbjct: 137 -RALN-----EFAINGL----------------YPDLTIYLNVSAEVGRERIIKNSRDQN 174

Query: 136 RVDD-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191
           R+D  ++    K ++ ++ +       +    +  ++NA   ++ + E         
Sbjct: 175 RLDQEDLKFHEKVIEGYQEI------IHNESQRFKSVNADQPLENVVEDTYQTIIKY 225

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 27/197 (13%), Positives = 48/197 (24%), Gaps = 33/197 (16%)

Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           I  V G PG GK T  AK+ +      ++              YG  +L T  +      
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGIN---------NKIINYGDFMLATALKLGYAKD 53

Query: 71  ----------------EVTVSLIQKEMESSDSKKFLIDG-----FPRSEENRAAFERIMG 109
                                 I +E  +       ID       P           I  
Sbjct: 54  RDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE 113

Query: 110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLY 169
             P ++   +   + +++R       R  ++       L+                G   
Sbjct: 114 INPSVIFLLEADPKIILSRQKRD-TTRNRNDYSDESVILETINFARYAATASAVLAGSTV 172

Query: 170 TI--NAVGTVDEIFEQV 184
            +  N  G       ++
Sbjct: 173 KVIVNVEGDPSIAANEI 189

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 37.8 bits (87), Expect = 8e-04
 Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 19/198 (9%)

Query: 1   MQVKGGKGPFICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELLRREIASNSEYGTTI 58
           M +    G  I  + G PGSGK T    +    G+   H    + L   I          
Sbjct: 1   MNMTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHGRIDPWLP 59

Query: 59  LNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFF 118
            +  +   I+     V+       + +    ++DG  R +   A       A P   +  
Sbjct: 60  QSHQQNRMIMQIAADVA----GRYAKEGYFVILDGVVRPDWLPAFTAL---ARPLHYIVL 112

Query: 119 DCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
                E + R L+R    + D    V      F  L             L         D
Sbjct: 113 RTTAAEAIERCLDRGGDSLSDP-LVVADLHSQFADLGAF------EHHVLPVSGK--DTD 163

Query: 179 EIFEQVRAVFAALKLVTE 196
           +  +       + +   +
Sbjct: 164 QALQSAINALQSGRFRID 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.98
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.97
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.97
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.97
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.97
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.97
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.97
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.96
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.96
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.96
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.96
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.96
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.96
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.96
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.96
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.95
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.91
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.9
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.89
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.88
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.87
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.86
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.86
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.85
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.84
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.84
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.84
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.83
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.83
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.83
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.82
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.8
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.79
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.78
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.78
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.78
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.78
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.78
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.77
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.77
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.76
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.76
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.76
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.76
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.76
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.75
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.74
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.74
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.74
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.73
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.72
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.72
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.71
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.7
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.7
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.7
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.7
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.69
1via_A	175	Shikimate kinase; structural genomics, transferase	99.69
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.68
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.68
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.67
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.66
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.65
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.65
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.65
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.65
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.62
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.62
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.62
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.62
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.58
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.58
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.57
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.57
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.56
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.55
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.52
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.49
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.48
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.48
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.44
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.42
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.41
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.4
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.37
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	99.36
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.35
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.33
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.33
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.32
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.3
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.29
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.28
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.27
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.27
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.26
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.26
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.25
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	99.25
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	99.23
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.21
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.2
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.2
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.2
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.19
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	99.19
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.19
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.19
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.18
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	99.18
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.17
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.17
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.17
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.16
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.16
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.15
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.14
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.13
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.13
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.09
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	99.09
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.08
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.06
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.06
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.06
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.05
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.04
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.04
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.04
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.02
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.02
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.02
1g6h_A	257	High-affinity branched-chain amino acid transport	99.02
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.02
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.96
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.96
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.95
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.95
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.95
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.94
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.94
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.93
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.93
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.92
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.9
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.87
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.86
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.85
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.82
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.82
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.81
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.78
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.78
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.77
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.77
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.77
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.76
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.74
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.74
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.74
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.73
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.72
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.72
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.72
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.72
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.71
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.7
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.68
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.67
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.62
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.61
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.6
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.57
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.48
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.47
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.47
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.45
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	98.43
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.42
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.39
2og2_A	359	Putative signal recognition particle receptor; nuc	98.38
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.29
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.29
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.27
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.23
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.17
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.13
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.12
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.11
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.1
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.1
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.1
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.08
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.05
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.04
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.03
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.98
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.95
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.94
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.93
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.92
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.92
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.91
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.91
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.91
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.9
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.88
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.88
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.87
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.86
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.86
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.85
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.84
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.84
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.83
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.83
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.83
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.81
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.81
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.8
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.79
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.78
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.76
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.76
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.75
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.74
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.74
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.73
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.72
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.72
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.72
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.71
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.71
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.71
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.7
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.7
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.67
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.66
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.65
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.65
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.65
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.64
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.64
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.62
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.62
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.61
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.61
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.61
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.61
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.6
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.6
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.59
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.59
3bos_A	242	Putative DNA replication factor; P-loop containing	97.59
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.58
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.57
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.57
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.56
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.56
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.55
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.55
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.55
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.54
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.54
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.53
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.53
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.52
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.51
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.51
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.5
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.5
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.5
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.49
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.49
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.48
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.48
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.48
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.48
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.47
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.47
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.47
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.47
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.46
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.46
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.46
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.44
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.43
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.43
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.43
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.43
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.42
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.42
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.41
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.4
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.39
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.39
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.39
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.39
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.39
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.39
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.39
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.38
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.38
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.38
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.37
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.37
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.37
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.36
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.35
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.35
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.35
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.34
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.34
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.33
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.33
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.33
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.33
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.32
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.32
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.32
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.31
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.31
3pvs_A	447	Replication-associated recombination protein A; ma	97.3
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.3
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.3
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.3
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.3
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.3
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.3
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.29
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.29
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.28
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.28
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.28
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.28
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.27
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.27
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.27
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.27
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.27
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.27
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.26
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.25
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.25
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.25
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.25
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.25
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.25
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.24
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.24
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.24
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.23
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.23
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.23
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.22
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.22
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.22
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.22
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.21
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.21
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.2
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.2
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.2
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.2
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.19
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.18
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.18
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.17
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.17
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.17
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.17
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.17
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.16
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.16
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.16
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.16
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.15
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.15
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.15
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.15
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.14
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.13
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.13
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.13
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.13
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.12
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.12
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.12
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.11
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.11
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.11
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.11
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.1
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.1
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.09
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.09
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.09
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.08
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.08
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.08
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.07
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.07
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.06
2qgz_A	308	Helicase loader, putative primosome component; str	97.06
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.06
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.06
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.06
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.05
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.05
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.05
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.05
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.05
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.04
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.04
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.04
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.04
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.03
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.03
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.03
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.03
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.03
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.03
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.03
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.02
3co5_A	143	Putative two-component system transcriptional RES	97.02
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.02
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.02
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.02
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.02
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.01
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.01
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.01
2xxa_A	433	Signal recognition particle protein; protein trans	97.0
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.0
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.0
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.0
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.98
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.98
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.98
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.98
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.97
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	96.97
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.97
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.96
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.95
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.95
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.95
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.94
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.94
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.92
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.92
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.91
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.91
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.91
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.9
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.89
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.89
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.89
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.88
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.88
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.88
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.87
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.86
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.86
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.85
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.85
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.83
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.83
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.82
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.81
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.81
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.8
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.8
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.8
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.8
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.79
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.78
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.76
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.76
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.73
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.73
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.71
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	96.69
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.68
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.68

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=7.8e-37  Score=223.02  Aligned_cols=189  Identities=41%  Similarity=0.674  Sum_probs=169.1

Q ss_pred             ccCCCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287            3 VKGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME   82 (196)
Q Consensus         3 ~~~~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~   82 (196)
                      ....+++++|+|.|||||||+|+|+.|+++||+.+++.|+++|..+...++.+..+++++..|..++++.+...+.+.+.
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~  102 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMI  102 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999988886


Q ss_pred             cC--CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhH
Q 029287           83 SS--DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPV  158 (196)
Q Consensus        83 ~~--~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~  158 (196)
                      ..  ...+||+||||.+..|...|...+. .++.+|+|++|.+++.+|+..|.  .+|.+|+.+.+.+|+..|.+...++
T Consensus       103 ~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~-~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl  181 (217)
T 3umf_A          103 KLVDKNCHFLIDGYPRELDQGIKFEKEVC-PCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPV  181 (217)
T ss_dssp             HHTTTCSEEEEETBCSSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHH
T ss_pred             hccccccCcccccCCCcHHHHHHHHHhCC-ccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            42  3468999999999999999887654 78999999999999999999884  3577778999999999999999999


Q ss_pred             HHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          159 INYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       159 ~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +++|.+.+.++.||+++++++|+++|.+.++++.
T Consensus       182 ~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~G  215 (217)
T 3umf_A          182 IEHYKQQNKVITIDASGTVDAIFDKVNHELQKFG  215 (217)
T ss_dssp             HHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999988753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=8.7e-35  Score=211.24  Aligned_cols=178  Identities=33%  Similarity=0.676  Sum_probs=163.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      |+|+|.|||||||+|+|+.|+++||+.|++.|+++|+.+...++.+..+++++..|..++++.+..++.+.+..  ..+|
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~   78 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV   78 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence            58899999999999999999999999999999999999999999999999999999999999999999998875  4579


Q ss_pred             EEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC----------------------CCCCCcHHHH
Q 029287           90 LIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE----------------------GRVDDNIDTV  144 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~----------------------~~~~~~~~~~  144 (196)
                      |+||||.+..|...+...   ....++.+|+|++|.+++.+|+..|+.                      .|.+++.+.+
T Consensus        79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i  158 (206)
T 3sr0_A           79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI  158 (206)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred             EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence            999999999999888654   356899999999999999999998841                      3567789999


Q ss_pred             HHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          145 RKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      ++|+..|.+...++.++|.+.+.+..||+++++++|+++|.+.+.
T Consensus       159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~  203 (206)
T 3sr0_A          159 KKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG  203 (206)
T ss_dssp             HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999988774

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=8.1e-33  Score=202.41  Aligned_cols=179  Identities=34%  Similarity=0.627  Sum_probs=148.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SK   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~   87 (196)
                      .|.++|+|+|||||||+++.|+++||+.+++.|++++..+...++.+..+++++..|..+++..+...+.+.+...+ ..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~   87 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN   87 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999888643 36


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CCCC
Q 029287           88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GRVD  138 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~~~  138 (196)
                      +||+||||.+..|...|.. ....|+.+|+|++|++++.+|+..|..                             .|.+
T Consensus        88 g~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~D  166 (230)
T 3gmt_A           88 GYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDD  166 (230)
T ss_dssp             CEEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred             CeEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCC
Confidence            8999999999998888764 456899999999999999999999851                             3778


Q ss_pred             CcHHHHHHHHHHHHhchHhHHHHHHhc-----------CcEEEEeCCCCHhHHHHHHHHHH
Q 029287          139 DNIDTVRKRLQVFKALNLPVINYYARR-----------GKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      ++.+.+++|+..|.+...+++++|.+.           +.+..||+++++++|+++|.+++
T Consensus       167 D~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l  227 (230)
T 3gmt_A          167 DKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQ  227 (230)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC---------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHH
Confidence            899999999999999999999999973           67888999999999999988765

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.98  E-value=3e-30  Score=192.44  Aligned_cols=183  Identities=34%  Similarity=0.603  Sum_probs=162.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-   85 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-   85 (196)
                      +.|++|+|+|+|||||||+++.|++++|+.+++.+++++.....+++.+..+++++..+..+++......+...+.... 
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~  106 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC  106 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999999999999999999988999999999999999999999988888888887532 


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC----------------------------
Q 029287           86 SKKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE----------------------------  134 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~----------------------------  134 (196)
                      ..+||+|+||.+..|...+...   ....||.+|+|++|++++.+|+.+|..                            
T Consensus       107 ~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l  186 (243)
T 3tlx_A          107 KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPL  186 (243)
T ss_dssp             SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred             cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccc
Confidence            4779999999998887776654   346799999999999999999998852                            


Q ss_pred             -CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          135 -GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                       .|.+++.+.+++|+..|.....++.++|...+.++.||+++++++|+++|.+.+.
T Consensus       187 ~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          187 IQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence             3556789999999999999999999999998889999999999999999988764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.97  E-value=7.9e-29  Score=181.66  Aligned_cols=182  Identities=31%  Similarity=0.636  Sum_probs=160.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DSKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~~~   88 (196)
                      |.|+|+|+|||||||+++.|++.+|+.+++.|+++++.....++.+..+.+.+..+...++......+...+... ...+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence            468899999999999999999999999999999999999999999999999999999899888888888887753 2567


Q ss_pred             EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhcc-----------------------------CCC
Q 029287           89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRN-----------------------------EGR  136 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~-----------------------------~~~  136 (196)
                      +|+|+||....+...+...   ....||.+|+|++|++++.+|+.+|.                             .+|
T Consensus        81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3dl0_A           81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence            9999999998877766654   34579999999999999999999882                             135


Q ss_pred             CCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          137 VDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      .+++.+.+++|+..|.....+..++|...+.++.||+++++++++++|.+.+..+
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~  215 (216)
T 3dl0_A          161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL  215 (216)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            6778999999999999999999999998888999999999999999999888754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.97  E-value=1.6e-28  Score=179.94  Aligned_cols=182  Identities=30%  Similarity=0.631  Sum_probs=159.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DSKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~~~   88 (196)
                      |+|+|+|++||||||+++.|++.+|+.+++.|+++++.....++.+..+.+.+..+...++......+...+... ...+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence            478899999999999999999999999999999999999999999999999999999899888888888887753 2467


Q ss_pred             EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhcc-----------------------------CCC
Q 029287           89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRN-----------------------------EGR  136 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~-----------------------------~~~  136 (196)
                      +|+|+||....+...+...   ....||.+|+|++|++++.+|+.+|.                             .+|
T Consensus        81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3fb4_A           81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence            9999999998877766554   34568999999999999999999882                             134


Q ss_pred             CCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          137 VDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      .+++.+.+++|+..|.....+..++|.+.+.+++||++++++++.++|.+.+..+
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~  215 (216)
T 3fb4_A          161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL  215 (216)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence            5668899999999999999999999999888999999999999999999888654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.97  E-value=2.6e-28  Score=179.48  Aligned_cols=183  Identities=25%  Similarity=0.534  Sum_probs=153.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh-cC-
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME-SS-   84 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~-~~-   84 (196)
                      +++++|+|+|++||||||+++.|++.+|+.+++.|+++++....+++.+..+++++..|...++......+...+. .. 
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~   81 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA   81 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence            3467899999999999999999999999999999999998888888899999999998888888888887777765 21 


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC---------------------------
Q 029287           85 DSKKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE---------------------------  134 (196)
Q Consensus        85 ~~~~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~---------------------------  134 (196)
                      .+.+||+|+|+.+..+...+...   .+..||++||||+|++++.+|+..|..                           
T Consensus        82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~  161 (220)
T 1aky_A           82 CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEA  161 (220)
T ss_dssp             GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred             cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccc
Confidence            23678999999988776655433   356899999999999999999987741                           


Q ss_pred             --CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          135 --GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       135 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                        .|.+++.+.+.+|+..|.....++.++|.+...++.||+++++++|+++|.+.+.
T Consensus       162 l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  218 (220)
T 1aky_A          162 LVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  218 (220)
T ss_dssp             CBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence              2445677888999999999988888888777788899999999999999988764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.97  E-value=1.6e-27  Score=171.47  Aligned_cols=184  Identities=48%  Similarity=0.856  Sum_probs=152.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      .+++|+|+|++||||||+++.|++.+|+.+++.|+++++....+.+.+..+.+.+..+...+.......+...+....+.
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~   84 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGK   84 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            46799999999999999999999999999999999998887777888888999988888777777777777777654567


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCC--CCcEEEEeecChHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287           88 KFLIDGFPRSEENRAAFERIMGA--EPDIVLFFDCPEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYA  163 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~~~--~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (196)
                      .+|+|++|.+..++..+...+..  .|+++|||++|++++.+|+.+|..  ++.+++.+.+.+++..|.....+..+.|.
T Consensus        85 ~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~  164 (194)
T 1qf9_A           85 NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYN  164 (194)
T ss_dssp             CEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             CEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence            88999999998877766655442  689999999999999999998853  45566778888888888777777777776


Q ss_pred             hcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          164 RRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       164 ~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ....+++||++++++++.++|.+.+.+.
T Consensus       165 ~~~~~~~id~~~~~~~~~~~i~~~l~~~  192 (194)
T 1qf9_A          165 KFDKVKIIPANRDVNEVYNDVENLFKSM  192 (194)
T ss_dssp             HTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            6667788999999999999998887653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.97  E-value=7.9e-28  Score=178.36  Aligned_cols=185  Identities=34%  Similarity=0.617  Sum_probs=156.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-   85 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-   85 (196)
                      ..+++|+|+|++||||||+++.|++++|+.+++.++++++.....++.+..+++++..+..+++......+...+.... 
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~   93 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   93 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence            4557899999999999999999999999999999999998888888899999999988888888888888887776432 


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccC----------------------------
Q 029287           86 SKKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNE----------------------------  134 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~----------------------------  134 (196)
                      ..+||+|+|+.+..+...+...   ....|+.+|||++|++++.+|+..|..                            
T Consensus        94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l  173 (233)
T 1ak2_A           94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL  173 (233)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC
T ss_pred             cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccc
Confidence            3579999999988776655443   345799999999999999999988741                            


Q ss_pred             -CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          135 -GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                       .|.+++.+.+.+|+..|.....+..++|.....++.||+++++++|+++|.+.+..+
T Consensus       174 ~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          174 IRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  231 (233)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence             245567888999999999988888888887777889999999999999999888765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=3.9e-28  Score=178.17  Aligned_cols=180  Identities=32%  Similarity=0.615  Sum_probs=149.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-DS   86 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-~~   86 (196)
                      ++++|+|+|++||||||+++.|++++|+.+++.|+++++.....++.+..+++++..|...++......+...+... .+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~   83 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV   83 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence            35788999999999999999999999999999999999888888889999999998888888888888877776642 24


Q ss_pred             CcEEEeCCCCCHHHHHHHHH---HhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------
Q 029287           87 KKFLIDGFPRSEENRAAFER---IMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------  134 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~---~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------  134 (196)
                      .+||+|+||.+..|...+..   ..+..||.+|||++|++++.+|+..|..                             
T Consensus        84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~  163 (217)
T 3be4_A           84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLV  163 (217)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCB
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccc
Confidence            67999999999777666653   2356899999999999999999998741                             


Q ss_pred             CCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHH
Q 029287          135 GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAV  187 (196)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~  187 (196)
                      .+.++..+.+.+++..|.....++.++|.+...++.||+++++++|+++|.+.
T Consensus       164 ~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~  216 (217)
T 3be4_A          164 WRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI  216 (217)
T ss_dssp             CCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence            12234677888899999888888889998777889999999999999998764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.96  E-value=3.6e-27  Score=170.10  Aligned_cols=183  Identities=45%  Similarity=0.821  Sum_probs=148.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES--SD   85 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~--~~   85 (196)
                      ++++|+|+|++||||||+++.|++.+|+.+++.|++++.....+.+.+..+++.+..|...+.....+.+...+..  ..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   87 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNT   87 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999999999999999888777888888899888888777777666666555542  24


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287           86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYA  163 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (196)
                      +.++|+|++|....+...+...+ ..|+.+|||++|++++.+|+.+|..  ++.+++.+.+.+++..|.....++...|.
T Consensus        88 ~~~vi~d~~~~~~~~~~~~~~~~-~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  166 (196)
T 2c95_A           88 SKGFLIDGYPREVQQGEEFERRI-GQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYE  166 (196)
T ss_dssp             CSCEEEESCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999887766655544 5789999999999999999998742  33345677788888888777777777777


Q ss_pred             hcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          164 RRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       164 ~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ....++.||++++++++.++|.+.+..+
T Consensus       167 ~~~~~~~Id~~~~~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          167 KRGIVRKVNAEGSVDSVFSQVCTHLDAL  194 (196)
T ss_dssp             HHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             hcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            6667788999999999999999888654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.96  E-value=1.8e-27  Score=174.30  Aligned_cols=178  Identities=34%  Similarity=0.649  Sum_probs=150.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~   88 (196)
                      |.|+|+|++||||||+++.|++.+|+.+++.|+++++.+..+++.+..+++++..+...++......+...+.... ..+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~   80 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence            4688999999999999999999999999999999999888888888888888888888888888888887776432 257


Q ss_pred             EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CCCCC
Q 029287           89 FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GRVDD  139 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~~~~  139 (196)
                      ||+|+||.+..+...+.. ....||.+|+||+|++++.+|+.+|..                             .|.++
T Consensus        81 ~i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd  159 (214)
T 1e4v_A           81 FLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDD  159 (214)
T ss_dssp             EEEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred             EEEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCC
Confidence            899999998877666544 334799999999999999999987741                             35667


Q ss_pred             cHHHHHHHHHHHHhchHhHHHHHHhc-----CcEEEEeCCCCHhHHHHHHHHHH
Q 029287          140 NIDTVRKRLQVFKALNLPVINYYARR-----GKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      +.+.+.+|+..|.....++.++|.+.     ..++.||+++++++|+++|.+.+
T Consensus       160 ~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          160 QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            78899999999999988888888764     57889999999999999988765

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.96  E-value=1.7e-27  Score=175.46  Aligned_cols=179  Identities=26%  Similarity=0.487  Sum_probs=148.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      |+|+|+|++||||||+++.|++.+|+.+++.|++++.....+++.+..+++.+..|...++......+...+....+.+|
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v   80 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW   80 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence            47889999999999999999999999999999999987777788899999999888888888788878777764225689


Q ss_pred             EEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCC-------------------------------
Q 029287           90 LIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEG-------------------------------  135 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~-------------------------------  135 (196)
                      |+|+|+.+..+...+...   ....||.+|||++|++++.+|+.+|...                               
T Consensus        81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~  160 (223)
T 2xb4_A           81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSA  160 (223)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEEC
T ss_pred             EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccccc
Confidence            999999987776666543   3568999999999999999999988411                               


Q ss_pred             CCCCcHH-HHHHHHHHHHhchHhHHH---HHHh-----cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          136 RVDDNID-TVRKRLQVFKALNLPVIN---YYAR-----RGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       136 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      |.+++.+ .+++|+..|.....++.+   +|..     +..++.||+++++++|+++|.+.+
T Consensus       161 r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          161 RADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             CGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            1223456 888999999999877777   7765     567889999999999999988765

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.96  E-value=2.5e-27  Score=171.36  Aligned_cols=184  Identities=41%  Similarity=0.772  Sum_probs=147.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES--SD   85 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~--~~   85 (196)
                      .+++|+|+|++||||||+++.|++.+|+.+++.|+++++....+.+.+..+.+.+..|...+.......+.+.+..  ..
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence            4578999999999999999999999999999999999888777778888888888888777777776666655543  24


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC--CCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287           86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG--RVDDNIDTVRKRLQVFKALNLPVINYYA  163 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (196)
                      +..+|+|+++.+..+...+...+ ..|+++|||++|++++.+|+.+|...  +.+++.+.+.+|...|.....+...+|.
T Consensus        91 ~~~vi~dg~~~~~~~~~~l~~~~-~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  169 (199)
T 2bwj_A           91 TRGFLIDGYPREVKQGEEFGRRI-GDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE  169 (199)
T ss_dssp             CSCEEEETCCSSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999988776666544 37899999999999999999988421  2222456677777777777777667777


Q ss_pred             hcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          164 RRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       164 ~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      ....+++||++++++++.++|.+.+..++
T Consensus       170 ~~~~~~~id~~~~~e~v~~~i~~~l~~~~  198 (199)
T 2bwj_A          170 TKTQLHKINAEGTPEDVFLQLCTAIDSIF  198 (199)
T ss_dssp             HHSEEEEEETTSCHHHHHHHHHHHHHHHC
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            66677889999999999999998887653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.96  E-value=1.3e-26  Score=168.34  Aligned_cols=185  Identities=44%  Similarity=0.868  Sum_probs=147.8

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh-cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc-
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-SNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES-   83 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~-   83 (196)
                      ++.+++|+|+|++||||||+++.|++.+|+.+++.|++++.... .+...+..+++.+..|...+.......+.+.+.. 
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   91 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   91 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence            45678999999999999999999999999999999999887643 5566777788888777777776666655554432 


Q ss_pred             --CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287           84 --SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVI  159 (196)
Q Consensus        84 --~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (196)
                        .....+++|+++.+..+...+...+ ..|+++|||++|++++.+|+.+|.  .++.+++.+.+.+++..|.....+..
T Consensus        92 l~~g~~~~i~dg~~~~~~~~~~~~~~~-~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~  170 (203)
T 1ukz_A           92 VKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI  170 (203)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence              1225789999999888777666544 358999999999999999999874  23455678888888888888888888


Q ss_pred             HHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          160 NYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       160 ~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ++|.....++.||++++++++.++|.+.+...
T Consensus       171 ~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~  202 (203)
T 1ukz_A          171 EYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  202 (203)
T ss_dssp             HHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence            87776677888999999999999998887653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.96  E-value=4.3e-27  Score=170.62  Aligned_cols=180  Identities=34%  Similarity=0.688  Sum_probs=146.6

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS-   84 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~-   84 (196)
                      +..+++|+|+|++||||||+++.|++.+|+.+++.|++++......++.+..+++.+..+...+.......+.+.+... 
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~   96 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD   96 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc
Confidence            4566899999999999999999999999999999999999877888888888999888888888877777776665432 


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHH
Q 029287           85 DSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINY  161 (196)
Q Consensus        85 ~~~~~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (196)
                      .+.++|+|+++.+..+...+...+   ...|+.+|+|++|++++.+|+.+|  ++.+++.+.+++++..|.....++..+
T Consensus        97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~~~e~~~~r~~~~~~~~~~~~~~  174 (201)
T 2cdn_A           97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEY  174 (201)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHHHHHHHHHHHHTTTHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence            245789999999877766555432   356899999999999999999988  455567788888888888776666666


Q ss_pred             HHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          162 YARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       162 ~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      |  ...+++||++++++++.++|.+.+.
T Consensus       175 ~--~~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          175 Y--RDQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             T--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             h--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence            6  4467889999999999999877653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.96  E-value=4.7e-27  Score=173.49  Aligned_cols=183  Identities=32%  Similarity=0.572  Sum_probs=149.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      +.+++|+|+|++||||||+++.|++.+|+.+++.|++++.....+++.+..+++++..|...++......+.+.+.....
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~   84 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQ   84 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccC
Confidence            45688999999999999999999999999999999999988778888898899998888878877666666666553234


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc----CC-------------------------CC
Q 029287           87 KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN----EG-------------------------RV  137 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~----~~-------------------------~~  137 (196)
                      ..||+|+|+.+..+...+...  ..|+.+||||+|++++.+|+..|.    .+                         |.
T Consensus        85 ~~~vid~~~~~~~~~~~l~~~--~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~  162 (227)
T 1zd8_A           85 YSWLLDGFPRTLPQAEALDRA--YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRE  162 (227)
T ss_dssp             SCEEEESCCCSHHHHHHHHTT--SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred             CCEEEeCCCCCHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCC
Confidence            678999999887765554432  468999999999999999998763    11                         33


Q ss_pred             CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          138 DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +++.+.+++|+..|.....++.++|.+...++.||++ ++++++++|.+.+...+
T Consensus       163 ~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~  216 (227)
T 1zd8_A          163 DDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKV  216 (227)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence            4577889999999999988888888777778899998 99999999999887654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.96  E-value=1.7e-26  Score=166.30  Aligned_cols=183  Identities=50%  Similarity=0.906  Sum_probs=145.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh----
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKIVPSEVTVSLIQKEME----   82 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~----   82 (196)
                      ++++|+|+|++||||||+++.|++.+|+.+++.|++++....+ .+..+..+++.+..|...+.......+...+.    
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            3678999999999999999999999999999999998876543 44567777887777777776655544443332    


Q ss_pred             -cCCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHh
Q 029287           83 -SSDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLP  157 (196)
Q Consensus        83 -~~~~~~~iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~  157 (196)
                       ...+..+|+|+++.+..++..+...+.  ..|+.+|||++|++++.+|+.+|.  .+|.+++.+.+.+++..|.....+
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~  161 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP  161 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence             123578899999999877666655443  357889999999999999999874  256666788888899999999888


Q ss_pred             HHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          158 VINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       158 ~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      ...+|.+...+++||++++++++.++|.+.+..
T Consensus       162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            888888777888999999999999999888764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.96  E-value=6.7e-27  Score=167.48  Aligned_cols=177  Identities=36%  Similarity=0.735  Sum_probs=144.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      .+++|+|+|++||||||+++.|++.+|+.+++.|++++.....+.+.+..+++.+..+...++......+...+..    
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~----   78 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE----   78 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS----
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC----
Confidence            3578999999999999999999999999999999999987777888888899998888888877777766666543    


Q ss_pred             cEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHH
Q 029287           88 KFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYY  162 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (196)
                      ++|+|+++.+..+...+...+   +..|+.+|||++|++++.+|+.+|.  .++.+++.+.+.+++..|.....+..+.|
T Consensus        79 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~  158 (186)
T 3cm0_A           79 RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYY  158 (186)
T ss_dssp             EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999877665544322   2358999999999999999999874  24566678888888888887767777777


Q ss_pred             HhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          163 ARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       163 ~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      .....+++||++++++++.++|.+.+
T Consensus       159 ~~~~~~~~id~~~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          159 EARGVLKRVDGLGTPDEVYARIRAAL  184 (186)
T ss_dssp             HHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             HhcCcEEEEECCCCHHHHHHHHHHHh
Confidence            76666888999999999999987765

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.95  E-value=6.6e-26  Score=166.80  Aligned_cols=184  Identities=32%  Similarity=0.623  Sum_probs=143.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS--   84 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~--   84 (196)
                      +.|++|+|+|++||||||+++.|++++|+.+++.|++++.....+++.+..+++++..|...++......+...+...  
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence            356789999999999999999999999999999999999877888889999999998888888776666565555421  


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-------------------------CCCCC
Q 029287           85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-------------------------GRVDD  139 (196)
Q Consensus        85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-------------------------~~~~~  139 (196)
                      ...++|+|||+.+..+...+.. .+..|+++||||+|++++.+|+..|..                         .+..+
T Consensus        83 ~~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d  161 (222)
T 1zak_A           83 QENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD  161 (222)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred             cCCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Confidence            1356888999998766655543 345789999999999999999987631                         12234


Q ss_pred             cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      ..+.+.+|+..|.....++..+|..  .++.||++++++++.++|.+.+..++.
T Consensus       162 ~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~l~  213 (222)
T 1zak_A          162 TEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSILE  213 (222)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhhcc
Confidence            5667777777777665665555533  578899999999999999988876653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.91  E-value=4e-22  Score=148.78  Aligned_cols=183  Identities=33%  Similarity=0.587  Sum_probs=140.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      +|.+|+|+|++||||||+++.|++++|+..++.|++++.......+.+..+...+..+...+.....+.+...+......
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~  105 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ  105 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence            46799999999999999999999999999999999988766555566666776666677677766666666555433345


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-----------------------------CCCC
Q 029287           88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-----------------------------GRVD  138 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-----------------------------~~~~  138 (196)
                      .|++++++....+...+..  ...++++++||+|++++.+|+..|..                             ++..
T Consensus       106 ~~il~g~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~  183 (246)
T 2bbw_A          106 HWLLDGFPRTLGQAEALDK--ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED  183 (246)
T ss_dssp             CEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred             eEEEECCCCCHHHHHHHHh--hcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence            6889999877644333322  24688999999999999999977631                             1123


Q ss_pred             CcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          139 DNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      ++.+.+.+++..|.....++.++|.+.+.++.||++.+ ++++++|.+.+.+.+.
T Consensus       184 ~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~  237 (246)
T 2bbw_A          184 DKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKIT  237 (246)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSC
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCC
Confidence            35677788888888887788888888778899999988 9999999998877543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.90  E-value=2.6e-21  Score=136.75  Aligned_cols=173  Identities=17%  Similarity=0.237  Sum_probs=114.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCC----hhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNS----EYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD   85 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~   85 (196)
                      ++|+|.|++||||||+++.| +.+|+.+++.++++++......    +...........   .........+.+.+....
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~   77 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSN   77 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcC
Confidence            58899999999999999999 8999999999999887644321    111112221111   012233445555554445


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      ...+|+|++ ....++..+..... .|+.+|||++|++++.+|+..|.......+.+.+.++......+.  ... +...
T Consensus        78 ~~~vi~dg~-~~~~~~~~l~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~--~~~-~~~~  152 (179)
T 3lw7_A           78 HDLVVFDGV-RSLAEVEEFKRLLG-DSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLG--IGE-VIAM  152 (179)
T ss_dssp             CSCEEEECC-CCHHHHHHHHHHHC-SCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHT--HHH-HHHT
T ss_pred             CCeEEEeCC-CCHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccC--hHh-HHHh
Confidence            678999998 77777777777665 788999999999999999999842222245566555543222211  111 2222


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                       ..++|+++++++++.++|.+.+..++
T Consensus       153 -ad~vId~~~~~~~~~~~i~~~l~~~l  178 (179)
T 3lw7_A          153 -ADYIITNDSNYEEFKRRCEEVTDRVL  178 (179)
T ss_dssp             -CSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             -CCEEEECCCCHHHHHHHHHHHHHHHh
Confidence             23567888899999999999888765

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.89  E-value=2.5e-21  Score=140.39  Aligned_cols=171  Identities=17%  Similarity=0.268  Sum_probs=108.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH------------H
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT------------V   74 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~   74 (196)
                      ..+|+|+|++||||||+++.|++++  |..++..     ++ +.+++.+..+++.+..+........            .
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~-----~e-P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~   75 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT-----RE-PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV   75 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE-----ES-STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe-----eC-CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            3588999999999999999999998  3333221     11 3456778888888877665543211            1


Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCHH------------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC--CCCC
Q 029287           75 SLIQKEMESSDSKKFLIDGFPRSEE------------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE--GRVD  138 (196)
Q Consensus        75 ~~i~~~l~~~~~~~~iid~~~~~~~------------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~  138 (196)
                      ..+...+.  .+..+|+|+|..+..            ....+...  -.+.||++||||+|++++.+|+.+|+.  +|.+
T Consensus        76 ~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e  153 (205)
T 4hlc_A           76 LKVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLD  153 (205)
T ss_dssp             HTHHHHHH--TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CC
T ss_pred             HHHHHHHH--cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchh
Confidence            22333333  467788999874321            11122221  246899999999999999999988732  2222


Q ss_pred             C-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          139 D-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       139 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      . +.+.+++..+.|.....      ..+.++.+||+++++++|.++|.+.+.+.++
T Consensus       154 ~~~~~f~~~v~~~Y~~l~~------~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~  203 (205)
T 4hlc_A          154 QEDLKFHEKVIEGYQEIIH------NESQRFKSVNADQPLENVVEDTYQTIIKYLE  203 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------SCCTTEEEEETTSCHHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHHHHH------hCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            1 22333333344444311      1245799999999999999999888876653

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.88  E-value=4.5e-21  Score=138.33  Aligned_cols=168  Identities=18%  Similarity=0.280  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH----------HHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE----------VTVSL   76 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~   76 (196)
                      |+|+|+|++||||||+++.|++++   |..++..     ++ +.+++.+..+++.+......+..          .....
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t-----re-P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK-----RE-PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-----ES-SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE-----EC-CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999988   5544332     11 23455666666666544332221          11233


Q ss_pred             HHHHHhcCCCCcEEEeCCCCCHHHH------------HHHHH--HhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           77 IQKEMESSDSKKFLIDGFPRSEENR------------AAFER--IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        77 i~~~l~~~~~~~~iid~~~~~~~~~------------~~~~~--~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                      +...+.  .+..+|+|+|..+....            ..+..  .....||+++|||+|++++.+|...+  +|.+ +.+
T Consensus        75 I~~~L~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~--dr~e-~~e  149 (197)
T 3hjn_A           75 IKQYLS--EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFE-KRE  149 (197)
T ss_dssp             HHHHHT--TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CTTC-CHH
T ss_pred             HHHHHH--CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc--Cccc-cHH
Confidence            444443  46788999987542211            11111  12468999999999999999997765  4444 345


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhh
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLV  194 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~  194 (196)
                      .+++..+.|.....      ..+.++++||+++++++|.++|.+.+++.++.
T Consensus       150 f~~rv~~~y~~la~------~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl~l  195 (197)
T 3hjn_A          150 FLERVREGYLVLAR------EHPERIVVLDGKRSIEEIHRDVVREVKRRWKL  195 (197)
T ss_dssp             HHHHHHHHHHHHHH------HCTTTEEEEETTSCHHHHHHHHHHHHSCC---
T ss_pred             HHHHHHHHHHHHHH------hCCCCEEEEcCCCCHHHHHHHHHHHHHHHhCC
Confidence            55555566655421      22457899999999999999999998776543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.87  E-value=3.4e-20  Score=135.16  Aligned_cols=170  Identities=17%  Similarity=0.231  Sum_probs=114.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCC--CCCHHHH----------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGK--IVPSEVT----------   73 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~----------   73 (196)
                      .++|+|+|++||||||+++.|+++++   +.++..     +. +.+++.|..+++++..+.  .......          
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~-----~~-p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~   79 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT-----RE-PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQ   79 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE-----ES-SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc-----cC-CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            47888999999999999999999984   433322     11 246677888888887653  2222111          


Q ss_pred             --HHHHHHHHhcCCCCcEEEeCCCCCH------------HHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC-CC
Q 029287           74 --VSLIQKEMESSDSKKFLIDGFPRSE------------ENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE-GR  136 (196)
Q Consensus        74 --~~~i~~~l~~~~~~~~iid~~~~~~------------~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~  136 (196)
                        .+.+...+.  .+..+|+|+|..+.            .....+...  -.+.||++||||+|++++.+|+.+|.. ++
T Consensus        80 ~~~~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr  157 (213)
T 4edh_A           80 HLAGVIRPALA--RGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDR  157 (213)
T ss_dssp             HHHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCT
T ss_pred             HHHHHHHHHHH--CCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCc
Confidence              122333333  46788999976441            111122221  257899999999999999999998842 34


Q ss_pred             CCC-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          137 VDD-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       137 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      .+. +.+.+++..+.|....    ..  .+..+++||+++++++|.++|.+.+..++
T Consensus       158 ~E~~~~~~~~rv~~~y~~l~----~~--~~~~~~vIDa~~s~eeV~~~I~~~l~~~l  208 (213)
T 4edh_A          158 FEQEDRRFFEAVRQTYLQRA----AQ--APERYQVLDAGLPLAEVQAGLDRLLPNLL  208 (213)
T ss_dssp             TTTSCHHHHHHHHHHHHHHH----HH--CTTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHH----HH--CCCcEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            443 3566665566676652    12  24579999999999999999998887765

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.86  E-value=5.3e-21  Score=140.38  Aligned_cols=175  Identities=17%  Similarity=0.226  Sum_probs=109.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhH--HHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-----------H
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE--LLRREIASNSEYGTTILNTIKEGKIVPSEVT-----------V   74 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~   74 (196)
                      +.++|+|+|++||||||+++.|+++++..+++.+.  +..+. +.+++.+..+++++..+...+....           .
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~re-p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~  102 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTRE-PGGTRLGETLREILLNQPMDLETEALLMFAGRREHLA  102 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEES-SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecC-CCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            34788999999999999999999998432111110  01112 2456778888888877643222211           1


Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCH------------HHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccC-CCCCC
Q 029287           75 SLIQKEMESSDSKKFLIDGFPRSE------------ENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNE-GRVDD  139 (196)
Q Consensus        75 ~~i~~~l~~~~~~~~iid~~~~~~------------~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~~  139 (196)
                      +.+...+.  .+..+|+|+|..+.            .....+....  .+.||++||||+|++++.+|+.+|.. ++.+.
T Consensus       103 ~~i~p~l~--~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~  180 (227)
T 3v9p_A          103 LVIEPALA--RGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFES  180 (227)
T ss_dssp             HTHHHHHH--TTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---CC
T ss_pred             HHHHHHHH--cCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccchhh
Confidence            22333343  36778999987542            1111222211  47899999999999999999998842 33333


Q ss_pred             -cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          140 -NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       140 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                       +.+.+++....|.....    .  .+.++++||+++++++|.++|.+.+..|
T Consensus       181 ~~~ef~~rv~~~Y~~la~----~--~~~~~~vIDa~~s~eeV~~~I~~~l~~l  227 (227)
T 3v9p_A          181 ESDAFFARTRAEYLRRAQ----E--APHRFVIVDSSEPIAQIRKQLEGVLAAL  227 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHH----H--CTTTEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHH----H--hcCCEEEEeCCCCHHHHHHHHHHHHHhC
Confidence             34555555566665421    1  2457999999999999999999888754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.86  E-value=1.6e-20  Score=136.71  Aligned_cols=172  Identities=16%  Similarity=0.266  Sum_probs=113.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCcee-chhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCHH-----------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL-SAGELLRREIASNSEYGTTILNTIKEG-----KIVPSE-----------   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~-----------   71 (196)
                      .++|+++|++||||||+++.|++++....+ ++ .+. +. +.+++.+..+++++...     ......           
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~-re-p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~   79 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFT-RE-PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV   79 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEE-ES-SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eee-eC-CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence            368888999999999999999999832211 11 111 11 34577888888888732     222221           


Q ss_pred             -HHHHHHHHHHhcCCCCcEEEeCCCCCHH------------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC-C
Q 029287           72 -VTVSLIQKEMESSDSKKFLIDGFPRSEE------------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE-G  135 (196)
Q Consensus        72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~------------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~  135 (196)
                       .+...+...+.  .+..+|+|+|..+..            ....+...  -.+.||++||||+|++++.+|+.+|.. +
T Consensus        80 ~~~~~~i~paL~--~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~d  157 (213)
T 4tmk_A           80 QLVETVIKPALA--NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELD  157 (213)
T ss_dssp             HHHHHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHH--CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence             11123444444  467889999875421            11112221  256899999999999999999998842 3


Q ss_pred             CCCC-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          136 RVDD-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +.+. +.+.+++..+.|.....       ....+++||+++++++|+++|.+.+..++
T Consensus       158 r~E~~~~~f~~rv~~~y~~la~-------~~~~~~vIDa~~s~eeV~~~I~~~l~~~l  208 (213)
T 4tmk_A          158 RIEQESFDFFNRTRARYLELAA-------QDKSIHTIDATQPLEAVMDAIRTTVTHWV  208 (213)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHH-------TCTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHH-------HCCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            4433 45566555566665521       22578999999999999999999888765

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.84  E-value=2.7e-20  Score=137.38  Aligned_cols=173  Identities=14%  Similarity=0.223  Sum_probs=108.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC---CCCCHH-HH-----------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG---KIVPSE-VT-----------   73 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~-~~-----------   73 (196)
                      +++|+|+|++||||||+++.|++.++...++...+.+.  +.+++.+..+++++..+   ...... ..           
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~  104 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLV  104 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999984322221112222  24677888888888632   222221 11           


Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCH------------HHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC-CCCC
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSE------------ENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE-GRVD  138 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~------------~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~  138 (196)
                      ...+...+.  .+..+|+|+|..+.            .....+...  -.+.||++||||+|++++.+|+.+|.. ++.+
T Consensus       105 ~~~I~paL~--~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E  182 (236)
T 3lv8_A          105 ENVIKPALA--RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIE  182 (236)
T ss_dssp             HHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTT
T ss_pred             HHHHHHHHH--cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhh
Confidence            122333443  46788999976431            111122221  246899999999999999999998842 3433


Q ss_pred             C-cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          139 D-NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       139 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      . +.+.+++..+.|....       .....+++||+++++++|.++|.+.+..++
T Consensus       183 ~~~~~~~~rv~~~y~~la-------~~~~~~~vIDa~~sieeV~~~I~~~l~~~l  230 (236)
T 3lv8_A          183 KMDISFFERARERYLELA-------NSDDSVVMIDAAQSIEQVTADIRRALQDWL  230 (236)
T ss_dssp             TSCHHHHHHHHHHHHHHH-------HHCTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHH-------HHCCCEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            3 3555555556666542       112238899999999999999999887765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.84  E-value=6.7e-19  Score=126.40  Aligned_cols=166  Identities=20%  Similarity=0.310  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-------H----H
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-------V----S   75 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~----~   75 (196)
                      |+|+|+|++||||||+++.|++++   |+.+++.++      ......+..+++.+..|...+....       .    .
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999998   898888642      1223345556666555433222111       1    1


Q ss_pred             HHHHHHhcCCCCcEEEeCCC----------CC--HHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           76 LIQKEMESSDSKKFLIDGFP----------RS--EENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~----------~~--~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                      .+...+.  .+..+++|+|.          ..  ..+...+...  ....||.+|||++|++++.+|+.+|  ++.+ ..
T Consensus        75 ~i~~~l~--~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r--~~~~-~~  149 (195)
T 2pbr_A           75 KIIPDLK--RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK--NRFE-NK  149 (195)
T ss_dssp             THHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT--TCCC-CH
T ss_pred             HHHHHHh--CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc--Cccc-hH
Confidence            1222232  34567788543          22  1122222211  1237999999999999999999865  4433 44


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      +..+.....|....    ..+   ..+++||++++++++.++|.+.+.++++
T Consensus       150 ~~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~~~l~  194 (195)
T 2pbr_A          150 EFLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALSGVLR  194 (195)
T ss_dssp             HHHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence            44444344455442    122   4678899999999999999998877654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.84  E-value=1.5e-18  Score=128.01  Aligned_cols=175  Identities=17%  Similarity=0.234  Sum_probs=108.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCC--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH-HHHHHHh-
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS-LIQKEME-   82 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~l~-   82 (196)
                      ...++|+|+|++||||||+++.|++.++.  .++..      ..+..++.+..+++++..+.........- ....... 
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~   97 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH   97 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999863  33322      12345567788888887765433221111 1111111 


Q ss_pred             --------cCCCCcEEEe----------CCCCC--HHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC--CCCC
Q 029287           83 --------SSDSKKFLID----------GFPRS--EENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE--GRVD  138 (196)
Q Consensus        83 --------~~~~~~~iid----------~~~~~--~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~  138 (196)
                              ...+..+|+|          +++.+  .....++...  ....||++||||+|++++.+|+.+|..  ++.+
T Consensus        98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e  177 (229)
T 4eaq_A           98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLD  177 (229)
T ss_dssp             CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCC
T ss_pred             HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchh
Confidence                    0135678899          55543  2222222221  346899999999999999999998832  2332


Q ss_pred             CcH-HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          139 DNI-DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       139 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      ... +..++....|.....    .  .+..+++||++++++++.++|.+.+..++.
T Consensus       178 ~~~~~~~~rv~~~y~~l~~----~--~~~~~~vIDa~~s~eev~~~I~~~l~~~l~  227 (229)
T 4eaq_A          178 QEDLKFHEKVIEGYQEIIH----N--ESQRFKSVNADQPLENVVEDTYQTIIKYLE  227 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHTT----T--CTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHH----h--CCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence            222 233333344554421    1  134788999999999999999999887653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.83  E-value=4.1e-19  Score=125.17  Aligned_cols=151  Identities=14%  Similarity=0.111  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      ++|+|+|++||||||+++.|++.+|+.+++.+.+.....    .    ...            .... ...+.  .+..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~----~~~------------~~~~-~~~l~--~~~~v   58 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----G----NEK------------LFEH-FNKLA--DEDNV   58 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----C----HHH------------HHHH-HHHHT--TCCSE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----H----HHH------------HHHH-HHHHH--hCCCe
Confidence            588999999999999999999999999999887654321    0    000            0000 11111  23445


Q ss_pred             EEeCCCC---------------CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287           90 LIDGFPR---------------SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus        90 iid~~~~---------------~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~  154 (196)
                      ++|++..               .......+.. ....|+.+|||++|++++.+|+.+|  ++.....+.++.....|...
T Consensus        59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r--~r~~~~~~~~~~~~~~~~~~  135 (173)
T 3kb2_A           59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYREV  135 (173)
T ss_dssp             EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--SCSCCCHHHHHHHHHHHHHH
T ss_pred             EEeeeecchHHHHHHHHHhhHhhHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhHHHHHHHHHHHH
Confidence            5564331               1222223332 2247899999999999999999988  44444455555555566554


Q ss_pred             hHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhh
Q 029287          155 NLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       155 ~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~  192 (196)
                      ..    .+  ...+++||++ .+++++.++|.+.+.+..
T Consensus       136 ~~----~~--~~~~~~id~~~~~~~ev~~~I~~~~~~~~  168 (173)
T 3kb2_A          136 MS----NA--GLHTYSWDTGQWSSDEIAKDIIFLVELEH  168 (173)
T ss_dssp             HH----TC--SSCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred             Hh----hc--CCCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence            21    12  2467889988 499999999998887753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.83  E-value=4.2e-19  Score=128.52  Aligned_cols=161  Identities=16%  Similarity=0.200  Sum_probs=105.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHH---HHHHHHHHHhcC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV---TVSLIQKEMESS   84 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~l~~~   84 (196)
                      .+++|+|+|++||||||+++.|++.+|..+++.+++....          .......+....+..   ....+...+  .
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~l~~~~--~   84 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE----------NIRKMSEGIPLTDDDRWPWLAAIGERL--A   84 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHH----------HHHHHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchh----------hHHHHhcCCCCCchhhHHHHHHHHHHH--h
Confidence            3578999999999999999999999999999988764211          001111122222211   122233333  2


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      .+..+|+|+.......+..+... ...|+.+|||++|++++.+|+.+|...  ....+.+..+...+...        ..
T Consensus        85 ~~~~vivd~~~~~~~~~~~l~~~-~~~~~~vi~l~~~~e~~~~Rl~~R~~~--~~~~~~~~~~~~~~~~~--------~~  153 (202)
T 3t61_A           85 SREPVVVSCSALKRSYRDKLRES-APGGLAFVFLHGSESVLAERMHHRTGH--FMPSSLLQTQLETLEDP--------RG  153 (202)
T ss_dssp             SSSCCEEECCCCSHHHHHHHHHT-STTCCEEEEEECCHHHHHHHHHHHHSS--CCCHHHHHHHHHHCCCC--------TT
T ss_pred             cCCCEEEECCCCCHHHHHHHHHh-cCCCeEEEEEeCCHHHHHHHHHHhhcc--CCCHHHHHHHHHhcCCC--------CC
Confidence            35667899877666666655543 346678999999999999999998422  12344554444333322        12


Q ss_pred             cCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          165 RGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       165 ~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ....++||++++++++.++|.+.+...
T Consensus       154 ~~~~~~Id~~~~~~e~~~~I~~~l~~~  180 (202)
T 3t61_A          154 EVRTVAVDVAQPLAEIVREALAGLARL  180 (202)
T ss_dssp             STTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence            235678999999999999998888654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.83  E-value=4e-20  Score=135.20  Aligned_cols=172  Identities=16%  Similarity=0.155  Sum_probs=98.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH--------HHH-
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT--------VSL-   76 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~-   76 (196)
                      ..+++|+++|++||||||+++.|++.++. ...++-.+ .++ +.+++.+..+++++...........        .+. 
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~-tre-P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~   96 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVL-TRE-PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF   96 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEE-EES-SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEe-eeC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            34688999999999999999999998754 22221000 111 2356777778887765322322111        112 


Q ss_pred             ---HHHHHhcCCCCcEEEeCCCCCHH------------HHHHHHHHhC-CCCcEEEEeecChHHHHHHHhhccCCCCCC-
Q 029287           77 ---IQKEMESSDSKKFLIDGFPRSEE------------NRAAFERIMG-AEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-  139 (196)
Q Consensus        77 ---i~~~l~~~~~~~~iid~~~~~~~------------~~~~~~~~~~-~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-  139 (196)
                         +...+.  .+..+|+|+|..+..            ....+..... +.||++||||+|++++.+|+ ++  +|.+. 
T Consensus        97 ~~~I~paL~--~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~r--dr~E~~  171 (223)
T 3ld9_A           97 VKIIKPSLM--QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CK--NGYEFA  171 (223)
T ss_dssp             HHTHHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-------------------
T ss_pred             HHHHHHHHh--cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-cc--Cccccc
Confidence               333333  356789999875421            1122222222 68999999999999999999 44  44443 


Q ss_pred             cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +.+.+++..+.|.....    .+  +.++++||+++++++| ++|.+.+..++
T Consensus       172 ~~e~~~rv~~~y~~la~----~~--~~~~~vIDa~~sieeV-~~I~~~l~~~l  217 (223)
T 3ld9_A          172 DMEFYYRVRDGFYDIAK----KN--PHRCHVITDKSETYDI-DDINFVHLEVI  217 (223)
T ss_dssp             CHHHHHHHHHHHHHHHH----HC--TTTEEEEESSCSSSCC-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH----HC--CCCEEEEcCCCCHHHH-HHHHHHHHHHH
Confidence            35555555556655522    22  3579999999999999 99998887754

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.82  E-value=2.9e-19  Score=130.22  Aligned_cols=175  Identities=16%  Similarity=0.188  Sum_probs=115.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCC-CCCHHHH-----------HH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK-IVPSEVT-----------VS   75 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~-----------~~   75 (196)
                      +.++|+++|++||||||+++.|+++++...    .+++ ....+++.|..+++++.... .......           .+
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~-ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~   78 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLK-FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   78 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEE-SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEE-ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            347888899999999999999999998622    1112 22346778888888887643 2222111           12


Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCHHHHH-----------HHHHH--hCCCCcEEEEe-ecChHHHHHHHhhccCCCCCCcH
Q 029287           76 LIQKEMESSDSKKFLIDGFPRSEENRA-----------AFERI--MGAEPDIVLFF-DCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~~~~~~~~-----------~~~~~--~~~~p~~~i~l-d~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                      .+...+.  .+..+|+|+|..+.....           ++...  ..+.||++||| |+|++++.+|+..+ .+|.+ ..
T Consensus        79 ~I~paL~--~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~-~dr~E-~~  154 (216)
T 3tmk_A           79 KIKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG-DERYE-TV  154 (216)
T ss_dssp             HHHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS-CCTTC-CH
T ss_pred             HHHHHHH--cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC-ccccc-HH
Confidence            3334444  367889999876532211           11111  24689999999 99999999997644 24444 45


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHhcCcEEEEe-CCCCHhHHHHHHHHHHHhhhh
Q 029287          142 DTVRKRLQVFKALNLPVINYYARRGKLYTIN-AVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~-~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      +.+++..+.|.........  ..+.++++|| +++++++|.++|.+.+...+.
T Consensus       155 ~f~~rvr~~Y~~la~~~~~--~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~  205 (216)
T 3tmk_A          155 KFQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVEALIWQIVEPVLS  205 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--TTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccc--cCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            5555555667766432111  1356899999 899999999999998877654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.80  E-value=1.2e-19  Score=132.24  Aligned_cols=171  Identities=16%  Similarity=0.181  Sum_probs=104.4

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH----------
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS----------   75 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------   75 (196)
                      +..+++|+|+|++||||||+++.|+++++..+++.+ +++. ...+.+.+..+++++..+...+......          
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYF-PNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM   84 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEec-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            345689999999999999999999999876655552 2221 1123445555666665444443321111          


Q ss_pred             -HHHHHHhcCCCCcEEEeCCCCCHHHHH--------HHHH---HhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHH
Q 029287           76 -LIQKEMESSDSKKFLIDGFPRSEENRA--------AFER---IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDT  143 (196)
Q Consensus        76 -~i~~~l~~~~~~~~iid~~~~~~~~~~--------~~~~---~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~  143 (196)
                       .+...+.  .+..+|+|+|+.+.....        .+..   .....||.+|||++|++++.+|+.+|. ++.+ .. .
T Consensus        85 ~~i~~~l~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-~r~~-~~-~  159 (212)
T 2wwf_A           85 NEIKSLLL--KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE-EIYE-KV-E  159 (212)
T ss_dssp             HHHHHHHH--HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS-STTC-SH-H
T ss_pred             HHHHHHHh--CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc-cccc-HH-H
Confidence             1222222  245788999875421110        1111   112479999999999999999987642 3322 33 3


Q ss_pred             HHHHH-HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          144 VRKRL-QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       144 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      +.+++ ..|....        ....+++||++++++++.++|.+.+..+
T Consensus       160 ~~~~~~~~~~~~~--------~~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          160 TQKKIYETYKHFA--------HEDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             HHHHHHHHGGGGT--------TCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHh--------ccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            33333 3344431        1446788999999999999998887654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=1.2e-18  Score=125.97  Aligned_cols=168  Identities=14%  Similarity=0.164  Sum_probs=97.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      .+.+|+|.|++||||||+++.|++.+|+.+++.++++.....  ......+.+.   +...........+....   ...
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~i~~~~~~~---~~~~~~~~e~~~l~~l~---~~~   95 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KTVGELFTER---GEAGFRELERNMLHEVA---EFE   95 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SCHHHHHHHH---HHHHHHHHHHHHHHHHT---TCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--CcHHHHHHhc---ChHHHHHHHHHHHHHHh---hcC
Confidence            346899999999999999999999999999999988765422  1111111110   00000111112222222   234


Q ss_pred             cEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC---CCcHHHHHHHHHHHHhchHhHHHH
Q 029287           88 KFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV---DDNIDTVRKRLQVFKALNLPVINY  161 (196)
Q Consensus        88 ~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  161 (196)
                      .+|++   +.+.....+..+.     .++.+|||++|++++.+|+..++..|.   ..+.+.+.+++..+.....   ..
T Consensus        96 ~~vi~~ggg~~~~~~~~~~l~-----~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~---~~  167 (199)
T 3vaa_A           96 NVVISTGGGAPCFYDNMEFMN-----RTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRA---PF  167 (199)
T ss_dssp             SEEEECCTTGGGSTTHHHHHH-----HHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHH---HH
T ss_pred             CcEEECCCcEEccHHHHHHHH-----cCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHH---HH
Confidence            55666   2333333333333     268899999999999999982222232   2233333333322222222   23


Q ss_pred             HHhcCcEEEEeCCC-CHhHHHHHHHHHHHhhhh
Q 029287          162 YARRGKLYTINAVG-TVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       162 ~~~~~~~~~I~~~~-~~~~v~~~i~~~i~~~~~  193 (196)
                      |..  ..++||+++ +++++.++|.+.+.++++
T Consensus       168 y~~--ad~~Idt~~~s~ee~~~~I~~~l~~~l~  198 (199)
T 3vaa_A          168 YTQ--AQYIFNADELEDRWQIESSVQRLQELLE  198 (199)
T ss_dssp             HTT--SSEEEECCCCSSHHHHHHHHHHHHHHTT
T ss_pred             Hhh--CCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence            333  335677765 899999999999887764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.78  E-value=6e-18  Score=122.39  Aligned_cols=168  Identities=18%  Similarity=0.200  Sum_probs=100.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHH-----------H
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV-----------S   75 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~   75 (196)
                      ++++|+|+|++||||||+++.|++++ |+.+++....     ...++.+..+++.+..+.........           .
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~-----~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~   77 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP-----QRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS   77 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS-----CTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC-----CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999998 5766654211     01233455566666544333222110           1


Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCHHH--------HHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH
Q 029287           76 LIQKEMESSDSKKFLIDGFPRSEEN--------RAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR  145 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~~~~~~--------~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~  145 (196)
                      .+...+.  .+..+|+|+|+.+...        ...+...  ....||.+|||++|++++.+   +|..++.+ .. .+.
T Consensus        78 ~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d~~e-~~-~~~  150 (204)
T 2v54_A           78 FIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEEIYE-DV-TFQ  150 (204)
T ss_dssp             HHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSSTTC-CS-HHH
T ss_pred             HHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCccccc-HH-HHH
Confidence            1222222  3467889998854211        1111111  12479999999999999887   34222222 22 233


Q ss_pred             HHH-HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          146 KRL-QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       146 ~~~-~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      +++ ..|.....      .....+++||++++++++.++|.+.+...+.
T Consensus       151 ~rl~~~y~~~~~------~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~  193 (204)
T 2v54_A          151 QKVLQEYKKMIE------EGDIHWQIISSEFEEDVKKELIKNIVIEAIH  193 (204)
T ss_dssp             HHHHHHHHHHHT------TCSSCEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH------hCCCcEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            333 33444311      1134678999999999999999988877653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.78  E-value=2e-17  Score=118.45  Aligned_cols=165  Identities=15%  Similarity=0.166  Sum_probs=95.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHh-cCChhhHHHHHHhhcCCCCCH--HHHH----HH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIA-SNSEYGTTILNTIKEGKIVPS--EVTV----SL   76 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~----~~   76 (196)
                      |++|+|+|++||||||+++.|+++++     +.+++.++.+++... .....+.   +..  +...+.  ....    ..
T Consensus         1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~   75 (194)
T 1nks_A            1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKG   75 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999997     778887888765442 1111110   000  011111  1111    11


Q ss_pred             HHHHHhcCCCCcEEEeCCCCCHHH--------HHHHHHHhCCCCcEEEEeecChHHHHHH-Hhh--ccCCC-CCCcHHHH
Q 029287           77 IQKEMESSDSKKFLIDGFPRSEEN--------RAAFERIMGAEPDIVLFFDCPEEEMVNR-VLN--RNEGR-VDDNIDTV  144 (196)
Q Consensus        77 i~~~l~~~~~~~~iid~~~~~~~~--------~~~~~~~~~~~p~~~i~ld~~~~~~~~R-l~~--r~~~~-~~~~~~~~  144 (196)
                      +...+....+..+|+|+++....+        ...+.. +  .|+.+|||++|++++.+| +.+  |  ++ .....+.+
T Consensus        76 i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~vi~l~~~~~~~~~rr~~~~~R--~~~~~~~~~~~  150 (194)
T 1nks_A           76 IAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-I--NPSVIFLLEADPKIILSRQKRDTTR--NRNDYSDESVI  150 (194)
T ss_dssp             HHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHHCTTT--CCCCCCSHHHH
T ss_pred             HHHHhhccCCCEEEECCchhhccccccccCCCHHHHHh-c--CCCEEEEEeCCHHHHHHHHHhhccc--CCCCccCHHHH
Confidence            223331134567899987431111        122222 2  589999999999998866 666  5  33 22233322


Q ss_pred             H---HHHHHHHhchHhHHHHHHhcCcEEEE-eCCCCHhHHHHHHHHHH
Q 029287          145 R---KRLQVFKALNLPVINYYARRGKLYTI-NAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       145 ~---~~~~~~~~~~~~~~~~~~~~~~~~~I-~~~~~~~~v~~~i~~~i  188 (196)
                      .   .....|...    ...+. ...+++| |++++++++.++|.+.+
T Consensus       151 ~~~~~~~~~~~~~----~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          151 LETINFARYAATA----SAVLA-GSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHHHHH----HHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            2   112233322    22221 3567889 99999999999987764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.78  E-value=2.6e-18  Score=125.24  Aligned_cols=175  Identities=18%  Similarity=0.203  Sum_probs=96.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHH-----------H
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV-----------S   75 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~   75 (196)
                      .++++|+|+|++||||||+++.|+++++..+++...+ +. ...+.+.+..+++.+..+...+.....           .
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~   84 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RF-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP   84 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eC-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3467999999999999999999999886444333111 10 011233444455555443333322111           1


Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCHHH---------HHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHH
Q 029287           76 LIQKEMESSDSKKFLIDGFPRSEEN---------RAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTV  144 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~~~~~~---------~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~  144 (196)
                      .+...+.  .+..+|+|++..+...         ...+...  ....|+.+|||++|++++.+|+.++ .++.+ ..+..
T Consensus        85 ~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~~~-~~~~~  160 (215)
T 1nn5_A           85 LIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HERYE-NGAFQ  160 (215)
T ss_dssp             HHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------CTTC-SHHHH
T ss_pred             HHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-ccccc-hHHHH
Confidence            2223332  3456788976422110         1111111  1246899999999999999999643 23322 22222


Q ss_pred             HHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          145 RKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      +.....|.....      .....+++||++++++++.++|.+.+..++.
T Consensus       161 ~~~~~~~~~~~~------~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~  203 (215)
T 1nn5_A          161 ERALRCFHQLMK------DTTLNWKMVDASKSIEAVHEDIRVLSEDAIA  203 (215)
T ss_dssp             HHHHHHHHHHTT------CTTSCEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH------hCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            222223333211      0134678899999999999999888877653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.78  E-value=2.5e-17  Score=119.45  Aligned_cols=167  Identities=16%  Similarity=0.208  Sum_probs=97.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCC-----CC--------------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKI-----VP--------------   69 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~--------------   69 (196)
                      +++|+|+|++||||||+++.|++ +|+.+++.|++.+....++.+....+.+.......     ..              
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~   80 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence            46899999999999999999988 89999999988766433332222222222211100     00              


Q ss_pred             ----HHHHHHHH----HHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           70 ----SEVTVSLI----QKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        70 ----~~~~~~~i----~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                          ....++.+    .+.+.......+|+++.......       +....|.+|||++|++++.+|+.+|.    ..+.
T Consensus        81 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~-------~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~  149 (206)
T 1jjv_A           81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENK-------LTALCDRILVVDVSPQTQLARSAQRD----NNNF  149 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTT-------CGGGCSEEEEEECCHHHHHHHHC---------CH
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcC-------cHhhCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence                01112222    22222223346677763221111       12246899999999999999999873    2245


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHh----HHHHHHHHHHHhhhh
Q 029287          142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD----EIFEQVRAVFAALKL  193 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~----~v~~~i~~~i~~~~~  193 (196)
                      +.+.+++...    .+....+.. .. ++|+++++++    ++.+++.+.+.++..
T Consensus       150 e~~~~r~~~q----~~~~~~~~~-ad-~vIdn~~~~~~~~~~~~~~i~~~~~~~~~  199 (206)
T 1jjv_A          150 EQIQRIMNSQ----VSQQERLKW-AD-DVINNDAELAQNLPHLQQKVLELHQFYLQ  199 (206)
T ss_dssp             HHHHHHHHHS----CCHHHHHHH-CS-EEEECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc----CChHHHHHh-CC-EEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            5555554431    122222322 23 5788888999    999999888877654

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.78  E-value=7.4e-18  Score=121.80  Aligned_cols=169  Identities=22%  Similarity=0.198  Sum_probs=110.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH------------
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS------------   70 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~------------   70 (196)
                      .+.-|+|+|..||||||+++.|++ +|+++++.|.+.++...++.+....+.+.....     ..++.            
T Consensus         8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~   86 (210)
T 4i1u_A            8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED   86 (210)
T ss_dssp             SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence            456899999999999999999998 899999999999887777766555555544321     12221            


Q ss_pred             ------HHHHHHHHHHHh----cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           71 ------EVTVSLIQKEME----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        71 ------~~~~~~i~~~l~----~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                            ..+++.+.+.+.    ......+++|- |.-.+.     ..+...+|.+|++++|+++..+|+.+|+    ..+
T Consensus        87 ~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~-----~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g~s  156 (210)
T 4i1u_A           87 ARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVES-----RNWKARCDRVLVVDCPVDTQIARVMQRN----GFT  156 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTC-----HHHHHHCSEEEEEECCHHHHHHHHHHHH----CCC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-eccccc-----CCccccCCeEEEEECCHHHHHHHHHhcC----CCC
Confidence                  133444444443    22334556664 321110     1111247999999999999999999984    335


Q ss_pred             HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhhh
Q 029287          141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~~  193 (196)
                      .+.+.+++....+.    .+. ...+. ++|+++ ++.+++.+++...+.+++.
T Consensus       157 ~eea~~ri~~Q~~~----eek-~~~AD-~VIdN~~gsle~l~~qV~~l~~~~~~  204 (210)
T 4i1u_A          157 REQVEAIIARQATR----EAR-LAAAD-DVIVNDAATPDALAVQVDALHQRYLA  204 (210)
T ss_dssp             HHHHHHHHHHSCCH----HHH-HHTCS-EEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCh----HHH-HHhCC-EEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            56666555432221    111 12223 468888 9999999999988877654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.77  E-value=2e-17  Score=120.20  Aligned_cols=168  Identities=16%  Similarity=0.214  Sum_probs=94.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCc--eec----hhHHHHHHHhcCChhhHHHHHHhhcCC---CCCHH--------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLT--HLS----AGELLRREIASNSEYGTTILNTIKEGK---IVPSE--------   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~--~i~----~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~--------   71 (196)
                      +++|+|+|++||||||+++.|+++++..  ++.    .++.+++              .+..+.   .....        
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~--------------~~~~~~~~~~~~~~~~~~~~~~   69 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHD--------------IIKEAKKKDLLTPLTFSLIHAT   69 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHH--------------HHHHHTTTSCCCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHH--------------HHhccccccCCCHHHHHHHHHH
Confidence            4789999999999999999999999763  332    2222222              221111   01110        


Q ss_pred             ----HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHH--------HHHHH--hCCCCcEEEEeecChHHHHHHHh-hccC-C
Q 029287           72 ----VTVSLIQKEMESSDSKKFLIDGFPRSEENRA--------AFERI--MGAEPDIVLFFDCPEEEMVNRVL-NRNE-G  135 (196)
Q Consensus        72 ----~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~--------~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~-~r~~-~  135 (196)
                          .....+...+.  .+..+|+|+|+.+.....        .+...  ....|+++|||++|++++.+|+. +|.. .
T Consensus        70 ~r~~~~~~~i~~~l~--~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~  147 (213)
T 2plr_A           70 DFSDRYERYILPMLK--SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIK  147 (213)
T ss_dssp             HHHHHHHHTHHHHHH--TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHh--CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccc
Confidence                00011222222  356789999876532111        11111  23469999999999999999998 6631 1


Q ss_pred             CCCC------cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          136 RVDD------NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       136 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      +...      ..+.++.. ..|..........+.+...+++||++++++++.++|.+.+..++.
T Consensus       148 ~~~~g~~~~~~~d~~e~~-~~~~~r~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~~~  210 (213)
T 2plr_A          148 PQEAGADIFPGLSPEEGF-LKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGELID  210 (213)
T ss_dssp             TTTTTTTTCTTSCHHHHH-HHHHHHHHHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhH-HHHHHHHHHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence            2000      00001111 122222121122222222678899999999999999998877654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.77  E-value=2.3e-16  Score=111.48  Aligned_cols=164  Identities=12%  Similarity=0.151  Sum_probs=93.6

Q ss_pred             CcccCCCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH-------HHH
Q 029287            1 MQVKGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS-------EVT   73 (196)
Q Consensus         1 m~~~~~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~   73 (196)
                      |++... .+.+|+|+|++||||||+++.|++.+|..+++.+++.+..         .+... ..+....+       ...
T Consensus         1 m~~~~~-~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~~-~~g~~~~~~~~~~~~~~~   69 (175)
T 1knq_A            1 MSTTNH-DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEKM-ASGEPLNDDDRKPWLQAL   69 (175)
T ss_dssp             --CCCT-TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHHH-HTTCCCCHHHHHHHHHHH
T ss_pred             CCccCC-CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHHh-hcCcCCCccccccHHHHH
Confidence            644433 3478999999999999999999999999999987763210         00000 01111111       011


Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPD-IVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFK  152 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~-~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~  152 (196)
                      ...+...+.  .+..+|++.-......+..+..   ..++ .+|||++|++++.+|+.+|.  ........++.+...+.
T Consensus        70 ~~~~~~~~~--~~~~~vi~~~~~~~~~~~~l~~---~~~~~~vv~l~~~~e~~~~R~~~R~--~~~~~~~~~~~~~~~~~  142 (175)
T 1knq_A           70 NDAAFAMQR--TNKVSLIVCSALKKHYRDLLRE---GNPNLSFIYLKGDFDVIESRLKARK--GHFFKTQMLVTQFETLQ  142 (175)
T ss_dssp             HHHHHHHHH--HCSEEEEECCCCSHHHHHHHHT---TCTTEEEEEEECCHHHHHHHHHTST--TCCCCHHHHHHHHHHCC
T ss_pred             HHHHHHHHh--cCCcEEEEeCchHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHHHhcc--CCCCchHHHHHHHHhhh
Confidence            122222222  2346778743233333333322   1245 68999999999999999883  22223444443332222


Q ss_pred             hchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          153 ALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      ..      +|. ....++||++++++++.++|.+.+.
T Consensus       143 ~~------~~~-~~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          143 EP------GAD-ETDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             CC------CTT-CTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             Cc------ccC-CCCeEEEeCCCCHHHHHHHHHHHHh
Confidence            11      011 2246789999999999999887664

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.76  E-value=8.1e-18  Score=120.64  Aligned_cols=122  Identities=13%  Similarity=0.168  Sum_probs=73.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      +.+++|+|+|++||||||+++.|++.+|+.+++.+.+..................+..   .........+...+.  .+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~g   77 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--SG   77 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--TT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--CC
Confidence            3568999999999999999999999999999998766433221100001000000000   000111122333333  35


Q ss_pred             CcEEEeCCCCCHHHHHHHH--HHhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           87 KKFLIDGFPRSEENRAAFE--RIMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~--~~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      ..+|+|++.........+.  ......|+.+|||++|++++.+|+.+|.
T Consensus        78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~  126 (193)
T 2rhm_A           78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI  126 (193)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence            6788998873221212221  1124568899999999999999999874

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.76  E-value=2.3e-17  Score=120.66  Aligned_cols=168  Identities=21%  Similarity=0.242  Sum_probs=99.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-----CCCCCHH-----------
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-----GKIVPSE-----------   71 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~-----------   71 (196)
                      .+++|+|+|++||||||+++.|++ +|+.+++.|++.+....++......+.+....     ...+...           
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            468999999999999999999998 89999999988876543333333334333211     1111111           


Q ss_pred             -------HHHHHHH----HHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           72 -------VTVSLIQ----KEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        72 -------~~~~~i~----~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                             ...+.+.    ..+.......++++. +......      +...||.+|||++|++++.+|+.+|.    ..+
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~------~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~  150 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS------LYKKANRVLVVDVSPETQLKRTMQRD----DVT  150 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT------GGGGCSEEEEEECCHHHHHHHHHHHH----TCC
T ss_pred             HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC------ccccCCEEEEEECCHHHHHHHHHHcC----CCC
Confidence                   1112221    112211233444554 3221111      12358999999999999999999873    123


Q ss_pred             HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          141 IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      .+.+.++...   . .....+. .... ++||++++++++.++|.+.+..++.
T Consensus       151 ~~~~~~~~~~---~-~~~~~~~-~~ad-~vId~~~~~~~~~~~I~~~l~~~~~  197 (218)
T 1vht_A          151 REHVEQILAA---Q-ATREARL-AVAD-DVIDNNGAPDAIASDVARLHAHYLQ  197 (218)
T ss_dssp             HHHHHHHHHH---S-CCHHHHH-HHCS-EEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---c-CChHHHH-HhCC-EEEECCCCHHHHHHHHHHHHHHHHH
Confidence            4444444332   1 1111111 1222 5788888999999999888877654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.76  E-value=5.8e-18  Score=121.19  Aligned_cols=172  Identities=14%  Similarity=0.186  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh-
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME-   82 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~-   82 (196)
                      +++|+|+|++||||||+++.|+++++     +.+++.++++++........ ....+.... ...........+.+.+. 
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~i~~   80 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQMRKM-DPETQKRIQKMAGRKIAE   80 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGGSSC-CHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHHhcC-CHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999998     89999988887653221100 000000000 00000111111112121 


Q ss_pred             cCCCCcEEEeCCCCC--HHHH-----HHHHHHhCCCCcEEEEeecChHHHHH-HHhh--ccCCCCCCcHHHHHHHHHHHH
Q 029287           83 SSDSKKFLIDGFPRS--EENR-----AAFERIMGAEPDIVLFFDCPEEEMVN-RVLN--RNEGRVDDNIDTVRKRLQVFK  152 (196)
Q Consensus        83 ~~~~~~~iid~~~~~--~~~~-----~~~~~~~~~~p~~~i~ld~~~~~~~~-Rl~~--r~~~~~~~~~~~~~~~~~~~~  152 (196)
                      ......+|+|+.+..  ....     ..+....  .|+++|||++|++++.+ |+..  |  ++...+.+.+..+...+.
T Consensus        81 ~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~~~R--~r~~~~~~~~~~~~~~~~  156 (192)
T 1kht_A           81 MAKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSDETR--VRDLDTASTIEQHQFMNR  156 (192)
T ss_dssp             HHTTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTSSSC--SSSCCCHHHHHHHHHHHH
T ss_pred             hccCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhhccc--CCCcCCHHHHHHHHHHHH
Confidence            112456889986531  1000     0111112  48899999999999996 8877  5  444444444433222222


Q ss_pred             hchHhHHHHHHhcCcEEEE-eCCCCHhHHHHHHHHHH
Q 029287          153 ALNLPVINYYARRGKLYTI-NAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~I-~~~~~~~~v~~~i~~~i  188 (196)
                      .. ......+. ...+++| +.+++++++.++|.+.+
T Consensus       157 ~~-~~~~~~~~-~~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          157 CA-AMSYGVLT-GATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HH-HHHHHHHH-CCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HH-HHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            22 11122222 2345555 44466999999887765

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.76  E-value=2.9e-17  Score=115.79  Aligned_cols=161  Identities=13%  Similarity=0.150  Sum_probs=91.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      +++|+|+|++||||||+++.|++.+|+.+++.|+++++..  +......+..   .+...... ....+...+.   ...
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~---~~~~~~~~-~~~~~~~~l~---~~~   72 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAA---EGWPGFRR-RESEALQAVA---TPN   72 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHH---HHHHHHHH-HHHHHHHHHC---CSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHHHHHHH---cCHHHHHH-HHHHHHHHhh---cCC
Confidence            4689999999999999999999999999999988876642  1111111100   00000011 1111222232   233


Q ss_pred             EEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHh--hccCCCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287           89 FLID-G--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL--NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYA  163 (196)
Q Consensus        89 ~iid-~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (196)
                      +|++ +  .+.....+..+.     .++.+|||++|++++.+|+.  +|..++.....+...+++..+.....   ..+.
T Consensus        73 ~vi~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~---~~~~  144 (173)
T 1e6c_A           73 RVVATGGGMVLLEQNRQFMR-----AHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLRERE---ALYQ  144 (173)
T ss_dssp             EEEECCTTGGGSHHHHHHHH-----HHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHH---HHHH
T ss_pred             eEEECCCcEEeCHHHHHHHH-----cCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHH---HHHH
Confidence            4554 3  222223333332     25899999999999999998  66223333332222333322222211   1222


Q ss_pred             hcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287          164 RRGKLYTINAV-GTVDEIFEQVRAVF  188 (196)
Q Consensus       164 ~~~~~~~I~~~-~~~~~v~~~i~~~i  188 (196)
                      .  ..++||++ .+++++.++|.+.+
T Consensus       145 ~--~~~~Id~~~~~~~~~~~~i~~~l  168 (173)
T 1e6c_A          145 D--VAHYVVDATQPPAAIVCELMQTM  168 (173)
T ss_dssp             H--HCSEEEETTSCHHHHHHHHHHHT
T ss_pred             h--CcEEEECCCCCHHHHHHHHHHHh
Confidence            2  23578877 79999998887665

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.76  E-value=3.5e-17  Score=124.17  Aligned_cols=169  Identities=18%  Similarity=0.230  Sum_probs=103.3

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-----CCCCCH----------
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-----GKIVPS----------   70 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~----------   70 (196)
                      ++.|++|+|+|++||||||+++.|+ .+|+.+++.|++.++...++.+....+.+....     ...+..          
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~  150 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN  150 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence            3567899999999999999999999 579999999999876655444433333222211     000110          


Q ss_pred             --------HHHHHHH----HHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCC
Q 029287           71 --------EVTVSLI----QKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEG  135 (196)
Q Consensus        71 --------~~~~~~i----~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~  135 (196)
                              ...++.+    .+.+.   ......+|+++......       .+...+|.+|||++|++++.+|+.+|. +
T Consensus       151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~-------~~~~~~d~vI~l~a~~ev~~~Rl~~R~-g  222 (281)
T 2f6r_A          151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA-------GWQSMVHEVWTVVIPETEAVRRIVERD-G  222 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT-------TGGGGCSEEEEEECCHHHHHHHHHHHH-C
T ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc-------chHHhCCEEEEEcCCHHHHHHHHHHcC-C
Confidence                    0111111    11111   12235688888643211       112247899999999999999999884 2


Q ss_pred             CCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          136 RVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                         .+.+.+.+++...    .+...++ .... ++|+++++++++.++|.+.+..+.
T Consensus       223 ---~s~e~~~~ri~~q----~~~~~~~-~~AD-~vIdn~~s~eel~~~I~~~l~~l~  270 (281)
T 2f6r_A          223 ---LSEAAAQSRLQSQ----MSGQQLV-EQSN-VVLSTLWESHVTQSQVEKAWNLLQ  270 (281)
T ss_dssp             ---CCHHHHHHHHHTS----CCHHHHH-HTCS-EEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHc----CChHhhH-hhCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence               2344444443332    1112222 2233 568888899999999998887664

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.75  E-value=5.5e-17  Score=115.01  Aligned_cols=161  Identities=20%  Similarity=0.250  Sum_probs=89.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH-HhCCceechhHHHHHHHhcCCh-----hhHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK-NYGLTHLSAGELLRREIASNSE-----YGTTILNTIKEGKIVPSEVTVSLIQKEME   82 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~-~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~i~~~l~   82 (196)
                      |++|+|.|+|||||||+++.|++ .+|+.+++.+. ++......+.     ........       ........+...+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence            57899999999999999999999 68999999854 4443332111     10000000       01122344455552


Q ss_pred             c-CCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287           83 S-SDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVI  159 (196)
Q Consensus        83 ~-~~~~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (196)
                      . ..+..+|+|+++.+..++..+....  ...+..+|||++|++++.+|+.+|..  ...+.+.+.++...|.....   
T Consensus        74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~--~~~~~~~i~~~~~~~~~~~~---  148 (181)
T 1ly1_A           74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVLRSMYKSMREYLG---  148 (181)
T ss_dssp             SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG--GCCCHHHHHHHHHHHHHHHT---
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc--CCCCHHHHHHHHHHhhccCC---
Confidence            2 3467889999988876655554322  11345689999999999999998842  23467777777777766521   


Q ss_pred             HHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          160 NYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       160 ~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                           . ..++||++.+ +++...+...+.
T Consensus       149 -----~-~~~~id~~~~-~~v~~~i~~~l~  171 (181)
T 1ly1_A          149 -----L-PVYNGTPGKP-KAVIFDVDGTLA  171 (181)
T ss_dssp             -----C-CCC--------------------
T ss_pred             -----C-CccccCCCCC-ceeeehhhhhhh
Confidence                 1 1233676654 667776665553

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.74  E-value=9.7e-17  Score=115.91  Aligned_cols=167  Identities=14%  Similarity=0.183  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechh----HHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG----ELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD   85 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~   85 (196)
                      ++|+|+|++||||||+++.|+++++..++...    .+++... .. .........+        ...............
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~-~~-~~~~~~~~~~--------~~~~~r~~~~~~~~~   70 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYY-KD-LKKTVFKMQI--------YMLTARSKQLKQAKN   70 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHT-TC-HHHHHHHHHH--------HHHHHHHHHHC----
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHH-hC-ccccchhHHH--------HHHHHHHHHHHHhhc
Confidence            47899999999999999999999998665421    1111110 00 0000000000        000011111111111


Q ss_pred             CCcEEEeCCCCCHHHH---------------HHH---HH-H---h------CCCCcEEEEeecChHHHHHHHhhccCCCC
Q 029287           86 SKKFLIDGFPRSEENR---------------AAF---ER-I---M------GAEPDIVLFFDCPEEEMVNRVLNRNEGRV  137 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~---------------~~~---~~-~---~------~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~  137 (196)
                      ...+|+|+++.+....               ..+   .. .   +      ...|+.+|||++|++++.+|+.+|  +|.
T Consensus        71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R--~r~  148 (205)
T 2jaq_A           71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKR--GRS  148 (205)
T ss_dssp             --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHH--TCH
T ss_pred             cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHc--CCh
Confidence            2348899988652111               111   01 1   1      257999999999999999999887  332


Q ss_pred             CCc---HHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          138 DDN---IDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       138 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      ...   .+..+.....|..    ....|......++||++++++++.++|.+.+..+.
T Consensus       149 ~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~~  202 (205)
T 2jaq_A          149 EELLIGEEYWETLNKNYEE----FYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSIK  202 (205)
T ss_dssp             HHHHSCHHHHHHHHHHHHH----HHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC-
T ss_pred             hhhcCcHHHHHHHHHHHHH----HHHHccccCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            111   1222211222322    23333324567889999999999999998887654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.74  E-value=2.7e-17  Score=115.46  Aligned_cols=157  Identities=15%  Similarity=0.245  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      |+|+|+|++||||||+++.|++.+|+.+++.+++.+....  .    .+.+.+.. +..... .....+...+..  ...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g--~----~~~~~~~~~~~~~~~-~~~~~~l~~l~~--~~~   71 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG--L----SIPQIFEKKGEAYFR-KLEFEVLKDLSE--KEN   71 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--S----CHHHHHHHSCHHHHH-HHHHHHHHHHTT--SSS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC--C----CHHHHHHHhChHHHH-HHHHHHHHHHhc--cCC
Confidence            4789999999999999999999999999999888766432  1    12222211 111111 111222223331  334


Q ss_pred             EEEe-CC--CCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc--HHHHHHHHHHHHhchHhHHHHHH
Q 029287           89 FLID-GF--PRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN--IDTVRKRLQVFKALNLPVINYYA  163 (196)
Q Consensus        89 ~iid-~~--~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  163 (196)
                      +|++ +.  +.....+..+.     .++.+|||++|++++.+|+.+|. .|....  .+.+.+   .|...    ...+.
T Consensus        72 ~Vi~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~~~~i~~---~~~~~----~~~~~  138 (168)
T 2pt5_A           72 VVISTGGGLGANEEALNFMK-----SRGTTVFIDIPFEVFLERCKDSK-ERPLLKRPLDEIKN---LFEER----RKIYS  138 (168)
T ss_dssp             EEEECCHHHHTCHHHHHHHH-----TTSEEEEEECCHHHHHHHCBCTT-CCBGGGSCGGGTHH---HHHHH----HHHHT
T ss_pred             eEEECCCCEeCCHHHHHHHH-----cCCEEEEEECCHHHHHHHHhCCC-CCCCCcchHHHHHH---HHHHH----HHHHH
Confidence            5554 31  12222222221     37899999999999999998763 232211  112222   23222    11233


Q ss_pred             hcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          164 RRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       164 ~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      . ..+.+ +++.+++++.++|.+.+.+
T Consensus       139 ~-~~~~i-~~~~~~~~~~~~i~~~l~~  163 (168)
T 2pt5_A          139 K-ADIKV-KGEKPPEEVVKEILLSLEG  163 (168)
T ss_dssp             T-SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred             h-CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence            3 45555 7778999999998887753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.74  E-value=2.6e-16  Score=113.63  Aligned_cols=158  Identities=17%  Similarity=0.174  Sum_probs=94.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH-------HHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE-------VTVSLIQKEM   81 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~i~~~l   81 (196)
                      +.+|+|+|++||||||+++.|+..+|..+++.+++.....         . .....+....+.       .....+...+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   98 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------I-ATMQRGIPLTDEDRWPWLRSLAEWMDARA   98 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------H-HHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------H-HHHhcCCCCCCcccccHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999876632100         0 001111111111       1112222222


Q ss_pred             hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHH
Q 029287           82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINY  161 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (196)
                      .  .+..+|++........+..+... . .+..+|||++|++++.+|+.+|..  .....+.+..+...+...       
T Consensus        99 ~--~g~~viid~~~~~~~~~~~l~~~-~-~~~~vv~l~~~~e~l~~Rl~~R~~--~~~~~~~l~~~~~~~~~~-------  165 (200)
T 4eun_A           99 D--AGVSTIITCSALKRTYRDVLREG-P-PSVDFLHLDGPAEVIKGRMSKREG--HFMPASLLQSQLATLEAL-------  165 (200)
T ss_dssp             H--TTCCEEEEECCCCHHHHHHHTTS-S-SCCEEEEEECCHHHHHHHHTTCSC--CSSCGGGHHHHHHHCCCC-------
T ss_pred             h--cCCCEEEEchhhhHHHHHHHHHh-C-CceEEEEEeCCHHHHHHHHHhccc--CCCCHHHHHHHHHHhCCC-------
Confidence            2  23456777654444444433322 1 355779999999999999988842  222334444333322222       


Q ss_pred             HHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          162 YARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       162 ~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      | .....++||++++++++.++|.+.+..
T Consensus       166 ~-~~~~~~~Id~~~~~~e~~~~I~~~l~~  193 (200)
T 4eun_A          166 E-PDESGIVLDLRQPPEQLIERALTWLDI  193 (200)
T ss_dssp             C-TTSCEEEEETTSCHHHHHHHHHHHHCC
T ss_pred             C-CCCCeEEEECCCCHHHHHHHHHHHHHh
Confidence            1 122567899999999999999887754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.73  E-value=9.6e-17  Score=117.94  Aligned_cols=171  Identities=15%  Similarity=0.252  Sum_probs=96.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh----cCChh--hHHHHHHhh-----------------cC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA----SNSEY--GTTILNTIK-----------------EG   65 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~----~~~~~--~~~~~~~l~-----------------~~   65 (196)
                      +++|+|+|++||||||+++.|++.+|+.+++.|++++....    .+.+.  ...+.+...                 .+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            46899999999999999999999999999999999885421    22211  111222211                 11


Q ss_pred             CCCCHH----HH---------HHHHHHHHh-----cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHH
Q 029287           66 KIVPSE----VT---------VSLIQKEME-----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVN  127 (196)
Q Consensus        66 ~~~~~~----~~---------~~~i~~~l~-----~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~  127 (196)
                      ..+.+.    ..         ++.+...+.     .....++++|+.....        .+...++++|||++|++++.+
T Consensus        85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~--------~~~~~~d~~i~l~~~~e~~~~  156 (227)
T 1cke_A           85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT--------VVFPDAPVKIFLDASSEERAH  156 (227)
T ss_dssp             EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC--------CCCTTCSEEEEEECCHHHHHH
T ss_pred             eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc--------eEecCCCEEEEEeCCHHHHHH
Confidence            111111    00         122222221     1234678899874221        233478999999999999999


Q ss_pred             HHhhc--cCCCCCCcHHH----HHHHHH-HHHhchHhHHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhh
Q 029287          128 RVLNR--NEGRVDDNIDT----VRKRLQ-VFKALNLPVINYYARRGKLYTINAV-GTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       128 Rl~~r--~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~  192 (196)
                      |+..+  .+++.. +.+.    +.+|.. .|.....+.    ......++||++ ++++++.++|.+.+...+
T Consensus       157 R~~~~l~~rg~~~-~~~~~~~~i~~R~~~~~~~~~~pl----~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~~  224 (227)
T 1cke_A          157 RRMLQLQVKGFSV-NFERLLAEIKERDDRDRNRAVAPL----VPAADALVLDSTTLSIEQVIEKALQYARQKL  224 (227)
T ss_dssp             HHHHHHHHHTCCC-CHHHHHHHHC-------------C----CCCTTCEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccC-CHHHHHHHHHHHHHhhhhhcccCc----cCCCCEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence            95432  113321 2222    222111 111110111    111234688988 899999999998887654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.72  E-value=5.7e-17  Score=117.37  Aligned_cols=164  Identities=20%  Similarity=0.292  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCC-----CCCH----------H---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK-----IVPS----------E---   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~----------~---   71 (196)
                      ++|+|+|++||||||+++.|++ +|+.+++.|++++............+.+......     ....          .   
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            5899999999999999999999 8999999998877543333222222322221100     0110          0   


Q ss_pred             -----HHHHH----HHHHHhcCCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           72 -----VTVSL----IQKEMESSDS-KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        72 -----~~~~~----i~~~l~~~~~-~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                           ...+.    +...+..... ..+|+++.......       +...++.+|||++|++++.+|+.+|  +.   +.
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~-------~~~~~~~~i~l~~~~e~~~~Rl~~R--~~---~~  148 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG-------TYKNYDKLIVVYAPYEVCKERAIKR--GM---SE  148 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT-------CGGGSSEEEEECCCHHHHHHHHHHT--CC---CH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC-------chhhCCEEEEEECCHHHHHHHHHHc--CC---CH
Confidence                 11111    1112221222 56778864321111       1124789999999999999999987  32   33


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +.+.+++..   .. +... +..... ++|+++++++++.++|.+.+..+.
T Consensus       149 ~~~~~~~~~---~~-~~~~-~~~~ad-~vId~~~~~~~~~~~i~~~l~~~~  193 (204)
T 2if2_A          149 EDFERRWKK---QM-PIEE-KVKYAD-YVIDNSGSIEETYKQVKKVYEELT  193 (204)
T ss_dssp             HHHHHHHTT---SC-CHHH-HGGGCS-EECCCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHh---CC-ChhH-HHhcCC-EEEECCCCHHHHHHHHHHHHHHHh
Confidence            344443322   21 1112 222233 568888999999999998887654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.72  E-value=1.2e-16  Score=113.86  Aligned_cols=164  Identities=12%  Similarity=0.123  Sum_probs=90.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      +..|+|+|++||||||+++.|++.+|+.+++.|++..+....  +.    .+.... |...........+......  ..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~--~~----~~~~~~~g~~~~~~~~~~~~~~~~~~--~~   76 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA--DI----AWIFEMEGEAGFRRREREMIEALCKL--DN   76 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTS--CH----HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--Ch----hhHHHHhCHHHHHHHHHHHHHHHHhc--CC
Confidence            468889999999999999999999999999998887654221  11    111110 1111111222333333222  23


Q ss_pred             cEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH--hhccCCCCCCcHHHHHHHH-HHHHhchHhHHHHH
Q 029287           88 KFLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV--LNRNEGRVDDNIDTVRKRL-QVFKALNLPVINYY  162 (196)
Q Consensus        88 ~~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl--~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  162 (196)
                      .++..+  .......+..+..     .+.+|||++|++++.+|+  ..+. .|.........+++ ..|... .+....+
T Consensus        77 ~vi~~gg~~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~~-~rp~~~~~~~~~~l~~~~~~r-~~~y~~~  149 (185)
T 3trf_A           77 IILATGGGVVLDEKNRQQISE-----TGVVIYLTASIDTQLKRIGQKGEM-RRPLFIKNNSKEKLQQLNEIR-KPLYQAM  149 (185)
T ss_dssp             CEEECCTTGGGSHHHHHHHHH-----HEEEEEEECCHHHHHHHHHCCTTC-SSCCCCCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             cEEecCCceecCHHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCCC-CCCCCCCCCHHHHHHHHHHHH-HHHHhhc
Confidence            333333  3333344443332     247899999999999999  4332 33332222111211 122222 1222221


Q ss_pred             HhcCcEEEEeCCC-CHhHHHHHHHHHHHhh
Q 029287          163 ARRGKLYTINAVG-TVDEIFEQVRAVFAAL  191 (196)
Q Consensus       163 ~~~~~~~~I~~~~-~~~~v~~~i~~~i~~~  191 (196)
                          .-++||++. +++++.++|.+.+...
T Consensus       150 ----ad~~Idt~~~~~~e~~~~I~~~l~~~  175 (185)
T 3trf_A          150 ----ADLVYPTDDLNPRQLATQILVDIKQT  175 (185)
T ss_dssp             ----CSEEEECTTCCHHHHHHHHHHHSCC-
T ss_pred             ----CCEEEECCCCCHHHHHHHHHHHHHHH
Confidence                225677765 8999999988776543

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.71  E-value=8e-17  Score=113.15  Aligned_cols=155  Identities=17%  Similarity=0.239  Sum_probs=86.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      +-+|+|+|++||||||+++.|++.+|+.+++.|++.++...  ..    +.+.+.. |...........+.....  ...
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~l~~~~~--~~~   78 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--LS----VREIFEELGEDNFRMFEKNLIDELKT--LKT   78 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHTCHHHHHHHHHHHHHHHHT--CSS
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--CC----HHHHHHHhCHHHHHHHHHHHHHHHHh--cCC
Confidence            45899999999999999999999999999999988876532  11    2222221 211111111222333322  122


Q ss_pred             c-EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhchHhHHHHH
Q 029287           88 K-FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-EGRVDDN-IDTVRKRLQVFKALNLPVINYY  162 (196)
Q Consensus        88 ~-~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  162 (196)
                      . ++..+  ++.. ..       + ..++.+|||++|++++.+|+.+|. .+|.... .+.+.+   .|...    ...|
T Consensus        79 ~~Vi~~g~g~~~~-~~-------l-~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~---~~~~r----~~~~  142 (168)
T 1zuh_A           79 PHVISTGGGIVMH-EN-------L-KGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKE---LFEKR----QALY  142 (168)
T ss_dssp             CCEEECCGGGGGC-GG-------G-TTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHH---HHHHH----HHHH
T ss_pred             CEEEECCCCEech-hH-------H-hcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHH---HHHHH----HHHH
Confidence            2 33322  2212 11       2 357899999999999999998762 1222212 222222   22222    1122


Q ss_pred             HhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          163 ARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       163 ~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      ... ..++||++++++++.++|.+.+
T Consensus       143 ~~~-a~~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A          143 EKN-ASFIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             HHT-CSEEEEGGGCHHHHHHHHHHC-
T ss_pred             HHH-CCEEEECCCCHHHHHHHHHHHh
Confidence            221 3456888779999988876543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.70  E-value=5.3e-16  Score=112.37  Aligned_cols=163  Identities=17%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh----cCC--hhhHHHHHHhh-----------------cCCC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA----SNS--EYGTTILNTIK-----------------EGKI   67 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~----~~~--~~~~~~~~~l~-----------------~~~~   67 (196)
                      +|+|+|++||||||+++.|++.+|+.+++.|.+.+....    .+.  .....+.+.+.                 .|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            899999999999999999999999999999988765421    111  11111211111                 1111


Q ss_pred             CC----HH-------------HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHh
Q 029287           68 VP----SE-------------VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL  130 (196)
Q Consensus        68 ~~----~~-------------~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~  130 (196)
                      ++    ..             .+...+.+.+.... .++|+++....        ..+...++++|||++|++++.+|+.
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~--------~~~~~~~d~~i~l~a~~e~~~~R~~  154 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG--------TAVFPEAAHKFYLTASPEVRAWRRA  154 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC--------CCCCTTCSEEEEEECCHHHHHHHHH
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee--------EEEecCCcEEEEEECCHHHHHHHHH
Confidence            11    00             11111222211122 56778876422        0123457899999999999999998


Q ss_pred             hccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHH
Q 029287          131 NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVG-TVDEIFEQVRAVFA  189 (196)
Q Consensus       131 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~  189 (196)
                      +|..    .+.+.+.+++..-.....   ..+......++||+++ +++++.++|.+.+.
T Consensus       155 ~r~~----~~~~~~~~~~~~R~~~~~---~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          155 RERP----QAYEEVLRDLLRRDERDK---AQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             HTSS----SCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             hhcc----cCHHHHHHHHHHHHHHHh---hcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            8731    233333332221111110   0001223457899886 99999999887664

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.70  E-value=1.5e-16  Score=119.49  Aligned_cols=161  Identities=14%  Similarity=0.183  Sum_probs=98.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH---hCCcee--chhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN---YGLTHL--SAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME   82 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~---~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~   82 (196)
                      .|++|+|+|+|||||||+++.|++.   +|+.++  +.|.+. .......+.+...          ........+...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~-~~l~~~~~~~e~~----------~~~~~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR-ESFPVWKEKYEEF----------IKKSTYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH-TTSSSCCGGGHHH----------HHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH-HHHhhhhHHHHHH----------HHHHHHHHHHHHhh
Confidence            4679999999999999999999998   687777  665443 2211111111110          00111233344443


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHH
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVIN  160 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (196)
                        . ..+|+|+.......+..+...  -...|+.+|||++|++++.+|+.+|.  +. ...+.+++....|.....    
T Consensus        72 --~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~--~~-~~~~~l~~~~~~~e~~~~----  141 (260)
T 3a4m_A           72 --N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG--EK-IPNEVIKKMYEKFDEPGK----  141 (260)
T ss_dssp             --T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT--CS-SCHHHHHHHHHHCCCTTS----
T ss_pred             --C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC--CC-CCHHHHHHHHHHhcCccc----
Confidence              2 678899877665555444432  23467899999999999999999873  22 234555554444443211    


Q ss_pred             HHHhcCcEEEEeCCC--CHhHHHHHHHHHHH
Q 029287          161 YYARRGKLYTINAVG--TVDEIFEQVRAVFA  189 (196)
Q Consensus       161 ~~~~~~~~~~I~~~~--~~~~v~~~i~~~i~  189 (196)
                      .|.-....++||++.  +++++.+.|.+.+.
T Consensus       142 ~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~  172 (260)
T 3a4m_A          142 KYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK  172 (260)
T ss_dssp             SCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred             cCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence            111123567899876  78888888876654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.70  E-value=2.5e-16  Score=112.19  Aligned_cols=156  Identities=17%  Similarity=0.246  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      ++|+|+|++||||||+++.|++.+|+.+++.|++.+.....  +    +.+.+. .|...........+...+..  ...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~   74 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR--S----IADIFATDGEQEFRRIEEDVVRAALAD--HDG   74 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSS--C----HHHHHHHHCHHHHHHHHHHHHHHHHHH--CCS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCC--C----HHHHHHHhChHHHHHHHHHHHHHHHhc--CCe
Confidence            57899999999999999999999999999999887765321  1    111111 11111111112223333222  222


Q ss_pred             EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCC----CcHHHHHHHHHHHHhchHhHHHHH
Q 029287           89 FLIDG--FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD----DNIDTVRKRLQVFKALNLPVINYY  162 (196)
Q Consensus        89 ~iid~--~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  162 (196)
                      ++..+  +......+..    +.  .+.+|||++|++++.+|+.+|. ++..    +..+.+..   .|... .   ..|
T Consensus        75 vi~~g~~~v~~~~~~~~----l~--~~~vV~L~~~~e~~~~Rl~~r~-~r~~~~~~~~~~~i~~---~~~~r-~---~~~  140 (184)
T 2iyv_A           75 VLSLGGGAVTSPGVRAA----LA--GHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRA---LMAKR-A---PLY  140 (184)
T ss_dssp             EEECCTTGGGSHHHHHH----HT--TSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHH---HHHHH-H---HHH
T ss_pred             EEecCCcEEcCHHHHHH----Hc--CCeEEEEeCCHHHHHHHHhCCC-CCCCccCCCHHHHHHH---HHHHH-H---HHH
Confidence            33323  1112222222    21  5678999999999999998873 2221    11222222   12211 1   122


Q ss_pred             HhcCcEEEEeCC-CCHhHHHHHHHHHH
Q 029287          163 ARRGKLYTINAV-GTVDEIFEQVRAVF  188 (196)
Q Consensus       163 ~~~~~~~~I~~~-~~~~~v~~~i~~~i  188 (196)
                      ... ..++||++ .+++++.++|.+.+
T Consensus       141 ~~~-~~~~Idt~~~s~ee~~~~I~~~l  166 (184)
T 2iyv_A          141 RRV-ATMRVDTNRRNPGAVVRHILSRL  166 (184)
T ss_dssp             HHH-CSEEEECSSSCHHHHHHHHHTTS
T ss_pred             hcc-CCEEEECCCCCHHHHHHHHHHHH
Confidence            222 23678887 79999998887655

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.70  E-value=6.5e-17  Score=117.39  Aligned_cols=168  Identities=18%  Similarity=0.166  Sum_probs=100.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhc-C--CCCCHHHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKE-G--KIVPSEVTVSLIQKEME   82 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~i~~~l~   82 (196)
                      +.+.+|+|+|++||||||+++.|++.+ ++.+++.|++++..-..  ..+   ...... .  ..+........+...+.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~i~~~l~   93 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETD---KNGFLQYDVLEALNMEKMMSAISCWME   93 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBC---TTSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hcc---ccCCChhHHHHHhHHHHHHHHHHHHHh
Confidence            456899999999999999999999988 88889988765421000  000   000000 0  00111222222222222


Q ss_pred             c-------------CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc-HHHHH-HH
Q 029287           83 S-------------SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN-IDTVR-KR  147 (196)
Q Consensus        83 ~-------------~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~-~~~~~-~~  147 (196)
                      .             .....+|+++++....      ..+...||.++|+++|++++.+|+..|.  +..+. ...+. +.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~------~~~~~~~d~~i~l~~~~~~~~~R~~~R~--~~~e~~~~~~~~~~  165 (207)
T 2qt1_A           94 SARHSVVSTDQESAEEIPILIIEGFLLFNY------KPLDTIWNRSYFLTIPYEECKRRRSTRV--YQPPDSPGYFDGHV  165 (207)
T ss_dssp             HHTTSSCCC-----CCCCEEEEECTTCTTC------GGGTTTCSEEEEEECCHHHHHHHHHHSC--CSSCCCTTHHHHTH
T ss_pred             CCCCCCcCCCeeecCCCCEEEEeehHHcCc------HHHHHhcCeeEEEECCHHHHHHHHHHcC--CCccchHHHHHHHH
Confidence            1             1245788998653311      1233478999999999999999998773  22221 22232 23


Q ss_pred             HHHHHhchHhHHHHHHhc-CcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          148 LQVFKALNLPVINYYARR-GKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~-~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ...|...    .+.+... ..++.||++++++++.++|.+.+..+
T Consensus       166 ~~~~~~~----~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~~  206 (207)
T 2qt1_A          166 WPMYLKY----RQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQE  206 (207)
T ss_dssp             HHHHHHH----HHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTTT
T ss_pred             hHHHHHH----HHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHhh
Confidence            3344332    3333333 56778999999999999998887654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.69  E-value=2.5e-15  Score=106.75  Aligned_cols=159  Identities=13%  Similarity=0.125  Sum_probs=87.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCcee-chhHHHHHHHhcCChhhHHHHHHhhcCCCC----CH--HHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHL-SAGELLRREIASNSEYGTTILNTIKEGKIV----PS--EVTVSLIQKE   80 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~--~~~~~~i~~~   80 (196)
                      +|++|+|+|++||||||+++.|++.+|..++ +.+.           .+..+++.+..+...    ..  ....+.+...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----------~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~   72 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----------MGQALRKLTPGFSGDPQEHPMWIPLMLDALQYA   72 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----------HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----------hHHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence            4678999999999999999999999998887 4311           112222222211110    00  2233444444


Q ss_pred             HhcCCCCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHh
Q 029287           81 MESSDSKKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLP  157 (196)
Q Consensus        81 l~~~~~~~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~  157 (196)
                      +.. .+..+|+|+.......+..+...   .+..+ ..|||++|++++.+|+.+|. .+. ...+.++.....+...   
T Consensus        73 l~~-~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~-~r~-~~~~~~~~~~~~~~~~---  145 (183)
T 2vli_A           73 SRE-AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDG-QPQ-VNVGTVEDRLNELRGE---  145 (183)
T ss_dssp             HHH-CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC------CCHHHHHHHHHHHTSG---
T ss_pred             HHh-CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhcc-ccc-hhHHHHHHHHHhhccc---
Confidence            443 24556778655554333222222   22223 45999999999999999873 222 2233333322222211   


Q ss_pred             HHHHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhhh
Q 029287          158 VINYYARRGKLYTINAV-GTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       158 ~~~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~~  192 (196)
                        . +    .. +||++ .+++++.++|.+.+...+
T Consensus       146 --~-~----~~-~Id~~~~~~~~~~~~I~~~l~~~~  173 (183)
T 2vli_A          146 --Q-F----QT-HIDTAGLGTQQVAEQIAAQVGLTL  173 (183)
T ss_dssp             --G-G----CS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred             --c-c----ce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence              1 1    23 78887 899999999998886654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.69  E-value=2.2e-16  Score=111.64  Aligned_cols=158  Identities=15%  Similarity=0.213  Sum_probs=90.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIK-EGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      +++|+|.|++||||||+++.|++.+|+.+++.|++++.....  +    +.+.+. .+...........+. .+.  ...
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~-~l~--~~~   74 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQ--K----VSEIFEQKRENFFREQEQKMAD-FFS--SCE   74 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTS--C----HHHHHHHHCHHHHHHHHHHHHH-HHT--TCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCC--C----HHHHHHHcCHHHHHHHHHHHHH-HHH--ccC
Confidence            357899999999999999999999999999999887654211  1    111111 111111111112222 222  223


Q ss_pred             cEEEe-CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhchHhHHHHHHh
Q 029287           88 KFLID-GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-EGRVDDN-IDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        88 ~~iid-~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      .+|++ +...... ..     + ...+.+|||++|++++.+|+.+|. .+|.... .+.+.+   .|...    ...|..
T Consensus        75 ~~vi~~g~~~~~~-~~-----l-~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~---~~~~r----~~~y~~  140 (175)
T 1via_A           75 KACIATGGGFVNV-SN-----L-EKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKK---LYNER----LSKYEQ  140 (175)
T ss_dssp             SEEEECCTTGGGS-TT-----G-GGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHH---HHHHH----HHHHHH
T ss_pred             CEEEECCCCEehh-hH-----H-hcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHH---HHHHH----HHHHHh
Confidence            34454 3221111 10     1 135789999999999999998773 2343332 333332   23322    122222


Q ss_pred             cCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287          165 RGKLYTINAV-GTVDEIFEQVRAVFAA  190 (196)
Q Consensus       165 ~~~~~~I~~~-~~~~~v~~~i~~~i~~  190 (196)
                      . ..+.||++ .+++++.+.|.+.+..
T Consensus       141 ~-~~~~Idt~~~~~eev~~~I~~~l~~  166 (175)
T 1via_A          141 K-ANFILNIENKNIDELLSEIKKVIKE  166 (175)
T ss_dssp             H-CSEEEECTTCCHHHHHHHHHHHHC-
T ss_pred             c-CCEEEECCCCCHHHHHHHHHHHHHh
Confidence            1 34678887 7999999998877643

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.68  E-value=3.2e-15  Score=106.56  Aligned_cols=162  Identities=16%  Similarity=0.285  Sum_probs=92.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH-hCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCC---CHHHHHHHHHHHHhc
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN-YGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV---PSEVTVSLIQKEMES   83 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~i~~~l~~   83 (196)
                      .+++|+|+|++||||||+++.|++. +|+.+++.|+++++. ......+..+    . ....   .+......+...+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~~----~-~~~~~r~~~~~~~~~l~~~~~~   82 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTEL----D-THIIEEKDEDRLLDFMEPIMVS   82 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC-----------CCCCCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHHh----h-hcccCCCCHHHHHHHHHHHHhc
Confidence            4578999999999999999999999 799999999988764 1111111111    0 0111   122233444444432


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHH--HHHHhchHhHHHH
Q 029287           84 SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRL--QVFKALNLPVINY  161 (196)
Q Consensus        84 ~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  161 (196)
                        ..+++++.....     .+..   ..++.+|||++|++++.+|+.+|.  .   +...+..+.  +.+..........
T Consensus        83 --~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R~--~---~~~~~~~~~~~q~~~~l~~~~~~~  147 (184)
T 1y63_A           83 --RGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKRQ--Y---SEAKRAENMEAEIQCICEEEARDA  147 (184)
T ss_dssp             --SSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHTT--C---CHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             --cCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhCC--C---ChhhhHhhHHHHHHHHHHHHHHHH
Confidence              345667754211     1110   136789999999999999999882  1   122222221  1122222222333


Q ss_pred             HHhcCcEEEEe-CCCCHhHHHHHHHHHHHhhhh
Q 029287          162 YARRGKLYTIN-AVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       162 ~~~~~~~~~I~-~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      |+.  . ++|+ ++++++++.+++.+++..+..
T Consensus       148 y~~--~-~vi~~n~~~~~~~~~~v~~i~~~l~~  177 (184)
T 1y63_A          148 YED--D-IVLVRENDTLEQMAATVEEIRERVEV  177 (184)
T ss_dssp             SCG--G-GEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             hcc--C-cEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            331  2 2344 467899997777776665543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.68  E-value=4.1e-17  Score=122.75  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=54.6

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCC---CCcHHHHHHHHHHHHhc-----hHhHHHHHHhcCcEEEEeCCCCHhHHH
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRV---DDNIDTVRKRLQVFKAL-----NLPVINYYARRGKLYTINAVGTVDEIF  181 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~I~~~~~~~~v~  181 (196)
                      ..||++||||+|++++.+|+.+|  +|.   ....+.++.....|..+     ..+....++. .++++||++++++++.
T Consensus       173 ~~pd~vi~L~~~~e~~~~Ri~~R--~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~  249 (263)
T 1p5z_B          173 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKY  249 (263)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHH
T ss_pred             CCCCeEEEEECCHHHHHHHHHhc--CCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHH
Confidence            47999999999999999999887  332   12334444333334332     1112222233 5688999999999999


Q ss_pred             HHHHHHHHhhhh
Q 029287          182 EQVRAVFAALKL  193 (196)
Q Consensus       182 ~~i~~~i~~~~~  193 (196)
                      ++|.+.+...+.
T Consensus       250 ~~I~~~l~~~l~  261 (263)
T 1p5z_B          250 ESLVEKVKEFLS  261 (263)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999998877653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.67  E-value=7.6e-16  Score=111.15  Aligned_cols=165  Identities=22%  Similarity=0.268  Sum_probs=95.9

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHh----hcCCCCCHHH---------
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTI----KEGKIVPSEV---------   72 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~---------   72 (196)
                      +..+++|+|+|++||||||+++.|++. |+.+++.|++++... .+.+  ..+.+..    ..+ .+....         
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g-~i~~~~l~~~~~~~~   79 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGG-RLDRRALARLVFSDP   79 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETT-EECHHHHHHHHTTSH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCC-CcCHHHHHHHHhCCH
Confidence            345789999999999999999999998 999999998877654 2111  1222111    111 111110         


Q ss_pred             ---------HHHHHH-HHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC
Q 029287           73 ---------TVSLIQ-KEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD  139 (196)
Q Consensus        73 ---------~~~~i~-~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~  139 (196)
                               .++.+. ..+.   ..+...+|+++-.....       .+...+|.+|||++|++++.+|+.+|.    ..
T Consensus        80 ~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l~~~-------~~~~~~d~~i~l~~~~e~~~~R~~~R~----~~  148 (203)
T 1uf9_A           80 ERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEK-------GWEGRLHGTLLVAAPLEERVRRVMARS----GL  148 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTT-------TCGGGSSEEEEECCCHHHHHHHHHTTT----CC
T ss_pred             HHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEecceecc-------CchhhCCEEEEEECCHHHHHHHHHHcC----CC
Confidence                     111111 1111   22245677775321110       111247899999999999999999873    11


Q ss_pred             cHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          140 NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +.+.+.+++..   . .+..... .... ++|+++++++++.++|.+.+..++
T Consensus       149 ~~~~~~~~i~~---~-~~~~~~~-~~ad-~vId~~~~~~~~~~~i~~~~~~~~  195 (203)
T 1uf9_A          149 SREEVLARERA---Q-MPEEEKR-KRAT-WVLENTGSLEDLERALKAVLAELT  195 (203)
T ss_dssp             TTHHHHHHHTT---S-CCHHHHH-HHCS-EEECCSSHHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHH---C-CChhHHH-HhCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence            22233333221   1 1111111 2223 478888899999999998887654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.66  E-value=4.1e-15  Score=105.52  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSK   87 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~   87 (196)
                      .+.+|+|+|++||||||+++.|++.+|+.+++.++++++.. .....+..     ..............+...+..   .
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---g   80 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-LYDGYDEE-----YDCPILDEDRVVDELDNQMRE---G   80 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-CEEEEETT-----TTEEEECHHHHHHHHHHHHHH---C
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-hhhhhhhh-----hcCccCChHHHHHHHHHHHhc---C
Confidence            34678899999999999999999999999999998877641 10000000     000111233344444444443   2


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhc
Q 029287           88 KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r  132 (196)
                      +++++......-     .   ...++.+|||++|++++.+|+.+|
T Consensus        81 ~~vv~~~~~~~~-----~---~~~~~~vi~L~~~~e~l~~R~~~r  117 (180)
T 3iij_A           81 GVIVDYHGCDFF-----P---ERWFHIVFVLRTDTNVLYERLETR  117 (180)
T ss_dssp             CEEEECSCCTTS-----C---GGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             CEEEEechhhhc-----c---hhcCCEEEEEECCHHHHHHHHHHc
Confidence            455664321100     0   012789999999999999999988

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.65  E-value=1.9e-15  Score=108.34  Aligned_cols=150  Identities=14%  Similarity=0.173  Sum_probs=90.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc----CCCCC---------------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE----GKIVP---------------   69 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---------------   69 (196)
                      .++|+|+|++||||||+++.|++.+|+.+++.|+++++...+   ....+.+....    ...++               
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~   88 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENL   88 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHH
Confidence            479999999999999999999999999999999998776544   11112111110    00010               


Q ss_pred             ---HHHHHHHHHHH----HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           70 ---SEVTVSLIQKE----MESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        70 ---~~~~~~~i~~~----l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                         ....++.+...    +... ...+++|. |...+.      .+....|.+||+++|++++.+|+..+          
T Consensus        89 ~~l~~i~hP~i~~~~~~~~~~~-~~~vv~d~-pll~e~------~~~~~~d~vi~v~a~~e~r~~Rli~~----------  150 (192)
T 2grj_A           89 KKLELLVHPLMKKRVQEIINKT-SGLIVIEA-ALLKRM------GLDQLCDHVITVVASRETILKRNREA----------  150 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC-CEEEEEEC-TTTTTT------TGGGGCSEEEEEECCHHHHHHHCSSH----------
T ss_pred             HHHHhhhCHHHHHHHHHHHHHc-CCEEEEEE-eceeec------ChHHhCCEEEEEECCHHHHHHHHHHh----------
Confidence               01223333322    2221 34556764 422111      11224689999999999999998221          


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                          +...|...       ....+. ++|+++++++++.+++.+.+.++
T Consensus       151 ----q~~~~~~~-------~~~~AD-~vI~n~~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          151 ----DRRLKFQE-------DIVPQG-IVVANNSTLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             ----HHHHTTCT-------TCCCCS-EEEECSSCHHHHHHHHHHHHHHH
T ss_pred             ----cCCchhhh-------HHhcCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence                11111011       011222 46888899999999998888766

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.65  E-value=6.5e-16  Score=118.20  Aligned_cols=165  Identities=20%  Similarity=0.237  Sum_probs=97.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES-SDS   86 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~-~~~   86 (196)
                      |++|+|.|+|||||||+++.|++.+ |+.+++.|. ++.......+ +.. ..+...+...........+...+.. ..+
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~-~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccH-HHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            4789999999999999999999985 899999984 4444332111 000 0000000000011222334444421 345


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhH-HHHHH
Q 029287           87 KKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPV-INYYA  163 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  163 (196)
                      ..+|+|+++.+..++..+....  ...+..+|||++|++++.+|+.+|..  .....+.++++...|....... .. +.
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~--~~~~~e~i~~~~~~~~~~~~~~~~~-~~  155 (301)
T 1ltq_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVLRSMYKSMREYLGLPVYN-GT  155 (301)
T ss_dssp             CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG--GCCCHHHHHHHHHHHHHHHTCCCCC-CC
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC--CCCCHHHHHHHHHHHhcccCCccee-cc
Confidence            7889999988866665554322  22455789999999999999999842  2346777888777776653211 00 11


Q ss_pred             h-cCcEEEEeCCCCHhH
Q 029287          164 R-RGKLYTINAVGTVDE  179 (196)
Q Consensus       164 ~-~~~~~~I~~~~~~~~  179 (196)
                      . ....+.+|.++++++
T Consensus       156 ~~~~~~i~iD~dgtl~~  172 (301)
T 1ltq_A          156 PGKPKAVIFDVDGTLAK  172 (301)
T ss_dssp             TTSCEEEEEETBTTTBC
T ss_pred             ccccceEEEeCCCCccc
Confidence            1 124556777666544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.65  E-value=1.1e-15  Score=112.75  Aligned_cols=79  Identities=10%  Similarity=0.198  Sum_probs=40.7

Q ss_pred             hCCCCcEEEEeecChHHHHHHHhhccCCCCCC---cHHHHHHHHHHHHhchHhHHHHH--HhcCcEEEEeCCCCHhHHHH
Q 029287          108 MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD---NIDTVRKRLQVFKALNLPVINYY--ARRGKLYTINAVGTVDEIFE  182 (196)
Q Consensus       108 ~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~I~~~~~~~~v~~  182 (196)
                      ....||++||||+|++++.+|+.+|  +|..+   +.+..+.....|....    ..|  ..+..+++||++++++++.+
T Consensus       143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R--~r~~e~~~~~~~~~rv~~~~~~~~----~~~~~~~~~~~~vId~~~~~eev~~  216 (230)
T 2vp4_A          143 IHVQADLIIYLRTSPEVAYERIRQR--ARSEESCVPLKYLQELHELHEDWL----IHQRRPQSCKVLVLDADLNLENIGT  216 (230)
T ss_dssp             BCCCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHH----TSCCSSCCCEEEEEECCC-------
T ss_pred             hcCCCCEEEEEeCCHHHHHHHHHHc--CCcccccCcHHHHHHHHHHHHHHH----HHhcccCCCCEEEEECCCCHHHHHH
Confidence            3568999999999999999999887  44322   2233333334444431    111  23457899999999999999


Q ss_pred             HHHHHHHhhh
Q 029287          183 QVRAVFAALK  192 (196)
Q Consensus       183 ~i~~~i~~~~  192 (196)
                      +|.+.+..++
T Consensus       217 ~I~~~l~~~~  226 (230)
T 2vp4_A          217 EYQRSESSIF  226 (230)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHh
Confidence            9988887654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.65  E-value=3.2e-16  Score=117.11  Aligned_cols=172  Identities=17%  Similarity=0.260  Sum_probs=94.9

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCc----------eechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLT----------HLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS   70 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~   70 (196)
                      ..+|++|+|+|++||||||+++.|++.+|+.          +++.|++++..    .. +..-+......     .....
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~----~~-~~~~~~~~g~~~f~~~~~~d~   93 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL----TS-EQKAKALKGQFNFDHPDAFDN   93 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC----CH-HHHHHHHTTCSCTTSGGGBCH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc----Ch-hhhhhhccCCCCCCCcchhhH
Confidence            3467899999999999999999999999987          68888876421    00 00001111110     00111


Q ss_pred             HHHHHHHHHHHh----------------------cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHH
Q 029287           71 EVTVSLIQKEME----------------------SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR  128 (196)
Q Consensus        71 ~~~~~~i~~~l~----------------------~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~R  128 (196)
                      ....+.+.....                      ......+|+++.......  .+..    .+|.+|||++|++++.+|
T Consensus        94 ~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~----~~d~vi~l~~~~e~~~~R  167 (252)
T 1uj2_A           94 ELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD----LFQMKLFVDTDADTRLSR  167 (252)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH----HCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH----hcCeeEEEeCCHHHHHHH
Confidence            122233333321                      113457889986542111  1111    368999999999999999


Q ss_pred             HhhccC-CCCCCcHHHHHHHHHHHHhchHhHHH----HHHhcCcEEE---EeCCCCHhHHHHHHHHHHHhhh
Q 029287          129 VLNRNE-GRVDDNIDTVRKRLQVFKALNLPVIN----YYARRGKLYT---INAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       129 l~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +..|.. .+ ..+.+.+.+++.   ....+...    .+.....+++   ||++++++++.++|.+.+...+
T Consensus       168 ~~~R~~~~r-g~~~e~i~~~~~---~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~  235 (252)
T 1uj2_A          168 RVLRDISER-GRDLEQILSQYI---TFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGP  235 (252)
T ss_dssp             HHHHHHHHS-CCCHHHHHHHHH---HTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhhh-CCCHHHHHHHHH---HhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccch
Confidence            988731 11 123444333322   22111111    1122233332   3788889999999888776543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.62  E-value=1.5e-15  Score=107.01  Aligned_cols=159  Identities=14%  Similarity=0.233  Sum_probs=82.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      +++|+|+|++||||||+++.|++.++..+++.+.++++...  ......+.. .  |...........+. .+..  ...
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~-~--g~~~~~~~~~~~l~-~l~~--~~~   75 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL-E--GEEGFRDREEKVIN-ELTE--KQG   75 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH-H--HHHHHHHHHHHHHH-HHHT--SSS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH-H--hHHHHHHHHHHHHH-HHHh--CCC
Confidence            46899999999999999999999999999998887765321  111111110 0  00000000111222 2222  233


Q ss_pred             EEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC----CCc-HHHHHHHHHHHHhchHhHHH
Q 029287           89 FLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV----DDN-IDTVRKRLQVFKALNLPVIN  160 (196)
Q Consensus        89 ~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~  160 (196)
                      +++.   +.+.....+..+.     ..++++|+++|++++.+|+.+|. .|.    .+. .+.++.+.....    +   
T Consensus        76 ~v~~~~~~~~~~~~~~~~l~-----~~~~~i~l~~~~~~l~~R~~~r~-~r~~~~~~~~~~~~~~~~~~~r~----~---  142 (173)
T 1kag_A           76 IVLATGGGSVKSRETRNRLS-----ARGVVVYLETTIEKQLARTQRDK-KRPLLHVETPPREVLEALANERN----P---  142 (173)
T ss_dssp             EEEECCTTGGGSHHHHHHHH-----HHSEEEECCCCHHHHHSCC-------CCSSSSCCCHHHHHHHHHHHH----H---
T ss_pred             eEEECCCeEEecHHHHHHHH-----hCCEEEEEeCCHHHHHHHHhCCC-CCCCCCCCCchHHHHHHHHHHHH----H---
Confidence            4443   2222333333332     24678999999999999998863 121    122 444443322111    1   


Q ss_pred             HHHhcCcEEEEeCC-CCHhHHHHHHHHHHH
Q 029287          161 YYARRGKLYTINAV-GTVDEIFEQVRAVFA  189 (196)
Q Consensus       161 ~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~  189 (196)
                      .|.... .++||++ .+++++.++|...+.
T Consensus       143 ~~~~~a-~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A          143 LYEEIA-DVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred             HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence            122222 3567776 799999998877653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.62  E-value=1.1e-14  Score=107.71  Aligned_cols=172  Identities=15%  Similarity=0.281  Sum_probs=96.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH----hcCCh--hhHHHHHHh------------------
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI----ASNSE--YGTTILNTI------------------   62 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~----~~~~~--~~~~~~~~l------------------   62 (196)
                      ..+++|+|+|++||||||+++.|++.+|+.+++.|++++...    ..+.+  ....+.+.+                  
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~   93 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF   93 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence            456799999999999999999999999999999999987632    12222  111111111                  


Q ss_pred             hcCCC----CCHHHHH---------HHHHHHH----h-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           63 KEGKI----VPSEVTV---------SLIQKEM----E-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        63 ~~~~~----~~~~~~~---------~~i~~~l----~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ..|..    +....+.         +.+...+    . ...+.++|+++.....        .+...++++|||++|+++
T Consensus        94 ~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~--------~~l~~~d~vi~L~a~~e~  165 (236)
T 1q3t_A           94 VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT--------VVLPQAELKIFLVASVDE  165 (236)
T ss_dssp             ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS--------SSGGGCSEEEEEECCHHH
T ss_pred             ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh--------hhccCCCEEEEEECCHHH
Confidence            12221    1111111         1111111    1 1124567888875421        011256899999999999


Q ss_pred             HHHHHh----hccCCCCCCcHHHHHHHHHH--HHhchHhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHHh
Q 029287          125 MVNRVL----NRNEGRVDDNIDTVRKRLQV--FKALNLPVINYYARRGKLYTINAVG-TVDEIFEQVRAVFAA  190 (196)
Q Consensus       125 ~~~Rl~----~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~~  190 (196)
                      +.+|+.    +|  ++ ..+.+.+.+++..  +..........+ .....++||+++ +++++.++|.+.+..
T Consensus       166 ~~~R~~~~~~~R--~~-~~~~e~~~~~i~~R~~~~~~~~~~p~~-~~~d~~vId~~~~s~eev~~~I~~~l~~  234 (236)
T 1q3t_A          166 RAERRYKENIAK--GI-ETDLETLKKEIAARDYKDSHRETSPLK-QAEDAVYLDTTGLNIQEVVEKIKAEAEK  234 (236)
T ss_dssp             HHHHHHHHHHHT--TC-CCCHHHHHHHHHHHHHHHTTCSSSCCS-CCTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CC-CCCHHHHHHHHHHHhhhhhhccccccc-ccCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            999983    34  22 2233333332221  111100000011 112346788884 999999999887754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.62  E-value=6.1e-15  Score=109.76  Aligned_cols=169  Identities=17%  Similarity=0.178  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      .+|+|+|++||||||+++.|++.+|+.+++.+.+++.... +..    +.+.... |...+.......+.+.... ....
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~----i~~i~~~~ge~~fr~~e~~~l~~l~~~-~~~~  122 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTS----VAEIFEHFGESVFREKETEALKKLSLM-YHQV  122 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH-CSSE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Ccc----HHHHHHHhCcHHHHHHHHHHHHHHHhh-cCCc
Confidence            5788999999999999999999999999999988876531 111    2222211 2111112222233333322 1233


Q ss_pred             EEEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-CCCCCC-------cHHHHHHHH-HHHHhchHh
Q 029287           89 FLID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-EGRVDD-------NIDTVRKRL-QVFKALNLP  157 (196)
Q Consensus        89 ~iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-~~~~~~-------~~~~~~~~~-~~~~~~~~~  157 (196)
                      +|..  |.+.....+..+    .  .+++|||++|++++.+|+.++. ..|.-.       ..+...+++ ..|...   
T Consensus       123 Via~GgG~v~~~~~~~~l----~--~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR---  193 (250)
T 3nwj_A          123 VVSTGGGAVIRPINWKYM----H--KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDAR---  193 (250)
T ss_dssp             EEECCGGGGGSHHHHHHH----T--TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHH---
T ss_pred             EEecCCCeecCHHHHHHH----h--CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHH---
Confidence            4433  343333443333    1  3789999999999999998631 122211       111111222 223332   


Q ss_pred             HHHHHHhcCcEEEE----------e-CCCCHhHHHHHHHHHHHhhhhh
Q 029287          158 VINYYARRGKLYTI----------N-AVGTVDEIFEQVRAVFAALKLV  194 (196)
Q Consensus       158 ~~~~~~~~~~~~~I----------~-~~~~~~~v~~~i~~~i~~~~~~  194 (196)
                       ...|.....++.+          | .+.+++++.+.|.+.+..+++.
T Consensus       194 -~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~  240 (250)
T 3nwj_A          194 -GEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEK  240 (250)
T ss_dssp             -HHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence             2223332223222          4 3578999999999888776643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.62  E-value=4.1e-14  Score=105.65  Aligned_cols=174  Identities=16%  Similarity=0.235  Sum_probs=92.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH----hcCC-----hhhHHHHHHhhc--------------C
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI----ASNS-----EYGTTILNTIKE--------------G   65 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~----~~~~-----~~~~~~~~~l~~--------------~   65 (196)
                      ..+|+|+|++||||||+++.|++.+|+.+++.|.+++...    ..+.     .....+...+..              +
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  106 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILEG  106 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEECC
Confidence            3689999999999999999999999999999999985432    1111     111112211000              0


Q ss_pred             CCCCH----H-------------HHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHH
Q 029287           66 KIVPS----E-------------VTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVN  127 (196)
Q Consensus        66 ~~~~~----~-------------~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~  127 (196)
                      ..+.+    .             .+...+..... .....++|+++-..+.        .+.+..++.|||++|++++.+
T Consensus       107 ~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~--------~v~~~~~~~ifl~A~~e~r~~  178 (252)
T 4e22_A          107 EDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGT--------IVFPDAPVKIFLDASSQERAH  178 (252)
T ss_dssp             EECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCC--------CCSTTCSEEEEEECCHHHHHH
T ss_pred             eehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceece--------eecCCCCEEEEEECCHHHHHH
Confidence            00100    0             11111112111 2234566777532110        012356899999999999999


Q ss_pred             HHhhccC-CCCCCcHHHHHHHHHHHHhchHhHHHHHHh---cCcEEEEeCCC-CHhHHHHHHHHHHHhhh
Q 029287          128 RVLNRNE-GRVDDNIDTVRKRLQVFKALNLPVINYYAR---RGKLYTINAVG-TVDEIFEQVRAVFAALK  192 (196)
Q Consensus       128 Rl~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~I~~~~-~~~~v~~~i~~~i~~~~  192 (196)
                      |+.+... .+...+.+.+.+++..-.....  ....++   ....++||+++ +++++.+.|.+.+....
T Consensus       179 R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~--~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~  246 (252)
T 4e22_A          179 RRMLQLQERGFNVNFERLLAEIQERDNRDR--NRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRIL  246 (252)
T ss_dssp             HHHHHHHHHTCCCCHHHHHHHHC--------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHhh--hccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHHh
Confidence            9875210 0122233333332211111000  011122   12346788765 89999999988886653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.58  E-value=4e-14  Score=100.90  Aligned_cols=160  Identities=14%  Similarity=0.187  Sum_probs=88.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH------
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS------   75 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------   75 (196)
                      ..+++|+|+|++||||||+++.|++.++     +.+++.+.+ +..+...              ..........      
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~--------------~~~~~~~r~~~~~~~~   75 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEG--------------AGFTREERLRHLKRIA   75 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTT--------------CCCCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhc--------------cCCChhhHHHHHHHHH
Confidence            3457899999999999999999999874     234554433 3221110              1111111111      


Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287           76 LIQKEMESSDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA  153 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~  153 (196)
                      .+...+. ..+..+++|++......+..+....  ...|+.+||||+|++++.+|+.++.          +.........
T Consensus        76 ~~~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~----------~~~~~~~~~~  144 (186)
T 2yvu_A           76 WIARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGL----------YKKALKGELE  144 (186)
T ss_dssp             HHHHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHH----------HHHHHTTCCS
T ss_pred             HHHHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhh----------hhHHhhcchh
Confidence            1111111 2345567788765544443333322  2258999999999999999975320          0000000000


Q ss_pred             chHhHHHHHHh-cCcEEEEeCC-CCHhHHHHHHHHHHHhhh
Q 029287          154 LNLPVINYYAR-RGKLYTINAV-GTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       154 ~~~~~~~~~~~-~~~~~~I~~~-~~~~~v~~~i~~~i~~~~  192 (196)
                      ........|.+ ....++||++ .+++++.++|.+.+...+
T Consensus       145 ~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~~  185 (186)
T 2yvu_A          145 NFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKAVI  185 (186)
T ss_dssp             SCHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            00001111221 1245789987 799999999988887654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.58  E-value=1.2e-14  Score=105.83  Aligned_cols=161  Identities=12%  Similarity=0.140  Sum_probs=87.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhC------CceechhHHHHHHHhcCChhh-HHHHHHhhcCCCCCHHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYG------LTHLSAGELLRREIASNSEYG-TTILNTIKEGKIVPSEVTVSLIQKE   80 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~------~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~   80 (196)
                      .+++|+|+|++||||||+++.|++.++      ..+++.+.+ +..+....... ..-...+        ......+...
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~~~~~~~~   94 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRIAEVAKLF   94 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHHHHHHHHH
Confidence            457899999999999999999999876      666665333 22211100000 0000000        0011112233


Q ss_pred             HhcCCCCcEEEeCCCCC-HHHHHHHHHHh--------CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029287           81 MESSDSKKFLIDGFPRS-EENRAAFERIM--------GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVF  151 (196)
Q Consensus        81 l~~~~~~~~iid~~~~~-~~~~~~~~~~~--------~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~  151 (196)
                      +.  .+..+|+| |... ...+..+....        ...|+.+||||+|++++.+|+. |         ..+.+....|
T Consensus        95 l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~-r---------~~~~~~r~~~  161 (211)
T 1m7g_A           95 AD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP-K---------GLYKKAREGV  161 (211)
T ss_dssp             HH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT-T---------CHHHHHHHTS
T ss_pred             HH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhh-H---------HHHHHHHhcc
Confidence            33  34567788 5432 23333333321        1367999999999999999951 1         0111111122


Q ss_pred             HhchHhHHHHHHh-cCcEEEEeCCC-CHhHHHHHHHHHHHh
Q 029287          152 KALNLPVINYYAR-RGKLYTINAVG-TVDEIFEQVRAVFAA  190 (196)
Q Consensus       152 ~~~~~~~~~~~~~-~~~~~~I~~~~-~~~~v~~~i~~~i~~  190 (196)
                      ..........|.. ....++||+++ +++++.++|.+.+..
T Consensus       162 ~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          162 IKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             SSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            2111111112222 12347899988 999999999888765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.57  E-value=4.4e-15  Score=110.19  Aligned_cols=80  Identities=6%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCCCCc---HHHHHHHHHHHHhchHh----H-HHHHHhcCcEEEEeCCCCHhHHH
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN---IDTVRKRLQVFKALNLP----V-INYYARRGKLYTINAVGTVDEIF  181 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~---~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~I~~~~~~~~v~  181 (196)
                      ..||++||||+|++++.+|+.+|  ++..+.   .+.++.....|..+..+    . .+.+ ....+++||++++++++.
T Consensus       148 ~~pd~~i~l~~~~~~~~~R~~~R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~  224 (241)
T 2ocp_A          148 ITLHGFIYLQASPQVCLKRLYQR--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEV  224 (241)
T ss_dssp             HCCCEEEEEECCHHHHHHHHHHS--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCH
T ss_pred             cCCCEEEEEECCHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCH
Confidence            37999999999999999999988  443332   45554444455543210    0 0011 356889999999998888


Q ss_pred             HHHHHHHHhhh
Q 029287          182 EQVRAVFAALK  192 (196)
Q Consensus       182 ~~i~~~i~~~~  192 (196)
                      +.+...+..+.
T Consensus       225 ~~i~~i~~~i~  235 (241)
T 2ocp_A          225 TKQEDLMREVN  235 (241)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777766553

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.57  E-value=1.8e-14  Score=104.31  Aligned_cols=171  Identities=16%  Similarity=0.150  Sum_probs=90.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHHhc---C----ChhhHHHHHHhhcCCCCCHH-------
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREIAS---N----SEYGTTILNTIKEGKIVPSE-------   71 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~~~~-------   71 (196)
                      ..+++|+|.|||||||||+++.|++.++. .....+...|.....   +    .-....+...+..+......       
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            45678899999999999999999998742 222211111110000   0    00011222222222221100       


Q ss_pred             -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCC-CcEEEEee-cChHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029287           72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAE-PDIVLFFD-CPEEEMVNRVLNRNEGRVDDNIDTVRKRL  148 (196)
Q Consensus        72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~-p~~~i~ld-~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~  148 (196)
                       .....+...+.  .+..+|+|..+.+..   .+.. .... ..++|||+ +|++++.+|+.+|.    .++.+.+++++
T Consensus        90 ~~~~~~i~~~l~--~g~~vi~d~~~~~~~---~l~~-~~~~~~~~~i~l~~~s~e~l~~Rl~~R~----~~~~~~i~~rl  159 (204)
T 2qor_A           90 GTLKSEYDLAVG--EGKICLFEMNINGVK---QLKE-SKHIQDGIYIFVKPPSIDILLGRLKNRN----TEKPEEINKRM  159 (204)
T ss_dssp             EEEHHHHHHHHH--TTCEEEEECCHHHHH---HHHH-CSSCSCCEEEEEECSCHHHHHHHHHTCT----TSCHHHHHHHH
T ss_pred             cCCHHHHHHHHH--cCCeEEEEECHHHHH---HHHH-hcCCCCeEEEEEcCCCHHHHHHHHHHcC----CCCHHHHHHHH
Confidence             00123344444  356788887553322   2221 1110 23779999 99999999998872    23556666665


Q ss_pred             HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          149 QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      ........+.   +......+ |+++ +++++.++|.+.+...+
T Consensus       160 ~~~~~~~~~~---~~~~~d~v-i~n~-~~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          160 QELTREMDEA---DKVGFNYF-IVND-DLARTYAELREYLLGSY  198 (204)
T ss_dssp             HHHHHHHHHH---HHHTCSEE-EECS-SHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHh---hhccCcEE-EECc-CHHHHHHHHHHHHHHHh
Confidence            5443211110   23333444 4445 89999999988886543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.56  E-value=4.1e-14  Score=103.34  Aligned_cols=169  Identities=14%  Similarity=0.264  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH----HhcCChhhHHHHHH-------h-----------hcCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE----IASNSEYGTTILNT-------I-----------KEGK   66 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~-------l-----------~~~~   66 (196)
                      +++|+|+|++||||||+++.|++.+|+.+++.|.+++..    ...+.  +..+.+.       +           ..|.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~   80 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDNE   80 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCCc
Confidence            578999999999999999999999999999999998753    22221  1112221       0           1121


Q ss_pred             CC----CHHHH---------HHHHHHHH----h-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHH
Q 029287           67 IV----PSEVT---------VSLIQKEM----E-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNR  128 (196)
Q Consensus        67 ~~----~~~~~---------~~~i~~~l----~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~R  128 (196)
                      ..    .....         ++.+.+.+    . ...+.++|+++-...        ..+...++++|||++|++++.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~--------~~~~~~~~~vi~l~a~~e~~~~R  152 (219)
T 2h92_A           81 DVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIG--------TVVLPDADLKVYMIASVEERAER  152 (219)
T ss_dssp             ECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCC--------CCCCTTCSEEEEEECCHHHHHHH
T ss_pred             cchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCcc--------ceecCCCCEEEEEECCHHHHHHH
Confidence            11    00000         11111111    0 112345677763210        11334578999999999999999


Q ss_pred             Hhhcc--CCCCCCcHHHHHHHHHHH--HhchHhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHH
Q 029287          129 VLNRN--EGRVDDNIDTVRKRLQVF--KALNLPVINYYARRGKLYTINAVG-TVDEIFEQVRAVFA  189 (196)
Q Consensus       129 l~~r~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~  189 (196)
                      +.++.  ++. ..+.+.+.+++..-  ....+.....+ .....++||+++ +++++.++|.+.+.
T Consensus       153 ~~~~~~~r~~-~~~~e~~~~~~~~r~~~d~~r~~~~~~-~~~d~~~Id~~~~~~ee~~~~I~~~l~  216 (219)
T 2h92_A          153 RYKDNQLRGI-ESNFEDLKRDIEARDQYDMNREISPLR-KADDAVTLDTTGKSIEEVTDEILAMVS  216 (219)
T ss_dssp             HHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHCSSSCSC-CCTTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCc-ccCHHHHHHHHHHHHHhhhhhhccccc-cCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence            75421  122 22444444433211  11100000111 123446788774 99999999887764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.55  E-value=2.2e-13  Score=96.22  Aligned_cols=159  Identities=13%  Similarity=0.095  Sum_probs=83.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCcee--chhHHHHHHHhcCC---hhhHHHHHHhhcCCCC-CH--HHH----HHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL--SAGELLRREIASNS---EYGTTILNTIKEGKIV-PS--EVT----VSL   76 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i--~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~-~~--~~~----~~~   76 (196)
                      +++|+|.|+|||||||+++.|++.++..++  +.|.+... .....   ..+..+.   ..+... ..  ...    ...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   78 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEG   78 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchhhccchhhcccc---CCCccccchhHHHHHHHHHHH
Confidence            468899999999999999999999876655  46555432 11100   0000000   000000 00  011    112


Q ss_pred             HHHHHhcCCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhch
Q 029287           77 IQKEMESSDSKKFLIDGFPR-SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALN  155 (196)
Q Consensus        77 i~~~l~~~~~~~~iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~  155 (196)
                      +...+.  .+..+|+++... ....+..+...+...+..+|||++|++++.+|+.+|. .+...   ....   .+... 
T Consensus        79 ~~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~-~~~~~---~~~~---~~~~~-  148 (178)
T 1qhx_A           79 VVAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG-DRVAG---MAAK---QAYVV-  148 (178)
T ss_dssp             HHHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS-SSCTT---HHHH---HTTGG-
T ss_pred             HHHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC-Ccccc---hhhh---hchhh-
Confidence            222222  244677887543 3232333333343345567889999999999999873 22211   1111   11111 


Q ss_pred             HhHHHHHHhcCcEEEEeCCC-CHhHHHHHHHHH
Q 029287          156 LPVINYYARRGKLYTINAVG-TVDEIFEQVRAV  187 (196)
Q Consensus       156 ~~~~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~  187 (196)
                            +......++||++. +++++.+.|.+.
T Consensus       149 ------~~~~~~d~~idt~~~~~~~~~~~I~~~  175 (178)
T 1qhx_A          149 ------HEGVEYDVEVDTTHKESIECAWAIAAH  175 (178)
T ss_dssp             ------GTTCCCSEEEETTSSCHHHHHHHHHTT
T ss_pred             ------ccCCCCcEEEECCCCCHHHHHHHHHHH
Confidence                  01112346788764 889888887653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.52  E-value=4.9e-13  Score=94.64  Aligned_cols=113  Identities=16%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh---CCceechh-HHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHH--HHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAG-ELLRREIASNSEYGTTILNTIKEGKIVPSEVTVS--LIQKEM   81 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~i~~~l   81 (196)
                      ..++|+|+|++||||||+++.|++.+   |+.++..+ +.+++.+.........-          .......  .....+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~   73 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIAEVAKLF   73 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHHHHHHHH
Confidence            45789999999999999999999988   87766432 33332111100000000          0001111  111122


Q ss_pred             hcCCCCcEEEeCCCCC-HHHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhc
Q 029287           82 ESSDSKKFLIDGFPRS-EENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~-~~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r  132 (196)
                      .. .+..++.+ +.+. ...+..+...  ....|+.+|||++|++++.+|+.++
T Consensus        74 ~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           74 AD-AGLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             HH-TTCEEEEE-CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred             HH-CCCEEEEe-cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence            12 23333334 4332 2222222221  1236889999999999999998653

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.49  E-value=2.3e-15  Score=109.53  Aligned_cols=168  Identities=16%  Similarity=0.202  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChh-hHHHHHHhhc--CCCCCHHHH------------H
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEY-GTTILNTIKE--GKIVPSEVT------------V   74 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~------------~   74 (196)
                      ++|+|+|++||||||+++.|++.++...++...+ +. .....+. +..++..+..  +....+...            .
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~-~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL-AF-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV   78 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE-ES-SEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE-ee-cCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence            4789999999999999999999985322211000 00 0000011 1122222211  000001100            0


Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCHH--HH-----------HHHHHHh-----C-CCCcEEEEeecChHHHHHHHhhccCC
Q 029287           75 SLIQKEMESSDSKKFLIDGFPRSEE--NR-----------AAFERIM-----G-AEPDIVLFFDCPEEEMVNRVLNRNEG  135 (196)
Q Consensus        75 ~~i~~~l~~~~~~~~iid~~~~~~~--~~-----------~~~~~~~-----~-~~p~~~i~ld~~~~~~~~Rl~~r~~~  135 (196)
                      ..+...+  ..+..+|+|+++.+..  +.           ..+...+     . +.||.+|||++|++++.+|+.+|...
T Consensus        79 ~~i~~~l--~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~  156 (214)
T 1gtv_A           79 HTIQGLC--RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQR  156 (214)
T ss_dssp             HHHHHEE--EEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             HHHHHHh--hCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccccc
Confidence            1112222  1346788999886531  11           1112221     2 37999999999999999999988421


Q ss_pred             -------CCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHH
Q 029287          136 -------RVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA  186 (196)
Q Consensus       136 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~  186 (196)
                             +.+...+..+.....|....    ..+ ....+++||++++++++.++|.+
T Consensus       157 ~~~~~~d~~e~~~~~~~~~~~~~~~~~----~~~-~~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          157 DPGRARDNYERDAELQQRTGAVYAELA----AQG-WGGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             BBEEEEEEEEEEHHHHHHHHHHHHHHH----HEE-EEEEEEEEEEEEBHHHHHHHHC-
T ss_pred             ccccccccccccHHHHHHHHHHHHHHH----HhC-CCCCEEEEeCCCCHHHHHHHhcC
Confidence                   11111233332223343331    100 01467889999999999888753

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.48  E-value=6.9e-12  Score=90.43  Aligned_cols=169  Identities=17%  Similarity=0.173  Sum_probs=86.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh-c--CChhhHHHHHHh---hc----C----CCCCH---H
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-S--NSEYGTTILNTI---KE----G----KIVPS---E   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~-~--~~~~~~~~~~~l---~~----~----~~~~~---~   71 (196)
                      .++|+|.|++||||||+++.|++++|+.+++ +++++.... .  ..+.....-+..   ..    +    ....+   .
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAI   84 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHH
Confidence            3689999999999999999999999999999 777653210 0  001000000000   00    0    00000   1


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVF  151 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~  151 (196)
                      ...+.+.+.... ....+|++|-..+    ..+.   .....+.|||++|++++.+|+.++. +.   +.+...+.+...
T Consensus        85 ~~~~~i~~la~~-~~~~~Vi~Gr~g~----~vl~---~~~~~~~V~L~A~~e~r~~R~~~~~-~~---~~~~~~~~i~~~  152 (201)
T 3fdi_A           85 RQFNFIRKKANE-EKESFVIVGRCAE----EILS---DNPNMISAFILGDKDTKTKRVMERE-GV---DEKTALNMMKKM  152 (201)
T ss_dssp             HHHHHHHHHHHT-SCCCEEEESTTHH----HHTT---TCTTEEEEEEEECHHHHHHHHHHHH-TC---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh-cCCCEEEEECCcc----hhcC---CCCCeEEEEEECCHHHHHHHHHHHh-CC---CHHHHHHHHHHH
Confidence            122223332200 1234556543211    1110   0113588999999999999998763 22   223333332222


Q ss_pred             HhchHhHHHHHHh------cCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287          152 KALNLPVINYYAR------RGKLYTINAV-GTVDEIFEQVRAVFAA  190 (196)
Q Consensus       152 ~~~~~~~~~~~~~------~~~~~~I~~~-~~~~~v~~~i~~~i~~  190 (196)
                      ..........+..      ...-++||++ .+++++.+.|.+.++.
T Consensus       153 d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~  198 (201)
T 3fdi_A          153 DKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS  198 (201)
T ss_dssp             HHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence            2222222222211      1123567754 6899999998877753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.48  E-value=3e-12  Score=94.07  Aligned_cols=40  Identities=25%  Similarity=0.470  Sum_probs=36.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE   47 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~   47 (196)
                      .+++|+|.||+||||||+++.|++.+|+.+++.|.+++..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~   47 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA   47 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence            4679999999999999999999999999999999987653

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.44  E-value=1.7e-12  Score=93.56  Aligned_cols=157  Identities=15%  Similarity=0.134  Sum_probs=84.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh---CCc--eechhHHHHHHHhcCChh-hHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY---GLT--HLSAGELLRREIASNSEY-GTTILNTIKEGKIVPSEVTVSLIQKEM   81 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~---~~~--~i~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~i~~~l   81 (196)
                      .+.+|+|.|++||||||+++.|++.+   |..  +++.+++.. .+...... .......+         .....+...+
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~   93 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRAENI---------RRVGEVAKLF   93 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHH---------HHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHHHHH---------HHHHHHHHHH
Confidence            45789999999999999999999988   655  677654421 11100000 00000000         0011112222


Q ss_pred             hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHH------hhccCCCCCCcHHHHHHHHHHHHhch
Q 029287           82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV------LNRNEGRVDDNIDTVRKRLQVFKALN  155 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl------~~r~~~~~~~~~~~~~~~~~~~~~~~  155 (196)
                      .. .+..+++.........+..+.......+.++|||++|++++.+|+      ..|.........  +.       .  
T Consensus        94 ~~-~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~--~~-------~--  161 (200)
T 3uie_A           94 AD-AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTG--ID-------D--  161 (200)
T ss_dssp             HH-TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBT--TT-------B--
T ss_pred             Hh-CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCC--CC-------C--
Confidence            21 244556665544445555555444333455699999999999997      222111111000  00       0  


Q ss_pred             HhHHHHHHh-cCcEEEEeCC--CCHhHHHHHHHHHHHhh
Q 029287          156 LPVINYYAR-RGKLYTINAV--GTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       156 ~~~~~~~~~-~~~~~~I~~~--~~~~~v~~~i~~~i~~~  191 (196)
                           .|.. ....++||++  .+++++.+.|.+.+...
T Consensus       162 -----~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~~  195 (200)
T 3uie_A          162 -----PYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNK  195 (200)
T ss_dssp             -----CCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred             -----cCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence                 0111 1234678865  49999999988877553

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.42  E-value=2.2e-12  Score=102.91  Aligned_cols=122  Identities=19%  Similarity=0.183  Sum_probs=83.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      +.+.+|+|.|+|||||||+++.|++.+|+.+++.|++-        .                .......+...+.  .+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~--~g  309 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALR--QG  309 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHH--TT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHh--cC
Confidence            45678999999999999999999999999999987651        0                1112233344444  35


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccC---CCCCCcHHHHHHHHHHHHhc
Q 029287           87 KKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNE---GRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~---~~~~~~~~~~~~~~~~~~~~  154 (196)
                      ..+|+|+......++..+....  ...+-.+|||++|.+++.+|+.+|..   .+.....+.+......|+..
T Consensus       310 ~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P  382 (416)
T 3zvl_A          310 KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPP  382 (416)
T ss_dssp             CCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCC
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCC
Confidence            5688999887766665554432  12345679999999999999998842   11233456666555555554

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.41  E-value=9.9e-12  Score=94.41  Aligned_cols=121  Identities=13%  Similarity=0.227  Sum_probs=70.6

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCChhhHHHHHHhhcC----CCCCHHHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNY--GLTHLSAGELLRREIASNSEYGTTILNTIKEG----KIVPSEVTVSLIQK   79 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~i~~   79 (196)
                      ...+.+|+|.|+|||||||+++.|++.+  +..+++.|.+ +.....   ............    ...........+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~  105 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISR  105 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  7788887544 321110   000011110000    00011112233444


Q ss_pred             HHhcCCCCcEEEeCCCCCHHHHHHHHHHh-C-CCCcEEEEeecChHHH----HHHHhhc
Q 029287           80 EMESSDSKKFLIDGFPRSEENRAAFERIM-G-AEPDIVLFFDCPEEEM----VNRVLNR  132 (196)
Q Consensus        80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~-~-~~p~~~i~ld~~~~~~----~~Rl~~r  132 (196)
                      .+..  +..+|+|+...+..++..+...+ . ..+..+++|++|++.+    .+|+..|
T Consensus       106 ~l~~--g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          106 LSDQ--GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             HHHH--TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             HHhc--CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            4443  56688998887755444443332 1 1233458899999999    7887655

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.40  E-value=5.4e-11  Score=86.96  Aligned_cols=170  Identities=16%  Similarity=0.191  Sum_probs=87.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh-cCCh------hhHHHHH-H---hhcCC-----------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-SNSE------YGTTILN-T---IKEGK-----------   66 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~-~~~~------~~~~~~~-~---l~~~~-----------   66 (196)
                      .++|+|.|++||||||+++.|++++|+.+++ ++++..... .+-.      .+..... .   +..+.           
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~   92 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN   92 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence            4799999999999999999999999999999 555543221 1100      0110000 0   00000           


Q ss_pred             -CC-CHHHH----HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCC-cEEEEeecChHHHHHHHhhccCCCCCC
Q 029287           67 -IV-PSEVT----VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEP-DIVLFFDCPEEEMVNRVLNRNEGRVDD  139 (196)
Q Consensus        67 -~~-~~~~~----~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p-~~~i~ld~~~~~~~~Rl~~r~~~~~~~  139 (196)
                       .. .+..+    .+.+.+...   ....|+.|-..+    ..+. .....+ .+.|||++|++++.+|+.++. ++   
T Consensus        93 ~~~~~~~~~f~~~~~~i~~la~---~~~~Vi~Grggg----~vl~-~~~~~~~~~~VfL~A~~e~r~~Ri~~~~-~~---  160 (223)
T 3hdt_A           93 DKLTSPENLFKFQSEVMRELAE---SEPCIFVGRAAG----YVLD-QDEDIERLIRIFVYTDKVKKVQRVMEVD-CI---  160 (223)
T ss_dssp             -----HHHHHHHHHHHHHHHHH---HSCEEEESTTHH----HHHH-HCTTCCEEEEEEEECCHHHHHHHHHHHH-TC---
T ss_pred             cccccHHHHHHHHHHHHHHHHh---CCCEEEEeCCcc----hhcc-cccCCCCeEEEEEECCHHHHHHHHHHhc-CC---
Confidence             00 01111    122222222   223455533211    1110 001123 588999999999999998763 22   


Q ss_pred             cHHHHHHHHHHHHhchHhHHHHHH------hcCcEEEEeCC-CCHhHHHHHHHHHHHhh
Q 029287          140 NIDTVRKRLQVFKALNLPVINYYA------RRGKLYTINAV-GTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~I~~~-~~~~~v~~~i~~~i~~~  191 (196)
                      ..+...+.+........+...+|.      ....-++||++ .+++++.+.|.+.++..
T Consensus       161 ~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~~  219 (223)
T 3hdt_A          161 DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRLK  219 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            223333333222223233333221      11233567765 58999999998887653

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.37  E-value=2.7e-11  Score=100.36  Aligned_cols=161  Identities=14%  Similarity=0.225  Sum_probs=85.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh---CCceechh-HHHHHHHhcCChhh-HHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAG-ELLRREIASNSEYG-TTILNTIKEGKIVPSEVTVSLIQKEME   82 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~-~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~l~   82 (196)
                      ++++|+|+|++||||||+++.|++.+   |+.++..+ +.++..+....... ..-.+.+        ..+...+...+.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva~~~l~  122 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFAD  122 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHHHHHHh
Confidence            56889999999999999999999998   87765543 44443322111000 0000110        011111122222


Q ss_pred             cCCCCcEEEeCCCCC-HHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHh
Q 029287           83 SSDSKKFLIDGFPRS-EENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLP  157 (196)
Q Consensus        83 ~~~~~~~iid~~~~~-~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~  157 (196)
                        .+..++++ +... ...+..+...+  ...|+++||||+|++++.+|+.++.  ..|... ..       .|...   
T Consensus       123 --~G~iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~-~~-------~~~~~---  188 (630)
T 1x6v_B          123 --AGLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGE-IK-------GFTGI---  188 (630)
T ss_dssp             --TTCEEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC------------CBTT---
T ss_pred             --CCCEEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhh-HH-------HHHHh---
Confidence              24455555 3332 22233333322  2357889999999999999986421  011110 00       11111   


Q ss_pred             HHHHHHh-cCcEEEEeCC-CCHhHHHHHHHHHHHhh
Q 029287          158 VINYYAR-RGKLYTINAV-GTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       158 ~~~~~~~-~~~~~~I~~~-~~~~~v~~~i~~~i~~~  191 (196)
                       ...|.. ...-++||++ .+++++.++|.+.+...
T Consensus       189 -~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~  223 (630)
T 1x6v_B          189 -DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQER  223 (630)
T ss_dssp             -TBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred             -hhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence             011111 1123678876 59999999998887653

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=99.36  E-value=5.4e-12  Score=97.19  Aligned_cols=45  Identities=18%  Similarity=0.200  Sum_probs=34.4

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCCC--CcHHHHHHHHHHHHhchH
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVD--DNIDTVRKRLQVFKALNL  156 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~--~~~~~~~~~~~~~~~~~~  156 (196)
                      ..||++||||+|++++.+|+.+|  +|..  .+.+.+++..+.|.....
T Consensus       156 ~~PDLtIyLd~~pe~~l~RI~~R--gR~~Eri~~eyl~~vr~~Y~~l~~  202 (334)
T 1p6x_A          156 PQGGNIVVTTLNVEEHIRRLRTR--ARIGEQIDITLIATLRNVYFMLVN  202 (334)
T ss_dssp             CTTEEEEEEECCHHHHHHHHHHH--SCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCHHHHHHHHHhc--CCCcccCCHHHHHHHHHHHHHHHH
Confidence            56999999999999999999877  3322  255777776777877643

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.35  E-value=3.8e-12  Score=91.75  Aligned_cols=164  Identities=13%  Similarity=0.175  Sum_probs=80.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-------HhcCChhhHHHHHHhhcCCCC-----CH---HHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-------IASNSEYGTTILNTIKEGKIV-----PS---EVT   73 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~-----~~---~~~   73 (196)
                      ..+++|+||+||||||++++|+..+....+....+.+..       ..........+......+...     ..   ...
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTE   86 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccch
Confidence            358999999999999999999977642222211111000       000001111122211111100     00   000


Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec-ChHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC-PEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFK  152 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~-~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~  152 (196)
                      ...+.+.+..  +..++++..+.+.   ..+. .....+.. ||+.. |++++.+|+.+|.  +  ++.+.+.+++..+.
T Consensus        87 ~~~i~~~l~~--g~~vi~d~~~~~~---~~~~-~~~~~~~~-v~~~~~~~e~l~~Rl~~R~--~--~~~~~i~~rl~~~~  155 (205)
T 3tr0_A           87 KDWVLRQLKA--GRDVLLEIDWQGA---RQIR-ELFPPALS-IFILPPSIEALRERLIKRR--Q--DDTAIIEQRLALAR  155 (205)
T ss_dssp             HHHHHHHHHT--TCEEEEECCHHHH---HHHH-HHCTTCEE-EEEECSCHHHHHHHHHTCT--T--SCSSTHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCeEEEEECHHHH---HHHH-HhCCCcEE-EEEECcCHHHHHHHHHHhC--C--CCHHHHHHHHHHHH
Confidence            1233444443  4566777543221   1112 23334555 45544 6899999999883  2  23333444544442


Q ss_pred             hchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          153 ALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      ..    ..+ .....++ |+++ +++++.+++.+.+..
T Consensus       156 ~~----~~~-~~~~d~v-i~n~-~~~~~~~~l~~~i~~  186 (205)
T 3tr0_A          156 EE----MAH-YKEFDYL-VVND-NFDQAVQNLIHIISA  186 (205)
T ss_dssp             HH----HTT-GGGCSEE-EECS-SHHHHHHHHHHHHHH
T ss_pred             HH----Hhc-ccCCCEE-EECC-CHHHHHHHHHHHHHH
Confidence            22    111 1233444 4444 899999998888754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.33  E-value=1.3e-11  Score=92.17  Aligned_cols=120  Identities=21%  Similarity=0.284  Sum_probs=68.5

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhC--CceechhHHHHHHHhc----CChhhHHHHHHhhcCCCCCHHHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYG--LTHLSAGELLRREIAS----NSEYGTTILNTIKEGKIVPSEVTVSLIQK   79 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~--~~~i~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   79 (196)
                      ...|++|+|.|+|||||||+++.|++.++  ..+++.+.+ +.....    ..+.+....+....   .........+..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~  104 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTK  104 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHH
Confidence            34568999999999999999999999986  456666544 221100    00000000000000   001111222333


Q ss_pred             HHhcCCCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEeecChHHHHHHHhhc
Q 029287           80 EMESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~---~~~p~~~i~ld~~~~~~~~Rl~~r  132 (196)
                      .+.  .+..+|+|+.+....++..+...+   +..+ .++++++|++++.+|+..|
T Consensus       105 ~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v-~lv~l~~~~e~~~~R~~~R  157 (253)
T 2p5t_B          105 LSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEV-QLALIATKPELSYLSTLIR  157 (253)
T ss_dssp             HHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHHH
T ss_pred             HHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcE-EEEEEeCCHHHHHHHHHHH
Confidence            333  245789999887755544443332   2222 3468899999999999887

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.33  E-value=4.9e-12  Score=91.73  Aligned_cols=36  Identities=28%  Similarity=0.511  Sum_probs=31.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhC--CceechhHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYG--LTHLSAGEL   43 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~--~~~i~~~~~   43 (196)
                      .+.+++|+|++||||||+++.|+..++  +.+++.+..
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~   42 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY   42 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence            457999999999999999999999888  777776554

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.32  E-value=3.5e-11  Score=98.81  Aligned_cols=162  Identities=15%  Similarity=0.166  Sum_probs=87.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCC-----ceechhHHHHHHHhcCChhhHHHH-HHhhcCCCCCHHHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGL-----THLSAGELLRREIASNSEYGTTIL-NTIKEGKIVPSEVTVSLIQKEM   81 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~i~~~l   81 (196)
                      .+++|+++|++||||||+++.|++.++.     .+++.+ .+++.+.........-+ ..+        ..+...+...+
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~l--------~~i~~~~~~~l  441 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITNI--------LRVGFVASEIV  441 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHHH--------HHHHHHHHHHH
Confidence            4588999999999999999999998863     566654 44544322111110000 000        01112222333


Q ss_pred             hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHH
Q 029287           82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPD-IVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVIN  160 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~-~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (196)
                      .  .+..+|++........+..+...+. .++ ++|||++|++++.+|+.++.  ...+....++    .+......   
T Consensus       442 ~--~G~~VI~d~~~~~~~~r~~~~~~l~-~~d~~vV~L~~~~e~~~~Rl~r~~--~~~~~~~~i~----~~~~vr~~---  509 (546)
T 2gks_A          442 K--HNGVVICALVSPYRSARNQVRNMME-EGKFIEVFVDAPVEVCEERDVKGL--YKKAKEGLIK----GFTGVDDP---  509 (546)
T ss_dssp             H--TTCEEEEECCCCCHHHHHHHHTTSC-TTCEEEEEEECCGGGHHHHCCSSH--HHHC----------CCBTTTBC---
T ss_pred             h--CCCEEEEEcCCCCHHHHHHHHHHhh-cCCEEEEEEeCCHHHHHHHhhccc--cccccHHHHH----HHHhhhhc---
Confidence            3  3467888865444443333333232 367 78999999999999986320  0000001111    11000000   


Q ss_pred             HHHhcCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287          161 YYARRGKLYTINAV-GTVDEIFEQVRAVFAA  190 (196)
Q Consensus       161 ~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~  190 (196)
                      ++......++||++ .+++++.++|.+.+..
T Consensus       510 ~e~~~~adivIDts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          510 YEPPVAPEVRVDTTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             CCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             cccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            00001234678885 7999999999887754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.30  E-value=4.8e-12  Score=91.31  Aligned_cols=163  Identities=13%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh-CCceechhHHHHHH-------HhcCChhhHHHHHHhhcCCCCC-----HH---H
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTHLSAGELLRRE-------IASNSEYGTTILNTIKEGKIVP-----SE---V   72 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~-----~~---~   72 (196)
                      +.+|+|+|++||||||+++.|+..+ ....+..+...+..       ..........+......+..+.     ..   .
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   85 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGT   85 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecCC
Confidence            4689999999999999999999876 21111111111100       0000011112222222222111     00   0


Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEee--cChHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287           73 TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFD--CPEEEMVNRVLNRNEGRVDDNIDTVRKRLQV  150 (196)
Q Consensus        73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld--~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~  150 (196)
                      ....+...+..  +..+|+|..+....+   +...   .|+.++++.  ++++++.+|+.+|.    ..+.+.+.+++..
T Consensus        86 ~~~~i~~~l~~--g~~vv~d~~~~~~~~---~~~~---~~~~~~i~~~~~~~~~~~~Rl~~R~----~~~~~~~~~rl~~  153 (207)
T 2j41_A           86 PVQYVKDTMDE--GHDVFLEIEVEGAKQ---VRKK---FPDALFIFLAPPSLEHLRERLVGRG----TESDEKIQSRINE  153 (207)
T ss_dssp             EHHHHHHHHHT--TCEEEEECCGGGHHH---HHHH---CTTSEEEEEECCC-----------------------------
T ss_pred             CHHHHHHHHHc--CCeEEEEECHHHHHH---HHHh---cCCeEEEEEECCCHHHHHHHHHhcC----CCCHHHHHHHHHH
Confidence            11234444443  467788875543322   2222   245333333  45779999998872    2234445555544


Q ss_pred             HHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          151 FKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      +.....    + .....++ |+++ +++++.++|.+.+..
T Consensus       154 ~~~~~~----~-~~~~d~v-I~n~-~~e~~~~~i~~~l~~  186 (207)
T 2j41_A          154 ARKEVE----M-MNLYDYV-VVND-EVELAKNRIQCIVEA  186 (207)
T ss_dssp             --CGGG----G-GGGCSEE-EECS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHh----c-cccCCEE-EECC-CHHHHHHHHHHHHHH
Confidence            433211    1 1233444 5555 899999998887754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.29  E-value=3.2e-10  Score=79.57  Aligned_cols=122  Identities=20%  Similarity=0.247  Sum_probs=72.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH----HHHHHHHHHHhcC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE----VTVSLIQKEMESS   84 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~i~~~l~~~   84 (196)
                      .-+++|.|+|||||||+++.+..  |...++. +.++..+.+...            ......    .........+.. 
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-   72 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDEN------------DQTVTGAAFDVLHYIVSKRLQL-   72 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSSTT------------CGGGHHHHHHHHHHHHHHHHHT-
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCccc------------chhhHHHHHHHHHHHHHHHHhC-
Confidence            46889999999999999998652  3444444 333333222211            000111    111112222222 


Q ss_pred             CCCcEEEeCCCC---CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287           85 DSKKFLIDGFPR---SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQV  150 (196)
Q Consensus        85 ~~~~~iid~~~~---~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~  150 (196)
                       +...+.+....   ++.|++.+++++...|.+ ++||+|+..+..|...|..  ..-..+.+......
T Consensus        73 -g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~-lllDEPt~~Ld~~~~~R~~--~~~~~~vi~~~~~~  137 (171)
T 4gp7_A           73 -GKLTVVDATNVQESARKPLIEMAKDYHCFPVA-VVFNLPEKVCQERNKNRTD--RQVEEYVIRKHTQQ  137 (171)
T ss_dssp             -TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEE-EEECCCHHHHHHHHHTCSS--CCCCHHHHHHHHHH
T ss_pred             -CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEE-EEEeCCHHHHHHHHhcccC--CCCCHHHHHHHHHH
Confidence             33445665433   367899999999989998 8899999999999887731  12345555443333

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.28  E-value=5.5e-12  Score=98.14  Aligned_cols=166  Identities=18%  Similarity=0.258  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH----------------HhcCCh-----hhHHHHHHhhcCCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE----------------IASNSE-----YGTTILNTIKEGKI-   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~----------------~~~~~~-----~~~~~~~~l~~~~~-   67 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+....                +....+     ...+..+++..+.. 
T Consensus        31 e~~~llGpsGsGKSTLLr~ia---Gl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~  107 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLA---GFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN  107 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTT
T ss_pred             CEEEEECCCCchHHHHHHHHh---cCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence            478999999999999999999   87766655542111                111111     11234555554322 


Q ss_pred             --CCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           68 --VPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        68 --~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                        .........+.+.++..+-..   --...++.+++|++++++++...|++ ++||+|+..+.......-    .....
T Consensus       108 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l-LLLDEPts~LD~~~r~~l----~~~l~  182 (359)
T 3fvq_A          108 GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL-ILLDEPFSALDEQLRRQI----REDMI  182 (359)
T ss_dssp             SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTTTSCHHHHHHH----HHHHH
T ss_pred             cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCcccCCHHHHHHH----HHHHH
Confidence              222222233333333222111   12344666799999999999999999 889999933322222110    00000


Q ss_pred             HHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          143 TVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       143 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .+.+.   ...|.+|+...+..++++..++.   |...+++++++..
T Consensus       183 ~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~  229 (359)
T 3fvq_A          183 AALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ  229 (359)
T ss_dssp             HHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence            00000   12577788877777777544442   4456788888754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.27  E-value=1.6e-12  Score=101.25  Aligned_cols=165  Identities=16%  Similarity=0.246  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCCh-----hhHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSE-----YGTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~-----~~~~~~~~l~~~--   65 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+.                 ++.+...++     ...++.+++..+  
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~---GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~  131 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVN---LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE  131 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCchHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHH
Confidence            478999999999999999999   77655544432                 111111111     011222222211  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                       ...+.......+.+.+...+-..   .-...++.++.|++++++++...|++ +++|+|+.-+.......    ..+-.
T Consensus       132 ~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~l-LLlDEPTs~LD~~~~~~----i~~lL  206 (366)
T 3tui_C          132 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV-LLCDQATSALDPATTRS----ILELL  206 (366)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSE-EEEESTTTTSCHHHHHH----HHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEECCCccCCHHHHHH----HHHHH
Confidence             11222222333333333222111   11334556799999999999999999 88999993222111111    00000


Q ss_pred             HHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          142 DTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       142 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                      ..+.+.   ...+.+|+...+..+|++..++.   |...+++++++.
T Consensus       207 ~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~  253 (366)
T 3tui_C          207 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  253 (366)
T ss_dssp             HHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred             HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            111110   12466777777878887654443   556778888764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.27  E-value=2.1e-12  Score=101.20  Aligned_cols=166  Identities=18%  Similarity=0.251  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH------------HhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE------------IASNSE-----YGTTILNTIKEG---KIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~------------~~~~~~-----~~~~~~~~l~~~---~~~~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+....            +....+     ...++.+++..+   ....
T Consensus        30 e~~~llGpsGsGKSTLLr~ia---Gl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~  106 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIA---GLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK  106 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCC
T ss_pred             CEEEEEcCCCchHHHHHHHHH---cCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCC
Confidence            478999999999999999999   87766666543111            011111     011223333221   1123


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .......+.+.++..+-..+   -...++.++.|++++++++...|++ ++||+|+..+.......    .......+.+
T Consensus       107 ~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l-LLLDEPts~LD~~~~~~----l~~~l~~l~~  181 (381)
T 3rlf_A          107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV-FLLDEPLSNLDAALRVQ----MRIEISRLHK  181 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE-EEEESTTTTSCHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE-EEEECCCcCCCHHHHHH----HHHHHHHHHH
Confidence            33333344444443222221   1334556799999999999999998 88999994333222221    0001111111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      +   ...|.+|+...+..++++..++.   |...++++++++.
T Consensus       182 ~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~  224 (381)
T 3rlf_A          182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (381)
T ss_dssp             HHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence            1   12577888888888877544443   4456788888654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.26  E-value=1.8e-11  Score=86.93  Aligned_cols=163  Identities=17%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-CceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHH--------HH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYG-LTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSE--------VT   73 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~-~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~--------~~   73 (196)
                      .|+|.|||||||||+++.|.+.+. ...++.....| ...++..        ....+.+.+..+..+...        ..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR-~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~   81 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR-TPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECS-CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEecc-CCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence            478899999999999999998863 22222211211 1112111        233456666666554321        11


Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA  153 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~  153 (196)
                      ...+...+..  +..+|++.-+.+..+   +.......+-.++++-.+.+.+.+|+.+|    ..++.+.++.|+.....
T Consensus        82 ~~~v~~~l~~--g~~vil~id~~g~~~---~k~~~~~~~~~Ifi~pps~e~L~~RL~~R----g~e~~e~i~~Rl~~a~~  152 (186)
T 1ex7_A           82 VASVKQVSKS--GKTCILDIDMQGVKS---VKAIPELNARFLFIAPPSVEDLKKRLEGR----GTETEESINKRLSAAQA  152 (186)
T ss_dssp             HHHHHHHHHH--TSEEEEECCHHHHHH---HHTCGGGCCEEEEEECSCHHHHHHHHHHH----CCSCHHHHHHHHHHHHH
T ss_pred             cceeeehhhC--CCEEEecCCHHHHHH---HHHhcccCceEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHH
Confidence            3445555554  556777754322211   11111123444333344558999999998    34577888887765443


Q ss_pred             chHhHHHHHHh-cCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          154 LNLPVINYYAR-RGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       154 ~~~~~~~~~~~-~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      .    +.+... ....+++|  .++++..+++.++|.
T Consensus       153 e----~~~~~~~~fD~vIvN--ddle~a~~~l~~iI~  183 (186)
T 1ex7_A          153 E----LAYAETGAHDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             H----HHHHTTTCSSEEEEC--SSHHHHHHHHHHHHT
T ss_pred             H----HhhccccCCcEEEEC--cCHHHHHHHHHHHHH
Confidence            2    111111 12333333  378888888887763

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.26  E-value=4.5e-11  Score=98.67  Aligned_cols=164  Identities=13%  Similarity=0.101  Sum_probs=83.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC----C--ceechhHHHHHHHhcCChhhHHH-HHHhhcCCCCCHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG----L--THLSAGELLRREIASNSEYGTTI-LNTIKEGKIVPSEVTVSLIQK   79 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~----~--~~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~i~~   79 (196)
                      ..+++|.|+|++||||||+++.|++.++    .  ..++. +.+++.+.........- .+.+        ..+...+..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~  464 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVATE  464 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHHHH
Confidence            4568999999999999999999999976    2  34554 44454322111100000 0000        001122222


Q ss_pred             HHhcCCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhH
Q 029287           80 EMESSDSKKFLIDGFPRSEENRAAFERIMGA-EPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPV  158 (196)
Q Consensus        80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~-~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (196)
                      .+.  .+..+|++.+......+..+...+.. .+.++||||+|++++.+|..+..       ..  ..+......+....
T Consensus       465 ~~~--~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l-------~~--~~~~~~i~~~~~~r  533 (573)
T 1m8p_A          465 LTR--AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGI-------YA--AARRGEIKGFTGVD  533 (573)
T ss_dssp             HHH--TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCH-------HH--HHHTTSSSSCBTTT
T ss_pred             HHh--CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccc-------hh--hhhHHHHHHHHhcc
Confidence            222  24556676444333333333332221 24588999999999999963320       00  00000000000000


Q ss_pred             HHHHHhcCcEEEEeCCC-CHhHHHHHHHHHHHh
Q 029287          159 INYYARRGKLYTINAVG-TVDEIFEQVRAVFAA  190 (196)
Q Consensus       159 ~~~~~~~~~~~~I~~~~-~~~~v~~~i~~~i~~  190 (196)
                      ..++.....-++||++. +++++.++|.+.+..
T Consensus       534 ~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          534 DPYETPEKADLVVDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             BCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            00111112346788764 999999998887754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.25  E-value=9.2e-12  Score=97.49  Aligned_cols=166  Identities=17%  Similarity=0.246  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCChh-----hHHHHHHhhcCCC---CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSEY-----GTTILNTIKEGKI---VP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~~-----~~~~~~~l~~~~~---~~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+...            .+....+.     ..+..+++..+..   ..
T Consensus        38 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~  114 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIA---GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP  114 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC
T ss_pred             CEEEEECCCCChHHHHHHHHH---cCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence            478999999999999999999   8766555544211            11111111     1124555554422   22


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .......+.+.++..+-..+   -...++.++.|++++++++...|++ ++||+|+..+.......    .......+.+
T Consensus       115 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~l~~l~~  189 (372)
T 1v43_A          115 KDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV-LLMDEPLSNLDAKLRVA----MRAEIKKLQQ  189 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE-EEEESTTTTSCHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCCccCCHHHHHH----HHHHHHHHHH
Confidence            33223334444443222111   1345777899999999999999999 88999994333332222    0000111111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .   ...|.+|+...+..++++..++.   |...++++++++.
T Consensus       190 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  232 (372)
T 1v43_A          190 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR  232 (372)
T ss_dssp             HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            1   12456677777777776433332   3345678888654

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=99.25  E-value=1.3e-10  Score=90.59  Aligned_cols=48  Identities=13%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHh
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLP  157 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~  157 (196)
                      .+|++++++|+|++++.+|+.+|.+.....+.+.+++..+.|......
T Consensus       198 ~ppdlt~Lldl~pe~~l~RI~~RgR~~Eri~leyl~rVr~~Y~~la~t  245 (376)
T 1of1_A          198 LPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANT  245 (376)
T ss_dssp             CTTCEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHH
Confidence            346888889999999999998873211112567777777778776443

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=99.23  E-value=1.2e-10  Score=89.69  Aligned_cols=47  Identities=13%  Similarity=0.171  Sum_probs=33.5

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchH
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNL  156 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~  156 (196)
                      .+||+++++|+|++++.+|+.+|.+.....+.+.+++..+.|.....
T Consensus       153 ~ppdlt~lldl~pe~~l~RI~~Rgr~~Eri~~~yl~rvr~~Y~~l~~  199 (331)
T 1e2k_A          153 LPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLAN  199 (331)
T ss_dssp             CTTCEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence            35689899999999999999887321111256777777777877644

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.21  E-value=3.4e-12  Score=99.48  Aligned_cols=166  Identities=17%  Similarity=0.241  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcCCCC---C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEGKIV---P   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~~~~---~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+...            .+....+     ...+..+++..+...   +
T Consensus        30 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~  106 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLA---GIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRIS  106 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSH
T ss_pred             CEEEEEcCCCchHHHHHHHHH---CCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence            478999999999999999999   8776655544211            1111111     112344554433211   1


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .......+.+.++..+-..+   -...++.++.|++++++++...|++ ++||+|+..+.......    ..+....+.+
T Consensus       107 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~l~~l~~  181 (359)
T 2yyz_A          107 KDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV-LLFDEPLSNLDANLRMI----MRAEIKHLQQ  181 (359)
T ss_dssp             HHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTTTSCHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECCcccCCHHHHHH----HHHHHHHHHH
Confidence            11112223333332222111   1334666799999999999999998 88999994333322221    0000111111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .   ...|.+|+...+..++++..++.   |...++++++++.
T Consensus       182 ~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~  224 (359)
T 2yyz_A          182 ELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS  224 (359)
T ss_dssp             HHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            1   12456677777777776433332   3345678888754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.20  E-value=1.6e-11  Score=95.74  Aligned_cols=166  Identities=20%  Similarity=0.253  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEG---KIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~---~~~~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+...            .+....+     ...+..+++..+   ....
T Consensus        30 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~  106 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIA---GIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAP  106 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCCchHHHHHHHHh---cCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence            478999999999999999999   8766555544211            1111111     011223333221   1112


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .....+.+.+.++..+-..+   -...++.++.|++++++++...|++ ++||+|+..+.......    .......+.+
T Consensus       107 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~l~~l~~  181 (362)
T 2it1_A          107 REEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV-LLLDEPLSNLDALLRLE----VRAELKRLQK  181 (362)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESGGGGSCHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECccccCCHHHHHH----HHHHHHHHHH
Confidence            22222333444443222221   1334666799999999999999999 88999994443333222    0000111111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      +   ...|.+|+...+..++++..++.   |...++++++++.
T Consensus       182 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~  224 (362)
T 2it1_A          182 ELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK  224 (362)
T ss_dssp             HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            1   12456677777777776433332   3345678887654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.20  E-value=2.9e-11  Score=87.61  Aligned_cols=164  Identities=16%  Similarity=0.279  Sum_probs=79.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHH-------HhcCChhhHHHHHHhhcCCCCCHH--------H
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRRE-------IASNSEYGTTILNTIKEGKIVPSE--------V   72 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~--------~   72 (196)
                      +.+|+|.||+||||||+++.|++.++- .........+..       ..........+.+.+..+......        .
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg~   87 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGT   87 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCCC
Confidence            468899999999999999999988742 111111000000       000000112233332222221100        0


Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecC-hHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029287           73 TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCP-EEEMVNRVLNRNEGRVDDNIDTVRKRLQVF  151 (196)
Q Consensus        73 ~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~-~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~  151 (196)
                      ....+.+.+..  +..+++|..+.+..   .+.. ..+.+ .+||+..| ++++.+|+.+|.    .++.+.+++|+...
T Consensus        88 ~~~~i~~~l~~--g~~vild~~~~g~~---~~~~-~~~~~-~~i~i~~ps~~~l~~Rl~~R~----~~~~e~i~~Rl~~~  156 (208)
T 3tau_A           88 PLEYVEEKLAA--GVDIFLEIEVQGAM---QVRK-AMPEG-IFIFLTPPDLSELKNRIIGRG----TESMEVVEERMETA  156 (208)
T ss_dssp             EHHHHHHHHHT--TCCEEEECCHHHHH---HHHH-HCTTS-EEEEEECTTTTTSSCC-----------CCHHHHHHHHHH
T ss_pred             cHHHHHHHHHc--CCeEEEEeeHHHHH---HHHH-hCCCe-EEEEEeCCCHHHHHHHHHhcC----CCCHHHHHHHHHHH
Confidence            01233444443  55677876432221   2222 22233 44666655 789999998882    23456677766554


Q ss_pred             HhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          152 KALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      ...    ..+ .....++++| + +.+++.+++...+..
T Consensus       157 ~~e----~~~-~~~~d~vivN-~-~~~~~~~~l~~~i~~  188 (208)
T 3tau_A          157 KKE----IEM-MASYDYAVVN-D-VVANAVQKIKGIVET  188 (208)
T ss_dssp             HHH----HHH-GGGSSEEEEC-S-SHHHHHHHHHHHHHH
T ss_pred             HHH----HHh-hccCCEEEEC-c-CHHHHHHHHHHHHHH
Confidence            332    112 2233444444 3 689999888877754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.20  E-value=1.9e-11  Score=95.13  Aligned_cols=166  Identities=20%  Similarity=0.310  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH------------HhcCChh-----hHHHHHHhhcC---CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE------------IASNSEY-----GTTILNTIKEG---KIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~------------~~~~~~~-----~~~~~~~l~~~---~~~~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+....            +....+.     ..+..+++..+   ...+
T Consensus        42 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~  118 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIA---GLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP  118 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC
Confidence            478999999999999999999   87665555442111            1111110     11122332211   1122


Q ss_pred             HHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .......+.+.++..+-..+   -...++.++.|++++++++...|++ ++||+|+..+.......    ...-...+.+
T Consensus       119 ~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~l~~l~~  193 (355)
T 1z47_A          119 KDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV-LLFDEPFAAIDTQIRRE----LRTFVRQVHD  193 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTCCSSHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEeCCcccCCHHHHHH----HHHHHHHHHH
Confidence            22222333444443222211   1334666799999999999999998 88999993332222211    0000111111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      +   ...|.+|+...+..++++..++.   |...++++++++.
T Consensus       194 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  236 (355)
T 1z47_A          194 EMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK  236 (355)
T ss_dssp             HHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             hcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            1   12456677777777776433332   3345678887653

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.19  E-value=2.8e-10  Score=93.02  Aligned_cols=146  Identities=14%  Similarity=0.216  Sum_probs=80.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCce-----echhHHHHHHHhcCChhhHHHHHHhhcCCCC----CHHHH---HH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTH-----LSAGELLRREIASNSEYGTTILNTIKEGKIV----PSEVT---VS   75 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~---~~   75 (196)
                      .+.+|++.|+|||||||+++.|++.+++.+     ++.|++.+.. .......    +........    .....   ..
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~-~~~~~~~----~~f~~~~~~~~~~re~~~~~~l~  108 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA-VKQYSSY----NFFRPDNEEAMKVRKQCALAALR  108 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HSCCCCG----GGGCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh-ccCCccc----cccCcccHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999985433     5667755443 3221100    000000000    00011   12


Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEeecC-hHHHHHHHhhccCCCCC----Cc---HHHHH
Q 029287           76 LIQKEMESSDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCP-EEEMVNRVLNRNEGRVD----DN---IDTVR  145 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~--~~p~~~i~ld~~-~~~~~~Rl~~r~~~~~~----~~---~~~~~  145 (196)
                      .+...+....+..+|+|+...+...+..+.....  ...-++|++.|| ++.+.+|+.+|...+..    +.   .+.+.
T Consensus       109 ~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~  188 (520)
T 2axn_A          109 DVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFM  188 (520)
T ss_dssp             HHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHH
Confidence            2223332234677899998888766655543321  122344666777 67777888666433221    22   23456


Q ss_pred             HHHHHHHhchHhH
Q 029287          146 KRLQVFKALNLPV  158 (196)
Q Consensus       146 ~~~~~~~~~~~~~  158 (196)
                      +|+..|.....++
T Consensus       189 ~Ri~~y~~~Yepi  201 (520)
T 2axn_A          189 KRISCYEASYQPL  201 (520)
T ss_dssp             HHHHHHHTTCCCC
T ss_pred             HHHHhhhhhhccc
Confidence            6777777765443

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=99.19  E-value=1e-09  Score=78.44  Aligned_cols=161  Identities=14%  Similarity=0.155  Sum_probs=89.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhc--CChhhHH---------HHHHhh-cCCCCCHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIAS--NSEYGTT---------ILNTIK-EGKIVPSEV   72 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~--~~~~~~~---------~~~~l~-~~~~~~~~~   72 (196)
                      .+++|+|+|.+||||+|+++.|.+.+|   +..+..++.+++....  +.+....         .+..+. .+     ..
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g-----~~   84 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWG-----EE   84 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHH-----HH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHH-----HH
Confidence            458999999999999999999998885   6678888988753221  1111000         000000 00     00


Q ss_pred             HHHH-----HHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH
Q 029287           73 TVSL-----IQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR  147 (196)
Q Consensus        73 ~~~~-----i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~  147 (196)
                      ....     +...+.......||+++. ........|...+. ..-.+|.+.+|++++.+|...+.  ...++.+.    
T Consensus        85 ~R~~d~~~~~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~~~g-~~~~iirI~as~~~R~~Rg~~~~--~~~Dd~es----  156 (202)
T 3ch4_B           85 KRQADPGFFCRKIVEGISQPIWLVSDT-RRVSDIQWFREAYG-AVTQTVRVVALEQSRQQRGWVFT--PGVDDAES----  156 (202)
T ss_dssp             HHHHCTTTTHHHHSBTCCCSEEEECCC-CSHHHHHHHHHHHG-GGEEEEEEEECHHHHHHTTCCCC--TTTTTSHH----
T ss_pred             HHhcCchHHHHHHHHhcCCCcEEEeCC-CCHHHHHHHHHhCC-CcEEEEEEECCHHHHHHHhhhcc--cccccccc----
Confidence            0000     111122223456888877 44455556665554 22345899999999999953331  11112111    


Q ss_pred             HHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          148 LQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                       +    ..   +..+ .... ++|+++++.+++.+++...+..+
T Consensus       157 -E----~g---L~~~-~~~D-~vI~Ndgt~eel~~~v~~ll~~~  190 (202)
T 3ch4_B          157 -E----CG---LDNF-GDFD-WVIENHGVEQRLEEQLENLIEFI  190 (202)
T ss_dssp             -H----HT---TTTC-CCCS-EEEEECSCHHHHHHHHHHHHHHH
T ss_pred             -c----cC---CCCC-CcCC-EEEEeCCCHHHHHHHHHHHHHHH
Confidence             0    00   0001 1122 45777789999988887776554

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.19  E-value=2.1e-11  Score=92.67  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=30.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLR   45 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~   45 (196)
                      ++++|+|+|++||||||+++.|++.+|     +.+++.|++++
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            467999999999999999999999887     67888877663

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.18  E-value=1.6e-11  Score=92.22  Aligned_cols=161  Identities=19%  Similarity=0.290  Sum_probs=86.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKI---   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~---   67 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+.              ++......+     ...++.+++..+..   
T Consensus        38 e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  114 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLT---GYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG  114 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHT---SSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC
Confidence            478999999999999999999   76655544331              111111111     11223444432211   


Q ss_pred             -CCHHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCC------CCcEEEEeecChHH----HHHHHhhccCCC
Q 029287           68 -VPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGA------EPDIVLFFDCPEEE----MVNRVLNRNEGR  136 (196)
Q Consensus        68 -~~~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~------~p~~~i~ld~~~~~----~~~Rl~~r~~~~  136 (196)
                       .........+.+.+........-...++.++.|++.+++++..      .|++ ++||+|+.-    ..+++.+-    
T Consensus       115 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l-LllDEPts~LD~~~~~~i~~~----  189 (266)
T 4g1u_C          115 GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW-LFLDEPTSALDLYHQQHTLRL----  189 (266)
T ss_dssp             STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE-EEECCCCSSCCHHHHHHHHHH----
T ss_pred             cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE-EEEeCccccCCHHHHHHHHHH----
Confidence             1112222333333333222112245577789999999999887      8998 889999822    11111110    


Q ss_pred             CCCcHHHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          137 VDDNIDTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       137 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                          ...+.+.   ...+.+|+...+..++++..++.   +...++++++..
T Consensus       190 ----l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~  237 (266)
T 4g1u_C          190 ----LRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN  237 (266)
T ss_dssp             ----HHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred             ----HHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence                1111111   12455677777777776543332   334567777753

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=99.18  E-value=1.7e-10  Score=89.02  Aligned_cols=47  Identities=15%  Similarity=0.039  Sum_probs=30.5

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchH
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNL  156 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~  156 (196)
                      ..||++||||+|+++..+|+.+|.+.......+.+++..+.|.....
T Consensus       165 ~~PDltI~Ld~~pe~~l~RI~~RgR~~Erie~~yl~rvr~~Y~~l~~  211 (341)
T 1osn_A          165 PPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVYIMLIN  211 (341)
T ss_dssp             CSCCEEEEEECCHHHHHHHCC------CCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHH
Confidence            46999999999999999999877221111235666666666776643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.17  E-value=8.9e-12  Score=93.38  Aligned_cols=109  Identities=27%  Similarity=0.385  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCCh-----hhHHHHHHhhcC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSE-----YGTTILNTIKEG---   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~-----~~~~~~~~l~~~---   65 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+.                ++.+....+     ...+..+++..+   
T Consensus        51 ei~~liG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~  127 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK  127 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence            478999999999999999999   66544333321                222221111     111222322211   


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ...........+.+.++..+-..   --...++.++.|++.+++++...|++ ++||+|+
T Consensus       128 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l-llLDEPt  187 (263)
T 2olj_A          128 VRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI-MLFDEPT  187 (263)
T ss_dssp             TSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE-EEEeCCc
Confidence             11122222223333333222111   12345667799999999999999998 7899999

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.17  E-value=4.1e-10  Score=83.55  Aligned_cols=29  Identities=45%  Similarity=0.720  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLT   36 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~   36 (196)
                      .+.+|+|+||+||||||+++.|+..+|..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            45799999999999999999999988754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.17  E-value=1e-11  Score=91.93  Aligned_cols=109  Identities=20%  Similarity=0.236  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcCCCC-CHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEGKIV-PSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~~~~-~~~   71 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+...            .+...++     ...+..+++..+... ...
T Consensus        25 e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~  101 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIA---GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV  101 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred             EEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc
Confidence            478999999999999999999   7765555444211            1111111     122345555443221 111


Q ss_pred             HHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           72 VTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...+.+.+.++..+-   ...-...++.++.|++.+++++...|++ ++||+|+
T Consensus       102 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l-llLDEPt  154 (240)
T 2onk_A          102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL-LLLDEPL  154 (240)
T ss_dssp             HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS-BEEESTT
T ss_pred             hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            112334444443221   1112445777899999999999999999 7899999

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.16  E-value=6.9e-12  Score=94.03  Aligned_cols=30  Identities=30%  Similarity=0.625  Sum_probs=26.6

Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ..++.++.|++.+++++...|++ ++||+|+
T Consensus       152 ~~LSgGq~qRv~lAraL~~~p~l-llLDEPt  181 (262)
T 1b0u_A          152 VHLSGGQQQRVSIARALAMEPDV-LLFDEPT  181 (262)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCCSE-EEEESTT
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence            34667799999999999999999 8899999

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.16  E-value=1.8e-11  Score=95.05  Aligned_cols=165  Identities=19%  Similarity=0.253  Sum_probs=84.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCChh-----hHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSEY-----GTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~~-----~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+.            ++.+....+.     ..+..+++..+.   ..+
T Consensus        27 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~  103 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIA---GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK  103 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHH---TSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC
T ss_pred             CEEEEECCCCccHHHHHHHHH---cCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC
Confidence            478999999999999999999   87665554432            1111111110     111222222110   011


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH--
Q 029287           70 SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR--  147 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~--  147 (196)
                      .......+.+.+.......--...++.++.|++++++++...|++ ++||+|+..+.......-    ......+.++  
T Consensus       104 ~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l-LLLDEP~s~LD~~~~~~l----~~~l~~l~~~~g  178 (348)
T 3d31_A          104 DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI-LLLDEPLSALDPRTQENA----REMLSVLHKKNK  178 (348)
T ss_dssp             CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE-EEEESSSTTSCHHHHHHH----HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEECccccCCHHHHHHH----HHHHHHHHHhcC
Confidence            111222233333332211112344666799999999999999999 889999943333222210    0001111110  


Q ss_pred             -HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          148 -LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                       ...|.+|+...+..++++..++.   |...++++++++
T Consensus       179 ~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  217 (348)
T 3d31_A          179 LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE  217 (348)
T ss_dssp             CEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence             12455677666666666422221   223456777754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.15  E-value=6.3e-11  Score=85.36  Aligned_cols=27  Identities=22%  Similarity=0.270  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.+++|+|++||||||+++.|+..+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999999876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.14  E-value=5.5e-11  Score=87.75  Aligned_cols=110  Identities=20%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCCh-----hhHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSE-----YGTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~-----~~~~~~~~l~~~-   65 (196)
                      -+++|.||+||||||++++|+   |+...+.|++.                  ++.+....+     ...++.+++..+ 
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~  108 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIG---CLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL  108 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHH
Confidence            478999999999999999999   76654444331                  111222111     111233333211 


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCCCCcE----EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           66 -----KIVPSEVTVSLIQKEMESSDSKKF----LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        66 -----~~~~~~~~~~~i~~~l~~~~~~~~----iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                           ...........+.+.+....-...    -...++.++.|++.+++++...|++ ++||+|+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l-lllDEPts  174 (235)
T 3tif_A          109 IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPI-ILADQPTW  174 (235)
T ss_dssp             HTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTT
T ss_pred             HhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCcc
Confidence                 122333333444444443322111    2344666799999999999999999 88999993

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.13  E-value=2.1e-11  Score=95.00  Aligned_cols=163  Identities=20%  Similarity=0.230  Sum_probs=89.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-----------------HhcCCh-----hhHHHHHHhhcCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-----------------IASNSE-----YGTTILNTIKEGK-   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-----------------~~~~~~-----~~~~~~~~l~~~~-   66 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+....                 +....+     ...+..+++..+. 
T Consensus        32 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~  108 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIA---GLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT  108 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHH---TSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence            478999999999999999999   87665555432111                 110001     1123444444322 


Q ss_pred             --CCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           67 --IVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        67 --~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                        ..+.......+.+.++..+-..+   -...++.++.|++++++++...|++ ++||+|+..+.......       -.
T Consensus       109 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l-LLLDEP~s~LD~~~r~~-------l~  180 (353)
T 1oxx_K          109 NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL-LLLDEPFSNLDARMRDS-------AR  180 (353)
T ss_dssp             TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTTTSCGGGHHH-------HH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEECCcccCCHHHHHH-------HH
Confidence              12223223334444443222211   1344666799999999999999999 88999993332222111       00


Q ss_pred             HHHHHH------HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          142 DTVRKR------LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       142 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      +.+.+.      ...|.+|+...+..++++..++.   |...++++++++.
T Consensus       181 ~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~  231 (353)
T 1oxx_K          181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (353)
T ss_dssp             HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            111111      12456677777777776433332   3344678887653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.13  E-value=2.9e-11  Score=94.78  Aligned_cols=166  Identities=18%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH------------------HhcCCh-----hhHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE------------------IASNSE-----YGTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~------------------~~~~~~-----~~~~~~~~l~~~-   65 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+....                  +....+     ...+..+++..+ 
T Consensus        30 e~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~  106 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIA---GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL  106 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHH---cCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence            478999999999999999999   87665555442111                  010010     011122332221 


Q ss_pred             --CCCCHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           66 --KIVPSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        66 --~~~~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                        ...........+.+.++   ......--...++.++.|++++++++...|++ ++||+|+..+.......    ....
T Consensus       107 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-LLLDEP~s~LD~~~r~~----l~~~  181 (372)
T 1g29_1          107 KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV-FLMDEPLSNLDAKLRVR----MRAE  181 (372)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE-EEEECTTTTSCHHHHHH----HHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE-EEECCCCccCCHHHHHH----HHHH
Confidence              11122222222333333   22111111344666799999999999999998 88999994333322221    0000


Q ss_pred             HHHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          141 IDTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       141 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ...+.+.   ...|.+|+...+..++++..++.   |...++++++++.
T Consensus       182 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  230 (372)
T 1g29_1          182 LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK  230 (372)
T ss_dssp             HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence            1111111   12456677777777776433332   3345678887654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.09  E-value=9.5e-11  Score=88.32  Aligned_cols=109  Identities=20%  Similarity=0.358  Sum_probs=63.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCChh------hHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSEY------GTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~~------~~~~~~~l~~~--   65 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+.                ++.+...++.      ..++.+++..+  
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~  111 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFN---GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAV  111 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH---cCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHH
Confidence            478999999999999999999   76544433321                1111111111      11223332211  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ...+.....+.+.+.+...+-.   ..-...++.++.|++++++++...|++ ++||+|+
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l-LlLDEPt  171 (275)
T 3gfo_A          112 NMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV-LILDEPT  171 (275)
T ss_dssp             TSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE-EEEECTT
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE-EEEECcc
Confidence             1123333333444444432211   112345667799999999999999999 7899999

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=99.09  E-value=1.2e-09  Score=82.69  Aligned_cols=157  Identities=11%  Similarity=0.104  Sum_probs=86.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc-
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES-   83 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~-   83 (196)
                      .+++|++.|.+||||||+++.|.+.+.   +.++..          ..+.......              ..+..+... 
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~----------~~Pt~eE~~~--------------~yl~R~~~~L  140 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL----------TKPTETERGQ--------------WYFQRYVATF  140 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC----------CSCCHHHHTS--------------CTTHHHHTTC
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe----------CCcChHHHhc--------------hHHHHHHHhc
Confidence            478999999999999999999999884   222221          1111111110              011122222 


Q ss_pred             -CCCCcEEEeCCCCC------------HHHH-------HHHHHH-h-CCCCcEEEEeecChHHHHHHHhhccCCCCC---
Q 029287           84 -SDSKKFLIDGFPRS------------EENR-------AAFERI-M-GAEPDIVLFFDCPEEEMVNRVLNRNEGRVD---  138 (196)
Q Consensus        84 -~~~~~~iid~~~~~------------~~~~-------~~~~~~-~-~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~---  138 (196)
                       ..+..+|+|++..+            ..++       ..|.+. . ...|++.+||++|+++..+|+..|...-..   
T Consensus       141 P~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk  220 (304)
T 3czq_A          141 PTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWK  220 (304)
T ss_dssp             CCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGG
T ss_pred             ccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccccC
Confidence             24577888887643            1111       111111 1 347999999999999999999877321110   


Q ss_pred             CcHHHHHH--HHHHHHhchHhHHHHHH-hcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          139 DNIDTVRK--RLQVFKALNLPVINYYA-RRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       139 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      .+...+++  .+..|......++...+ +..+|.+|+++...-.-.+.++.++
T Consensus       221 ~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il  273 (304)
T 3czq_A          221 LSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHML  273 (304)
T ss_dssp             CCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHH
Confidence            12222332  23445555444444433 2468999999865433333333333

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.08  E-value=6.1e-10  Score=85.53  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=26.2

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      .+.|++|+|.|++||||||+++.|...++
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999999999998874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.06  E-value=4e-12  Score=97.12  Aligned_cols=109  Identities=19%  Similarity=0.320  Sum_probs=64.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCCC-H
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIVP-S   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~~-~   70 (196)
                      -+++|+|++||||||++++|.   |+...+.|.+              +++.+...++    +..++++++..+.... .
T Consensus        81 e~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~  157 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLF---RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN  157 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHT---TSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCH
T ss_pred             CEEEEECCCCchHHHHHHHHH---cCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCH
Confidence            478999999999999999999   5544333322              2332222221    1224677776654322 2


Q ss_pred             HHHHHHH-----HHHHhcC-C-CCcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLI-----QKEMESS-D-SKKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i-----~~~l~~~-~-~~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ......+     .+.+... . ....+-   ..++.++.|++++++++...|++ ++||+|+
T Consensus       158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i-LlLDEPt  218 (306)
T 3nh6_A          158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI-ILLDEAT  218 (306)
T ss_dssp             HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE-EEEECCS
T ss_pred             HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence            2221111     1111111 1 122221   23666799999999999999999 7799998

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.06  E-value=4.3e-09  Score=74.78  Aligned_cols=111  Identities=12%  Similarity=0.136  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHH-hcCChhhHHHHHHhhcCCCCCHHHHHHH----HHHHHhc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREI-ASNSEYGTTILNTIKEGKIVPSEVTVSL----IQKEMES   83 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~----i~~~l~~   83 (196)
                      .+++|.|++||||||+++.|++.++. .+++.+++..... ....+... .         .......+.    ...... 
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~~~~~~-   71 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWES-D---------ELLALTWKNITDLTVNFLL-   71 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGC-H---------HHHHHHHHHHHHHHHHHHH-
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccc-h---------hHHHHHHHHHHHHHHHHHh-
Confidence            57899999999999999999987754 6677655532110 00001000 0         000011111    111222 


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHH---hCCC-CcEEEEeecChHHHHHHHhhcc
Q 029287           84 SDSKKFLIDGFPRSEENRAAFERI---MGAE-PDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        84 ~~~~~~iid~~~~~~~~~~~~~~~---~~~~-p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                       ....++++++. .......+...   .... .-.+++|++|++.+.+|...|.
T Consensus        72 -~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~  123 (189)
T 2bdt_A           72 -AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (189)
T ss_dssp             -TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             -cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence             23457788753 33322222222   1222 2335889999999999998873

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.06  E-value=5.4e-11  Score=89.89  Aligned_cols=110  Identities=17%  Similarity=0.249  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH----------------HHHHhcCChh-------hHHHHHHhhcCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL----------------RREIASNSEY-------GTTILNTIKEGK   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~----------------~~~~~~~~~~-------~~~~~~~l~~~~   66 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+.                ++.+....+.       ..++.+++..+.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~  124 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILN---AYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA  124 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhh
Confidence            478999999999999999999   65544333221                1111111111       113445444321


Q ss_pred             C-------CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           67 I-------VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        67 ~-------~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      .       .........+.+.+...+-.   ..-+..++.++.|++.+++++...|++ ++||+|+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-LlLDEPts  190 (279)
T 2ihy_A          125 FKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQV-LILDEPAA  190 (279)
T ss_dssp             ---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE-EEEESTTT
T ss_pred             hhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCE-EEEeCCcc
Confidence            1       01111122333333322111   112445777899999999999999999 88999993

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.05  E-value=2.1e-10  Score=84.04  Aligned_cols=111  Identities=22%  Similarity=0.220  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------H-HHHhcCCh-----hhHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------R-REIASNSE-----YGTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~-~~~~~~~~-----~~~~~~~~l~~~-   65 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+.                 + +.+...++     ...+..+++..+ 
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~  107 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILG---LLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPM  107 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHT---TSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHH
Confidence            478999999999999999999   76544433321                 1 22221111     011122222111 


Q ss_pred             --CCCCHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           66 --KIVPSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        66 --~~~~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                        .........+.+.+.++.   ......-...++.++.|++.+++++...|++ ++||+|+.-
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l-llLDEPt~~  170 (224)
T 2pcj_A          108 LKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL-LFADEPTGN  170 (224)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE-EEEESTTTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCCCC
Confidence              011112122223333332   2211112345667799999999999999998 889999943

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.04  E-value=4.3e-09  Score=74.81  Aligned_cols=164  Identities=16%  Similarity=0.231  Sum_probs=80.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCC--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHH--h
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEM--E   82 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l--~   82 (196)
                      ....+++|.|+|||||||+++.|+..++.  .+++.+++.... ......+     ++.... .....+.+.+....  .
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~-----~~~~~~-~~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDP-----WLPQSH-QQNRMIMQIAADVAGRY   79 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCT-----TSSSHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccC-----Cccchh-hhhHHHHHHHHHHHHHH
Confidence            34578999999999999999999976533  356665554321 1000000     000000 00011111111111  0


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHH
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYY  162 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (196)
                      ...+..++++.+.... ....+.. .. .+-.++++.++.+++..|+..|.... ..+.+..+.....+.....     +
T Consensus        80 ~~~~~~~~~~~~~~~~-~l~~~~~-~~-~~~~~ls~~~~~~v~~~R~~~r~~~~-lld~~~~~~~~~~~~~l~~-----~  150 (191)
T 1zp6_A           80 AKEGYFVILDGVVRPD-WLPAFTA-LA-RPLHYIVLRTTAAEAIERCLDRGGDS-LSDPLVVADLHSQFADLGA-----F  150 (191)
T ss_dssp             HHTSCEEEECSCCCTT-TTHHHHT-TC-SCEEEEEEECCHHHHHHHHHTTCTTS-CCCHHHHHHHHHHTTCCGG-----G
T ss_pred             hccCCeEEEeccCcHH-HHHHHHh-cC-CCeEEEEecCCHHHHHHHHHhcCCCc-cCCHHHHHHHHHHHhccCc-----c
Confidence            1123446677654321 1111111 12 23346999999999999999883211 1133433332333322211     1


Q ss_pred             HhcCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287          163 ARRGKLYTINAV-GTVDEIFEQVRAVFAA  190 (196)
Q Consensus       163 ~~~~~~~~I~~~-~~~~~v~~~i~~~i~~  190 (196)
                         .. ++|+++ .+++++.++|.+.+..
T Consensus       151 ---~~-~~i~t~~~~~~~~~~~i~~~l~~  175 (191)
T 1zp6_A          151 ---EH-HVLPVSGKDTDQALQSAINALQS  175 (191)
T ss_dssp             ---GG-GEEECTTCCTTTTTTTTHHHHHH
T ss_pred             ---cc-cEEECCCCCHHHHHHHHHHHHHh
Confidence               12 245554 6888888887776643

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.04  E-value=1.2e-09  Score=81.43  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=31.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL   44 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~   44 (196)
                      ++|+|.||+||||||+++.|++.++..+++.|.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~   36 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ   36 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence            58899999999999999999999999999887753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.04  E-value=3.2e-11  Score=87.65  Aligned_cols=109  Identities=18%  Similarity=0.167  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH---------HHHhcCCh-----hhHHHHHHhhc-----CCCCCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR---------REIASNSE-----YGTTILNTIKE-----GKIVPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~---------~~~~~~~~-----~~~~~~~~l~~-----~~~~~~   70 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+..         +.+...++     ...++.+++..     +.... 
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~-  111 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTIS---TYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-  111 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH-
Confidence            378899999999999999999   765544443321         11111111     11122222211     11111 


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ......+.+.+..... .--...++.++.|++.++.++...|++ ++||+|+..
T Consensus       112 ~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~l-llLDEPts~  163 (214)
T 1sgw_A          112 KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEI-YVLDDPVVA  163 (214)
T ss_dssp             HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSE-EEEESTTTT
T ss_pred             HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCE-EEEECCCcC
Confidence            2222333333333221 112345677899999999999999999 779999954

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.02  E-value=1.5e-10  Score=86.41  Aligned_cols=109  Identities=18%  Similarity=0.175  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhcCC---CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKEGK---IV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~~~---~~   68 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+.             ++.+...++     ...++.+++....   ..
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~  118 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIIS---TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS  118 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCC
Confidence            488999999999999999999   76554444331             111111111     1112222221110   01


Q ss_pred             CHHH---HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 PSEV---TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~~---~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ....   ....+.+.+........-+..++.++.|++.+++++...|++ ++||+|+
T Consensus       119 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l-llLDEPt  174 (256)
T 1vpl_A          119 SSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL-AILDEPT  174 (256)
T ss_dssp             CHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred             ChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            1111   112222333221111112345777899999999999999999 7899999

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.02  E-value=7.7e-11  Score=87.57  Aligned_cols=109  Identities=21%  Similarity=0.307  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+              .++.+...++    ...++.+++..+.. ...
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~  112 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQ---RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV  112 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCH
Confidence            478999999999999999999   6654433322              1222222111    11245666654322 122


Q ss_pred             HHHHHHH-----HHHHhcCC--CCcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLI-----QKEMESSD--SKKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i-----~~~l~~~~--~~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ......+     .+.+....  ....+   ...++.++.|++.+++++...|++ ++||+|+
T Consensus       113 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l-llLDEPt  173 (247)
T 2ff7_A          113 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI-LIFDEAT  173 (247)
T ss_dssp             HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE-EEECCCC
T ss_pred             HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCCc
Confidence            2221111     11111110  01110   234666799999999999999999 7799999

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.02  E-value=9e-11  Score=86.86  Aligned_cols=109  Identities=24%  Similarity=0.320  Sum_probs=62.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCCh-----hhHHHHHHhhcCC--C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSE-----YGTTILNTIKEGK--I   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~-----~~~~~~~~l~~~~--~   67 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+.               ++.+...++     ...++.+++..+.  .
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~  109 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIA---GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR  109 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC
Confidence            478999999999999999999   76544433321               111111111     1123444443321  1


Q ss_pred             CCH---HHHHHHHHHHHh-cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           68 VPS---EVTVSLIQKEME-SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        68 ~~~---~~~~~~i~~~l~-~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ...   ......+.+.+. ......--...++.++.|++.+++++...|++ ++||+|+
T Consensus       110 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l-llLDEPt  167 (240)
T 1ji0_A          110 KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL-LMMDEPS  167 (240)
T ss_dssp             CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE-EEEECTT
T ss_pred             CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCCc
Confidence            111   111222233231 21111112456777899999999999999999 8899999

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.02  E-value=1.1e-10  Score=87.28  Aligned_cols=109  Identities=19%  Similarity=0.240  Sum_probs=63.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH---------------HHHHHhcCChh-----hHHHHHHhhcCC---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL---------------LRREIASNSEY-----GTTILNTIKEGK---   66 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~---------------~~~~~~~~~~~-----~~~~~~~l~~~~---   66 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+               .++.+...++.     ..++.+++..+.   
T Consensus        34 e~~~liG~nGsGKSTLlk~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  110 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVIT---GFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICP  110 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTST
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhh
Confidence            478999999999999999999   6654433322               12222222221     123444443221   


Q ss_pred             --C-----------CCHHHHHHHHHHHHhcCCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           67 --I-----------VPSEVTVSLIQKEMESSDSK---KFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        67 --~-----------~~~~~~~~~i~~~l~~~~~~---~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                        .           .........+.+.++..+-.   .--+..++.++.|++.+++++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l-llLDEPt  181 (257)
T 1g6h_A          111 GESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM-IVMDEPI  181 (257)
T ss_dssp             TSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE-EEEESTT
T ss_pred             ccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence              0           11111222233333322111   112445777899999999999999998 8899999

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.02  E-value=1.6e-11  Score=91.53  Aligned_cols=109  Identities=17%  Similarity=0.279  Sum_probs=64.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH-HHHhcCC-----hhhHHHHHHhhcCCC-------CCHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR-REIASNS-----EYGTTILNTIKEGKI-------VPSEVTVSL   76 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~-~~~~~~~-----~~~~~~~~~l~~~~~-------~~~~~~~~~   76 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+.. +.+...+     ....++.+++..+..       .........
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~  108 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLL---GIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV  108 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHT---TSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHH
Confidence            478999999999999999999   876666665521 1111111     111234444432210       111111222


Q ss_pred             HHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           77 IQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        77 i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+.+...+-..   .-...++.++.|++.+++++...|++ ++||+|+
T Consensus       109 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l-llLDEPt  156 (253)
T 2nq2_C          109 AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL-ILLDEPT  156 (253)
T ss_dssp             HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE-EEESSSS
T ss_pred             HHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            333333221111   12445777899999999999999999 8899999

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.00  E-value=1.1e-10  Score=87.72  Aligned_cols=109  Identities=26%  Similarity=0.331  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------HHHHhcCChh------hHHHHHHhhcCCC--CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------RREIASNSEY------GTTILNTIKEGKI--VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------~~~~~~~~~~------~~~~~~~l~~~~~--~~~   70 (196)
                      -+++|.|++||||||+++.|+   |+...+.|.+.           ++.+....+.      ..++.+++..+..  ...
T Consensus        34 e~~~liG~nGsGKSTLl~~i~---Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~  110 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVA---GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD  110 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTT
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCH
Confidence            478999999999999999999   76544433321           1111111111      1234444433211  111


Q ss_pred             ---HHHHHHHHHHHhcC--CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 ---EVTVSLIQKEMESS--DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ---~~~~~~i~~~l~~~--~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                         ......+.+.+...  .....-...++.++.|++.+++++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l-llLDEPt  166 (266)
T 2yz2_A          111 RDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI-LILDEPL  166 (266)
T ss_dssp             SCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred             HHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE-EEEcCcc
Confidence               11222233333322  111112345777899999999999999999 7899999

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.96  E-value=1.8e-10  Score=85.64  Aligned_cols=108  Identities=18%  Similarity=0.202  Sum_probs=63.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh-----hhHHHHHHhhcCCCCC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE-----YGTTILNTIKEGKIVP-   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~-----~~~~~~~~l~~~~~~~-   69 (196)
                      -+++|.||+||||||+++.|+   |+...+ |.+.              ++.+...++     ...++.+++..+.... 
T Consensus        27 e~~~liG~NGsGKSTLlk~l~---Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  102 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMA---GMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT  102 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT---TSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCC
Confidence            478999999999999999999   765444 4331              122221111     1223555554432111 


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-------EEEEeecCh
Q 029287           70 SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPD-------IVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~-------~~i~ld~~~  122 (196)
                      .......+.+.+........-...++.++.|++.+++++...|+       + ++||+|+
T Consensus       103 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l-llLDEPt  161 (249)
T 2qi9_C          103 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL-LLLDEPM  161 (249)
T ss_dssp             CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE-EEESSTT
T ss_pred             cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE-EEEECCc
Confidence            12222223333332211111244577789999999999888888       8 8899999

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.96  E-value=4.7e-09  Score=86.20  Aligned_cols=164  Identities=13%  Similarity=0.142  Sum_probs=67.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhC------CceechhHHHHHHHhcCChhhH-HHHHHhhcCCCCCHHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYG------LTHLSAGELLRREIASNSEYGT-TILNTIKEGKIVPSEVTVSLIQKE   80 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~------~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~i~~~   80 (196)
                      ...+++|+|++||||||++++|+..++      +.+++.+++.. .+........ ......        .. ...+.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~-~l~~~l~f~~~~r~~~~--------r~-i~~v~q~  437 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR-HLSSELGFSKAHRDVNV--------RR-IGFVASE  437 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH-HTTSSCCCSHHHHHHHH--------HH-HHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH-hhccccCCCHHHHHHHH--------HH-HHHHHHH
Confidence            347899999999999999999999873      33466655432 1111100000 000000        00 1111111


Q ss_pred             HhcCCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287           81 MESSDSKKFLIDGFPRSEENRAAFERIMGA-EPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVI  159 (196)
Q Consensus        81 l~~~~~~~~iid~~~~~~~~~~~~~~~~~~-~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (196)
                      +.. ....++..+.......+......+.. ..-++|||++|.+++.+|..+..  ........+.+   .+... .   
T Consensus       438 l~~-~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l--~~~~~~~~i~~---l~~~r-~---  507 (552)
T 3cr8_A          438 ITK-NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGL--YAKARAGLIPE---FTGVS-D---  507 (552)
T ss_dssp             HHH-TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------------C---
T ss_pred             HHh-cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccc--cccccHhHHHH---HHhcc-c---
Confidence            221 22344444332222222222222221 12377999999999999975321  00000011111   11100 1   


Q ss_pred             HHHHhcCcEEEEeCC-CCHhHHHHHHHHHHHhh
Q 029287          160 NYYARRGKLYTINAV-GTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       160 ~~~~~~~~~~~I~~~-~~~~~v~~~i~~~i~~~  191 (196)
                      .++.....-++||++ .+++++.++|...+...
T Consensus       508 ~~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~~  540 (552)
T 3cr8_A          508 PYEVPETPELAIDTTGLAIDEAVQQILLKLEHE  540 (552)
T ss_dssp             CCCCCSSCSEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCEEEECCCCCHHHHHHHHHHHHHhc
Confidence            011111222567765 68999999988877553

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.95  E-value=8.1e-09  Score=75.77  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=16.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHH-HHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIV-KNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~-~~~   33 (196)
                      .+++|+||+||||||++++|+ ..+
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            589999999999999999999 765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.95  E-value=4.7e-10  Score=93.12  Aligned_cols=168  Identities=13%  Similarity=0.175  Sum_probs=87.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-HHhcCC-----hhhHHHHHHhhc--CCCCCHHHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-EIASNS-----EYGTTILNTIKE--GKIVPSEVTVSLIQKEME   82 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-~~~~~~-----~~~~~~~~~l~~--~~~~~~~~~~~~i~~~l~   82 (196)
                      +++|.|++||||||+++.|+   |+...+.|..+.. .+...+     .......+.+..  ............+.+.+.
T Consensus       380 iv~iiG~NGsGKSTLlk~l~---Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~  456 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLA---GALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR  456 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHH---TSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHh---cCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence            68999999999999999999   8766655531100 000000     000011121111  111111222233344444


Q ss_pred             cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH------HHHHHhchH
Q 029287           83 SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR------LQVFKALNL  156 (196)
Q Consensus        83 ~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~------~~~~~~~~~  156 (196)
                      .......-+..++.++.|++++++++...|++ ++||+|+.-+.-.-...       -.+.+.+.      ...+.+|+.
T Consensus       457 l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~l-LlLDEPT~gLD~~~~~~-------i~~ll~~l~~~~g~tviivtHdl  528 (608)
T 3j16_B          457 IDDIIDQEVQHLSGGELQRVAIVLALGIPADI-YLIDEPSAYLDSEQRII-------CSKVIRRFILHNKKTAFIVEHDF  528 (608)
T ss_dssp             STTTSSSBSSSCCHHHHHHHHHHHHTTSCCSE-EEECCTTTTCCHHHHHH-------HHHHHHHHHHHHTCEEEEECSCH
T ss_pred             ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEECCCCCCCHHHHHH-------HHHHHHHHHHhCCCEEEEEeCCH
Confidence            33222222455677799999999999999999 77999993221111110       00111110      113456777


Q ss_pred             hHHHHHHhcCcEEE-----EeCCCCHhHHHHHHHHHHH
Q 029287          157 PVINYYARRGKLYT-----INAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       157 ~~~~~~~~~~~~~~-----I~~~~~~~~v~~~i~~~i~  189 (196)
                      ..+..++++..++.     +.+.+++++++......+.
T Consensus       529 ~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~  566 (608)
T 3j16_B          529 IMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLK  566 (608)
T ss_dssp             HHHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHH
Confidence            77777776433322     2245678888766443333

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.95  E-value=5.9e-11  Score=88.93  Aligned_cols=107  Identities=18%  Similarity=0.189  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-----------Hh-cCChh---hHHHHHHhhcCC---CCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-----------IA-SNSEY---GTTILNTIKEGK---IVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-----------~~-~~~~~---~~~~~~~l~~~~---~~~~~   71 (196)
                      -+++|.|++||||||+++.|+   |+. .+.|.+....           +. ..++.   ..++.+++....   .....
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~---Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~  106 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAIS---GLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD  106 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHT---TSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHH
T ss_pred             EEEEEECCCCCCHHHHHHHHh---CCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHH
Confidence            378999999999999999999   876 6555442111           11 11111   112222221110   11111


Q ss_pred             HHHHHHHHHHhcC-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           72 VTVSLIQKEMESS-DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        72 ~~~~~i~~~l~~~-~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       ....+.+.+... ....--...++.++.|++.+++++...|++ ++||+|+
T Consensus       107 -~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-llLDEPt  156 (263)
T 2pjz_A          107 -LFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI-VGLDEPF  156 (263)
T ss_dssp             -HHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE-EEEECTT
T ss_pred             -HHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEECCc
Confidence             122222333322 111111345667799999999999999998 8899999

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.94  E-value=2.9e-08  Score=80.33  Aligned_cols=145  Identities=12%  Similarity=0.200  Sum_probs=75.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCC-----ceechhHHHHHHHhcCChhhHHHHHHhhcCCC----CCHHH---HH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL-----THLSAGELLRREIASNSEYGTTILNTIKEGKI----VPSEV---TV   74 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~---~~   74 (196)
                      ..+++|++.|.+||||||+++.|++.++.     ..++.+++.++. .......    +.......    .....   ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~-~g~~~~~----~ifd~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSF----EFFLPDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCG----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh-ccCCCcc----cccCCCCHHHHHHHHHHHHHHH
Confidence            34578999999999999999999998753     344555543332 2110000    00000000    00001   11


Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEee---cChHHHHHHHhhccCCCCC---Cc----HHHH
Q 029287           75 SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFD---CPEEEMVNRVLNRNEGRVD---DN----IDTV  144 (196)
Q Consensus        75 ~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld---~~~~~~~~Rl~~r~~~~~~---~~----~~~~  144 (196)
                      ......+....+..+|+|........+..+..........+++++   .+++.+.+|+..+...+..   .+    .+.+
T Consensus       112 ~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~~  191 (469)
T 1bif_A          112 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDF  191 (469)
T ss_dssp             HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHHH
Confidence            122444444456678899877776666555333211112346676   4578888887754322222   11    2445


Q ss_pred             HHHHHHHHhchH
Q 029287          145 RKRLQVFKALNL  156 (196)
Q Consensus       145 ~~~~~~~~~~~~  156 (196)
                      .+|...|.....
T Consensus       192 ~~R~~~y~~~ye  203 (469)
T 1bif_A          192 MRRIECYENSYE  203 (469)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHhccEeE
Confidence            556666665543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.94  E-value=5e-10  Score=92.93  Aligned_cols=109  Identities=21%  Similarity=0.283  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCC--CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGK--IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~--~~~   69 (196)
                      -+++|.||+||||||+++.|.   |....+.|.+              .++.+...++    ...++++++..+.  ...
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~  446 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFT---RFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYT  446 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCC
Confidence            478999999999999999999   5443333322              1121221111    1235777776653  222


Q ss_pred             HHHHHHHHH-----HHHhcC--CCCcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQ-----KEMESS--DSKKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~-----~~l~~~--~~~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ++...+.+.     +.+...  +.+..+   ...++.++.|++.+++++..+|++ ++||+|+
T Consensus       447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i-lllDEpt  508 (582)
T 3b5x_A          447 REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV-LILDEAT  508 (582)
T ss_pred             HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE-EEEECcc
Confidence            222222111     111111  111111   134667799999999999999999 7799998

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.93  E-value=8.6e-09  Score=74.48  Aligned_cols=28  Identities=29%  Similarity=0.466  Sum_probs=24.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ....+++|.|++||||||+++.|+..+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3457999999999999999999998774

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.93  E-value=2.8e-10  Score=85.67  Aligned_cols=109  Identities=19%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~   70 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+              .++.+...++    ...++.+++..+... ..
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~  122 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQ---NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT  122 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCCh
Confidence            478999999999999999999   6554433322              1222222211    112456666543221 11


Q ss_pred             -HHHHH-----HHHHHHhcCC--CCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 -EVTVS-----LIQKEMESSD--SKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 -~~~~~-----~i~~~l~~~~--~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                       .....     .+.+.+...+  ....   -...++.++.|++.+++++...|++ ++||+|+
T Consensus       123 ~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l-llLDEPt  184 (271)
T 2ixe_A          123 MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL-LILDNAT  184 (271)
T ss_dssp             HHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred             HHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence             11111     1122222110  0111   1334666799999999999999999 7899999

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.92  E-value=2.3e-10  Score=84.84  Aligned_cols=108  Identities=20%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH--------------HHhcCCh----hhHHHHHHhhcC-CC-CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR--------------EIASNSE----YGTTILNTIKEG-KI-VP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~--------------~~~~~~~----~~~~~~~~l~~~-~~-~~   69 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+...              .+...++    ...++.+++..+ .. ..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~  105 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLE---RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT  105 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHT---TSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSC
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCC
Confidence            588999999999999999999   6655444443211              1111111    011456666544 11 22


Q ss_pred             HHHHHHHHHHHHhcCCC--------CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQKEMESSDS--------KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~--------~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .... ..+.+.+.....        ...+   ...++.++.|++.+++++...|++ ++||+|+
T Consensus       106 ~~~~-~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l-llLDEPt  167 (243)
T 1mv5_A          106 DEDL-WQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI-LMLDEAT  167 (243)
T ss_dssp             HHHH-HHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE-EEEECCS
T ss_pred             HHHH-HHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence            2222 222222222111        1111   234666799999999999999998 7799999

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.90  E-value=1.9e-10  Score=90.56  Aligned_cols=109  Identities=18%  Similarity=0.254  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCChh----hHHHHHHhhcCCCCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSEY----GTTILNTIKEGKIVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~~----~~~~~~~l~~~~~~~~~   71 (196)
                      -+++|.||+||||||++++|+   |+.. +.|.+.              ++.+....+.    ..++.+++.........
T Consensus        48 e~~~llGpsGsGKSTLLr~ia---Gl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~  123 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFL---RLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ  123 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH---TCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHH
T ss_pred             CEEEEECCCCChHHHHHHHHh---CCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHH
Confidence            478999999999999999999   7665 444331              2222221111    11344555422222332


Q ss_pred             HHHHHHHHHHhc------CCC--CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           72 VTVSLIQKEMES------SDS--KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        72 ~~~~~i~~~l~~------~~~--~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      .+.+ +.+.+..      ...  ...+.+   .++.++.|++++++++...|++ ++||+|+..
T Consensus       124 ~v~~-~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l-LLLDEPts~  185 (390)
T 3gd7_A          124 EIWK-VADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI-LLLDEPSAH  185 (390)
T ss_dssp             HHHH-HHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE-EEEESHHHH
T ss_pred             HHHH-HHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE-EEEeCCccC
Confidence            2222 1222211      111  112111   1666799999999999999999 779999943

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.87  E-value=8.8e-10  Score=80.96  Aligned_cols=108  Identities=20%  Similarity=0.219  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-Hhc-----CChhhHHHHHHhhcCCCCCHHHHHHH-----HH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IAS-----NSEYGTTILNTIKEGKIVPSEVTVSL-----IQ   78 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~-----i~   78 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+.... +..     ..... ++.+++..+...........     +.
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~  110 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIM---GELEPSEGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLE  110 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCcCCccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcH
Confidence            478999999999999999999   76655554432110 000     01112 45566654432222111111     11


Q ss_pred             HHHhcCCC--CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           79 KEMESSDS--KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        79 ~~l~~~~~--~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+.....  ...+   ...++.++.|++.+++++...|++ ++||+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l-llLDEPt  158 (229)
T 2pze_A          111 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL-YLLDSPF  158 (229)
T ss_dssp             HHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred             HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE-EEEECcc
Confidence            11211110  0011   235667799999999999999999 7899999

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.86  E-value=3.6e-09  Score=81.05  Aligned_cols=28  Identities=21%  Similarity=0.321  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ..+.+++|+|++||||||+++.|+..++
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4568999999999999999999998765

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.85  E-value=3.8e-10  Score=83.36  Aligned_cols=108  Identities=17%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcCCh----hhHHHHHHhhcCCCCCHHHHHHHHHHH----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IASNSE----YGTTILNTIKEGKIVPSEVTVSLIQKE----   80 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~i~~~----   80 (196)
                      -+++|.||+||||||+++.|+   |+...+.|.+.... +...++    ...++.+++..+....... ...+.+.    
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~l~  107 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALL---AEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPY-YRSVIQACALL  107 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTH-HHHHHHHTTCH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHH-HHHHHHHHhhH
Confidence            488999999999999999999   87766655542110 000000    1223455554432222111 1111121    


Q ss_pred             --HhcCCC--CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           81 --MESSDS--KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        81 --l~~~~~--~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                        +...+.  ...+   ...++.++.|++.+++++...|++ ++||+|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-llLDEPt  155 (237)
T 2cbz_A          108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI-YLFDDPL  155 (237)
T ss_dssp             HHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE-EEEESTT
T ss_pred             HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence              111110  0111   234667799999999999999999 7799999

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.82  E-value=1.3e-08  Score=84.55  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=27.0

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++++++++...|++ ++||+|+
T Consensus       219 ~~~LSgGe~Qrv~iAraL~~~p~l-lllDEPt  249 (608)
T 3j16_B          219 IEKLSGGELQRFAIGMSCVQEADV-YMFDEPS  249 (608)
T ss_dssp             TTTCCHHHHHHHHHHHHHHSCCSE-EEEECTT
T ss_pred             hHHCCHHHHHHHHHHHHHHhCCCE-EEEECcc
Confidence            445667799999999999999998 7899999

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.82  E-value=1.8e-09  Score=80.35  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=22.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           94 FPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ++.++.|++.+++++...|++ ++||+|+
T Consensus       144 LSgGqkQrv~iAraL~~~p~l-llLDEPt  171 (250)
T 2d2e_A          144 FSGGEKKRNEILQLLVLEPTY-AVLDETD  171 (250)
T ss_dssp             ----HHHHHHHHHHHHHCCSE-EEEECGG
T ss_pred             CCHHHHHHHHHHHHHHcCCCE-EEEeCCC
Confidence            788899999999999999998 7899999

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.81  E-value=2.5e-09  Score=82.23  Aligned_cols=35  Identities=14%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL   43 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~   43 (196)
                      +.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            35899999999999999999999999888887654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.78  E-value=3e-09  Score=80.70  Aligned_cols=107  Identities=20%  Similarity=0.213  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcC-----ChhhHHHHHHhhcCCCCCHHHHHHH-----HH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IASN-----SEYGTTILNTIKEGKIVPSEVTVSL-----IQ   78 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~-----i~   78 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+.... +...     .... ++.+++. +...........     +.
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~-tv~enl~-~~~~~~~~~~~~~~~~~l~  139 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIM---GELEPSEGKIKHSGRISFCSQNSWIMPG-TIKENII-GVSYDEYRYRSVIKACQLE  139 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHT---TSSCEEEEEEECCSCEEEECSSCCCCSS-BHHHHHH-TTCCCHHHHHHHHHHTTCH
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEEEEEeCCCccCcc-cHHHHhh-CcccchHHHHHHHHHhChH
Confidence            478999999999999999999   87666555542110 0000     0112 4555555 322222111111     11


Q ss_pred             HHHhcCCC--CcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           79 KEMESSDS--KKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        79 ~~l~~~~~--~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+.....  ...   -...++.++.|++.+++++...|++ ++||+|+
T Consensus       140 ~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l-llLDEPt  187 (290)
T 2bbs_A          140 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL-YLLDSPF  187 (290)
T ss_dssp             HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred             HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE-EEEECCc
Confidence            11211110  000   1345777899999999999999999 7899999

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.78  E-value=4.3e-09  Score=74.37  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+++|.|||||||||+++.|...+
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            588999999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.77  E-value=1.2e-09  Score=81.71  Aligned_cols=108  Identities=23%  Similarity=0.351  Sum_probs=60.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -+++|.||+||||||+++.|+   |+... .|.+              .++.+...++    ...++.+++..+.. ...
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~---Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~  122 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLY---RFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD  122 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---ccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCH
Confidence            488999999999999999999   65321 2222              1111111111    01145555554321 122


Q ss_pred             HHHHHHH-----HHHHh-cCCC-CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLI-----QKEME-SSDS-KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i-----~~~l~-~~~~-~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ......+     .+.+. .... ...+   ...++.++.|++.+++++...|++ ++||+|+
T Consensus       123 ~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l-llLDEPt  183 (260)
T 2ghi_A          123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI-VIFDEAT  183 (260)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSE-EEEECCC
T ss_pred             HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCE-EEEECcc
Confidence            2111111     11111 1010 1111   235667799999999999999999 7799999

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.77  E-value=1.3e-07  Score=68.77  Aligned_cols=162  Identities=14%  Similarity=0.139  Sum_probs=82.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCC--ceech--hHH-HH----HHHhcCChhhHHHHHHhhcCCC---------CCH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGL--THLSA--GEL-LR----REIASNSEYGTTILNTIKEGKI---------VPS   70 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~--~~~-~~----~~~~~~~~~~~~~~~~l~~~~~---------~~~   70 (196)
                      ..+++|.||+||||||+++.|...+..  ...+.  ... .+    +...........+......+..         ...
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg   95 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   95 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCC
Confidence            468899999999999999999976531  11111  000 00    0001111111122222221110         000


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeec-ChHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029287           71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDC-PEEEMVNRVLNRNEGRVDDNIDTVRKRLQ  149 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~-~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~  149 (196)
                      . ....+.+.+..  +..+++|   ........+...+. . ..+|++-. +.+.+.+|+..|    ..++.+.+.+|+.
T Consensus        96 ~-~~~~v~~~l~~--G~illLD---LD~~~~~~i~~~l~-~-~~tI~i~th~~~~l~~Rl~~r----G~~~~e~i~~rl~  163 (219)
T 1s96_A           96 T-SREAIEQVLAT--GVDVFLD---IDWQGAQQIRQKMP-H-ARSIFILPPSKIELDRRLRGR----GQDSEEVIAKRMA  163 (219)
T ss_dssp             E-EHHHHHHHHTT--TCEEEEE---CCHHHHHHHHHHCT-T-CEEEEEECSSHHHHHHHHHTT----SCSCHHHHHHHHH
T ss_pred             C-CHHHHHHHHhc--CCeEEEE---ECHHHHHHHHHHcc-C-CEEEEEECCCHHHHHHHHHHc----CCCCHHHHHHHHH
Confidence            0 01234445553  5778898   33333344444433 2 45565655 558888899776    2456777777664


Q ss_pred             HHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          150 VFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      .....    .. +......+ |.+ .+.++..+++..++.
T Consensus       164 ~a~~e----~~-~~~~~d~~-i~N-d~l~~a~~~l~~ii~  196 (219)
T 1s96_A          164 QAVAE----MS-HYAEYDYL-IVN-DDFDTALTDLKTIIR  196 (219)
T ss_dssp             HHHHH----HT-TGGGSSEE-EEC-SSHHHHHHHHHHHHH
T ss_pred             HHHHH----Hh-hccCCCEE-EEC-cCHHHHHHHHHHHHH
Confidence            33211    11 12233444 444 488888888887774

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.77  E-value=1.1e-07  Score=68.06  Aligned_cols=71  Identities=15%  Similarity=0.184  Sum_probs=40.4

Q ss_pred             CCcEEEEeecC-hHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          111 EPDIVLFFDCP-EEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       111 ~p~~~i~ld~~-~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      .|.+ ++|+.| ...+.+|+..+    ..++.+.+.+++........ ... .......+++ ++ +.++..+++.+++.
T Consensus       116 ~~~~-~~l~~p~~~ilde~~~~~----d~~~e~~i~~~l~~~~~~~~-~a~-~~~~~D~iiv-nd-~le~a~~~l~~ii~  186 (198)
T 1lvg_A          116 CPIY-IFVQPPSLDVLEQRLRLR----NTETEESLAKRLAAARTDME-SSK-EPGLFDLVII-ND-DLDKAYATLKQALS  186 (198)
T ss_dssp             CCEE-EEEECSCHHHHHHHHHHH----TCSCHHHHHHHHHHHHHHTT-GGG-STTTCSEEEE-CS-SHHHHHHHHHHHTH
T ss_pred             CcEE-EEEeCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHH-Hhh-ccCCceEEEE-CC-CHHHHHHHHHHHHH
Confidence            3444 677776 47778888887    34466777776554432211 100 0122344333 33 68888888887765


Q ss_pred             h
Q 029287          190 A  190 (196)
Q Consensus       190 ~  190 (196)
                      .
T Consensus       187 ~  187 (198)
T 1lvg_A          187 E  187 (198)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.76  E-value=5.3e-08  Score=69.58  Aligned_cols=26  Identities=12%  Similarity=0.231  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ..+|+|.||+||||||+++.|.+.+.
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            36888999999999999999998874

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.75  E-value=4.2e-09  Score=79.06  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=26.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           93 GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .++.++.|++.+++++...|++ ++||+|+
T Consensus       164 ~LSgGq~QRv~iAraL~~~p~l-LlLDEPt  192 (267)
T 2zu0_C          164 GFSGGEKKRNDILQMAVLEPEL-CILDESD  192 (267)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCSE-EEEESTT
T ss_pred             CCCHHHHHHHHHHHHHHhCCCE-EEEeCCC
Confidence            3777799999999999999999 7899999

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.74  E-value=1.5e-09  Score=89.12  Aligned_cols=106  Identities=17%  Similarity=0.258  Sum_probs=59.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH--HhcCC-----hhhHHHHHHhhc--CCCC-CHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE--IASNS-----EYGTTILNTIKE--GKIV-PSEVTVSLIQK   79 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~--~~~~~-----~~~~~~~~~l~~--~~~~-~~~~~~~~i~~   79 (196)
                      -+++|.|++||||||++++|+   |....+.|.+....  +...+     .....+.+++..  .... ....   .+.+
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~---~~~~  368 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILV---GEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSW---FFEE  368 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT---TSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSH---HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHH---HHHH
Confidence            478999999999999999999   77666655542110  00000     001112222211  0100 1111   1122


Q ss_pred             HHhcCC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           80 EMESSD---SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        80 ~l~~~~---~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+....   ....-+..++.++.|++++++++...|++ ++||+|+
T Consensus       369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l-LlLDEPT  413 (538)
T 3ozx_A          369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL-YVLDQPS  413 (538)
T ss_dssp             TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred             HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            222111   11112344666799999999999999999 7799999

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.74  E-value=3.2e-09  Score=88.34  Aligned_cols=105  Identities=24%  Similarity=0.356  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -+++|.||+||||||+++.|.   |....+.|.+              .++.+...++    ...++++++..+.. ..+
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~  458 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLM---RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD  458 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHT---TSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCT
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCH
Confidence            488999999999999999999   5544333322              2333332222    12256677765533 222


Q ss_pred             HHHHHHHHHHHhcCCC-----------CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQKEMESSDS-----------KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~-----------~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.    +.+.+.....           +..+   ...++.++.|++.+++++..+|++ ++||+|+
T Consensus       459 ~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i-lllDEpt  519 (598)
T 3qf4_B          459 EE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI-LILDEAT  519 (598)
T ss_dssp             TH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE-EEECCCC
T ss_pred             HH----HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence            22    2222221111           1111   123666799999999999999999 7799998

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.73  E-value=1.1e-09  Score=90.89  Aligned_cols=109  Identities=20%  Similarity=0.275  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~   70 (196)
                      -+++|.||+||||||+++.|.   |....+.|.+              .++.+...++    ...++++++..+... .+
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~  444 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIP---RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD  444 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTT---TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCH
T ss_pred             CEEEEECCCCChHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCH
Confidence            488999999999999999999   5544333322              2222222221    122567777655432 23


Q ss_pred             HHHHHHHH-----HHHhcC-CC-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQ-----KEMESS-DS-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~-----~~l~~~-~~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +...+...     +.+... .+ +..+-   ..++.+++|++.+++++..+|++ ++||+|+
T Consensus       445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i-lllDEpt  505 (578)
T 4a82_A          445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI-LILDEAT  505 (578)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE-EEEESTT
T ss_pred             HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE-EEEECcc
Confidence            22222211     111111 11 12211   23666799999999999999999 7799998

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.72  E-value=4.1e-09  Score=87.48  Aligned_cols=109  Identities=24%  Similarity=0.323  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~   70 (196)
                      -+++|.||+||||||+++.|.   |....+.|.+              .++.+...++    ...++++++..+... .+
T Consensus       370 e~~~ivG~sGsGKSTll~~l~---g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~  446 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIP---RLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD  446 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTT---TSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCH
Confidence            478999999999999999999   5443333322              2333332222    122577777765432 33


Q ss_pred             HHHHHHH-----HHHHhcC-CC-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLI-----QKEMESS-DS-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i-----~~~l~~~-~~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ....+..     .+.+... .+ +..+-   ..++.++.|++.+++++..+|++ ++||+|+
T Consensus       447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~i-lllDEpt  507 (587)
T 3qf4_A          447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV-LILDDCT  507 (587)
T ss_dssp             HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSE-EEEESCC
T ss_pred             HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence            3222221     1122111 11 22221   23566799999999999999999 7799998

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.72  E-value=2.2e-09  Score=89.03  Aligned_cols=109  Identities=21%  Similarity=0.290  Sum_probs=63.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCC--CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGK--IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~--~~~   69 (196)
                      -+++|.||+||||||+++.|.   |....+.|.+              .++.+...++    ...++++++..+.  ...
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~---g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~  446 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLIT---RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYS  446 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHT---TTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHh---hccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCC
Confidence            478999999999999999999   5443332222              2222222211    1125677776553  223


Q ss_pred             HHHHHHHHH-----HHHhcCC-C-CcEE---EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           70 SEVTVSLIQ-----KEMESSD-S-KKFL---IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        70 ~~~~~~~i~-----~~l~~~~-~-~~~i---id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ++...+.+.     +.+...+ + +..+   ...++.++.|++.+++++..+|++ ++||+|+
T Consensus       447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~i-lllDEpt  508 (582)
T 3b60_A          447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI-LILDEAT  508 (582)
T ss_dssp             HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE-EEEETTT
T ss_pred             HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE-EEEECcc
Confidence            322222111     1111100 1 1111   124666799999999999999998 7799998

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.72  E-value=1.6e-08  Score=82.95  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=27.3

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++++++++...|++ ++||+|+
T Consensus       136 ~~~LSgGe~Qrv~iA~aL~~~p~i-lllDEPt  166 (538)
T 3ozx_A          136 ANILSGGGLQRLLVAASLLREADV-YIFDQPS  166 (538)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCE-EEEECCc
Confidence            445677799999999999999999 7799999

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.72  E-value=4.8e-08  Score=79.07  Aligned_cols=163  Identities=13%  Similarity=0.095  Sum_probs=83.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCC---ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGL---THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES   83 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~   83 (196)
                      +.+++|++.|.+||||+|+.+.|.+.++-   .+...+          .|......      .....     .....+ .
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~----------~Pt~~E~~------~~yl~-----R~~~~l-P   98 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFL----------RPSDEELE------RPPQW-----RFWRRL-P   98 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECS----------SCCHHHHT------SCTTH-----HHHHHC-C
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhcc------CChhh-----hHHHhC-C
Confidence            45789999999999999999999999842   222210          01110000      00000     011111 1


Q ss_pred             CCCCcEEEeCCCCC------------HH-------HHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCC----
Q 029287           84 SDSKKFLIDGFPRS------------EE-------NRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD----  138 (196)
Q Consensus        84 ~~~~~~iid~~~~~------------~~-------~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~----  138 (196)
                      ..+..+|.|++.-+            ..       +...|...  -...|++.+||++|+++..+|+..|..+-..    
T Consensus        99 ~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~  178 (500)
T 3czp_A           99 PKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKL  178 (500)
T ss_dssp             CTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------------
T ss_pred             CCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCC
Confidence            23455667765321            11       11122222  2456889999999999999999988421000    


Q ss_pred             --CcHHHHHHHHHHHHhchHhHHHHHHh-cCcEEEEeCCC---CHhHHHHHHHHHHHhhh
Q 029287          139 --DNIDTVRKRLQVFKALNLPVINYYAR-RGKLYTINAVG---TVDEIFEQVRAVFAALK  192 (196)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~~~~---~~~~v~~~i~~~i~~~~  192 (196)
                        .+.... +....|......++...+. .++|++|+++.   ....+.+.|.+.|...+
T Consensus       179 s~~D~~~~-~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l  237 (500)
T 3czp_A          179 SPLDWKQS-EVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAAL  237 (500)
T ss_dssp             CSSCTTSH-HHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHH-HhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHH
Confidence              011111 1223444443444443333 35899999986   23455666666665544

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.71  E-value=1.5e-08  Score=91.15  Aligned_cols=109  Identities=24%  Similarity=0.393  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhH--------------HHHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE--------------LLRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~--------------~~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -.++|+|++||||||+++.|...|   .++.|.              .+|+.+...++    ...++++++..|.. ..+
T Consensus       445 ~~vaivG~sGsGKSTll~ll~~~~---~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~  521 (1321)
T 4f4c_A          445 QTVALVGSSGCGKSTIISLLLRYY---DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITR  521 (1321)
T ss_dssp             CEEEEEECSSSCHHHHHHHHTTSS---CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCH
T ss_pred             cEEEEEecCCCcHHHHHHHhcccc---ccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchH
Confidence            478999999999999999999554   222222              23444444333    23457888887765 344


Q ss_pred             HHHHHHHHH-----HHh-cCC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQK-----EME-SSD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~~-----~l~-~~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +.+.+.+..     .+. .++ .+..|-+   .++.+++|++++++++..+|++ ++||+|+
T Consensus       522 ~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~I-liLDE~t  582 (1321)
T 4f4c_A          522 EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI-LLLDEAT  582 (1321)
T ss_dssp             HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSE-EEEESTT
T ss_pred             HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCE-EEEeccc
Confidence            433333222     122 122 2444433   2666799999999999999999 7799987

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.70  E-value=3.5e-09  Score=95.08  Aligned_cols=112  Identities=22%  Similarity=0.290  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh----CCceechhH-------HHHHHHhcCCh----hhHHHHHHhhcCC---CCCHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY----GLTHLSAGE-------LLRREIASNSE----YGTTILNTIKEGK---IVPSE   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~----~~~~i~~~~-------~~~~~~~~~~~----~~~~~~~~l~~~~---~~~~~   71 (196)
                      -.++|+|++||||||+++.|..-|    |-..++.-+       -+|+.+...++    +..++++++..|.   ...++
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ 1185 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA 1185 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHH
T ss_pred             CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHH
Confidence            478999999999999999999544    222222111       13333333332    2335788876552   23344


Q ss_pred             HHHHHHH-----HHHhc-CC-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           72 VTVSLIQ-----KEMES-SD-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        72 ~~~~~i~-----~~l~~-~~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+.+.+.     +.+.. ++ .+..|-+   .++.+++|++.+++++..+|.+ ++||+++
T Consensus      1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~I-LiLDEaT 1245 (1321)
T 4f4c_A         1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKI-LLLDEAT 1245 (1321)
T ss_dssp             HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSE-EEEESCC
T ss_pred             HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCE-EEEeCcc
Confidence            3333222     11111 12 2344433   3667799999999999999998 7799987

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.68  E-value=5.5e-08  Score=78.70  Aligned_cols=162  Identities=7%  Similarity=0.080  Sum_probs=90.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES   83 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~   83 (196)
                      +.+++|++.|.+||||+|+.+.|.+.++   +.+....          .|.....      +.        ..+.++...
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~--------~yl~R~~~~  353 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQ--------PYLWRFWRH  353 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TS--------CTTHHHHTT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cc--------hHHHHHHHh
Confidence            3578999999999999999999998873   3222210          1111111      00        011122222


Q ss_pred             --CCCCcEEEeCCCCC------------HHHH-------HHHHHH--hCCCCcEEEEeecChHHHHHHHhhccCCCCC--
Q 029287           84 --SDSKKFLIDGFPRS------------EENR-------AAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVD--  138 (196)
Q Consensus        84 --~~~~~~iid~~~~~------------~~~~-------~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~--  138 (196)
                        ..+..+|.|++.-+            ..++       ..|...  -...|.+.+||++|+++..+|+..|...-..  
T Consensus       354 lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~W  433 (500)
T 3czp_A          354 IPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRY  433 (500)
T ss_dssp             CCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTS
T ss_pred             CCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence              24566788886533            1211       122111  1346889999999999999999988421110  


Q ss_pred             -CcHHHHH--HHHHHHHhchHhHHHHHHh-cCcEEEEeCCC---CHhHHHHHHHHHHHhhh
Q 029287          139 -DNIDTVR--KRLQVFKALNLPVINYYAR-RGKLYTINAVG---TVDEIFEQVRAVFAALK  192 (196)
Q Consensus       139 -~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~I~~~~---~~~~v~~~i~~~i~~~~  192 (196)
                       .+...++  +....|......++...+. .++|.+|+++.   ..-.+.+.|.+.|...+
T Consensus       434 k~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~l  494 (500)
T 3czp_A          434 KITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAY  494 (500)
T ss_dssp             CCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHHH
Confidence             0111111  1233455555555554444 45899999986   23455566666665544

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.67  E-value=3.5e-09  Score=87.99  Aligned_cols=109  Identities=18%  Similarity=0.246  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-HHhcCCh-----hhHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-EIASNSE-----YGTTILNTIKEG--KIVPSEVTVSLIQKEM   81 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~~~~l~~~--~~~~~~~~~~~i~~~l   81 (196)
                      -+++|.||+||||||+++.|+   |....+.|.+... .+...++     ...++.+++...  ...........+.+.+
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~  459 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLA---GVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL  459 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH---TSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence            478999999999999999999   7766555554210 0000000     011112222110  0000011122223333


Q ss_pred             hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .......--+..++.++.|++.+++++...|++ ++||+|+
T Consensus       460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l-LlLDEPt  499 (607)
T 3bk7_A          460 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADI-YLLDEPS  499 (607)
T ss_dssp             TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE-EEEECTT
T ss_pred             CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCc
Confidence            332221112445777899999999999999999 7899999

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.62  E-value=2.5e-08  Score=81.95  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=27.1

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       156 ~~~LSgGekQRv~iAraL~~~P~l-LlLDEPT  186 (538)
T 1yqt_A          156 IQHLSGGELQRVAIAAALLRNATF-YFFDEPS  186 (538)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSE-EEEESTT
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence            445667799999999999999999 8899999

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.61  E-value=2.3e-08  Score=83.10  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=27.0

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++++++++...|++ ++||+|+
T Consensus       226 ~~~LSGGekQRvaIAraL~~~P~l-LlLDEPT  256 (607)
T 3bk7_A          226 LHQLSGGELQRVAIAAALLRKAHF-YFFDEPS  256 (607)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSE-EEEECTT
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence            344667799999999999999999 8899999

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.60  E-value=9.8e-09  Score=78.72  Aligned_cols=28  Identities=29%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ...+.+++|.|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            3456899999999999999999999765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.57  E-value=5.1e-09  Score=85.99  Aligned_cols=106  Identities=17%  Similarity=0.233  Sum_probs=58.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH-HHhcCCh-----hhHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR-EIASNSE-----YGTTILNTIKEG--KIVPSEVTVSLIQKEM   81 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~~~~l~~~--~~~~~~~~~~~i~~~l   81 (196)
                      -+++|.|++||||||+++.|+   |....+.|.+... .+...++     ....+.+.+...  ......   ..+.+.+
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~---~~~~~~l  386 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLA---GVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSN---FYKTELL  386 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH---TSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCH---HHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHH---HHHHHHH
Confidence            488999999999999999999   7665555544210 0000000     000111111100  000001   1122222


Q ss_pred             hcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           82 ESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        82 ~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ....-..   .-+..++.++.|++.+++++...|++ ++||+|+
T Consensus       387 ~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l-LlLDEPt  429 (538)
T 1yqt_A          387 KPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI-YLLDEPS  429 (538)
T ss_dssp             TTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE-EEEECTT
T ss_pred             HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE-EEEeCCc
Confidence            2211111   11334666799999999999999999 7899999

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.48  E-value=1.6e-07  Score=69.19  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=34.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE   47 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~   47 (196)
                      |++|+|+|++||||||+++.|.+.+|+.++..++.+++.
T Consensus         1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~   39 (241)
T 1dek_A            1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA   39 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHH
Confidence            378999999999999999999998999999888776554

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.47  E-value=7.8e-08  Score=73.72  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL   43 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~   43 (196)
                      +.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            46899999999999999999999999888887654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.47  E-value=9.9e-08  Score=73.61  Aligned_cols=35  Identities=23%  Similarity=0.489  Sum_probs=31.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL   43 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~   43 (196)
                      +++|+|.||+||||||++..|++.++..+++.|.+
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            36899999999999999999999999888888765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.45  E-value=1.3e-07  Score=71.88  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=31.7

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE   42 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~   42 (196)
                      .+.+.+|+|.||+||||||++..|++.++..+++.|.
T Consensus         7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            3456789999999999999999999999988777653

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=98.43  E-value=6.3e-06  Score=61.65  Aligned_cols=146  Identities=9%  Similarity=0.072  Sum_probs=83.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG---LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES   83 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~   83 (196)
                      ..+.+|++.|.+||||+++.+.|.+.++   +.+...+          .+..              .+..+..+.++...
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~----------~Pt~--------------eE~~~~ylwR~~~~  128 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK----------APTD--------------EEKSHDFLWRIEKQ  128 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC----------SCCH--------------HHHTSCTTHHHHTT
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC----------CCCh--------------hhhcCCHHHHHHHh
Confidence            3578999999999999999999999984   2222210          0100              01111122222222


Q ss_pred             --CCCCcEEEeCCCCC-------------------HHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhccCCCC---
Q 029287           84 --SDSKKFLIDGFPRS-------------------EENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRNEGRV---  137 (196)
Q Consensus        84 --~~~~~~iid~~~~~-------------------~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~---  137 (196)
                        ..+...|.|++.-+                   ..+...|.+.+  ....-+-++|++|.++..+|+.+|..+-.   
T Consensus       129 lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~W  208 (289)
T 3rhf_A          129 VPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHW  208 (289)
T ss_dssp             CCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGG
T ss_pred             CCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc
Confidence              23455667764422                   12223334332  22334448999999999999998842111   


Q ss_pred             CCcHHHHHHH--HHHHHhchHhHHHHHHh-cCcEEEEeCCCC
Q 029287          138 DDNIDTVRKR--LQVFKALNLPVINYYAR-RGKLYTINAVGT  176 (196)
Q Consensus       138 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~I~~~~~  176 (196)
                      .-+...++++  ...|......++..-+. .++|++|+++..
T Consensus       209 K~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK  250 (289)
T 3rhf_A          209 KYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKK  250 (289)
T ss_dssp             GCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCH
Confidence            1123344443  46666666656555443 478999998854

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.42  E-value=6.7e-08  Score=86.69  Aligned_cols=109  Identities=22%  Similarity=0.316  Sum_probs=64.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCC-CCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKI-VPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~-~~~   70 (196)
                      -+++|.|++||||||+++.|.   |....+.|.+              .++.+...++    ...++++++..+.. ..+
T Consensus       417 ~~~~ivG~sGsGKSTl~~ll~---g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~  493 (1284)
T 3g5u_A          417 QTVALVGNSGCGKSTTVQLMQ---RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM  493 (1284)
T ss_dssp             CEEEEECCSSSSHHHHHHHTT---TSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCH
T ss_pred             CEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCH
Confidence            478999999999999999999   5443332222              2333332222    12256676665432 333


Q ss_pred             HHHHHHHH-----HHHhc-CCC-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQ-----KEMES-SDS-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~-----~~l~~-~~~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ........     +.+.. ..+ +..+-   ..++.+++|++++++++..+|++ ++||+|+
T Consensus       494 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~i-liLDEpt  554 (1284)
T 3g5u_A          494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI-LLLDEAT  554 (1284)
T ss_dssp             HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSE-EEEESTT
T ss_pred             HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCE-EEEECCC
Confidence            32222211     11111 111 11111   24666799999999999999998 7799998

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.39  E-value=6.9e-07  Score=68.16  Aligned_cols=26  Identities=27%  Similarity=0.507  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+++|.|++||||||+++.|+..+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999999765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.38  E-value=1.1e-06  Score=68.41  Aligned_cols=26  Identities=27%  Similarity=0.507  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+++|.|++||||||+++.|+..+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            46799999999999999999999776

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.29  E-value=4.4e-07  Score=63.90  Aligned_cols=26  Identities=38%  Similarity=0.590  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      ++++|+||+||||||+++.|+..+++
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            47899999999999999999987753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.29  E-value=4.5e-07  Score=69.07  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=30.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL   43 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~   43 (196)
                      +.+|+|.||+||||||++..|++.++..+++.|..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            46888999999999999999999998877776543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.27  E-value=7.5e-07  Score=67.55  Aligned_cols=30  Identities=33%  Similarity=0.517  Sum_probs=26.5

Q ss_pred             CCCCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            5 GGKGPFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ..+.+++|+|.|++||||||+++.|++.++
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345679999999999999999999998874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.23  E-value=4.3e-07  Score=81.55  Aligned_cols=109  Identities=21%  Similarity=0.291  Sum_probs=64.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCC---C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKI---V   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~---~   68 (196)
                      -+++|.|++||||||+++.|.   |+...+.|.+.              ++.+...++    ...++++++..+..   .
T Consensus      1060 e~v~ivG~sGsGKSTl~~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~ 1136 (1284)
T 3g5u_A         1060 QTLALVGSSGCGKSTVVQLLE---RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136 (1284)
T ss_dssp             SEEEEECSSSTTHHHHHHHHT---TSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCC
Confidence            478999999999999999999   55444333321              111111111    12346677765432   2


Q ss_pred             CHHHHHHHHHH-----HHhcCC-C-CcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           69 PSEVTVSLIQK-----EMESSD-S-KKFLI---DGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        69 ~~~~~~~~i~~-----~l~~~~-~-~~~ii---d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+....+....     .+...+ + +..+-   ..++.+++|++.+++++...|++ ++||+|+
T Consensus      1137 ~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i-LiLDEpT 1199 (1284)
T 3g5u_A         1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI-LLLDEAT 1199 (1284)
T ss_dssp             CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS-EEEESCS
T ss_pred             CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE-EEEeCCc
Confidence            33333322221     222111 1 22222   23666799999999999989998 7799998

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.20  E-value=6.8e-07  Score=77.59  Aligned_cols=31  Identities=26%  Similarity=0.378  Sum_probs=27.5

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|++ ++||+|+
T Consensus       546 ~~~LSGGqkQRvaLArAL~~~P~l-LLLDEPT  576 (986)
T 2iw3_A          546 ISALSGGWKMKLALARAVLRNADI-LLLDEPT  576 (986)
T ss_dssp             GGGCCHHHHHHHHHHHHHHTTCSE-EEEESTT
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCE-EEEECCc
Confidence            445777899999999999999999 8899999

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.17  E-value=5.2e-06  Score=63.36  Aligned_cols=27  Identities=41%  Similarity=0.853  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.+|+|+|++||||||++..|+..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            356799999999999999999999776

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.13  E-value=5.1e-06  Score=64.01  Aligned_cols=27  Identities=33%  Similarity=0.537  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.+++|.||+||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999999766

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.12  E-value=1.7e-06  Score=68.11  Aligned_cols=34  Identities=12%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGE   42 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~   42 (196)
                      +.+|+|.||+||||||++..|++.++..+++.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            3578899999999999999999999988887654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.11  E-value=4.3e-07  Score=65.57  Aligned_cols=27  Identities=15%  Similarity=0.128  Sum_probs=23.4

Q ss_pred             CHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           97 SEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        97 ~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ++.|++.+++++...|++ ++||+|+..
T Consensus       108 Gq~qrv~lAraL~~~p~l-llLDEPts~  134 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAF-VILDEAQNT  134 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEE-EEECSGGGC
T ss_pred             chHHHHHHHHHHhcCCCE-EEEeCCccc
Confidence            778889999999999998 889999854

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.10  E-value=2.6e-06  Score=64.71  Aligned_cols=34  Identities=32%  Similarity=0.598  Sum_probs=28.6

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .+.|..+.|.||||+|||++++.+++.+|..++.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~   66 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIM   66 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            3456788889999999999999999999866544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.10  E-value=1.7e-06  Score=62.19  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|.||+||||||++++|+..+
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            588999999999999999999665

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.10  E-value=1.8e-06  Score=70.21  Aligned_cols=35  Identities=3%  Similarity=0.002  Sum_probs=29.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCC-------ceechhH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGL-------THLSAGE   42 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~-------~~i~~~~   42 (196)
                      ..++|+|+|++||||||+++.|++.++.       .+++.|+
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            4589999999999999999999999986       4566554

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.08  E-value=1.9e-06  Score=62.61  Aligned_cols=25  Identities=28%  Similarity=0.554  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+++|.||+||||||++++|...+
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3578999999999999999999765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.05  E-value=2.6e-06  Score=71.84  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=25.9

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCc--EEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPD--IVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~--~~i~ld~~~  122 (196)
                      +..++.++.|++.+++++...|+  + ++||+|+
T Consensus       200 ~~~LSGGe~QRv~iArAL~~~p~~~l-LlLDEPt  232 (670)
T 3ux8_A          200 AGTLSGGEAQRIRLATQIGSRLTGVL-YVLDEPS  232 (670)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCCSCE-EEEECTT
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCCCE-EEEECCc
Confidence            34566779999999999877776  7 8899999

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.04  E-value=1.4e-06  Score=65.47  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL   44 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~   44 (196)
                      +.++|.|++||||||+.+.|.   |....+.|.+.
T Consensus         3 f~v~lvG~nGaGKSTLln~L~---g~~~~~~G~i~   34 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLF---KSQVSRKASSW   34 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHH---HHHC-------
T ss_pred             eEEEEECCCCCCHHHHHHHHh---CCCCCCCCccc
Confidence            688999999999999999999   54444555443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.03  E-value=3.4e-06  Score=58.18  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|.|++||||||+++.|+..+
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            589999999999999999999654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.98  E-value=5.1e-06  Score=57.82  Aligned_cols=26  Identities=31%  Similarity=0.170  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+++|.|++||||||++..|...+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999999999999999876

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.95  E-value=6.6e-06  Score=57.60  Aligned_cols=26  Identities=19%  Similarity=0.116  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+++|.|++||||||+++.|...+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            35688999999999999999999765

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.94  E-value=7.3e-06  Score=62.50  Aligned_cols=26  Identities=35%  Similarity=0.471  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+++|.||+||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            45799999999999999999999776

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.93  E-value=6.1e-06  Score=61.57  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|.||+||||||+++.|...+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHhC
Confidence            578999999999999999999654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.92  E-value=6.4e-06  Score=61.92  Aligned_cols=27  Identities=26%  Similarity=0.546  Sum_probs=23.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      ++|.|||||||||++++|+..++...+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            889999999999999999998865443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.92  E-value=5.9e-06  Score=58.67  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +++|.|++||||||+++.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            68899999999999999999665

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.91  E-value=9.5e-06  Score=60.17  Aligned_cols=30  Identities=23%  Similarity=0.399  Sum_probs=25.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      +.-++|.||||+||||+++.++..++..++
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~   74 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFF   74 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence            445889999999999999999999875544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.91  E-value=8.5e-06  Score=68.71  Aligned_cols=32  Identities=13%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCc--EEEEeecCh
Q 029287           91 IDGFPRSEENRAAFERIMGAEPD--IVLFFDCPE  122 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~--~~i~ld~~~  122 (196)
                      ...++.++.|++.+++++...|.  -+++||+|+
T Consensus       541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt  574 (670)
T 3ux8_A          541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT  574 (670)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred             chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence            34466679999999999876654  338899999

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.91  E-value=2.8e-06  Score=59.33  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.+++|.|++||||||+++.|...+
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3588999999999999999999876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.90  E-value=6.5e-06  Score=57.72  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ...++|.||+||||||+++.++..+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.88  E-value=1.1e-05  Score=64.22  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=28.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +.|.-+.+.||||+|||+++++++..+|..++.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            446778899999999999999999999877654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.87  E-value=1.2e-05  Score=63.93  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=28.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +.|.-+.+.||||+|||+++++++..+|..++.
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~  236 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR  236 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence            345678899999999999999999999877654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.86  E-value=9.4e-06  Score=57.74  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG   41 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~   41 (196)
                      ..|+|+|++||||||++..|+++.+ ..++.|
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD   65 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRGH-RLIADD   65 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence            5788999999999999999998855 555544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.86  E-value=9.3e-06  Score=61.84  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|.||+||||||+++.|...+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhc
Confidence            588999999999999999999776

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.85  E-value=1.4e-05  Score=63.82  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=28.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +.|.-+.|.||||+|||+++++++..+|..++.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~  245 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF  245 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            345778889999999999999999999877754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.84  E-value=1.5e-05  Score=59.07  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .+.-+.|.||+|+||||+++.+++.++..++.
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            34567889999999999999999998866543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.84  E-value=1.5e-05  Score=62.47  Aligned_cols=32  Identities=25%  Similarity=0.199  Sum_probs=26.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      ...+++|.||+||||||+++.|+..++..++.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            34688999999999999999999888655444

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.83  E-value=1.3e-05  Score=60.96  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec--hhHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS--AGELL   44 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~--~~~~~   44 (196)
                      .+..+.|.||||+||||+++.++..++..++.  ..++.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~   86 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL   86 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence            34578889999999999999999998766554  33444

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.83  E-value=8.9e-06  Score=59.04  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      -+++|.|||||||||+++.|+..
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58899999999999999999954

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.83  E-value=1.5e-05  Score=61.62  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=24.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH   37 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~   37 (196)
                      +..++|.|||||||||+++.++..++...
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            35688899999999999999999886543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=1.4e-05  Score=62.93  Aligned_cols=33  Identities=18%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +.|.-+.+.||||+|||+++++++...+..++.
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            345668889999999999999999999887764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.81  E-value=1.2e-05  Score=54.79  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..++|.|++||||||+++.++..+
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999665

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.80  E-value=1.6e-05  Score=60.14  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=26.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      +..+.|.||||+||||+++.+++.++..++
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~   83 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATFL   83 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            457888999999999999999999876554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.79  E-value=1.5e-05  Score=59.03  Aligned_cols=28  Identities=18%  Similarity=0.358  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      -++|.|||||||||+++.++..++...+
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i   78 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPFI   78 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3888999999999999999988764443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.78  E-value=2e-05  Score=59.17  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=27.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .+.-+.|.||||+||||+++.+++.++..++.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            34568889999999999999999999866543

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.76  E-value=0.00016  Score=54.82  Aligned_cols=160  Identities=15%  Similarity=0.187  Sum_probs=82.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC-CceechhHHHHHHHhcCC--------h-hhHHHHHHhhcCCCCCHH-------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG-LTHLSAGELLRREIASNS--------E-YGTTILNTIKEGKIVPSE-------   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~-~~~i~~~~~~~~~~~~~~--------~-~~~~~~~~l~~~~~~~~~-------   71 (196)
                      +..|+|.||   ||+|+.+.|.+.+. ..........| ....+.        - ....+.+.+..|..+...       
T Consensus       105 ~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR-~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y  180 (295)
T 1kjw_A          105 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTR-PKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY  180 (295)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECS-CCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCEEEEECC---CHHHHHHHHHhhCccceeeeeeeccc-CCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence            356778898   79999999998763 11122111111 111110        0 233455666666554321       


Q ss_pred             -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287           72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQV  150 (196)
Q Consensus        72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~  150 (196)
                       .....+.+.+..  +..+|++--+.+..+.   . .....| ++||+..|.....++|.+|    .  +.+.+++|+..
T Consensus       181 Gt~~~~V~~~~~~--G~~vildid~~g~~~l---~-~~~~~p-i~IfI~pps~~~L~~L~~R----~--t~~~i~~rl~~  247 (295)
T 1kjw_A          181 GTSVQSVREVAEQ--GKHCILDVSANAVRRL---Q-AAHLHP-IAIFIRPRSLENVLEINKR----I--TEEQARKAFDR  247 (295)
T ss_dssp             EEEHHHHHHHHHT--TCEEEECCCTTHHHHH---H-HTTCCC-EEEEECCSSHHHHHHHCTT----S--CHHHHHHHHHH
T ss_pred             eeeHHHHHHHHhc--CCeEEEEeCHHHHHHH---H-hcccCC-eEEEEECCCHHHHHHHHhc----C--CHHHHHHHHHH
Confidence             123345555553  5667777543322211   1 123355 7788887754444457655    2  23455665554


Q ss_pred             HHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          151 FKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ....    -..+...... +|+++ ++++..+++..+|...
T Consensus       248 a~~~----e~~~~~~fd~-vivNd-~le~a~~~l~~ii~~~  282 (295)
T 1kjw_A          248 ATKL----EQEFTECFSA-IVEGD-SFEEIYHKVKRVIEDL  282 (295)
T ss_dssp             HHHH----HHHHGGGCSE-EECCS-SHHHHHHHHHHHHHHH
T ss_pred             HHHH----HHhccccCeE-EEECc-CHHHHHHHHHHHHHhc
Confidence            4221    1112233333 34444 8999999988887653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.76  E-value=1.2e-05  Score=62.27  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=25.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH   37 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~   37 (196)
                      ...|+|.|++||||||+++.|++.+++.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            45688999999999999999999987666

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.75  E-value=2.1e-05  Score=63.50  Aligned_cols=27  Identities=33%  Similarity=0.727  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.+++|+|++||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            345799999999999999999999765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.75  E-value=1.3e-05  Score=61.11  Aligned_cols=33  Identities=24%  Similarity=0.186  Sum_probs=24.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR   45 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~   45 (196)
                      .+++|.|+|||||||+++.|.   |....+.|.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~---g~~~~~~G~i~~  202 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAIN---PGLKLRVSEVSE  202 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHS---TTCCCC------
T ss_pred             CeEEEECCCCCcHHHHHHHhc---ccccccccceec
Confidence            478899999999999999999   887777776653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.74  E-value=7.9e-06  Score=63.91  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ..++|+|++||||||+++.|+..+.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999996654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.74  E-value=3.4e-05  Score=57.65  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      ..+..+.|.||+|+||||+++.+++..+..++.
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~   94 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK   94 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            345678889999999999999999998876544

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.73  E-value=2.1e-05  Score=61.31  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=27.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      +..+.|.||||+|||++++.|++.++..++..
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            45678899999999999999999998776643

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.72  E-value=2.1e-05  Score=62.96  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=28.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +.|.-|.|.||||+|||+++++++..++..++.
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            346778899999999999999999999877754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.72  E-value=7.7e-06  Score=66.04  Aligned_cols=31  Identities=29%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL   43 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~   43 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~I   60 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFV---TALIPDLTLL   60 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH---HHHCCCTTTC
T ss_pred             ceEEEECCCCCcHHHHHHHHh---cCCCCCCCEE
Confidence            588999999999999999999   4444444433

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.72  E-value=2.1e-05  Score=55.63  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.++|.|++||||||+++.|...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            378999999999999999999853

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.71  E-value=2.2e-05  Score=61.14  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +++|+||+||||||+++.|...+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            88999999999999999998554

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.71  E-value=2.2e-05  Score=62.75  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=28.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG   41 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~   41 (196)
                      +.-|.+.||||+||||+++.|++.++..++..+
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence            456888999999999999999999988776543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.71  E-value=2.4e-05  Score=58.78  Aligned_cols=28  Identities=18%  Similarity=0.358  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      -++|.||+||||||+++.|+..++...+
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i  102 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEARVPFI  102 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             eEEEECCCcChHHHHHHHHHHHcCCCEE
Confidence            3889999999999999999988754443

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.70  E-value=3.3e-05  Score=61.26  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=28.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +.|.=|.|.||||+|||+++++++..++..++.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~  246 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLR  246 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence            345678889999999999999999999877754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.70  E-value=1.4e-05  Score=63.35  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG   41 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~   41 (196)
                      ..+++|.|++||||||+.++|.   |....+.|
T Consensus        69 ~~~valvG~nGaGKSTLln~L~---Gl~~p~~G   98 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLR---GIGNEEEG   98 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH---TCCTTSTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHh---CCCCccCc
Confidence            3589999999999999999999   65444433

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.67  E-value=4.3e-05  Score=58.67  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=27.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      +.-+.|.||||+|||++++.+++..+..++..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            45688899999999999999999998766543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.66  E-value=2.5e-05  Score=54.69  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.+|+|++||||||++.+|.--+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            78899999999999999998544

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.65  E-value=3.9e-05  Score=53.59  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +..++|.|++|+||||+++.+++.+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3457789999999999999999886

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.65  E-value=1.2e-05  Score=64.64  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      -+++|.|++||||||++++|+..
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            47888999999999999999943

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.65  E-value=2.5e-05  Score=60.73  Aligned_cols=32  Identities=22%  Similarity=0.426  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCce-echhHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTH-LSAGELL   44 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~-i~~~~~~   44 (196)
                      .+++|.|+|||||||+++.|.   |... ...|.+.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~---g~~~~~~~G~I~  248 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALL---GLQNEILTNDVS  248 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH---CCSSCCCCC---
T ss_pred             CEEEEECCCCccHHHHHHHHh---ccccccccCCcc
Confidence            478999999999999999999   7766 6666654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.64  E-value=2.6e-05  Score=59.88  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+++|+|++||||||+++.|...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            468899999999999999999954

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.64  E-value=3.9e-05  Score=60.15  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .-+++|.||+||||||+++.|...+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3578999999999999999999654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.62  E-value=3.9e-05  Score=55.58  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|.|++||||||+++.|+..+
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            578889999999999999999553

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.62  E-value=4.2e-05  Score=57.98  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=25.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      +.-+.|.||+|+||||+++.+++.++..++
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            456778999999999999999999876554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.61  E-value=4.9e-05  Score=57.69  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+..+.|.||||+||||+++.+++.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34568889999999999999999887

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.61  E-value=2.5e-05  Score=61.04  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+++|.|++||||||+++.|...+
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            478889999999999999999544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.61  E-value=4.6e-05  Score=58.54  Aligned_cols=30  Identities=20%  Similarity=0.266  Sum_probs=25.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh-CCcee
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTHL   38 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~i   38 (196)
                      +.-+.|.||||+|||++++.+++.+ +..++
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            4678889999999999999999988 54443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.61  E-value=4.1e-05  Score=58.14  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.++++.|++||||||++..|+..+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.60  E-value=1.9e-05  Score=58.78  Aligned_cols=30  Identities=20%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .-+.|.||+|+||||+++.+++.++..++.
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~   74 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFS   74 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            346789999999999999999998765543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.60  E-value=4.4e-05  Score=59.82  Aligned_cols=31  Identities=19%  Similarity=0.271  Sum_probs=26.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +..+.|.||+|+||||+++.|++.++..++.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~  102 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI  102 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            3467789999999999999999999766544

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.59  E-value=4.4e-05  Score=53.49  Aligned_cols=31  Identities=19%  Similarity=0.153  Sum_probs=23.6

Q ss_pred             CcccCCCCceEEEEEcCCCCChHHHHHHHHH
Q 029287            1 MQVKGGKGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         1 m~~~~~~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      |.......++.|+|.|.+||||||+++.|..
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhc
Confidence            4333344568899999999999999999985

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.59  E-value=4.4e-05  Score=60.70  Aligned_cols=24  Identities=33%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|+||+||||||+++.|...+
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhc
Confidence            478899999999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.59  E-value=5e-05  Score=55.19  Aligned_cols=26  Identities=12%  Similarity=0.073  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      +..++|.||+|+||||+++.+++.++
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            45778899999999999999998763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.58  E-value=5.7e-05  Score=58.42  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ...+++|+|+|||||||+++.|...+
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            34789999999999999999998654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.57  E-value=5.3e-05  Score=53.94  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.|.|++|+||||+++.++..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            577889999999999999999876

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.57  E-value=5.3e-05  Score=54.45  Aligned_cols=27  Identities=15%  Similarity=0.115  Sum_probs=22.8

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ....+.|++.|++||||||++..|...
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            345678899999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.56  E-value=1.9e-05  Score=60.96  Aligned_cols=80  Identities=18%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      .+++|.|++||||||+++.|...+   ..+.+.+....   ..+.        .    .+             ......-
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~---~~e~--------~----~~-------------~~~~~i~  220 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIED---TEEI--------V----FK-------------HHKNYTQ  220 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEES---SCCC--------C----CS-------------SCSSEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECC---eecc--------c----cc-------------cchhEEE
Confidence            378899999999999999999443   22222221100   0000        0    00             0001111


Q ss_pred             EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           90 LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        90 iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      ++.+  .++.|+..++.++...|++ ++||+|..
T Consensus       221 ~~~g--gg~~~r~~la~aL~~~p~i-lildE~~~  251 (330)
T 2pt7_A          221 LFFG--GNITSADCLKSCLRMRPDR-IILGELRS  251 (330)
T ss_dssp             EECB--TTBCHHHHHHHHTTSCCSE-EEECCCCS
T ss_pred             EEeC--CChhHHHHHHHHhhhCCCE-EEEcCCCh
Confidence            1211  4667899999999999999 77999874

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.56  E-value=5.4e-05  Score=58.94  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=26.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      +.-+.|.||+|+|||++++.+++.++..++..
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            34578899999999999999999998766543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.55  E-value=5.1e-05  Score=53.84  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.++|.|++||||||+++.|...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            478999999999999999999943

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.55  E-value=4.5e-05  Score=53.10  Aligned_cols=25  Identities=24%  Similarity=0.325  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +..+.|.|++|+||||+++.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3456889999999999999999886

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.55  E-value=6.1e-05  Score=58.68  Aligned_cols=32  Identities=31%  Similarity=0.406  Sum_probs=27.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .+.-+.|.|++|+||||+++.+++.++..++.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            35678889999999999999999998866543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.54  E-value=6.7e-05  Score=51.95  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=23.1

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +...+.|++.|.+||||||+.+.|...
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            345688999999999999999999854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.54  E-value=0.00018  Score=58.90  Aligned_cols=94  Identities=14%  Similarity=0.144  Sum_probs=52.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CC--ceechhHHHHHHHhcCChhhHHHHHHh-hcCCCCCHHHHHHHHHHHHhc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---GL--THLSAGELLRREIASNSEYGTTILNTI-KEGKIVPSEVTVSLIQKEMES   83 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~i~~~l~~   83 (196)
                      -+++|.|++||||||+++.++...   |-  ..+...+           ....+.... ..+.  ..       .+....
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee-----------~~~~l~~~~~~~g~--~~-------~~~~~~  341 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEE-----------SRAQLLRNAYSWGM--DF-------EEMERQ  341 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS-----------CHHHHHHHHHTTSC--CH-------HHHHHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC-----------CHHHHHHHHHHcCC--CH-------HHHHhC
Confidence            478899999999999999998553   21  1121111           011111111 1111  10       111111


Q ss_pred             CCCCcEEEeCC----CCCHHHHHHHHHHhCCCCcEEEEeecChHHHHH
Q 029287           84 SDSKKFLIDGF----PRSEENRAAFERIMGAEPDIVLFFDCPEEEMVN  127 (196)
Q Consensus        84 ~~~~~~iid~~----~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~  127 (196)
                        +...+.+..    +.++.++..++.++...|++ +++| |...+..
T Consensus       342 --g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l-lilD-p~~~Ld~  385 (525)
T 1tf7_A          342 --NLLKIVCAYPESAGLEDHLQIIKSEINDFKPAR-IAID-SLSALAR  385 (525)
T ss_dssp             --TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSE-EEEE-CHHHHTS
T ss_pred             --CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCE-EEEc-ChHHHHh
Confidence              112233433    34577888888888889998 7799 8876543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.53  E-value=8.6e-05  Score=59.98  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .|.-++|.||||+||||+++.++...+..++.
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~   79 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFH   79 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            34458899999999999999999998876654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.53  E-value=7.4e-05  Score=54.10  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      +..++|.|++|+||||+++.+++.++
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34788899999999999999998874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.52  E-value=5.4e-05  Score=60.19  Aligned_cols=20  Identities=25%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~   30 (196)
                      .++|+|++||||||+++.|.
T Consensus        44 ~vaLvG~nGaGKSTLln~L~   63 (427)
T 2qag_B           44 NILCVGETGLGKSTLMDTLF   63 (427)
T ss_dssp             EEEEECSTTSSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            39999999999999999999

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.51  E-value=7.7e-05  Score=61.00  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=27.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +..+.|.||+|+||||+++.+++.+|..++.
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~  107 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE  107 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            4578889999999999999999999877654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.51  E-value=7.8e-05  Score=57.92  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+++|+|+|||||||+.+.|...+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.50  E-value=6.9e-05  Score=53.59  Aligned_cols=27  Identities=11%  Similarity=-0.005  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT   36 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~   36 (196)
                      ..+++.||||+||||++..|++.++-.
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l~g~   85 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFIQGA   85 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            458889999999999999999887533

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.50  E-value=8.8e-05  Score=57.10  Aligned_cols=31  Identities=19%  Similarity=0.066  Sum_probs=26.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +..+.|.|++|+||||+++.+++.++..++.
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~   85 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKT   85 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            3457889999999999999999998766544

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.50  E-value=6.1e-05  Score=54.16  Aligned_cols=22  Identities=27%  Similarity=0.187  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      -+++|.|++||||||++..|+.
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5888999999999999999985

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.49  E-value=6.9e-05  Score=51.92  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=22.0

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ....+.|++.|++||||||+++.|...
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhC
Confidence            345688999999999999999998843

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.49  E-value=8.8e-05  Score=56.94  Aligned_cols=27  Identities=33%  Similarity=0.477  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.+|+++|++||||||++..|+..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999999776

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.48  E-value=7.4e-05  Score=51.34  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...++|.|++|+||||+.+.|.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~   24 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALT   24 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999998

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.48  E-value=8e-05  Score=59.40  Aligned_cols=26  Identities=42%  Similarity=0.655  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+|++.|++||||||++..|+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999776

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.48  E-value=6.9e-05  Score=56.71  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|.|+|||||||+++.|+..+
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478899999999999999998765

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.48  E-value=7.4e-05  Score=51.90  Aligned_cols=30  Identities=13%  Similarity=0.265  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      .-++|.|+||+||||++..|.+. |...++-
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r-G~~lvaD   46 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR-GHQLVCD   46 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence            45788999999999999999986 7665543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.47  E-value=9.5e-05  Score=51.85  Aligned_cols=26  Identities=12%  Similarity=0.046  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ...+.|+|.|.+||||||+++.|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            44578899999999999999999843

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.47  E-value=8.5e-05  Score=50.53  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      -+.+|.||+||||||+..+|.=
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4778899999999999999873

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.47  E-value=6.7e-05  Score=54.81  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      -+++|.|++||||||++..|+..
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            58889999999999999999964

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.47  E-value=1.5e-05  Score=60.77  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL   44 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~   44 (196)
                      .+++|.|+|||||||+++.|.   |......|++.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~---g~~~~~~G~I~  205 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAIS---PELGLRTNEIS  205 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHC---C----------
T ss_pred             CEEEEECCCCCCHHHHHHHhc---cccccccccee
Confidence            488999999999999999999   76655555554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.46  E-value=0.00012  Score=55.62  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..++|.||+|+||||+++.+++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            478889999999999999999986

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.46  E-value=2.5e-06  Score=62.27  Aligned_cols=31  Identities=29%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL   44 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~   44 (196)
                      +++|.||+||||||++++|+   +....+.|++.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~---g~~~~~~G~i~   59 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFV---TALIPDLTLLH   59 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH---HHHSCCTTTC-
T ss_pred             EEEEECCCCCCHHHHHHHHh---cccccCCCeEE
Confidence            45789999999999999999   54444555443

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.46  E-value=8e-05  Score=53.20  Aligned_cols=23  Identities=35%  Similarity=0.673  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .||+++++|++|||||+.+..+.
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~   26 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMM   26 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHH
Confidence            46899999999999999987764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.44  E-value=8.5e-05  Score=57.48  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+. ++|.||+|+||||+++.|++.+
T Consensus        36 ~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           36 LPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            345 8889999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.43  E-value=9.5e-05  Score=52.01  Aligned_cols=24  Identities=17%  Similarity=0.183  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...+.|+|.|.+||||||+.+.|.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~   44 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            356789999999999999999998

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.43  E-value=4.1e-05  Score=63.81  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcee-chhHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHL-SAGELL   44 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i-~~~~~~   44 (196)
                      .++|+|++||||||++++|+   |+... +.|.+.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~---Gl~~P~~sG~vt   78 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALS---GVALPRGSGIVT   78 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHH---SCC-------CC
T ss_pred             eEEEECCCCChHHHHHHHHh---CCCCCCCCCeEE
Confidence            48999999999999999999   87544 455543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.43  E-value=0.00012  Score=51.17  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .++.|+|.|++|+||||+.+.|..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            347899999999999999999984

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.43  E-value=9.6e-05  Score=50.46  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|++.|++||||||+++.|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999999853

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.42  E-value=0.00013  Score=58.67  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=25.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC--Ccee
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG--LTHL   38 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~--~~~i   38 (196)
                      +.-+.+.||||+|||++++.+++.++  ..++
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~   94 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFC   94 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEE
Confidence            35678899999999999999999997  5444

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.42  E-value=0.00011  Score=56.34  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=26.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh---CCc--eechhHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY---GLT--HLSAGEL   43 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~---~~~--~i~~~~~   43 (196)
                      +..++|.||+|+||||+++.+++.+   +..  .++..++
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~   76 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   76 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence            3467789999999999999999877   443  4454444

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.42  E-value=9.3e-05  Score=49.95  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .-+.|.|++|+|||++++.+.+..
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            456789999999999999999764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.41  E-value=8.5e-05  Score=56.56  Aligned_cols=23  Identities=30%  Similarity=0.691  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+++|.|+|||||||+++.|. ..
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            578999999999999999999 54

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.40  E-value=0.00013  Score=58.32  Aligned_cols=26  Identities=38%  Similarity=0.629  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +|.+|++.|++||||||++..|+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999876

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.39  E-value=0.00013  Score=51.55  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ...+.|+|.|.+|+||||+++.|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45588999999999999999999853

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.39  E-value=0.00011  Score=50.96  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46889999999999999999984

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.39  E-value=0.00011  Score=62.89  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      +.|.-|.|.||||+|||++++.++..+|..++..
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v  269 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence            4567788999999999999999999998777643

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.39  E-value=0.00013  Score=57.38  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=26.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +.-++|.|++|+|||++++.+++.++..++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~  178 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN  178 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence            4578889999999999999999998876654

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.39  E-value=7.4e-05  Score=52.40  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCC
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      +.|+|++||||||++..|+.. |.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~   24 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-AP   24 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CS
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CC
Confidence            678999999999999999966 54

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.39  E-value=5.5e-05  Score=54.00  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ....++|.|++||||||+.+.|.
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLT   47 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            34789999999999999999988

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.39  E-value=0.00014  Score=59.89  Aligned_cols=29  Identities=31%  Similarity=0.421  Sum_probs=24.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH   37 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~   37 (196)
                      ...++|.||||+||||+++.++..++...
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~  136 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLGRKF  136 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence            34788899999999999999999886544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.38  E-value=5.1e-05  Score=58.91  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|+|++||||||+++.|+...
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999999665

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.38  E-value=5e-05  Score=60.76  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|.|++||||||+++.|+...
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            478999999999999999999665

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.38  E-value=0.00011  Score=50.87  Aligned_cols=24  Identities=21%  Similarity=0.445  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...+.|++.|.+||||||+++.|.
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHh
Confidence            455889999999999999999987

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.37  E-value=0.00012  Score=52.31  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.|.|++|+||||+++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            37889999999999999999875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.37  E-value=0.00017  Score=58.61  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=24.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      +.-++|.||||+||||++++++...+..++
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i   93 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARVPFI   93 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            344889999999999999999998765544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.37  E-value=2.5e-05  Score=68.00  Aligned_cols=32  Identities=16%  Similarity=0.342  Sum_probs=27.8

Q ss_pred             EeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH
Q 029287           91 IDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE  123 (196)
Q Consensus        91 id~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~  123 (196)
                      +..++.++.|++.+++++...|++ ++||+|+.
T Consensus       899 ~~~LSGGQkQRVaLArAL~~~P~L-LLLDEPT~  930 (986)
T 2iw3_A          899 IRGLSGGQKVKLVLAAGTWQRPHL-IVLDEPTN  930 (986)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCCSE-EEEECGGG
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCE-EEEECCcc
Confidence            345777899999999999999999 78999993

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.36  E-value=0.00014  Score=58.36  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=26.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh-CCce--echhHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY-GLTH--LSAGELL   44 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~-~~~~--i~~~~~~   44 (196)
                      +.-+.|.||||+|||++++.++..+ +..+  ++..++.
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~  205 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV  205 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence            4578889999999999999999998 5444  3444443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.35  E-value=0.0001  Score=55.31  Aligned_cols=24  Identities=13%  Similarity=0.230  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|.|++||||||++..++...
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            478899999999999999998643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.35  E-value=0.00013  Score=51.84  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ....+.|+|.|.+||||||+++.|...
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence            345688999999999999999999854

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.35  E-value=0.00016  Score=52.00  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.++|.|.+||||||++..|...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45788999999999999999999775

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.34  E-value=0.00016  Score=48.98  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +.|++.|++||||||+++.|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57888999999999999999854

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.34  E-value=0.00014  Score=53.26  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..+.|+|+|.+|+||||+++.|.
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~   50 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSIL   50 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHc
Confidence            45889999999999999999999

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.33  E-value=0.00016  Score=55.87  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=20.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +++.||+|+||||+++.+++.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999999875

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.33  E-value=0.00017  Score=56.07  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ++.++|+|+|++|+||||++..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999998776

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.33  E-value=0.0002  Score=49.07  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +..+.|++.|.+||||||+...|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4568899999999999999999974

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.33  E-value=0.00016  Score=56.21  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+..++|.|++|+||||+++.+++.+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34578889999999999999999877

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.32  E-value=0.00013  Score=50.39  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|++.|++||||||+.+.|..
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999984

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.32  E-value=0.00014  Score=50.19  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+||||||+++.|..
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            6899999999999999999984

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.32  E-value=0.00014  Score=50.98  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ++.|++.|.+||||||++..|...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            378999999999999999999853

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.31  E-value=0.00014  Score=50.70  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|++.|++||||||+.+.|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            4678999999999999999999843

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.31  E-value=0.00013  Score=51.02  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|+|.|++||||||+++.|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999999983

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.30  E-value=0.00017  Score=57.92  Aligned_cols=30  Identities=23%  Similarity=0.288  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      ..++|.||||+||||+++.+++.++..++.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~   80 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVER   80 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            357789999999999999999998766544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.30  E-value=0.00013  Score=55.52  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+.|+|.|++||||||+.+.|.
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~   39 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLF   39 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHh
Confidence            4788999999999999999988

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.30  E-value=8.5e-05  Score=60.59  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..++|.||+||||||++++|...+
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            468999999999999999999554

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.30  E-value=0.00021  Score=51.65  Aligned_cols=26  Identities=31%  Similarity=0.425  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++.|+|.|.+||||||++..|....
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45788999999999999999999774

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.30  E-value=0.00016  Score=55.23  Aligned_cols=29  Identities=28%  Similarity=0.384  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      ..++|.|++|+||||+++.+++.++..++
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            46778999999999999999998876553

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.30  E-value=0.00016  Score=56.22  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      ..+.|.||||+||||+++.+++.++.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            57888999999999999999999863

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.30  E-value=0.00013  Score=51.31  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|++.|.+|+||||+.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4478999999999999999999854

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.29  E-value=0.00017  Score=48.99  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ++.|++.|++||||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999999998843

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.00018  Score=50.53  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ...+.|++.|++||||||++..|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34578899999999999999999843

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.28  E-value=0.00018  Score=48.81  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ++.|++.|.+||||||+++.|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            367899999999999999999854

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.28  E-value=0.00018  Score=49.21  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|++.|.+||||||+.+.|..
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            357889999999999999999983

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.28  E-value=0.00019  Score=49.32  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..+.|+|.|.+|+||||+.+.|.
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~   25 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFA   25 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEEECCCCccHHHHHHHHh
Confidence            35789999999999999999998

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.28  E-value=0.00014  Score=57.86  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +.|+|.|++||||||+++.|.
T Consensus        32 f~I~lvG~sGaGKSTLln~L~   52 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLF   52 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEEECCCCCcHHHHHHHHh
Confidence            678999999999999999999

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.27  E-value=0.00024  Score=48.98  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..++.|++.|.+||||||+.+.|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3567889999999999999999983

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.27  E-value=0.0002  Score=49.98  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ...+.|++.|++|+||||+.+.|..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            4568899999999999999999983

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.27  E-value=0.00025  Score=55.36  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+..+.|.||+|+||||+++.+++.+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            34578889999999999999999876

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.27  E-value=0.00014  Score=56.47  Aligned_cols=24  Identities=29%  Similarity=0.256  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++.|.|++||||||++..|+...
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            588999999999999999999765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.27  E-value=0.00019  Score=48.82  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ++.|++.|.+||||||+++.|...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            478999999999999999999853

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.27  E-value=0.00019  Score=49.94  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ...+.|+|.|.+||||||+++.|...
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34578999999999999999999843

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.25  E-value=0.0002  Score=48.97  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+.|++.|.+||||||+++.|.
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            4678999999999999999997

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.25  E-value=0.00025  Score=53.81  Aligned_cols=26  Identities=38%  Similarity=0.562  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+++++|++||||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45788899999999999999999776

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.25  E-value=0.00022  Score=50.21  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+++++|++||||||++..++..+
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            478889999999999986666554

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.25  E-value=0.00018  Score=56.08  Aligned_cols=26  Identities=19%  Similarity=0.374  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+..++|.||+|+||||+++.+++.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            34577889999999999999999887

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.25  E-value=0.00019  Score=54.89  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .+..+.+.||+|+||||+++.+++.++..++.
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~   78 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMF   78 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence            34567778889999999999999998765543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.25  E-value=0.00023  Score=49.98  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+|+||||+.+.|...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3478999999999999999999853

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.24  E-value=0.00024  Score=57.63  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=26.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .+.-+.|.|+||+|||++++.++..++..++.
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~  268 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFL  268 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            34568889999999999999999998866654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.24  E-value=0.00026  Score=48.87  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|++.|.+||||||+++.|..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHh
Confidence            457899999999999999999983

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.24  E-value=0.0002  Score=52.27  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      -+++|.|+|||||||++..++..
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47888999999999998877654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.23  E-value=0.00016  Score=51.22  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..+.|+|.|.+|+||||+.+.|.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            44789999999999999999986

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.23  E-value=0.00022  Score=48.53  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|++.|.+||||||+.+.|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            46889999999999999999985

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.23  E-value=0.00033  Score=49.29  Aligned_cols=25  Identities=20%  Similarity=0.458  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|++||||||+.+.|...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4688999999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.22  E-value=0.00027  Score=49.48  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+|+||||+.+.|...
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3478999999999999999999843

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.22  E-value=0.00016  Score=50.22  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...+.|++.|++||||||+...|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            467899999999999999999887

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.22  E-value=0.00031  Score=54.81  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++|.||+|+||||+++.+++.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            78889999999999999999887

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.22  E-value=0.00015  Score=50.87  Aligned_cols=26  Identities=27%  Similarity=0.102  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.|+|.|.+|+||||+++.|...+
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhc
Confidence            44789999999999999998888654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.21  E-value=0.00028  Score=49.64  Aligned_cols=25  Identities=28%  Similarity=0.512  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            3468899999999999999999985

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.21  E-value=0.00019  Score=56.10  Aligned_cols=29  Identities=17%  Similarity=0.179  Sum_probs=23.4

Q ss_pred             CCCCHHHHHHHHHHhC------CCCcEEEEeecChH
Q 029287           94 FPRSEENRAAFERIMG------AEPDIVLFFDCPEE  123 (196)
Q Consensus        94 ~~~~~~~~~~~~~~~~------~~p~~~i~ld~~~~  123 (196)
                      ++.++.|++.++.++.      ..|++ ++||+|+.
T Consensus       280 LSgGe~qr~~la~al~~~~~~~~~p~~-lllDEpt~  314 (365)
T 3qf7_A          280 LSGGERALISISLAMSLAEVASGRLDA-FFIDEGFS  314 (365)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTTTCCE-EEEESCCT
T ss_pred             CCHHHHHHHHHHHHHHhhhcccCCCCE-EEEeCCCc
Confidence            5566889999887765      68998 78999993

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.20  E-value=0.00023  Score=48.70  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|++.|.+||||||+.+.|...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999999843

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.20  E-value=0.00032  Score=49.06  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|+|.|.+||||||+++.+..
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            347999999999999999988774

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.20  E-value=0.00028  Score=54.60  Aligned_cols=27  Identities=26%  Similarity=0.208  Sum_probs=23.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ....+++|.|++||||||++..|+..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999998654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.20  E-value=0.00025  Score=50.70  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +-+.+|.|++||||||+..+|.=-+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            3577889999999999999987443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.19  E-value=0.00034  Score=49.08  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|+|.|.+|+||||+++.|...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            478999999999999999999843

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.18  E-value=0.00029  Score=49.85  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+||||||+...|...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3478999999999999999999843

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.18  E-value=0.00021  Score=57.09  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+|++.|++||||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999876

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.17  E-value=0.00024  Score=54.79  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      +.|.||+|+||||+++.+++.++
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78899999999999999998753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.17  E-value=0.00026  Score=48.36  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ++.|++.|++||||||+++.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            47889999999999999999984

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.17  E-value=0.00024  Score=48.45  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+.|++.|.+|+||||+.+.|.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHC
T ss_pred             eEEEEEECCCCCCHHHHHHHHc
Confidence            3678999999999999999887

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.17  E-value=0.00027  Score=50.48  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+||||||+++.|...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4478999999999999999999854

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.17  E-value=0.00018  Score=55.19  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTH   37 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~   37 (196)
                      -+.|.|+||+|||++++.+++.++..+
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~   74 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDF   74 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            467799999999999999999887554

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.16  E-value=0.00027  Score=50.05  Aligned_cols=25  Identities=20%  Similarity=0.166  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+|+||||+++.|...
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            4578999999999999999999854

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.16  E-value=0.00028  Score=48.97  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|++.|.+||||||+++.|...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            478999999999999999999853

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.16  E-value=0.00027  Score=48.18  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ++.|++.|++||||||+.+.|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            467899999999999999999843

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.16  E-value=0.00035  Score=48.49  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+||||||+++.|...
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3478899999999999999999854

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.15  E-value=0.0003  Score=49.98  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ...+.|+|.|.+|+||||+...|..
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            4457899999999999999999984

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.15  E-value=0.00027  Score=52.81  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+.|+|.|++||||||+.+.|.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~   24 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALT   24 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999998

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.15  E-value=0.0003  Score=49.09  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .....|++.|++|+||||+.+.|...
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999854

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.15  E-value=0.00052  Score=50.67  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=25.3

Q ss_pred             cCCCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            4 KGGKGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         4 ~~~~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++.+..++++.|..||||||++..|+..+
T Consensus         9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A            9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CTTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            345566888999999999999999999765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.14  E-value=0.00028  Score=48.78  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|++.|.+||||||+.+.|...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3478999999999999999999843

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.13  E-value=0.00034  Score=56.02  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +..++|.||+|+||||+++.++..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999999876

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.13  E-value=0.00035  Score=49.41  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ...+.|+|.|.+|+||||+++.|..
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHh
Confidence            3458899999999999999999984

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.13  E-value=0.00024  Score=49.24  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.+.|+|.|.+|+||||++..|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            457899999999999999999984

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.13  E-value=0.00035  Score=48.11  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|++.|.+||||||+.+.|...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3578999999999999999999854

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.12  E-value=0.00022  Score=48.70  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|++.|.+||||||+.+.|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            357899999999999999999985

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.12  E-value=0.00033  Score=48.52  Aligned_cols=26  Identities=19%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ...+.|++.|.+|+||||+.+.+...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999843

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.12  E-value=0.00036  Score=56.75  Aligned_cols=27  Identities=33%  Similarity=0.556  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.+|+|+|++||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999999776

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.12  E-value=0.00037  Score=49.11  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...+.|++.|.+||||||++..|.
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999999986

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.11  E-value=0.00035  Score=49.02  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+||||||+++.|...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999999853

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.11  E-value=0.00034  Score=53.12  Aligned_cols=25  Identities=32%  Similarity=0.694  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.++++.|++||||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6788999999999999999999776

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.11  E-value=0.00039  Score=48.03  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ...+.|++.|.+||||||+.+.|...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            34578999999999999999999853

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.11  E-value=0.00041  Score=53.89  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      +..+.|.|++|+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346788999999999999999998854

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.10  E-value=0.00039  Score=47.46  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|++.|++||||||+.+.|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            478999999999999999999854

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00024  Score=54.38  Aligned_cols=26  Identities=8%  Similarity=0.102  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+..+.|.||||+|||++++.+.+.+
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45677889999999999999999987

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.09  E-value=0.00036  Score=49.69  Aligned_cols=24  Identities=21%  Similarity=0.428  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|+|.|.+|+||||+++.|...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            478999999999999999998853

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.09  E-value=0.00036  Score=48.86  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            347899999999999999999984

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.09  E-value=0.00034  Score=49.22  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...+.|+|.|.+||||||++..|.
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~   38 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVK   38 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHh
Confidence            345789999999999999999988

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.08  E-value=0.00036  Score=51.63  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ....|+|+|.+||||||+...|..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999983

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.08  E-value=0.00021  Score=49.63  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=11.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|+|.|.+||||||++..|..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEEECCCCC-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999999873

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.08  E-value=0.0026  Score=48.04  Aligned_cols=160  Identities=11%  Similarity=0.129  Sum_probs=77.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCC-ceechhHHHHHHHhcCCh---------hhHHHHHHhhcCCCCCHH------
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGL-THLSAGELLRREIASNSE---------YGTTILNTIKEGKIVPSE------   71 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~-~~i~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~------   71 (196)
                      .++.|+|.||   ||+|+.+.|.+.+.- ...++....| ....+..         ....+...+..+..+...      
T Consensus        99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR-~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~  174 (292)
T 3tvt_A           99 YTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTR-PKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNL  174 (292)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECS-CCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCcc-CCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccce
Confidence            3456777887   599999999988742 2122111111 1111110         122345555555443211      


Q ss_pred             --HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecCh-HHHHHHHhhccCCCCCCcHHHHHHHH
Q 029287           72 --VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPE-EEMVNRVLNRNEGRVDDNIDTVRKRL  148 (196)
Q Consensus        72 --~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~-~~~~~Rl~~r~~~~~~~~~~~~~~~~  148 (196)
                        .....+.+.+..  +..+|+|--+.+..+   +. .....| ++||+..|. +.+.+|+.+|    .++..+.+..+.
T Consensus       175 YGT~~~~V~~~~~~--gk~viLdid~qg~~~---lk-~~~~~p-i~IFI~PpS~e~L~~r~~~r----~~e~~~~~~~r~  243 (292)
T 3tvt_A          175 YGTSVASVREVAEK--GKHCILDVSGNAIKR---LQ-VAQLYP-VAVFIKPKSVDSVMEMNRRM----TEEQAKKTYERA  243 (292)
T ss_dssp             EEEEHHHHHHHHHH--TCEEEECCCTHHHHH---HH-HTTCCC-EEEEECCSCHHHHHHTCTTS----CTTHHHHHHHHH
T ss_pred             eEEehHHHHHHHHc--CCcEEEeccchhhhh---cc-cccccc-eEEEEECCCHHHHHHHHhCC----CchhHHHHHHHH
Confidence              113445555554  556777744322221   11 223344 557777655 5555554433    344444433333


Q ss_pred             HHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          149 QVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ..       ....+.+....+ |. +.++++..+++.++|...
T Consensus       244 ~k-------~e~e~~~~fD~v-Iv-Nddle~a~~~l~~iI~~e  277 (292)
T 3tvt_A          244 IK-------MEQEFGEYFTGV-VQ-GDTIEEIYSKVKSMIWSQ  277 (292)
T ss_dssp             HH-------HHHHHTTTCSEE-EC-CSSHHHHHHHHHHHHHHH
T ss_pred             HH-------HHHhhhhhCCEE-EE-CcCHHHHHHHHHHHHHHh
Confidence            21       122233332333 33 347899999998888653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.07  E-value=0.00044  Score=55.03  Aligned_cols=26  Identities=38%  Similarity=0.562  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+|++.|++||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46788899999999999999999877

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.07  E-value=0.00041  Score=48.34  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .....|++.|.+||||||+.+.|..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3568899999999999999999983

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.06  E-value=0.00036  Score=49.09  Aligned_cols=24  Identities=21%  Similarity=0.084  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +...|++.|++||||||+.+.|..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            346889999999999999999985

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.06  E-value=0.00037  Score=53.18  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ...+.|.||+|+|||+++.+++..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3567789999999999999999764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.06  E-value=0.00032  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.207  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+||||||+.+.|..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4688999999999999999983

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.06  E-value=0.00044  Score=48.27  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +..+.|++.|.+||||||+.+.|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3568899999999999999999983

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.06  E-value=0.00046  Score=47.87  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|++.|.+|+||||+.+.|...
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            478899999999999999999843

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.05  E-value=0.00031  Score=55.51  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      -+++|.|+|||||||++..|+-
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHHH
Confidence            4788999999999999997763

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.05  E-value=0.0003  Score=57.63  Aligned_cols=20  Identities=25%  Similarity=0.308  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCChHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKI   29 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L   29 (196)
                      -+++|.|+|||||||+++.+
T Consensus        40 e~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           40 RSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             SEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHH
Confidence            47889999999999999994

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.05  E-value=0.00035  Score=48.60  Aligned_cols=24  Identities=17%  Similarity=0.153  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|++.|.+||||||+.+.|..
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Confidence            447899999999999999999984

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.05  E-value=0.00041  Score=48.74  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|++.|.+|+||||+.+.|...
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            3478999999999999999999854

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.04  E-value=0.00042  Score=47.85  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|++.|.+|+||||+.+.|...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3578999999999999999999853

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.04  E-value=0.00042  Score=53.55  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +-+.+|+||+||||||++.++.
T Consensus        23 ~~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3577899999999999999874

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.04  E-value=0.00031  Score=53.91  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~   30 (196)
                      +.+|+|++||||||++.+|.
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHH
Confidence            78899999999999999998

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.04  E-value=0.00032  Score=59.90  Aligned_cols=21  Identities=19%  Similarity=0.214  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      -+++|+||+||||||+++.++
T Consensus       577 ~i~~I~GpNGsGKSTlLr~ia  597 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTA  597 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHH
Confidence            478899999999999999998

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.03  E-value=0.00047  Score=48.29  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+|+||||+++.|...
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            3478999999999999999988853

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.03  E-value=0.00042  Score=49.52  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+|+||||+...|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578899999999999999999854

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.03  E-value=0.00037  Score=54.90  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ...++|.|+|||||||+.++|..
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            46899999999999999999996

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.03  E-value=0.00019  Score=51.67  Aligned_cols=25  Identities=16%  Similarity=0.084  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .....|+|+|.+||||||+.+.|..
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            3457889999999999999999984

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.03  E-value=0.00037  Score=48.97  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+||||||+.+.|...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            4578999999999999999999843

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.03  E-value=0.00046  Score=55.69  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -++|.|+||+||||+++.|++.+
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            45779999999999999999986

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.03  E-value=0.00049  Score=46.76  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .|++.|.+|+||||+...|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999743

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.02  E-value=0.00036  Score=49.45  Aligned_cols=23  Identities=22%  Similarity=0.066  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ++..|++.|++||||||+.+.|.
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            45688999999999999999997

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.02  E-value=0.00017  Score=48.56  Aligned_cols=25  Identities=28%  Similarity=0.149  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      .-+.|.|++|+|||++++.+.+..+
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            3467799999999999999986654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.02  E-value=0.00046  Score=49.64  Aligned_cols=27  Identities=22%  Similarity=0.457  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHH-HHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAK-IVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~-L~~~~   33 (196)
                      ...+.|++.|.+||||||+++. +...+
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4457899999999999999998 55444

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.02  E-value=0.00024  Score=54.71  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      -+.|.|++|+|||++++.+++.++
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            377899999999999999999875

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.02  E-value=0.0097  Score=50.63  Aligned_cols=160  Identities=15%  Similarity=0.182  Sum_probs=82.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhC-CceechhHHHHHHHhcCCh---------hhHHHHHHhhcCCCCCHH-------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYG-LTHLSAGELLRREIASNSE---------YGTTILNTIKEGKIVPSE-------   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~-~~~i~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-------   71 (196)
                      ++.|+|.||   ||+|+.+.|.+.+. ...+......| ....+..         ....+.+.+..+..+...       
T Consensus       531 ~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR-~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y  606 (721)
T 2xkx_A          531 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTR-PKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY  606 (721)
T ss_pred             CCEEEEECC---CHHHHHHHHHHhCccceeeccccccc-CCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence            467778998   39999999998763 12222212222 1111111         233455666666554321       


Q ss_pred             -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287           72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQV  150 (196)
Q Consensus        72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~  150 (196)
                       .....+.+.+..  +..+|+|--+.+..   .+ +.....| ++||+..|.....+++..|.      +.+.+++|+..
T Consensus       607 Gt~~~~v~~~~~~--g~~~ildi~~~~~~---~l-~~~~~~p-~~ifi~pps~~~L~~l~~R~------t~~~~~~rl~~  673 (721)
T 2xkx_A          607 GTSVQSVREVAEQ--GKHCILDVSANAVR---RL-QAAHLHP-IAIFIRPRSLENVLEINKRI------TEEQARKAFDR  673 (721)
T ss_pred             eeeHHHHHHHHHC--CCcEEEeCCHHHHH---HH-HhcccCC-EEEEEeCCcHHHHHHHhccC------CHHHHHHHHHH
Confidence             123445566653  56677875321111   11 1123355 77888877655555576662      22445555543


Q ss_pred             HHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          151 FKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ....    ...+.+...+ +|+++ ++++.++++.++|...
T Consensus       674 a~~~----e~~~~~~fd~-vi~Nd-~l~~a~~~l~~~i~~~  708 (721)
T 2xkx_A          674 ATKL----EQEFTECFSA-IVEGD-SFEEIYHKVKRVIEDL  708 (721)
T ss_pred             HHHH----HHhccccCcE-EEECc-CHHHHHHHHHHHHHhc
Confidence            3211    1111222233 34444 8999999988888653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.02  E-value=0.00045  Score=48.34  Aligned_cols=23  Identities=26%  Similarity=0.137  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|+|.|.+|+||||+.+.|..
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHc
Confidence            47899999999999999999984

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.01  E-value=0.00036  Score=48.89  Aligned_cols=24  Identities=17%  Similarity=0.451  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|+|.|.+|+||||+++.|...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999999999854

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.01  E-value=0.00039  Score=54.18  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.+|.|++||||||++.++.-
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            889999999999999999983

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.01  E-value=0.00035  Score=59.93  Aligned_cols=21  Identities=19%  Similarity=0.194  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+++|+||+||||||+++.++
T Consensus       608 ~i~~ItGpNGsGKSTlLr~ia  628 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTA  628 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHH
Confidence            578899999999999999998

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.00  E-value=0.0006  Score=54.45  Aligned_cols=27  Identities=30%  Similarity=0.434  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..|.+|++.|++||||||++..|+..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356889999999999999999999776

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.00  E-value=0.00046  Score=53.67  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++.|.|+|||||||++..++..+
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            588899999999999999998764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.00  E-value=0.00055  Score=47.98  Aligned_cols=24  Identities=17%  Similarity=0.339  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|+|.|.+|+||||+++.|...
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcC
Confidence            478999999999999999999865

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.00  E-value=0.00039  Score=51.57  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ..+.|.|++|+|||++++.+.+..+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcC
Confidence            4567899999999999999998763

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.00  E-value=0.0006  Score=51.87  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.|.||+|+||||+++.+++.+
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            7889999999999999999886

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.98  E-value=0.00064  Score=49.37  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+++++|++||||||.+-.++.++
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHH
Confidence            688889999999999998888776

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.98  E-value=0.00041  Score=52.74  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..+++|.|++||||||+.+.|.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~   29 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLL   29 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999999

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.98  E-value=0.0005  Score=48.34  Aligned_cols=22  Identities=18%  Similarity=0.448  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+.|+|.|.+||||||+.+.|.
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~   47 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFT   47 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHh
Confidence            3679999999999999999997

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.98  E-value=0.00051  Score=49.24  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..+.|++.|.+|+||||+++.|.
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~   55 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFA   55 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHH
Confidence            45789999999999999999998

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.97  E-value=0.00048  Score=52.53  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=22.0

Q ss_pred             CCCCceEEEEEcCCCCChHHHHHHHH
Q 029287            5 GGKGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         5 ~~~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +++.+-+++|+|.+|+||||+.+.|.
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~   31 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLL   31 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHh
Confidence            34455689999999999999999998

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=96.97  E-value=0.0058  Score=46.80  Aligned_cols=169  Identities=11%  Similarity=0.057  Sum_probs=77.1

Q ss_pred             ceEEEEEcCCCCChHH-------HHHHHHHHhCCce-ec--hhHHHHHHHhc--CChhhHHHHHHhhcCCCCCHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGT-------QCAKIVKNYGLTH-LS--AGELLRREIAS--NSEYGTTILNTIKEGKIVPSEVTVSL   76 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST-------~~~~L~~~~~~~~-i~--~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~   76 (196)
                      +..|+|+||.++|-=+       +...|.++|+-.+ +.  ..++.......  .......+...+..+.   -..+...
T Consensus       142 ~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~---~~ev~se  218 (337)
T 4dey_A          142 MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS---LAEVQSE  218 (337)
T ss_dssp             SCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCC---HHHHHHH
T ss_pred             CCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccc---hHHHHhH
Confidence            4558889999999764       6777788886442 22  01111110000  0001111222222222   1223344


Q ss_pred             HHHHHhcC-CCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEeecC-hHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287           77 IQKEMESS-DSKKFLIDGFPR-SEENRAAFERIMGAEPDIVLFFDCP-EEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA  153 (196)
Q Consensus        77 i~~~l~~~-~~~~~iid~~~~-~~~~~~~~~~~~~~~p~~~i~ld~~-~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~  153 (196)
                      +.+..... .+..+|+|=-+. +..+..    ...+.| ++||+.-| .+.+.+||..|+.        ..++++..-..
T Consensus       219 Ve~i~~v~~~Gk~vILDIDvQnGa~qlk----~~~~~~-i~IFI~PPS~eeLe~RL~~RGt--------~~~~rl~~al~  285 (337)
T 4dey_A          219 IERIFELARTLQLVVLDADTINHPAQLS----KTSLAP-IVVYVKISSPKVLQRLIKSRGK--------SQAKHLNVQMV  285 (337)
T ss_dssp             HHHHHHHTTTCCEEEEEETTCCSGGGTT----TSSCCC-EEEEECCSCHHHHHHHHHTTCH--------HHHTTHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCcHHHHHHHH----hcCCCC-EEEEEECcCHHHHHHHHHhCCc--------hHHHHHHHHHH
Confidence            55555543 456777774332 332221    111223 33555554 3889999988731        12222222111


Q ss_pred             chHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhhc
Q 029287          154 LNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLVT  195 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~~  195 (196)
                      ........+......++|  +.++++.++++.++|..++...
T Consensus       286 ~ae~E~~~~~~~FDyvIV--NDdLe~A~~~L~~iI~~~~~~~  325 (337)
T 4dey_A          286 AADKLAQCPPELFDVILD--ENQLEDACEHLADYLEAYWKAT  325 (337)
T ss_dssp             HHHHHHHSCGGGCSEEEC--CSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCcccCCEEEE--CCCHHHHHHHHHHHHHHHHhcc
Confidence            111111112222333333  3578999999999998876543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.97  E-value=0.00057  Score=53.30  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      +++..|.|.|.+||||||+++.+.=.++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~~   58 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIHG   58 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            5578999999999999999999865553

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.96  E-value=0.00059  Score=52.32  Aligned_cols=31  Identities=13%  Similarity=0.121  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      ..++|.|++|+||||+++.+.+..+..+++.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~   62 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDC   62 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEe
Confidence            4778899999999999999998877555554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.95  E-value=0.00067  Score=51.41  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.|.||+|+||||+++.+++.+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHh
Confidence            7889999999999999999875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.95  E-value=0.00056  Score=51.23  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            46899999999999999999983

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.95  E-value=0.00051  Score=54.80  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +-+++|.||+||||||++.++.--+
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhh
Confidence            4578899999999999999998443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.94  E-value=0.00042  Score=48.54  Aligned_cols=24  Identities=29%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|++.|.+||||||+.+.|..
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~   43 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKP   43 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            447899999999999999999883

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.94  E-value=0.0005  Score=51.04  Aligned_cols=24  Identities=17%  Similarity=0.181  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC
Confidence            457899999999999999999983

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.94  E-value=0.00067  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.|.||+|+||||+++.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            7889999999999999999875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.94  E-value=0.00064  Score=48.05  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|+|.|.+||||||++..|..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Confidence            357899999999999999999983

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.92  E-value=0.00066  Score=49.13  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..+.|+|.|.+|+||||++..|.
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~   50 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVS   50 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            45889999999999999999998

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.92  E-value=0.00067  Score=47.88  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...+.|++.|.+|+||||+.+.|.
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~   41 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYT   41 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999998

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.91  E-value=0.00054  Score=48.51  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..+.|+|.|.+||||||+++.|.
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~   46 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFI   46 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHH
Confidence            34789999999999999999997

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.91  E-value=0.00057  Score=48.21  Aligned_cols=25  Identities=16%  Similarity=0.130  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +..+.|++.|.+|+||||+++.+..
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4457899999999999999998874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.90  E-value=0.00057  Score=58.52  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      .+.-+.+.||||+|||.++++++...+..++..
T Consensus       510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v  542 (806)
T 3cf2_A          510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI  542 (806)
T ss_dssp             CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence            345678899999999999999999998877654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.89  E-value=0.00054  Score=50.80  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|+|.|.+||||||+.+.|..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g   23 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTN   23 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4688899999999999999983

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.89  E-value=0.00014  Score=57.61  Aligned_cols=28  Identities=14%  Similarity=0.061  Sum_probs=23.1

Q ss_pred             CCCCHHHHHHHHHHhCCCC--cEEEEeecCh
Q 029287           94 FPRSEENRAAFERIMGAEP--DIVLFFDCPE  122 (196)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~p--~~~i~ld~~~  122 (196)
                      ++.++.+++.++.++...|  ++ ++||+|+
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~-LlLDEpt  325 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPS-VVFDEVD  325 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSE-EEESSTT
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCE-EEEECCC
Confidence            4667889999999877677  77 7899998

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.89  E-value=0.00071  Score=48.10  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|+|.|.+|+||||+...|..
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            357899999999999999999984

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.88  E-value=0.00068  Score=48.20  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ...+.|++.|.+||||||++..+...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            34578999999999999999998853

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.88  E-value=0.00067  Score=48.09  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|+|.|.+|+||||+++.|..
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhh
Confidence            47899999999999999999974

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.88  E-value=0.0007  Score=48.44  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|+|+|.+||||||+++.|..
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhc
Confidence            47899999999999999999983

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.87  E-value=0.00079  Score=47.42  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+|+||||+...+...
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3578999999999999999999853

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.87  E-value=0.00071  Score=47.90  Aligned_cols=24  Identities=17%  Similarity=0.153  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|++.|.+||||||++..|...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            368999999999999999999853

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.86  E-value=0.00077  Score=53.92  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+..++|.|+|||||||+.+.|..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g  202 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILN  202 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             cCceEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999983

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.86  E-value=0.00052  Score=47.95  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +..+.|++.|.+||||||+...|.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.85  E-value=0.00058  Score=53.38  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +.++|.|.|||||||+.+.|...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999965

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.85  E-value=0.00056  Score=56.99  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ..++|.||+||||||+++.|+..++
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            3678899999999999999998763

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.83  E-value=0.001  Score=49.47  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      ..++|.||||+|||+++..|+..++.
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            46888999999999999999987544

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.83  E-value=0.00077  Score=47.96  Aligned_cols=23  Identities=22%  Similarity=0.132  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|++.|.+||||||+...|..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            36889999999999999999985

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.82  E-value=0.00076  Score=51.40  Aligned_cols=29  Identities=21%  Similarity=0.424  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .-++|.|+||+||||++..|.++ |...+.
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~  173 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKR-GHRLVA  173 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence            46888999999999999999986 665554

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.81  E-value=0.00082  Score=52.17  Aligned_cols=24  Identities=29%  Similarity=0.259  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++.|.|+|||||||++..++...
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            578889999999999999988654

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.81  E-value=0.00066  Score=59.16  Aligned_cols=21  Identities=19%  Similarity=0.192  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+++|+||+||||||+++.++
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            578899999999999999983

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.80  E-value=0.00099  Score=47.77  Aligned_cols=25  Identities=16%  Similarity=0.216  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+|+||||++..|...
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcC
Confidence            3478999999999999999999853

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.80  E-value=0.00089  Score=51.21  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|.|+||+||||++..++..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            45688999999999999999865

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.80  E-value=0.00086  Score=50.20  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g   25 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTG   25 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            47899999999999999999984

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.80  E-value=0.0016  Score=46.07  Aligned_cols=25  Identities=16%  Similarity=0.289  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+++++|+.||||||.+-.++.++
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3688999999999999999888887

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.79  E-value=0.0013  Score=50.66  Aligned_cols=30  Identities=13%  Similarity=0.201  Sum_probs=25.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLT   36 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~   36 (196)
                      +.+..+.+.||+|+||||+++.+++.+...
T Consensus        22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           22 RGHHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             CcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            445678889999999999999999998643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.78  E-value=0.0011  Score=47.17  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+.|+|.|.+|+||||+...|...
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999843

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.76  E-value=0.00045  Score=60.01  Aligned_cols=21  Identities=14%  Similarity=0.256  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+++|+||+||||||+.+.++
T Consensus       674 ~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          674 RVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             CEEEEESCCCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCchHHHHHHHH
Confidence            578899999999999999886

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.76  E-value=0.0012  Score=56.47  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .-++|.|+||+||||+++.|++.+
T Consensus       202 ~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          202 NNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999987

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.73  E-value=0.0011  Score=47.55  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..+.|+|.|.+|+||||+...+.
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            34789999999999999999987

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.73  E-value=0.00095  Score=51.90  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+..+++.|++|+||||+.+.|..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~  189 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTT  189 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3567899999999999999999983

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.71  E-value=0.0011  Score=50.37  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...|+|.|.+|+||||+++.|.
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~   28 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLL   28 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3578999999999999999998

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=96.69  E-value=0.00079  Score=51.27  Aligned_cols=29  Identities=14%  Similarity=0.268  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      .-++|.|+||+||||++..|.++ |...+.
T Consensus       148 ~gvli~G~sG~GKStlal~l~~~-G~~lv~  176 (312)
T 1knx_A          148 VGVLLTGRSGIGKSECALDLINK-NHLFVG  176 (312)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT-TCEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCEEEe
Confidence            45788999999999999998865 655544

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.68  E-value=0.001  Score=51.96  Aligned_cols=21  Identities=19%  Similarity=0.140  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+++|.|++||||||+.+.|.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~  200 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLT  200 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999999

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.68  E-value=0.00058  Score=55.55  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      -+.|.||||+|||++++.|++.++
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             eeEeecCchHHHHHHHHHHHHHHh
Confidence            577899999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	1e-39
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	4e-39
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	6e-39
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	6e-39
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	1e-38
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-38
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	6e-38
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	2e-34
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	7e-34
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	1e-33
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	5e-32
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	9e-30
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	5e-14
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	4e-13
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	1e-12
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	2e-10
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	5e-10
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	2e-09
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	4e-09
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	4e-09
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	2e-07
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	4e-05
d1vhta_	208	c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia co	5e-05
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	3e-04
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	6e-04
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	8e-04
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	9e-04
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	9e-04
d1uf9a_	191	c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo	0.001
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	0.002
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	0.002
d1tmka_	214	c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (S	0.003

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  131 bits (331), Expect = 1e-39
 Identities = 83/190 (43%), Positives = 119/190 (62%), Gaps = 5/190 (2%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           K   I FV+GGPGSGKGTQC KIV+ YG THLS G+LLR E++S S  G  +   +++G+
Sbjct: 6   KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQ 65

Query: 67  IVPSEVTVSLIQKEMESSDS--KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE 124
           +VP E  + +++  M +     K FLIDG+PR  +    FER +G +P ++L+ D   E 
Sbjct: 66  LVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIG-QPTLLLYVDAGPET 124

Query: 125 MVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFE 182
           M  R+L R    GRVDDN +T++KRL+ +     PVI +Y +RG +  +NA G+VD++F 
Sbjct: 125 MTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFS 184

Query: 183 QVRAVFAALK 192
           QV      LK
Sbjct: 185 QVCTHLDTLK 194

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 4e-39
 Identities = 88/190 (46%), Positives = 122/190 (64%), Gaps = 10/190 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGT-TILNTIKEGKI 67
           P + FVLGGPG+GKGTQCA+IV+ YG THLSAGELLR E  +        I   IKEGKI
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 60

Query: 68  VPSEVTVSLIQKEMESS-----DSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDC 120
           VP E+T+SL+++EM+ +        KFLIDGFPR+++N   + + M   A+   VLFFDC
Sbjct: 61  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 120

Query: 121 PEEEMVNRVLNR--NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
             E  + R L R  + GR DDN +++ KR+Q +     P+I+ Y   GK+  I+A  +VD
Sbjct: 121 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 180

Query: 179 EIFEQVRAVF 188
           E+F++V  +F
Sbjct: 181 EVFDEVVQIF 190

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  130 bits (327), Expect = 6e-39
 Identities = 88/187 (47%), Positives = 122/187 (65%), Gaps = 4/187 (2%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           P + FVLGGPGSGKGTQCA IV+++G  HLSAG+LLR+E  S S+ G  I   IK G+IV
Sbjct: 6   PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65

Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMV 126
           PS VTV L++  ++++  K FL+DGFPR+EEN  ++E  M    +   VLFFDCPEE M 
Sbjct: 66  PSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMT 125

Query: 127 NRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
            R+L R    GR DDNI++++KR   F      VI++Y +  K+  I A   V+E++  V
Sbjct: 126 QRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDV 185

Query: 185 RAVFAAL 191
             +F ++
Sbjct: 186 ENLFKSM 192

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score =  130 bits (326), Expect = 6e-39
 Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 4/186 (2%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           KG      LG PG+GKGTQ  K+ KN+ + HL+ G++LR  +AS SE G  +  T+  GK
Sbjct: 2   KGVRAVL-LGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGK 60

Query: 67  IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
           +V  E+ + LI+K +E+   K   +         +A     +  +    L          
Sbjct: 61  LVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPD 120

Query: 127 NRVLNRNEGRV---DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQ 183
           + ++ R  GR+   DDN   ++ RL+ +     P++ YY++RG    I+A  T D +F  
Sbjct: 121 SLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFAS 180

Query: 184 VRAVFA 189
           + A F+
Sbjct: 181 ILAAFS 186

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score =  129 bits (324), Expect = 1e-38
 Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 4/177 (2%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            ++G PG+GKGTQ  +IV+ YG  H+S G++ R  I   +E G    + + +G +VP EV
Sbjct: 4   VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63

Query: 73  TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
           T+ ++++ +  SD    FL+DGFPR+     A ++++ A+    +      +     ++ 
Sbjct: 64  TIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLL-ADMGRKIEHVLNIQVEKEELIA 122

Query: 132 RNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188
           R      DN DTV  RL+V      P++ +Y  +  L  IN    + ++F+ +  + 
Sbjct: 123 RLTAD--DNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL 177

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  128 bits (322), Expect = 2e-38
 Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 4/180 (2%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            ++G PG+GKGTQ  KIV  YG+ H+S G++ R  +   +  G      +  G +VP EV
Sbjct: 4   VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEV 63

Query: 73  TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLN 131
           T+ ++++ +   D +  FL+DGFPR+     A E ++  +    L +    +   + ++ 
Sbjct: 64  TIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLA-DIGRKLDYVIHIDVRQDVLME 122

Query: 132 RNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL 191
           R     ++   TV  RL+V      P++++Y ++G L  IN    ++++F  +R +   L
Sbjct: 123 RLTADDNEA--TVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGL 180

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  127 bits (319), Expect = 6e-38
 Identities = 62/180 (34%), Positives = 99/180 (55%), Gaps = 8/180 (4%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            +LG PG+GKGTQ  K+ +  G+  +S GEL RR I   ++ G      +  G +VPS++
Sbjct: 4   LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63

Query: 73  TVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNR 128
           T  L+   + + D+   F++DG+PRS E   A   +    G + D VL F   EE ++ R
Sbjct: 64  TNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLER 123

Query: 129 VLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188
           +  R   R DD  D +  R++V++    P++ YY  R +L T++AVGT+DE+F +     
Sbjct: 124 LKGRG--RADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRAL 179

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score =  118 bits (296), Expect = 2e-34
 Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 11/180 (6%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            +LG P +GKGTQ   I++ YG+  +S G++LR  + S SE G    + +  GK+V  E+
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63

Query: 73  TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132
            ++L+++ +   D +   +         +A   +  G   D VL FD P+E +V+R++  
Sbjct: 64  VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKD 123

Query: 133 NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRG-----KLYTINAVGTVDEIFEQVRAV 187
           +        +TVRKRL  +  +  P+I YY++       K   ++    V E+   +  +
Sbjct: 124 D------QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKI 177

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (293), Expect = 7e-34
 Identities = 82/183 (44%), Positives = 121/183 (66%), Gaps = 7/183 (3%)

Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASN-SEYGTTILNTIKEGKIVP 69
           + FVLGGPG+GKGTQC K+VK+Y   HLSAG+LLR E     S+YG  I N IKEG+IVP
Sbjct: 10  VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP 69

Query: 70  SEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
            E+T++L++  +     ++  KFLIDGFPR  +   +FER    E   +LFFDCPE+ M+
Sbjct: 70  QEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIML 128

Query: 127 NRVLNRNE--GRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
            R+L R +  GR DDNI++++KR   FK  ++PVI Y+  + K+  +    +V+++++ V
Sbjct: 129 ERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 188

Query: 185 RAV 187
           +  
Sbjct: 189 QDA 191

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score =  116 bits (292), Expect = 1e-33
 Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 11/175 (6%)

Query: 14  VLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT 73
           ++G PGSGKGT  ++I K++ L HLS+G+LLR  +   +E G      I +GK++P +V 
Sbjct: 11  IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVM 70

Query: 74  VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN 133
             L+  E+++     +L+DGFPR      A       + D V+  + P E +  R+ +R 
Sbjct: 71  TRLVLHELKNLTQYNWLLDGFPR--TLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDRP 128

Query: 134 EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF 188
           E        TV KRL+ ++A   PV+ YY ++G L T +   T ++I+  V A  
Sbjct: 129 E--------TVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTET-NKIWPHVYAFL 174

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  112 bits (280), Expect = 5e-32
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           P    + G P SGKGTQC  I   Y L H+SAG+LLR EIA+ SE G      +++G++V
Sbjct: 3   PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLV 62

Query: 69  PSEVTVSLIQKE--MESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
           P E+ V+++++      +    +L+DG+PRS     A E +       +L     E  + 
Sbjct: 63  PDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVE 122

Query: 127 NRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRA 186
             V +  E       + V+ RL+ +      +++ Y     +  +    TVD +F ++  
Sbjct: 123 RVVFDDTE-------EKVKLRLETYYQNIESLLSTY--ENIIVKVQGDATVDAVFAKIDE 173

Query: 187 VFAAL 191
           +  ++
Sbjct: 174 LLGSI 178

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (264), Expect = 9e-30
 Identities = 42/180 (23%), Positives = 90/180 (50%), Gaps = 14/180 (7%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            ++G PG+GKGTQ   + + +   HL+ G++LR +IA  ++ G      + +G +V  ++
Sbjct: 6   VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 65

Query: 73  TVSLIQKEMESSDSKK--FLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVN 127
            V++I+ E+ ++ + K  F++DGFPR+       ++++   G   +  +     +E +V 
Sbjct: 66  MVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVA 125

Query: 128 RVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAV 187
           R           N D ++KRL  + A   P++++Y + G    ++A      ++  +   
Sbjct: 126 R---------ITNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNK 176

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 64.4 bits (155), Expect = 5e-14
 Identities = 33/151 (21%), Positives = 50/151 (33%), Gaps = 6/151 (3%)

Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           I   +G PGSGK T   + +      +    +  R+ I ++ E         KEG +   
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63

Query: 71  EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMG--AEPDIVLFFDCPEEEMVNR 128
           +               K  +I     + E R A+E              FD P  E+V R
Sbjct: 64  QFDT-AKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122

Query: 129 VLNRNEGRVDDNIDTVRKRLQVFKAL-NLPV 158
              R    V    D +R   +  +    LPV
Sbjct: 123 NSKRGTKAVPI--DVLRSMYKSMREYLGLPV 151

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 62.7 bits (151), Expect = 4e-13
 Identities = 26/188 (13%), Positives = 49/188 (26%), Gaps = 15/188 (7%)

Query: 11  ICFVLGGPGSGKGTQCAKIV-----KNYGLTHLSAGELLRREIASNSEYGTTILNT---I 62
           I  V G PG GK T  AK+      +      ++ G+ +                    +
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 63  KEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFE------RIMGAEPDIVL 116
           ++ K +  +     I +E  +       ID                           I L
Sbjct: 63  EKQKKLQIDA-AKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 117 FFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGT 176
               P+  +  +  +    R D + ++V      F           A       +N  G 
Sbjct: 122 LEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGD 181

Query: 177 VDEIFEQV 184
                 ++
Sbjct: 182 PSIAANEI 189

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 61.5 bits (148), Expect = 1e-12
 Identities = 20/189 (10%), Positives = 57/189 (30%), Gaps = 14/189 (7%)

Query: 10  FICFVLGGPGSGKGTQCAKIV-----KNYGLTHLSAGELLRREIASNSEYGTTILNTIKE 64
            +    G PG G  T     +     +      +S G ++        E   +  + +++
Sbjct: 3   VVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK--EENLVSDRDQMRK 59

Query: 65  GKIVPSEVTVSLIQKEMESSDSKK-FLIDGFPRSEENRAAFE-----RIMGAEPDIVLFF 118
                 +    +  +++     +    +D        +          +    PD+++  
Sbjct: 60  MDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV 119

Query: 119 DCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVD 178
           +   +E++ R ++      D +  +  ++ Q                      N  G +D
Sbjct: 120 ETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLD 179

Query: 179 EIFEQVRAV 187
           +  E++  V
Sbjct: 180 QAVEELTNV 188

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 55.0 bits (131), Expect = 2e-10
 Identities = 28/187 (14%), Positives = 55/187 (29%), Gaps = 22/187 (11%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           KG  I  + G PG+GK +    I              L +E    +EY        +   
Sbjct: 4   KGINI-LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEY------DTELDT 56

Query: 67  IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
            +  E     +   ME     +           +   F         +V+      E + 
Sbjct: 57  HIIEEKDEDRLLDFMEPIMVSRG---NHVVDYHSSELFPERW---FHMVVVLHTSTEVLF 110

Query: 127 NRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
            R+  R   E +  +N++   + +           + Y     L   N   T++++   V
Sbjct: 111 ERLTKRQYSEAKRAENMEAEIQCICEE-----EARDAYEDDIVLVREN--DTLEQMAATV 163

Query: 185 RAVFAAL 191
             +   +
Sbjct: 164 EEIRERV 170

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 53.9 bits (128), Expect = 5e-10
 Identities = 17/177 (9%), Positives = 46/177 (25%), Gaps = 16/177 (9%)

Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           I  ++G  GSGK    +++        L    L  R        G  + +          
Sbjct: 8   IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDD------RK 61

Query: 71  EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVL 130
               +L         + K  +      +++     R         ++     + + +R+ 
Sbjct: 62  PWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGN-PNLSFIYLKGDFDVIESRLK 120

Query: 131 NRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAV 187
            R           +  + +  +          A    +  ++    ++ +      V
Sbjct: 121 AR--KGHFFKTQMLVTQFETLQEP-------GADETDVLVVDIDQPLEGVVASTIEV 168

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-09
 Identities = 28/182 (15%), Positives = 49/182 (26%), Gaps = 26/182 (14%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
            + G PG GK T   ++    GL +++ G+L R E   +          + E +     V
Sbjct: 8   LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR----VV 63

Query: 73  TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132
                Q             D FP                  IV         +  R+  R
Sbjct: 64  DELDNQMREGGVIVDYHGCDFFPER-------------WFHIVFVLRTDTNVLYERLETR 110

Query: 133 NEGR--VDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAA 190
                 + DNI     ++             Y         +     +E+   V  +   
Sbjct: 111 GYNEKKLTDNIQCEIFQVLYE-----EATASYKEEIVHQLPS--NKPEELENNVDQILKW 163

Query: 191 LK 192
           ++
Sbjct: 164 IE 165

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 52.4 bits (124), Expect = 4e-09
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9  PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYG 55
          P I  + G  G+GKGT C  + +      L +G + R    +   + 
Sbjct: 4  PVIT-IDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHH 49

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 51.6 bits (122), Expect = 4e-09
 Identities = 18/188 (9%), Positives = 54/188 (28%), Gaps = 21/188 (11%)

Query: 11  ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS 70
           +  + G  G GK T C ++      +    G+++   +             +       +
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNIT 63

Query: 71  EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIM---GAEPDIVLFFDCPEEEMVN 127
           +                  ++D     +E  A  + +           +      EE++ 
Sbjct: 64  D------LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117

Query: 128 RVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVG-TVDEIFEQVRA 186
           R   R   + +   +   + ++ F++  +          + Y  N        + + V+ 
Sbjct: 118 RDALR--KKDEQMGERCLELVEEFESKGID---------ERYFYNTSHLQPTNLNDIVKN 166

Query: 187 VFAALKLV 194
           +    + +
Sbjct: 167 LKTNPRFI 174

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 17/119 (14%), Positives = 35/119 (29%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
                + G   SGK T    I K++G T+L  G + R       +    +        ++
Sbjct: 3   TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALL 62

Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVN 127
                     +  +       +    P  E         + A P++       ++E+  
Sbjct: 63  DQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQ 121

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.9 bits (92), Expect = 4e-05
 Identities = 26/189 (13%), Positives = 53/189 (28%), Gaps = 21/189 (11%)

Query: 8   GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS-AGELLRREIASNSEYGTTILNTIKEGK 66
           G  I  + G PGSGK T    +    G+  +    + L   I      G       +  +
Sbjct: 3   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH----GRIDPWLPQSHQ 58

Query: 67  IVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV 126
                + ++       + +    ++DG  R +           A P   +       E +
Sbjct: 59  QNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWL---PAFTALARPLHYIVLRTTAAEAI 115

Query: 127 NRVLNRNEGRVDD--NIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV 184
            R L+R    + D   +  +  +     A    V+                  D+  +  
Sbjct: 116 ERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLP---------VSGK--DTDQALQSA 164

Query: 185 RAVFAALKL 193
                + + 
Sbjct: 165 INALQSGRF 173

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 32/209 (15%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTI-KEGKI 67
            +I  + GG GSGK T  A    + G+  + A  + R+ +   +     I +        
Sbjct: 3   RYIVALTGGIGSGKST-VANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIA 61

Query: 68  VPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGA----------------- 110
               +    +++ + ++  +K  ++        +    +I  A                 
Sbjct: 62  ADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSL 121

Query: 111 --EPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKL 168
             + + VL  D   E  + R + R++   +     +  +      L +            
Sbjct: 122 YKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVAD---------- 171

Query: 169 YTINAVGTVDEIFEQVRAVFAA-LKLVTE 196
             I+  G  D I   V  + A  L+L ++
Sbjct: 172 DVIDNNGAPDAIASDVARLHAHYLQLASQ 200

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 25/182 (13%), Positives = 47/182 (25%), Gaps = 9/182 (4%)

Query: 10  FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP 69
            +  + GG  SGK     K+   +  T         RE       G        +   + 
Sbjct: 9   TVAIL-GGESSGKSVLVNKLAAVFNTTSAWE---YGREFVFEKLGGDEQAMQYSDYPQMA 64

Query: 70  SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRV 129
                 +      S        D        +A   +  G     +          V  +
Sbjct: 65  LGHQRYIDYAVRHSHKIAFIDTDFI----TTQAFCIQYEGKAHPFLDSMIKEYPFDVTIL 120

Query: 130 LNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA 189
           L  N   VDD + +     +  +     +     +    Y      +  + + QV+AV  
Sbjct: 121 LKNNTEWVDDGLRS-LGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIE 179

Query: 190 AL 191
            +
Sbjct: 180 KV 181

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 31/212 (14%), Positives = 64/212 (30%), Gaps = 41/212 (19%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           +  +I    G  G+GK T    +V+      +      R      ++    + + + + K
Sbjct: 1   RSKYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFTREP--GGTQLAEKLRSLLLDIK 57

Query: 67  IVPSEVTVSLIQKEMESSDS--------KKFLIDGFPRSEENRAAFERIMGA-------- 110
            V  EV     +  M  +          K  L +G     +      +            
Sbjct: 58  SVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQH 117

Query: 111 -------------EPDIVLFFDCPEEEMVNRVLNRNEGRV--DDNIDTVRKRLQVFKALN 155
                         PD+ L+ D   E  + R   R E      ++ D   +    +  L 
Sbjct: 118 MLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLEL- 176

Query: 156 LPVINYYARRGKLYTINAVGTVDEIFEQVRAV 187
                  A+   ++TI+A   ++ + + +R  
Sbjct: 177 ------AAQDKSIHTIDATQPLEAVMDAIRTT 202

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 31/201 (15%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGK 66
           +G  I    G   +GK TQ  K+V+        A   L R    ++E G  + + +++  
Sbjct: 2   RGALIVLE-GVDRAGKSTQSRKLVEALCAAGHRA--ELLRFPERSTEIGKLLSSYLQKKS 58

Query: 67  IVPSEVTVSLIQKEMES---------SDSKKFLIDGFPRSEENRAAFER----------- 106
            V       L                S     ++D +  S       +            
Sbjct: 59  DVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPD 118

Query: 107 IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRG 166
           +   +PD+VLF      +   R    +E    +N     + L+ F  L            
Sbjct: 119 VGLPKPDLVLFLQLQLADAAKRGAFGHE--RYENGAFQERALRCFHQL------MKDTTL 170

Query: 167 KLYTINAVGTVDEIFEQVRAV 187
               ++A  +++ + E +R +
Sbjct: 171 NWKMVDASKSIEAVHEDIRVL 191

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 36.9 bits (84), Expect = 9e-04
 Identities = 22/193 (11%), Positives = 60/193 (31%), Gaps = 6/193 (3%)

Query: 4   KGGKGPFICFVLGGPGSGKGTQCAKIVK--NYGLTHLSAGELLRREIASNSEYGTTILNT 61
           K  + P    + G PGSGK +  + I +     +  +      ++    +        + 
Sbjct: 27  KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDV 86

Query: 62  IKEGKIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVL-FFDC 120
           +K      + +T ++I +  +   +          ++        +     +  +     
Sbjct: 87  VKHVTPYSNRMTEAIISRLSDQGYNLVI-EGTGRTTDVPIQTATMLQAKGYETKMYVMAV 145

Query: 121 PEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEI 180
           P+       + R E       D +  R    +A ++ V N       L+       +   
Sbjct: 146 PKINSYLGTIERYE--TMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLY 203

Query: 181 FEQVRAVFAALKL 193
             +   ++++L+ 
Sbjct: 204 NREGVKLYSSLET 216

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (84), Expect = 9e-04
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 4  KGGKGPFICFVLGGPGSGKGTQCAKIVK 31
           G K P   F  G  GSGK     +I  
Sbjct: 22 TGNKCPLFIFFSGPQGSGKSFTSIQIYN 49

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 6/191 (3%)

Query: 7   KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTIL-NTIKEG 65
           K P I  + G  GSGK T  A +++++G   L    L  R   +  E    +    +  G
Sbjct: 1   KHPIIIGITGNIGSGKST-VAALLRSWGYPVLDLDALAARARENKEEELKRLFPEAVVGG 59

Query: 66  KIVPSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEM 125
           ++    +   +          +  +     R      +         +I L F+   E  
Sbjct: 60  RLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKGWEGR 119

Query: 126 VNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKL----YTINAVGTVDEIF 181
           ++  L       +     + +     + +            K     + +   G+++++ 
Sbjct: 120 LHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMPEEEKRKRATWVLENTGSLEDLE 179

Query: 182 EQVRAVFAALK 192
             ++AV A L 
Sbjct: 180 RALKAVLAELT 190

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 25/180 (13%), Positives = 48/180 (26%), Gaps = 44/180 (24%)

Query: 9   PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV 68
           P +   +G PG+GK T   + + + G  H++   L   +   +S         +++GK V
Sbjct: 14  PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSS-----CQAALRQGKRV 68

Query: 69  PSEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLF-FDCPEEEMVN 127
                                + +  P         +    A      F F    E+  +
Sbjct: 69  --------------------VIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARH 108

Query: 128 RVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAV 187
               R          +        K    P                  T+ E F ++  +
Sbjct: 109 NNRFREMTDPSHAPVSDMVMFSYRKQFEPP------------------TLAEGFLEILEI 150

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 18/187 (9%), Positives = 48/187 (25%), Gaps = 28/187 (14%)

Query: 13  FVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEV 72
           F++G  G G  T   ++ +  G   +                 T+ +             
Sbjct: 6   FMVGARGCGMTTVGRELARALGYEFVDTDI---------FMQHTSGMTVADVVAAEGWPG 56

Query: 73  TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNR 132
                 + +++  +   ++             + +      + LF    E  +  +   +
Sbjct: 57  FRRRESEALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQ 116

Query: 133 NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLY------TINAVGTVDEIFEQVRA 186
              R       + + ++               R  LY       ++A      I   V  
Sbjct: 117 AHQRPTLTGRPIAEEME----------AVLREREALYQDVAHYVVDATQPPAAI---VCE 163

Query: 187 VFAALKL 193
           +   ++L
Sbjct: 164 LMQTMRL 170

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 214

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 33/206 (16%)

Query: 6   GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA-GELLRREIASNSEYGTTILNTIKE 64
           G+G  I    G   +GK TQC  + K      L    +LL+    S    G        +
Sbjct: 1   GRGKLILIE-GLDRTGKTTQCNILYK-----KLQPNCKLLKFPERSTRIGGLINEYLTDD 54

Query: 65  GKIVPSEVTVSLIQKEMESSDSKK---------FLIDGFPRSEENRAAFERIMGA----- 110
              +  +    L          K           ++D +  S    +A +   G      
Sbjct: 55  SFQLSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWC 114

Query: 111 --------EPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYY 162
                   +PD+ LF    + +         + R  + +    K  Q F  + L      
Sbjct: 115 LQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERY-ETVKFQEKVKQTF--MKLLDKEIR 171

Query: 163 ARRGKLYTINAVG-TVDEIFEQVRAV 187
                +  ++     + E+   +  +
Sbjct: 172 KGDESITIVDVTNKGIQEVEALIWQI 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	100.0
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.98
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.98
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.97
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.97
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.97
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.88
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.87
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.84
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.81
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.8
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.8
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.79
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.78
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.78
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.78
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.76
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.75
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.73
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.71
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.7
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.7
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.69
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.68
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.66
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.65
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.64
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.6
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.59
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.58
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.58
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.52
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.47
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.46
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.45
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.44
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.43
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.43
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	99.43
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.43
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.42
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.4
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	99.38
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.37
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	99.36
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.35
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.35
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.35
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.34
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.33
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.31
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.31
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.29
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.29
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.29
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.25
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.24
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.24
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.23
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.22
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.2
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.17
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.14
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.11
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.11
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.08
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.96
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.79
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.77
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.64
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.59
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.48
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.45
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.42
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.34
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.19
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.19
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.18
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.16
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.16
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.12
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.12
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.11
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.07
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.07
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.05
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.04
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.99
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.94
d1okkd2	207	GTPase domain of the signal recognition particle r	97.93
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.92
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.91
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.87
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.87
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.87
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.85
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.75
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.74
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.74
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.67
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.63
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.61
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.6
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	97.6
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.59
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.59
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.58
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.57
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.49
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.45
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.42
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.42
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.41
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.41
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.41
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.39
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.36
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.34
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.34
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.33
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.33
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.32
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.27
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.25
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.25
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.24
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.24
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.22
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.22
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.2
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.18
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.18
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.18
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.17
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.17
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.17
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.17
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.14
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.14
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.14
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.13
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.12
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.11
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.11
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.11
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.1
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.09
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.08
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.07
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.07
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.07
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.07
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.06
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.06
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.05
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.05
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.04
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.04
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.04
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.02
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.01
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.99
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.98
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.98
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.98
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.97
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.96
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.94
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.94
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.94
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.93
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.92
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.9
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.9
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.89
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.87
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.86
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.85
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.84
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.82
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.81
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.79
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.75
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.75
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.72
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.71
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.69
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.67
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.65
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.64
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.6
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.59
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.54
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.53
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.5
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.5
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.49
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.48
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.48
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.47
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.47
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.44
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.43
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.35
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.32
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.3
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.26
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.21
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.2
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.13
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.06
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.98
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.89
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.78
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.7
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.7
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.63
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.58
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.55
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.42
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.35
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.34
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.26
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.16
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.11
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.07
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.0
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.99
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.98
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.95
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	94.88
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.82
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	94.77
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.74
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.69
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.68
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	94.58
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	94.54
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.53
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	94.48
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.44
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.31
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	94.29
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	94.08
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.81
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	93.77
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	93.63
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	93.61
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.54
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	93.45
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	93.38
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	93.36
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.3
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	93.03
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	92.82
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.74
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	92.56
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	92.45
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	92.32
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.1
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.98
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	90.93
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.77
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.53
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	90.41
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.28
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	89.74
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.19
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	89.13
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.04
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.88
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	88.21
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	87.88
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	85.02
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	84.82
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	83.46
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.23
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	80.8

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=3.1e-32  Score=194.97  Aligned_cols=185  Identities=48%  Similarity=0.839  Sum_probs=165.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDS   86 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~   86 (196)
                      ++|.+|+|.|||||||||+|+.|+++||+.+++.|+++++......+.+..+......+...++......+.........
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQG   83 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhhc
Confidence            46789999999999999999999999999999999999999888888999999999999999988888888877777677


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHH
Q 029287           87 KKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYY  162 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (196)
                      .++++|++|.+..+...+....  ...|+++|+|++|++++.+|+.+|.  ..+..++.+.+++|+..|.....++.++|
T Consensus        84 ~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~~~y  163 (194)
T d1qf9a_          84 KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHY  163 (194)
T ss_dssp             CCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999988887653  4568999999999999999998874  24566789999999999999999999999


Q ss_pred             HhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          163 ARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       163 ~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      .+...+++||+++++++|+++|.+.++.+
T Consensus       164 ~~~~~~~~Id~~~~ieeV~~~I~~ii~~~  192 (194)
T d1qf9a_         164 NKFDKVKIIPANRDVNEVYNDVENLFKSM  192 (194)
T ss_dssp             HHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             HhCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            88889999999999999999999988765

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=100.00  E-value=4.1e-31  Score=188.27  Aligned_cols=176  Identities=32%  Similarity=0.590  Sum_probs=158.6

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD   85 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~   85 (196)
                      ++++|.|+|+|||||||||+++.|+++||+.+++.|+++++.....++.+..+.+.+..+...++..+..++.+.+....
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~   82 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT   82 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh
Confidence            45678888999999999999999999999999999999999999999999999999999999999999998888888777


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      +.+||+||||.+..|...+...  ..|+.+|+|++|.+.+.+|+..|        .+.+.+|++.|.....+.+++|.+.
T Consensus        83 ~~~~ildGfPr~~~q~~~l~~~--~~~~~vi~L~v~~~~l~~R~~~r--------~e~~~kr~~~y~~~~~~v~~~Y~~~  152 (189)
T d2ak3a1          83 QYNWLLDGFPRTLPQAEALDRA--YQIDTVINLNVPFEVIKQRLTDR--------PETVVKRLKAYEAQTEPVLEYYRKK  152 (189)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTT--CCCCEEEEEECCHHHHHHHHTGS--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcccccccchhhHHHHhhhc--CcceEEEEEeccchhhhhhcccc--------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7889999999999998888753  37899999999999999999765        4678899999999999999999998


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      +.++.||++ ++++|+++|.+.+...+
T Consensus       153 ~~l~~idg~-~~~eV~~~I~~~i~~~l  178 (189)
T d2ak3a1         153 GVLETFSGT-ETNKIWPHVYAFLQTKL  178 (189)
T ss_dssp             TCEEEEECS-SHHHHHHHHHHHHHTTS
T ss_pred             CCEEEECCC-ChHHHHHHHHHHHHHHh
Confidence            888899988 57999999999887654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=100.00  E-value=1.2e-30  Score=186.14  Aligned_cols=181  Identities=34%  Similarity=0.627  Sum_probs=159.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SK   87 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~   87 (196)
                      .+.|+|.|||||||||+|+.|+++||+.+++.|+++|+.....++.+..+..++..|...++..+...+...+.... ..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~~   82 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKN   82 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccccC
Confidence            35666799999999999999999999999999999999988999999999999999999999988888888776533 47


Q ss_pred             cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           88 KFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        88 ~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      +|++++||.+..|...+...   ....+.++++|++|.+.+.+|+..|. .+.+++.+.+.+|...|.....++.++|.+
T Consensus        83 g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~-~~~d~~~e~i~~R~~~y~~~~~p~~~~y~~  161 (190)
T d1ak2a1          83 GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL-IHSDDNKKALKIRLEAYHTQTTPLVEYYSK  161 (190)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999988877664   45788999999999999999999885 234567889999999999999999999999


Q ss_pred             cCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          165 RGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       165 ~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      .+.++.||+++++++|+++|.+.+.+
T Consensus       162 ~~~~~~Id~~~s~eeV~~~I~~~l~k  187 (190)
T d1ak2a1         162 RGIHSAIDASQTPDVVFASILAAFSK  187 (190)
T ss_dssp             TTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            88888999999999999999888865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.6e-31  Score=190.21  Aligned_cols=183  Identities=45%  Similarity=0.818  Sum_probs=164.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD--   85 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~--   85 (196)
                      ++.+|+|.|||||||||+|+.|+++||+.+++.|+++++.....+..+..+.+.+..+...++..+...+...+....  
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   86 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDT   86 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcccc
Confidence            467899999999999999999999999999999999999999999999999999999999999999888888886543  


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287           86 SKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVINYYA  163 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (196)
                      ..++++|+||.+..|...+...+. .|..++++++++++...|...+.  ..|.+++.+.+.+|++.|.....+++++|.
T Consensus        87 ~~g~ildg~pr~~~qa~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y~  165 (194)
T d3adka_          87 SKGFLIDGYPREVKQGEEFERKIG-QPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYE  165 (194)
T ss_dssp             CSCEEEESCCSSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHHHHT
T ss_pred             cccceeeeccchhHHHHHHHHHhC-CccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999888665 67888999999999999988663  456777888899999999999999999999


Q ss_pred             hcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          164 RRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       164 ~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ..+.++.||+++++++|+++|.+.|+.+
T Consensus       166 ~~~~~~~Id~~~s~~eV~~~I~~~i~~l  193 (194)
T d3adka_         166 KRGIVRKVNAEGSVDDVFSQVCTHLDTL  193 (194)
T ss_dssp             TTTCEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            9888999999999999999999988765

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.2e-30  Score=184.59  Aligned_cols=172  Identities=24%  Similarity=0.549  Sum_probs=152.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--CC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS--DS   86 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~--~~   86 (196)
                      .|.|+|+|||||||||+++.|+++||+.+++.+++++......++.+..+++.+..+...+.......+...+...  ..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            3678889999999999999999999999999999999998899999999999999999999988888887777653  34


Q ss_pred             CcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHH
Q 029287           87 KKFLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYA  163 (196)
Q Consensus        87 ~~~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (196)
                      .++++++||.+..|+..+...   ...+|+++|+|++|++++.+|+..+         +.+.+|.+.|.....++.++|.
T Consensus        82 ~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~---------~~~~~r~~~y~~~~~~v~~~y~  152 (180)
T d1akya1          82 NGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA---------DALKKRLAAYHAQTEPIVDFYK  152 (180)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH---------HHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc---------ccccchHHHHHHHHHHHHHHHH
Confidence            789999999999888766553   4578999999999999999999765         5677888999999899999999


Q ss_pred             hcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          164 RRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       164 ~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      +.+.++.||+++++++|+++|.+.+.
T Consensus       153 ~~~~~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         153 KTGIWAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             HHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            98889999999999999999887764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=8.9e-31  Score=185.43  Aligned_cols=176  Identities=35%  Similarity=0.699  Sum_probs=156.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~   88 (196)
                      |.|+|.|||||||||+|+.|+++||+.+++.++++++......+.+..+...+..+...+.......+...+...+ ..+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            5788899999999999999999999999999999999988889999999999999999999988888888877543 467


Q ss_pred             EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      +++++||....+...+...   ....|+++++|++|++.+.+|+..|  +|..+..+.+.+|+..|.+...++.++|.+ 
T Consensus        81 ~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r--~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~-  157 (181)
T d2cdna1          81 FILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEYYRD-  157 (181)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHHHHHHHHHHHHTTTHHHHTTT-
T ss_pred             EEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccc--ccccchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999998888777654   4568999999999999999999988  667778899999999999998888888865 


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                       .++.||+++++++|+++|.+.+.
T Consensus       158 -~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         158 -QLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             -TEEEEECCSCHHHHHHHHHHHTT
T ss_pred             -CeEEEECCCCHHHHHHHHHHHhC
Confidence             58889999999999999887654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=6.9e-31  Score=185.68  Aligned_cols=172  Identities=33%  Similarity=0.652  Sum_probs=151.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~   88 (196)
                      |.|+|+|||||||||+|+.|+++||+.+++.+++++......++.+..+.+.+..+...++..+...+...+...+ ..+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            5788899999999999999999999999999999999988899999999999999999999988888887776543 368


Q ss_pred             EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh----
Q 029287           89 FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR----  164 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  164 (196)
                      ++++++|.+..+...+... ...|+++|+|++|++++.+|+..|      ++.+.+++|+..|.+...++.++|..    
T Consensus        81 ~i~~g~pr~~~~~~~~~~~-~~~~~~vi~L~~~~~~l~~R~~~~------~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~  153 (179)
T d1e4va1          81 FLLDGFPRTIPQADAMKEA-GINVDYVLEFDVPDELIVDRIVKD------DQEETVRKRLVEYHQMTAPLIGYYSKEAEA  153 (179)
T ss_dssp             EEEESCCCSHHHHHHHHHT-TCCCSEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             eeecccccchHHhhhhhhc-cCCceEEEEeccchhhhhhhhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999888877764 568999999999999999999876      36788999999999998888888875    


Q ss_pred             -cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          165 -RGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       165 -~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                       ...++.||+++++++|+++|.+.+
T Consensus       154 ~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         154 GNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             TSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCHHHHHHHHHHHh
Confidence             246788999999999999988764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=181.31  Aligned_cols=182  Identities=50%  Similarity=0.910  Sum_probs=157.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc----
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIAS-NSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES----   83 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~----   83 (196)
                      |++|+|.|||||||||+|+.|+++||+.+++.|+++|..... .++.+..+...+..+..+++......+...+..    
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            689999999999999999999999999999999999987643 467788888999999999988877776665542    


Q ss_pred             -CCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhH
Q 029287           84 -SDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPV  158 (196)
Q Consensus        84 -~~~~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~  158 (196)
                       ....++++++||.+..|...+...+  ...++.+++++++.+...+|+.+|.  .+|.+++.+.+.+++..|.+...++
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l  160 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPI  160 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHH
Confidence             2457899999999999888887754  3456888999999999999999883  4577888999999999999999999


Q ss_pred             HHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHh
Q 029287          159 INYYARRGKLYTINAVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       159 ~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~  190 (196)
                      .++|.+.+.+..||+++++++|+++|.+.+++
T Consensus       161 ~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         161 IDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            99999888898999999999999999988865

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.6e-29  Score=179.96  Aligned_cols=185  Identities=44%  Similarity=0.868  Sum_probs=157.6

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHh-cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhc-
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIA-SNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMES-   83 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~-   83 (196)
                      ++...+|+|+|||||||||+|+.|+++||+.+++.|+++|.... .....+..+++....+...++......+...+.. 
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   84 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhh
Confidence            34557888999999999999999999999999999999987654 4467788888999998888887776666555443 


Q ss_pred             --CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287           84 --SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN--EGRVDDNIDTVRKRLQVFKALNLPVI  159 (196)
Q Consensus        84 --~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (196)
                        ....+++++++|.+..|+..+...+ ..|+.+++|++|++++.+|+..+.  .+|.+...+.+.+|+..|.....++.
T Consensus        85 ~~~~~~~~vl~g~p~~~~q~~~~~~~~-~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l~  163 (196)
T d1ukza_          85 VKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI  163 (196)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred             hccCCCceeeeccchhHHHHHHHHHhc-cccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence              2347899999999999988887765 478999999999999999998763  35667789999999999999999999


Q ss_pred             HHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          160 NYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       160 ~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ++|.....++.||+++++++|+++|.+.|++.
T Consensus       164 ~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~~  195 (196)
T d1ukza_         164 EYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  195 (196)
T ss_dssp             HHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence            99998889999999999999999999988764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.97  E-value=1.9e-29  Score=178.69  Aligned_cols=176  Identities=32%  Similarity=0.634  Sum_probs=155.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~   88 (196)
                      |+|+|.|||||||||+++.|+++||+.+++.|++++......++.+..+.+.+..|...++......+...+.... ..+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~   80 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccc
Confidence            5788999999999999999999999999999999999888889999999999999999999988888888887554 367


Q ss_pred             EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      +++++||.+..+...+...   ....+.++++++++.+.+..|+..+      ++.+.+++|++.|.+...++.++|.+.
T Consensus        81 ~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~------~~~e~i~~R~~~y~~~~~~i~~~y~~~  154 (182)
T d1s3ga1          81 FLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD------DNPDTVTNRLEVNMNQTAPLLAFYDSK  154 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc------chhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999888877664   3556788899999999999998654      367889999999999999999999988


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ..++.||+++++++|+++|.+.++..
T Consensus       155 ~~~~~Id~~~~~eeV~~~I~~il~~~  180 (182)
T d1s3ga1         155 EVLVNINGQKDIKDVFKDLDVILQGN  180 (182)
T ss_dssp             TCEEEEECSSCHHHHHHHHHHHHTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            89999999999999999998887643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=2.8e-29  Score=177.62  Aligned_cols=178  Identities=31%  Similarity=0.632  Sum_probs=157.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-CCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD-SKK   88 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~-~~~   88 (196)
                      |.|+|.|||||||||+++.|+++||+.+++.+++++......++.+..+.+.+..+..+++......+........ ..+
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcC
Confidence            4688999999999999999999999999999999999888889999999999999999999888888777766543 378


Q ss_pred             EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           89 FLIDGFPRSEENRAAFERI---MGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~---~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      ++++++|....+...+...   ....++.+++|+++.+.+.+|+..+      ++.+.+++|++.|.....++.++|.+.
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~------~~~e~~~~Rl~~y~~~~~~l~~~y~~~  154 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD------DNEATVANRLEVNMKQMKPLVDFYEQK  154 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc------cchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999998777666554   4568999999999999999999865      367889999999999999999999998


Q ss_pred             CcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          166 GKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       166 ~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      +.++.||+++++++|+++|.+.|..+.+
T Consensus       155 ~~~~~Id~~~~~eeV~~~I~~~L~~l~k  182 (182)
T d1zina1         155 GYLRNINGEQDMEKVFADIRELLGGLAR  182 (182)
T ss_dssp             TCEEEEECSSCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhccC
Confidence            8999999999999999999999987753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=8.8e-30  Score=181.45  Aligned_cols=178  Identities=31%  Similarity=0.612  Sum_probs=150.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESS--   84 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~--   84 (196)
                      +.||+|+|.|||||||||+|+.|+++||+.+++.+++++.......+....+.+.+..+...+...............  
T Consensus         1 ~~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   80 (189)
T d1zaka1           1 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   80 (189)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhccc
Confidence            358899999999999999999999999999999999999998888888889999999998888776655555554432  


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           85 DSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        85 ~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      ...+++++++|.+..|...+.. ....|+.+|+|++|++++.+|+..+.      +.+.+++|+..|.....++.++|. 
T Consensus        81 ~~~~~vid~~~~~~~q~~~l~~-~~~~p~~~i~L~~~~e~l~~R~~~~~------~~e~~~~rl~~y~~~~~~l~~~y~-  152 (189)
T d1zaka1          81 QENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVFDD------TEEKVKLRLETYYQNIESLLSTYE-  152 (189)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTTC------CTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ccCcEEeeccchhhHHHhhhhh-cccccchheeechhhhhhhhhccccc------hHHHHHHHHHHHHHHHHHHHHHhC-
Confidence            2367899999999999888865 45589999999999999999997652      346778889999988888877773 


Q ss_pred             cCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          165 RGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       165 ~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                       ..++.||+++++++|+++|.+.+..+++
T Consensus       153 -~~~~~Id~~~~idev~~~I~~~l~~il~  180 (189)
T d1zaka1         153 -NIIVKVQGDATVDAVFAKIDELLGSILE  180 (189)
T ss_dssp             -CCEEEEECSSCHHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence             5788899999999999999999888764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4e-22  Score=143.39  Aligned_cols=170  Identities=17%  Similarity=0.200  Sum_probs=105.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHH-----------H
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVT-----------V   74 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~   74 (196)
                      .++|+|+|++||||||+++.|++.+   |+.++...     .+...++.+..+++.+...........           .
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~-----~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~   77 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR-----FPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQV   77 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-----SSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe-----CCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHH
Confidence            4689999999999999999999987   44443221     112233445555555554443332211           1


Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCHHHHH-----------HHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHH
Q 029287           75 SLIQKEMESSDSKKFLIDGFPRSEENRA-----------AFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDT  143 (196)
Q Consensus        75 ~~i~~~l~~~~~~~~iid~~~~~~~~~~-----------~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~  143 (196)
                      ..+...+.  .+..+|+|+|..+.....           .......+.||++||||+|++.+.+|+..++  ...++.+.
T Consensus        78 ~~i~~~l~--~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~--~~~E~~~~  153 (209)
T d1nn5a_          78 PLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH--ERYENGAF  153 (209)
T ss_dssp             HHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-------CTTCSHHH
T ss_pred             HhHHHHhh--cccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhcccc--cccccHHH
Confidence            23333333  356789999875432221           1111235789999999999999999987652  22335666


Q ss_pred             HHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          144 VRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      +++..+.|.....      ..+.++++||+++++++|.++|..+++.++.
T Consensus       154 ~~r~~~~Y~~l~~------~~~~~~~~IDa~~~~e~V~~~I~~~v~~~l~  197 (209)
T d1nn5a_         154 QERALRCFHQLMK------DTTLNWKMVDASKSIEAVHEDIRVLSEDAIA  197 (209)
T ss_dssp             HHHHHHHHHHHTT------CTTSCEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH------hCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence            5555555655421      1234789999999999999999998887753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=9.1e-21  Score=136.43  Aligned_cols=170  Identities=18%  Similarity=0.270  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCC-----CHH----------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV-----PSE----------   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~----------   71 (196)
                      ++|+|+|++||||||+++.|++++   |+..+..   . + .+.+++.+..+++....+...     ...          
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~---~-~-ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~   77 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF---T-R-EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAAR   77 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE---E-E-SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE---e-c-CCCCccchhhhHHHHhccccccccccchHHHHHHHHHHH
Confidence            578899999999999999999987   4432211   0 0 012334555555555433211     110          


Q ss_pred             --HHHHHHHHHHhcCCCCcEEEeCCCCCH------------HHHHHHHHH--hCCCCcEEEEeecChHHHHHHHhhccC-
Q 029287           72 --VTVSLIQKEMESSDSKKFLIDGFPRSE------------ENRAAFERI--MGAEPDIVLFFDCPEEEMVNRVLNRNE-  134 (196)
Q Consensus        72 --~~~~~i~~~l~~~~~~~~iid~~~~~~------------~~~~~~~~~--~~~~p~~~i~ld~~~~~~~~Rl~~r~~-  134 (196)
                        .....+...+.  .+..+|+|+|..+.            .....+...  -.+.||++||||+|++++.+|+.+|.. 
T Consensus        78 ~~~~~~~i~~~l~--~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~  155 (210)
T d4tmka_          78 VQLVETVIKPALA--NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL  155 (210)
T ss_dssp             HHHHHHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHH--cCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhcccc
Confidence              11122333333  35677899876431            111111111  146899999999999999999999843 


Q ss_pred             CCC-CCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhh
Q 029287          135 GRV-DDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKL  193 (196)
Q Consensus       135 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~  193 (196)
                      ++. ..+.+.+++..+.|...       +....++.+||+++++|+|.++|.+.+.++++
T Consensus       156 ~~~~~~~~~~~~~v~~~y~~~-------~~~~~~~~~IDa~~~~e~v~~~I~~~i~~~l~  208 (210)
T d4tmka_         156 DRIEQESFDFFNRTRARYLEL-------AAQDKSIHTIDATQPLEAVMDAIRTTVTHWVK  208 (210)
T ss_dssp             CTTTTSCHHHHHHHHHHHHHH-------HHTCTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhccHHHHHHHHHHHHHH-------HhcCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            222 23566666555556443       23445789999999999999999999988764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.4e-19  Score=125.78  Aligned_cols=159  Identities=12%  Similarity=0.125  Sum_probs=99.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHH-------HHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSE-------VTVSLIQKE   80 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~i~~~   80 (196)
                      .+.+++|.|+|||||||+++.|++++|+.+++.+++......          .....+......       .....+...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI----------EKMASGEPLNDDDRKPWLQALNDAAFAM   74 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHh----------hhhccCcceehhhhHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999998776432211          011111111111       112222222


Q ss_pred             HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHH
Q 029287           81 MESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVIN  160 (196)
Q Consensus        81 l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (196)
                      +..  ...++.+........+ .+.... ..+..++||++|++++.+|+.+|.  +.....+.++.+.+.|+...     
T Consensus        75 ~~~--~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~v~l~~~~e~~~~Rl~~R~--~~~~~~~~~~~~~~~~e~~~-----  143 (171)
T d1knqa_          75 QRT--NKVSLIVCSALKKHYR-DLLREG-NPNLSFIYLKGDFDVIESRLKARK--GHFFKTQMLVTQFETLQEPG-----  143 (171)
T ss_dssp             HHH--CSEEEEECCCCSHHHH-HHHHTT-CTTEEEEEEECCHHHHHHHHHTST--TCCCCHHHHHHHHHHCCCCC-----
T ss_pred             Hhc--cCceEeeccchHHHHH-HHHHHh-CCCceEEeecCCHHHHHHHHHhCc--CCCccHHHHHhhHHHhhCCC-----
Confidence            222  3344444332223333 333323 356677999999999999999883  33335666666665554432     


Q ss_pred             HHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          161 YYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       161 ~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                        .+...+++||+++++|++.++|.+.++
T Consensus       144 --~~e~~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         144 --ADETDVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             --TTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             --cccCCEEEEeCCCCHHHHHHHHHHHhc
Confidence              233467889999999999999888775

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.9e-19  Score=128.76  Aligned_cols=178  Identities=15%  Similarity=0.173  Sum_probs=102.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCC-CCHHHH-----------HH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKI-VPSEVT-----------VS   75 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-----------~~   75 (196)
                      +.++|+|+|++||||||+++.|++.+.......     ......++.+..+++.+..... ......           ..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~   76 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL-----KFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   76 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEE-----ESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEE-----EECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHH
Confidence            347888999999999999999999984322111     0112334555666666644322 222111           11


Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCHHHHH-----------HHHH--HhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHH
Q 029287           76 LIQKEMESSDSKKFLIDGFPRSEENRA-----------AFER--IMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNID  142 (196)
Q Consensus        76 ~i~~~l~~~~~~~~iid~~~~~~~~~~-----------~~~~--~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~  142 (196)
                      .+...+.  .+..+|+|+|..+.....           ++..  ...+.||++||||+||....+|...+...+ .++.+
T Consensus        77 ~i~~~l~--~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~~-~e~~~  153 (214)
T d1tmka_          77 KIKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDER-YETVK  153 (214)
T ss_dssp             HHHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSST-TCCHH
T ss_pred             HHHHHHh--cCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchhh-hhhHH
Confidence            2333333  467789999876532221           1111  124689999999999999988877664322 33566


Q ss_pred             HHHHHHHHHHhchHhHHHHHHhcCcEEEEeC-CCCHhHHHHHHHHHHHhhhhhc
Q 029287          143 TVRKRLQVFKALNLPVINYYARRGKLYTINA-VGTVDEIFEQVRAVFAALKLVT  195 (196)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~-~~~~~~v~~~i~~~i~~~~~~~  195 (196)
                      .+++..+.|.........  ....++.+||+ +.++++|.++|.+.++.++..+
T Consensus       154 ~~~~v~~~Y~~l~~~~~~--~~~~~~~iID~s~~~~eev~~~I~~~v~~~l~~~  205 (214)
T d1tmka_         154 FQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVEALIWQIVEPVLSTH  205 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHH--TTCTTEEEEECTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhhh--hCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHhh
Confidence            666656677665332211  12457888996 4789999999999998887543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.80  E-value=8.3e-19  Score=122.01  Aligned_cols=159  Identities=14%  Similarity=0.223  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCcE
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKKF   89 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~~   89 (196)
                      .|+|+|++||||||+++.|++++|+.+++.|+++++....  +    +.+.+.. |...........+...   .....+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~g~--~----i~ei~~~~g~~~~~~~~~~~l~~~---~~~~~~   74 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGM--T----VADVVAAEGWPGFRRRESEALQAV---ATPNRV   74 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCS--C----HHHHHHHHHHHHHHHHHHHHHHHH---CCSSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhhhh--h----hhhhhcccchHHHHHHHHHHHHhh---ccccce
Confidence            4667899999999999999999999999999887654211  1    1222211 1110111111222221   123333


Q ss_pred             EEe--CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC--CCCCCcHHHHHHHH-HHHHhchHhHHHHHHh
Q 029287           90 LID--GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE--GRVDDNIDTVRKRL-QVFKALNLPVINYYAR  164 (196)
Q Consensus        90 iid--~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  164 (196)
                      ++.  +.+.....+..+..     ...+|||++|++.+.+|+..+..  .|.........+.+ ..|.+. .+....++ 
T Consensus        75 ~~~~~~~~~~~~~~~~l~~-----~~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er-~~lY~~~a-  147 (170)
T d1e6ca_          75 VATGGGMVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLRER-EALYQDVA-  147 (170)
T ss_dssp             EECCTTGGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHH-HHHHHHHC-
T ss_pred             ecccccchhhhHHHHhhhc-----cceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHH-HHHHHHcC-
Confidence            332  22233333333332     24679999999999999986632  33333333333332 223322 22222222 


Q ss_pred             cCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          165 RGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       165 ~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                        . ++||++++++++.++|.+.+
T Consensus       148 --~-~~Id~~~~~~eiv~~Ii~~L  168 (170)
T d1e6ca_         148 --H-YVVDATQPPAAIVCELMQTM  168 (170)
T ss_dssp             --S-EEEETTSCHHHHHHHHHHHT
T ss_pred             --C-EEEcCCCCHHHHHHHHHHHc
Confidence              2 57899999999988766543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=6e-19  Score=124.90  Aligned_cols=167  Identities=22%  Similarity=0.250  Sum_probs=97.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH----------------
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS----------------   70 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------   70 (196)
                      +.||+|+|+|++||||||+|+.|.+ +|+.+++.|.+.+.......+....+.........+..                
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~~-~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~   79 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLRS-WGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA   79 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH-TTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhh
Confidence            3589999999999999999999965 79999999888765443332211111000000111110                


Q ss_pred             --HHHH----HHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHH
Q 029287           71 --EVTV----SLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTV  144 (196)
Q Consensus        71 --~~~~----~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~  144 (196)
                        ...+    ..+...........++++.....       ...+...+|.+||++||++++.+|+.+|+    ..+.+.+
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~-------~~~~~~~~d~vI~v~a~~e~r~~Rl~~R~----~~~~~~~  148 (191)
T d1uf9a_          80 LEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLF-------EKGWEGRLHGTLLVAAPLEERVRRVMARS----GLSREEV  148 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTT-------TTTCGGGSSEEEEECCCHHHHHHHHHTTT----CCTTHHH
T ss_pred             hhhhhhHHHHHHHHhhhhhcccceEEEEeeccc-------cccccccceeEEEEecchhhHHHHHHhcc----cchHHHH
Confidence              1111    22222222334456677754321       11123357899999999999999999883    2233444


Q ss_pred             HHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          145 RKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      ..+.....  .......   .+. ++|+++++.+++..+|.++++++
T Consensus       149 ~~~~~~q~--~~~~~~~---~aD-~vI~N~~s~~~l~~~v~~il~~l  189 (191)
T d1uf9a_         149 LARERAQM--PEEEKRK---RAT-WVLENTGSLEDLERALKAVLAEL  189 (191)
T ss_dssp             HHHHTTSC--CHHHHHH---HCS-EEECCSSHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhCC--CHHHHHH---hCC-EEEECCCCHHHHHHHHHHHHHHc
Confidence            43332211  1111112   233 36888999999999999888765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.79  E-value=1.6e-18  Score=124.08  Aligned_cols=165  Identities=18%  Similarity=0.238  Sum_probs=100.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH------------------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPS------------------   70 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------   70 (196)
                      +++|+|+|++||||||+++.|. .+|+++++.|.+.++.+..+.+....+.+.........+                  
T Consensus         2 ~~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~   80 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhh
Confidence            5899999999999999999887 469999999999887766666655555444332211111                  


Q ss_pred             -----HHHHHHHHHH----HhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           71 -----EVTVSLIQKE----MESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        71 -----~~~~~~i~~~----l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                           ...++.+...    ........++++. |.      .+...+...+|.+|++++|++++.+|+..|+    ..+.
T Consensus        81 ~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~-~l------l~e~~~~~~~d~ii~v~~~~~~r~~R~~~R~----~~s~  149 (205)
T d1jjva_          81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PL------LIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNF  149 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TT------TTTTTCGGGCSEEEEEECCHHHHHHHHC---------CH
T ss_pred             hhHhhcccCHHHHHHHHHHHhhccCCeEEEEe-cc------ccccchhhhhhheeeecchHHHHHHHHHhcC----CchH
Confidence                 1223333222    2233334455664 31      1112223367899999999999999999883    3356


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhh
Q 029287          142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      +.+.++.....+.  .....++   . ++|+++++.++..+++.+.+..+
T Consensus       150 e~~~~~~~~Q~~~--~~k~~~a---D-~vI~N~~~l~~~~~~l~~~i~~i  193 (205)
T d1jjva_         150 EQIQRIMNSQVSQ--QERLKWA---D-DVINNDAELAQNLPHLQQKVLEL  193 (205)
T ss_dssp             HHHHHHHHHSCCH--HHHHHHC---S-EEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCH--HHHHHhC---C-EEEECCCChHHHHHHHHHHHHHH
Confidence            6666655433222  1122223   2 46889999888777776666554

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=8.1e-20  Score=131.02  Aligned_cols=163  Identities=15%  Similarity=0.149  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCC----HHHH---------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY---GLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVP----SEVT---------   73 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~---------   73 (196)
                      |+|+|+|++||||||+++.|++.+   |..++..     +....+.+.+..+......+....    ....         
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~-----~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~   75 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL-----AFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA   75 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-----ESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE-----ecCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHH
Confidence            589999999999999999999987   4433211     000112222333333222221110    0000         


Q ss_pred             --HHHHHHHHhcCCCCcEEEeCCCCCHHHHH--------------HHHH--H---hCCCCcEEEEeecChHHHHHHHhhc
Q 029287           74 --VSLIQKEMESSDSKKFLIDGFPRSEENRA--------------AFER--I---MGAEPDIVLFFDCPEEEMVNRVLNR  132 (196)
Q Consensus        74 --~~~i~~~l~~~~~~~~iid~~~~~~~~~~--------------~~~~--~---~~~~p~~~i~ld~~~~~~~~Rl~~r  132 (196)
                        ...+....  ..+..+|+|+|..+.....              .+..  .   ..+.||++|||++|++++.+|+.+|
T Consensus        76 ~~~~~~~~~~--~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R  153 (208)
T d1gsia_          76 GAVHTIQGLC--RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGR  153 (208)
T ss_dssp             TTHHHHHHHH--HHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHH
T ss_pred             HHHHhHHHHh--hhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhh
Confidence              01111111  1356788999875422111              1111  1   1468999999999999999999988


Q ss_pred             cCC-------CCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHH
Q 029287          133 NEG-------RVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQV  184 (196)
Q Consensus       133 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i  184 (196)
                      ...       +.+...+.+++..+.|.+...    . ....++++||+++++++|.++|
T Consensus       154 ~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~~~----~-~~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         154 AQRDPGRARDNYERDAELQQRTGAVYAELAA----Q-GWGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             HHHCTTCCCCTTTTCHHHHHHHHHHHHHHHH----H-TTTSEEEEECTTCCHHHHHHHH
T ss_pred             hcccccccccchhhHHHHHHHHHHHHHHHHH----h-cCCCCEEEEeCCCCHHHHHHhh
Confidence            421       112234444444455555421    1 1134689999999999999876

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.78  E-value=6e-18  Score=117.57  Aligned_cols=165  Identities=13%  Similarity=0.218  Sum_probs=90.9

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC-CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHH----HHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG-LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTV----SLIQKEM   81 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~i~~~l   81 (196)
                      ++++.|+|+|+|||||||+++.|+++|+ ..+++.+++.... .......      ...+.........    ..+....
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i   75 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYD------TELDTHIIEEKDEDRLLDFMEPIM   75 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC------------CCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHH-hhhhhHH------HhhcccchHHHHHHHHHHHHHhhh
Confidence            4568899999999999999999999996 5556655555432 1111111      0111122222222    2222222


Q ss_pred             hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH-HHHHHHhchHhHHH
Q 029287           82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK-RLQVFKALNLPVIN  160 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  160 (196)
                      .  .....+++.+.....        ....++.+|||+||++++.+|+.+|.  +  ........ ..+.+........+
T Consensus        76 ~--~~~~~~~~~~~~~~~--------~~~~~~~vI~L~~~~e~l~~Rl~~R~--~--~~~~~~~~~~~e~~~~~~~~~~~  141 (174)
T d1y63a_          76 V--SRGNHVVDYHSSELF--------PERWFHMVVVLHTSTEVLFERLTKRQ--Y--SEAKRAENMEAEIQCICEEEARD  141 (174)
T ss_dssp             T--SSSEEEEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHTT--C--CHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             h--hcccccccHHHHHHH--------HHhcCceEEEEECCHHHHHHHHHhCC--C--cccccccchhhhhhhhhHHHHHH
Confidence            2  234566776654311        11247788999999999999999883  2  11111110 01122222222233


Q ss_pred             HHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhh
Q 029287          161 YYARRGKLYTINAVGTVDEIFEQVRAVFAALKLV  194 (196)
Q Consensus       161 ~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~  194 (196)
                      .|.+  .+.+.+++.+++++.+.|.++++++-.+
T Consensus       142 ~~~~--~~~i~~~~~t~ee~~~~V~~I~~~i~~~  173 (174)
T d1y63a_         142 AYED--DIVLVRENDTLEQMAATVEEIRERVEVL  173 (174)
T ss_dssp             HSCG--GGEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             hhcC--CEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence            3322  2333345678999999988888776544

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.2e-18  Score=123.58  Aligned_cols=169  Identities=21%  Similarity=0.253  Sum_probs=105.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcC-----CCCCH-------------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEG-----KIVPS-------------   70 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-------------   70 (196)
                      .++|+|+|++||||||+++.|. .+|+.+++.|.+.+.....+.+....+.+.....     ..+..             
T Consensus         3 k~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~   81 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEE   81 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHH
Confidence            4799999999999999999987 5699999999998877666555544444433211     11111             


Q ss_pred             -----HHHHHHHHHHHh----cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           71 -----EVTVSLIQKEME----SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        71 -----~~~~~~i~~~l~----~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                           ...++.+.+.+.    ......++++. |      +.+...+...++.+|++++|++++.+|+.+|+    ..+.
T Consensus        82 ~~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~------ll~e~~~~~~~~~iI~V~a~~e~r~~R~~~R~----~~~~  150 (208)
T d1vhta_          82 KNWLNALLHPLIQQETQHQIQQATSPYVLWVV-P------LLVENSLYKKANRVLVVDVSPETQLKRTMQRD----DVTR  150 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-T------TTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----TCCH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhcCCcceee-e------ecccccccccCCEEEEEeCCHHHHHHHHHHhh----hhhH
Confidence                 122333333332    22334444443 2      12222223357888999999999999999983    2244


Q ss_pred             HHHHHHHHHHHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhhhhc
Q 029287          142 DTVRKRLQVFKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALKLVT  195 (196)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~~~~  195 (196)
                      +.+..+.....+.  .....+++    ++|+++++.+++.+++.++..+++.+.
T Consensus       151 ~~~~~~~~~Q~~~--~~k~~~aD----~vI~N~~~le~l~~~v~~l~~~~l~~~  198 (208)
T d1vhta_         151 EHVEQILAAQATR--EARLAVAD----DVIDNNGAPDAIASDVARLHAHYLQLA  198 (208)
T ss_dssp             HHHHHHHHHSCCH--HHHHHHCS----EEEECSSCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCH--HHHHHhCC----EEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence            5455444332111  11222232    578999999999999999888887653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.78  E-value=5.2e-18  Score=119.54  Aligned_cols=177  Identities=15%  Similarity=0.115  Sum_probs=95.2

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCC-----ceechhHHHHHHHhcCChh-hH-HHHHHhhcCCCCCHHHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGL-----THLSAGELLRREIASNSEY-GT-TILNTIKEGKIVPSEVTVSLIQKEM   81 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~-----~~i~~~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~~~~~i~~~l   81 (196)
                      |++|+|+|++||||||+++.|++.++.     .+++.++..+......... .. ....................+.+..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEA   80 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHH
Confidence            468889999999999999999999843     3455566554432221110 00 0000000000000011122233333


Q ss_pred             hcCCCCcEEEeCCCCCHH-------HHHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-CCCCCCcHHHHHHHHHHHHh
Q 029287           82 ESSDSKKFLIDGFPRSEE-------NRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-EGRVDDNIDTVRKRLQVFKA  153 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~-------~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-~~~~~~~~~~~~~~~~~~~~  153 (196)
                      .......++++++.....       ....+..  ...|+.++||++|++++.+|+.+|. ..+.....+.+.++...+..
T Consensus        81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~~~~~~  158 (194)
T d1nksa_          81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVIT--EINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFAR  158 (194)
T ss_dssp             HHTCSSEEEEEECSEEEETTEEEESSCHHHHH--HHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHH
T ss_pred             HHhCCCcEEEEccCchHHHHHHHHhHHHHHHh--hhccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Confidence            333445556665442100       0011111  1269999999999999999998774 23444455555554444443


Q ss_pred             chHhHHHHHHhcCcEEEE-eCCCCHhHHHHHHHHHH
Q 029287          154 LNLPVINYYARRGKLYTI-NAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~I-~~~~~~~~v~~~i~~~i  188 (196)
                      ........+. ..++.+| +++++++++.++|.+.|
T Consensus       159 ~~~~~~~~~~-~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         159 YAATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHh
Confidence            3332222222 3345444 57899999999988765

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.76  E-value=1.7e-17  Score=116.40  Aligned_cols=173  Identities=13%  Similarity=0.175  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHh-c
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG-----LTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEME-S   83 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~-~   83 (196)
                      ++|+|+|+|||||||+++.|+++|+     ...+..++..+..........  ..+.+..................+. .
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS--DRDQMRKMDPETQKRIQKMAGRKIAEM   79 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS--SGGGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhh--hhhhhhhhhchhhHHHHHHHHHHHHHH
Confidence            5899999999999999999999884     334556666554422111000  0000000000000011111111111 1


Q ss_pred             CCCCcEEEeCCCCCHHH-------HHHHHHHhCCCCcEEEEeecChHHHHHHHhhcc-CCCCCCcHHHHHHHHHHHHhch
Q 029287           84 SDSKKFLIDGFPRSEEN-------RAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRN-EGRVDDNIDTVRKRLQVFKALN  155 (196)
Q Consensus        84 ~~~~~~iid~~~~~~~~-------~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~-~~~~~~~~~~~~~~~~~~~~~~  155 (196)
                      .....+++|+++....+       ...+.  ....|+.+|||+++++++.+|+.++. .++.....+.++.....+....
T Consensus        80 ~~~~~vl~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (190)
T d1khta_          80 AKESPVAVDTHSTVSTPKGYLPGLPSWVL--NELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAA  157 (190)
T ss_dssp             HTTSCEEEECCSEEEETTEEEESSCHHHH--HHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHH
T ss_pred             hCCCeEEECCcccchHHHHHHHhhhhhhh--hhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHHHHHHHHHHHH
Confidence            23567788887643110       01111  11379999999999999999998764 3444555555544333333332


Q ss_pred             HhHHHHHHhcCcEE-EEeCCCCHhHHHHHHHHHH
Q 029287          156 LPVINYYARRGKLY-TINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       156 ~~~~~~~~~~~~~~-~I~~~~~~~~v~~~i~~~i  188 (196)
                      ..+. .+. ..+++ ++++++++|++.++|.+.|
T Consensus       158 ~~~~-~~~-~~~~~~v~~~~~~~ee~~~ei~~~l  189 (190)
T d1khta_         158 MSYG-VLT-GATVKIVQNRNGLLDQAVEELTNVL  189 (190)
T ss_dssp             HHHH-HHH-CCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHH-Hhh-CCCeEEEECCCCCHHHHHHHHHHHh
Confidence            2222 222 23444 4567899999999988766

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.75  E-value=3.8e-17  Score=113.21  Aligned_cols=161  Identities=16%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      .|.|+|+|+|||||||+|+.|+++||+.+++.++.++.........      ................+.....   ..+
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~   74 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD------EEYDCPILDEDRVVDELDNQMR---EGG   74 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCC------SSSSCCCBCHHHHHHHHHHHHH---HCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchh------HHhhhhhHHHHHHHHHhhhhhh---cCC
Confidence            3567789999999999999999999999999998887642221110      0111122233333333333333   222


Q ss_pred             EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH-HHHHHHhchHhHHHHHHhcCc
Q 029287           89 FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK-RLQVFKALNLPVINYYARRGK  167 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  167 (196)
                      ...+++.....     .   ....+.++||++|++++.+|+.+|...    .....+. ....+.....+....|. ...
T Consensus        75 ~~~~~~~~~~~-----~---~~~~~~~i~l~~~~~~~~~Rl~~r~~~----~~~~~~~~~~~~~~~~~~e~~~~~~-~~~  141 (173)
T d1rkba_          75 VIVDYHGCDFF-----P---ERWFHIVFVLRTDTNVLYERLETRGYN----EKKLTDNIQCEIFQVLYEEATASYK-EEI  141 (173)
T ss_dssp             EEEECSCCTTS-----C---GGGCSEEEEEECCHHHHHHHHHHTTCC----HHHHHHHHHHHHTTHHHHHHHHHSC-GGG
T ss_pred             cccchhHHHHH-----H---HhcCCCcceecCCHHHHHHHHHhcCCC----cccccccchhhhHHHHHHHHHHHhh-hcc
Confidence            33444332100     0   114577899999999999999998311    1111111 12222222222233332 335


Q ss_pred             EEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          168 LYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       168 ~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      ++.++++ +++++.+.+.++++.+-
T Consensus       142 ~i~~~~~-~~~~~~~~i~~Ii~~i~  165 (173)
T d1rkba_         142 VHQLPSN-KPEELENNVDQILKWIE  165 (173)
T ss_dssp             EEEEECS-SHHHHHHHHHHHHHHHH
T ss_pred             EEEECCC-CHHHHHHHHHHHHHHHH
Confidence            5666655 66777776666665543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.73  E-value=5.4e-18  Score=116.80  Aligned_cols=155  Identities=15%  Similarity=0.216  Sum_probs=85.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcEEE
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFLI   91 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~ii   91 (196)
                      |+|+|+|||||||+++.|++++|+.+++.|.++++...  ..    +...........-......+...+... ...++.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g--~~----i~~~~~~~g~~~~r~~e~~v~~~l~~~-~~~v~~   75 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QK----VSEIFEQKRENFFREQEQKMADFFSSC-EKACIA   75 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SC----HHHHHHHHCHHHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHh--hh----hhhHHHhhhhccchhhhhhhchhhhhc-cccccc
Confidence            77889999999999999999999999999988766432  11    111121111111111223334444322 222322


Q ss_pred             eCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccC-CCCC-CcHHHHHHHHHHHHhchHhHHHHHHhcCcEE
Q 029287           92 DGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNE-GRVD-DNIDTVRKRLQVFKALNLPVINYYARRGKLY  169 (196)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (196)
                      .+-  +....     ......+++|||++|++++.+|+..+.. .|+. .+...+++   .|.+. .+.   |...+. +
T Consensus        76 ~~g--~~~~~-----~~l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~---l~~~r-~~~---Y~~~ad-~  140 (161)
T d1viaa_          76 TGG--GFVNV-----SNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKK---LYNER-LSK---YEQKAN-F  140 (161)
T ss_dssp             CCT--TGGGS-----TTGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHH---HHHHH-HHH---HHHHCS-E
T ss_pred             ccc--chhhH-----HHHHhCCeEEEeccchHHHHHHHccccccccccccCchHHHH---HHHHH-HHH---HHhhCC-E
Confidence            221  11111     1112457889999999999999976632 2221 12222222   22222 111   222222 4


Q ss_pred             EEeC-CCCHhHHHHHHHHHH
Q 029287          170 TINA-VGTVDEIFEQVRAVF  188 (196)
Q Consensus       170 ~I~~-~~~~~~v~~~i~~~i  188 (196)
                      +||. +.+++++.++|.+.+
T Consensus       141 ~Idt~~~s~eei~~~I~~~i  160 (161)
T d1viaa_         141 ILNIENKNIDELLSEIKKVI  160 (161)
T ss_dssp             EEECTTCCHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHh
Confidence            5775 479999999987765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.71  E-value=3.2e-17  Score=113.59  Aligned_cols=165  Identities=11%  Similarity=0.117  Sum_probs=91.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCc
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKK   88 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~   88 (196)
                      ..+|+|+|||||||||+++.|++.++..++..++.++.................    ..............+.  .+..
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~   75 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELL----ALTWKNITDLTVNFLL--AQND   75 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHH----HHHHHHHHHHHHHHHH--TTCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHH----HHHHHHHHHHHHHHHh--cCCC
Confidence            357889999999999999999999988776666665543222211110000000    0001122333333333  3567


Q ss_pred             EEEeCCCCCHHHHHHHH---HHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhc
Q 029287           89 FLIDGFPRSEENRAAFE---RIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARR  165 (196)
Q Consensus        89 ~iid~~~~~~~~~~~~~---~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
                      +++++............   ......+..+++|++|++++.+|+.+|...... ....+    ..+.+.    ...  ..
T Consensus        76 ~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~-~~~~~----~~~~~~----~~~--~~  144 (176)
T d2bdta1          76 VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQM-GERCL----ELVEEF----ESK--GI  144 (176)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-----CGGGG----HHHHHH----HHT--TC
T ss_pred             cccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhh-hHHHH----HHHHHH----HhC--CC
Confidence            78887766544433222   223444566799999999999999998322111 11111    122211    111  11


Q ss_pred             CcEEEEeC-CCCHhHHHHHHHHHHHh
Q 029287          166 GKLYTINA-VGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       166 ~~~~~I~~-~~~~~~v~~~i~~~i~~  190 (196)
                      ...++||+ +.+++++.+.|++.++.
T Consensus       145 ~~~~~id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         145 DERYFYNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             CTTSEEECSSSCGGGHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhc
Confidence            23345565 46889998888887743

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.6e-17  Score=118.55  Aligned_cols=82  Identities=5%  Similarity=0.016  Sum_probs=51.5

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCCC-CcHHHHHHHHHHHHhchHhH----HHHHHhcCcEEEEeCCCCHhHHHHHH
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVD-DNIDTVRKRLQVFKALNLPV----INYYARRGKLYTINAVGTVDEIFEQV  184 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~I~~~~~~~~v~~~i  184 (196)
                      +.||++||||+|++.+.+|+.+|...... .+.+.++...+.|.......    .....++.++++||++.+.+++.+.+
T Consensus       148 ~~pdl~i~Ld~~~~~~~~Ri~~r~r~~E~~i~~~yl~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~iID~~~d~~~~~~~~  227 (241)
T d2ocpa1         148 ITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQ  227 (241)
T ss_dssp             HCCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHH
T ss_pred             cccceEEEecCCHHHHHHHHhcccchhhhcCCHHHHHHHHHHHHHHHHhhhhhhhHhhcCCCCEEEEECCCchhhhHHHH
Confidence            57999999999999999999999432222 14566655555555431110    00112356889999998866665554


Q ss_pred             HHHHHhh
Q 029287          185 RAVFAAL  191 (196)
Q Consensus       185 ~~~i~~~  191 (196)
                      .+.++++
T Consensus       228 ~~i~~~I  234 (241)
T d2ocpa1         228 EDLMREV  234 (241)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=3.6e-17  Score=116.03  Aligned_cols=162  Identities=18%  Similarity=0.210  Sum_probs=82.0

Q ss_pred             cCCCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCC----CHHHHHHHHHH
Q 029287            4 KGGKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIV----PSEVTVSLIQK   79 (196)
Q Consensus         4 ~~~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~i~~   79 (196)
                      +..++|++|+|+|++||||||+++.|+++++...+....+- .  .........+..........    ...........
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~~~ep~~-~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVE-K--WRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQS   80 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHH-H--HTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEEEEEecC-c--cccccchhHhhhhccccccccchHHHHHHHHHHHH
Confidence            44578899999999999999999999999865443211110 0  00000000001000000000    00001111111


Q ss_pred             HHhcCCCCcEEEeCCCCC----------------H-------HHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCC
Q 029287           80 EMESSDSKKFLIDGFPRS----------------E-------ENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGR  136 (196)
Q Consensus        80 ~l~~~~~~~~iid~~~~~----------------~-------~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~  136 (196)
                      ..........+.++....                .       .....+...+...||++||||+|++++.+|+.+|  +|
T Consensus        81 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdl~i~Ld~~~~~~~~Ri~~R--~r  158 (197)
T d2vp4a1          81 HTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQR--AR  158 (197)
T ss_dssp             HHCCCCSSEEEEESCHHHHHHTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHH--CC
T ss_pred             HHHHhcccccccCceeecchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcccccchhheeecCHHHHHHHHHHh--Cc
Confidence            222222233344443211                0       0111222234578999999999999999999998  44


Q ss_pred             CCC---cHHHHHHHHHHHHhchHhHHHHHH--hcCcEEEEeCC
Q 029287          137 VDD---NIDTVRKRLQVFKALNLPVINYYA--RRGKLYTINAV  174 (196)
Q Consensus       137 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~I~~~  174 (196)
                      ..+   +.+.++.....|.+...    .+.  ...++++||++
T Consensus       159 ~~E~~i~~~yl~~l~~~Y~~~~~----~~~~~~~~~v~~iD~n  197 (197)
T d2vp4a1         159 SEESCVPLKYLQELHELHEDWLI----HQRRPQSCKVLVLDAD  197 (197)
T ss_dssp             GGGTTCCHHHHHHHHHHHHHHHT----SCCSSCCCEEEEEECC
T ss_pred             hhhhcCCHHHHHHHHHHHHHHHH----HHHhcCCCCEEEEcCC
Confidence            322   45555554455554311    111  24578888875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.3e-16  Score=110.19  Aligned_cols=152  Identities=16%  Similarity=0.251  Sum_probs=83.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCCCcEE
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKE-GKIVPSEVTVSLIQKEMESSDSKKFL   90 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~l~~~~~~~~i   90 (196)
                      |+|+|++||||||+++.|++++|+.+++.|..+.+...  ..    +.+.... |.........+.+...+..  ...++
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g--~~----i~~~~~~~g~~~~r~~e~~~~~~~~~~--~~~vi   75 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RS----IADIFATDGEQEFRRIEEDVVRAALAD--HDGVL   75 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SC----HHHHHHHHCHHHHHHHHHHHHHHHHHH--CCSEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhh--hh----hhhhhhhhhHHHHHHHHhhhhhhcccc--ccccc
Confidence            55679999999999999999999999999988765422  11    2222211 1111122223334444443  23333


Q ss_pred             EeCCC--CCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCC----CCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           91 IDGFP--RSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRV----DDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        91 id~~~--~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      ..+-.  .....+    ..+  ....+|||++|++++.+|+.++. .|.    .+..+.+++   .|.+. .   ..|.+
T Consensus        76 ~~gg~~~~~~~~~----~~l--~~~~~I~L~~~~~~~~~R~~~~~-~Rpll~~~~~~e~~~~---l~~eR-~---~~Y~~  141 (165)
T d2iyva1          76 SLGGGAVTSPGVR----AAL--AGHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRA---LMAKR-A---PLYRR  141 (165)
T ss_dssp             ECCTTGGGSHHHH----HHH--TTSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHH---HHHHH-H---HHHHH
T ss_pred             ccccccccccccc----ccc--cccceeeeeccchhhhhcccccc-cchhccCccHHHHHHH---HHHHH-H---HHHHh
Confidence            33221  122211    122  34556999999999999997552 332    112233332   22222 1   12222


Q ss_pred             cCcEEEEeCC-CCHhHHHHHHHH
Q 029287          165 RGKLYTINAV-GTVDEIFEQVRA  186 (196)
Q Consensus       165 ~~~~~~I~~~-~~~~~v~~~i~~  186 (196)
                      .+. ++||++ .+++++.++|.+
T Consensus       142 ~ad-~~Idt~~~s~~ei~~~Ii~  163 (165)
T d2iyva1         142 VAT-MRVDTNRRNPGAVVRHILS  163 (165)
T ss_dssp             HCS-EEEECSSSCHHHHHHHHHT
T ss_pred             hCC-EEEECCCCCHHHHHHHHHh
Confidence            222 467764 589998887654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.7e-17  Score=117.95  Aligned_cols=83  Identities=12%  Similarity=0.149  Sum_probs=57.3

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCC-CCcHHHHHHHHHHHHhchHhH----HHHHHhcCcEEEEeCCCCHhHHHHHH
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRV-DDNIDTVRKRLQVFKALNLPV----INYYARRGKLYTINAVGTVDEIFEQV  184 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~I~~~~~~~~v~~~i  184 (196)
                      +.||++||||+||+.+.+|+.+|..... ..+.+.+++..+.|.......    ........++++||++.+++++.++|
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~i  230 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESL  230 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHH
T ss_pred             CCCceeeeeccCHHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHHH
Confidence            5799999999999999999998842221 124555555545555431110    01112346889999999999999999


Q ss_pred             HHHHHhhh
Q 029287          185 RAVFAALK  192 (196)
Q Consensus       185 ~~~i~~~~  192 (196)
                      .+.|+.++
T Consensus       231 ~~~i~~~l  238 (241)
T d1p5zb_         231 VEKVKEFL  238 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887765

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.66  E-value=6.6e-15  Score=106.04  Aligned_cols=40  Identities=30%  Similarity=0.443  Sum_probs=37.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE   47 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~   47 (196)
                      ++++|+|.|||||||||+|+.|+++||+.|++.|+++|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~   41 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   41 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            3468999999999999999999999999999999999964

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.65  E-value=7.2e-16  Score=104.67  Aligned_cols=135  Identities=20%  Similarity=0.276  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH-hCCceechhHHHHHHHhcCChhh----HHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN-YGLTHLSAGELLRREIASNSEYG----TTILNTIKEGKIVPSEVTVSLIQKEMESS   84 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~-~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~i~~~l~~~   84 (196)
                      .+|+|.|+|||||||+++.|.+. .+..+++.+++.+..........    .......       .......+...+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~   75 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV-------TGMQFDTAKSILYGG   75 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHH-------HHHHHHHHHHHHTSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHH-------HHHHHHHHHHHHHhh
Confidence            47888999999999999988765 47888998877655432222111    0000000       112233344444433


Q ss_pred             -CCCcEEEeCCCCCHHHHH---HHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287           85 -DSKKFLIDGFPRSEENRA---AFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus        85 -~~~~~iid~~~~~~~~~~---~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~  154 (196)
                       ....+|+|+.......+.   .+..... .+..+|+|++|++++.+|+.+|  ++.....+.++++.+.|.++
T Consensus        76 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~  146 (152)
T d1ly1a_          76 DSVKGVIISDTNLNPERRLAWETFAKEYG-WKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREY  146 (152)
T ss_dssp             SSCCEEEECSCCCSHHHHHHHHHHHHHHT-CEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHHHH
T ss_pred             ccCCCcccccccCCHHHHHHHHHhhhhhc-cchhhhhcCCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHHHhh
Confidence             234577887666644443   3333344 3455699999999999999988  33344566776665555544

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.64  E-value=1.2e-15  Score=105.86  Aligned_cols=163  Identities=13%  Similarity=0.086  Sum_probs=83.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechh-HHHHHHHhcCChhhHHHHHHhhcCCCCC--H--HHHHHHH---HHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG-ELLRREIASNSEYGTTILNTIKEGKIVP--S--EVTVSLI---QKE   80 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~--~~~~~~i---~~~   80 (196)
                      +++|+|.|+|||||||+++.|++.++...+..+ +.+....... .........+..+....  .  .......   ...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLK-MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGG-GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhcccccc-ccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            358889999999999999999999987665432 3332221100 00000000001111110  0  0111111   111


Q ss_pred             HhcCCCCcEEEeC-CCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHH
Q 029287           81 MESSDSKKFLIDG-FPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVI  159 (196)
Q Consensus        81 l~~~~~~~~iid~-~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (196)
                      +.. ....++++. +.........+.......+..+|+|+||++++.+|...|. ++..   .....+...+..      
T Consensus        82 ~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~-~~~~---~~~~~~~~~~~~------  150 (178)
T d1qhxa_          82 MAR-AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG-DRVA---GMAAKQAYVVHE------  150 (178)
T ss_dssp             HHH-TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS-SSCT---THHHHHTTGGGT------
T ss_pred             HHh-hccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcC-Ccch---hhhhhhhhhhhc------
Confidence            222 233344443 4444444444444455566777999999999999999883 2222   221111111111      


Q ss_pred             HHHHhcCcEEEEeCC-CCHhHHHHHHHHH
Q 029287          160 NYYARRGKLYTINAV-GTVDEIFEQVRAV  187 (196)
Q Consensus       160 ~~~~~~~~~~~I~~~-~~~~~v~~~i~~~  187 (196)
                          ....-++||++ .+++++.++|.+.
T Consensus       151 ----~~~~dl~IDts~~s~ee~a~~I~~~  175 (178)
T d1qhxa_         151 ----GVEYDVEVDTTHKESIECAWAIAAH  175 (178)
T ss_dssp             ----TCCCSEEEETTSSCHHHHHHHHHTT
T ss_pred             ----CCCCCEEEECCCCCHHHHHHHHHHh
Confidence                11223578875 5899998887653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.60  E-value=2.7e-15  Score=103.94  Aligned_cols=159  Identities=16%  Similarity=0.170  Sum_probs=87.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceech-hHHHHHHHhcCCh-----h-hHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA-GELLRREIASNSE-----Y-GTTILNTIKEGKIVPSEVTVSLIQKEM   81 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~-~~~~~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~~~i~~~l   81 (196)
                      ..+|+|.|+|||||||+++.|++.+|..++.. ++.++........     . .......        .......+...+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   75 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI--------MQIAADVAGRYA   75 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHH--------HHHHHHHHHHHH
Confidence            46899999999999999999999998776543 2344433221110     0 0000000        011112222222


Q ss_pred             hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHH
Q 029287           82 ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINY  161 (196)
Q Consensus        82 ~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (196)
                      .  ....+|+++........ .+.  ....+..++||+++++++.+|+.+|.... ....+.+......+....      
T Consensus        76 ~--~~~~vi~~~~~~~~~~~-~~~--~~~~~~~~i~l~~~~e~~~~R~~~R~~~~-~~~~~~~~~~~~~~~~~~------  143 (176)
T d1zp6a1          76 K--EGYFVILDGVVRPDWLP-AFT--ALARPLHYIVLRTTAAEAIERCLDRGGDS-LSDPLVVADLHSQFADLG------  143 (176)
T ss_dssp             H--TSCEEEECSCCCTTTTH-HHH--TTCSCEEEEEEECCHHHHHHHHHTTCTTS-CCCHHHHHHHHHHTTCCG------
T ss_pred             h--cCCCeEecccccHHHHH-HHH--hcccccccccCCCCHHHHHHHHHhCCCcc-ccchhhHHHHHHHHhhcc------
Confidence            2  34566777655432211 111  12356677999999999999999884222 223444443333332221      


Q ss_pred             HHhcCcEEEEe-CCCCHhHHHHHHHHHHHh
Q 029287          162 YARRGKLYTIN-AVGTVDEIFEQVRAVFAA  190 (196)
Q Consensus       162 ~~~~~~~~~I~-~~~~~~~v~~~i~~~i~~  190 (196)
                        .... ++|| ++.+++++.++|.+.++.
T Consensus       144 --~~~~-~~idt~~~~~ee~~~~I~~~l~~  170 (176)
T d1zp6a1         144 --AFEH-HVLPVSGKDTDQALQSAINALQS  170 (176)
T ss_dssp             --GGGG-GEEECTTCCTTTTTTTTHHHHHH
T ss_pred             --cccC-EEEECCCCCHHHHHHHHHHHHHc
Confidence              1112 2344 567899998888877754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.4e-16  Score=110.87  Aligned_cols=28  Identities=50%  Similarity=0.799  Sum_probs=25.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLT   36 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~   36 (196)
                      |++|+|+|++||||||+++.|++.++..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            8999999999999999999999998643

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3.1e-14  Score=102.28  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=36.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREI   48 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~   48 (196)
                      +++|+|.|||||||||+|+.|+++||+.|++.|+++|...
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a   42 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA   42 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            4589999999999999999999999999999999998643

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=7.9e-15  Score=100.32  Aligned_cols=158  Identities=12%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcEE
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFL   90 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~i   90 (196)
                      .|+|+||+||||||+++.|++++|+.+++.+.....................      .............. .....++
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~   76 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEE------GFRDREEKVINELT-EKQGIVL   76 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHH------HHHHHHHHHHHHHH-TSSSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhh------HHHHHHHHHHHhhc-cccceEe
Confidence            5788999999999999999999999999988776554222221111110000      00111111111211 2233333


Q ss_pred             EeCCCC--CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCC----CCCcHHHHHHHHHHHHhchHhHHHHHHh
Q 029287           91 IDGFPR--SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGR----VDDNIDTVRKRLQVFKALNLPVINYYAR  164 (196)
Q Consensus        91 id~~~~--~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
                      ......  .......+.     .....+++++++..+..|+.++....    .......+...   +...    ...|.+
T Consensus        77 ~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~y~~  144 (169)
T d1kaga_          77 ATGGGSVKSRETRNRLS-----ARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEAL---ANER----NPLYEE  144 (169)
T ss_dssp             ECCTTGGGSHHHHHHHH-----HHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHH---HHHH----HHHHHH
T ss_pred             eccchhhhhhhhhHHhh-----hcceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHH---HHHh----hhhhhc
Confidence            333222  122222222     23677999999999999987763111    11123332222   2221    111222


Q ss_pred             cCcEEEEeC-CCCHhHHHHHHHHHH
Q 029287          165 RGKLYTINA-VGTVDEIFEQVRAVF  188 (196)
Q Consensus       165 ~~~~~~I~~-~~~~~~v~~~i~~~i  188 (196)
                      ... ++||+ +.+++++.++|.+.|
T Consensus       145 ~~d-~~Idt~~~s~ee~v~~Ii~~l  168 (169)
T d1kaga_         145 IAD-VTIRTDDQSAKVVANQIIHML  168 (169)
T ss_dssp             HCS-EEC-----CHHHHHHHHHHHH
T ss_pred             cCC-EEEECCCCCHHHHHHHHHHHh
Confidence            222 45775 458999999987765

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=7.6e-14  Score=96.64  Aligned_cols=101  Identities=22%  Similarity=0.245  Sum_probs=75.3

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSD   85 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~   85 (196)
                      .+.|.+|++.|+|||||||+++.|.+.+++.+++.|++...                        ......+...+..  
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~~--   64 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAALRQ--   64 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHHHHT--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHHHHC--
Confidence            35678999999999999999999999999999998765321                        1223444455553  


Q ss_pred             CCcEEEeCCCCCHHHHHHHHH---HhCCCCcEEEEeecChHHHHHHHhhcc
Q 029287           86 SKKFLIDGFPRSEENRAAFER---IMGAEPDIVLFFDCPEEEMVNRVLNRN  133 (196)
Q Consensus        86 ~~~~iid~~~~~~~~~~~~~~---~~~~~p~~~i~ld~~~~~~~~Rl~~r~  133 (196)
                      +..+|+|.......++..+..   ..+.. -.+++|++|.+++.+|...|.
T Consensus        65 g~~vIiD~t~~~~~~R~~~~~~a~~~~~~-~~~v~l~~~~e~~~~Rn~~R~  114 (172)
T d1yj5a2          65 GKRVVIDNTNPDVPSRARYIQCAKDAGVP-CRCFNFCATIEQARHNNRFRE  114 (172)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHHHHHHTCC-EEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCceeeCcCCCHHHHHHHHHHHHhcCCC-EEEEEeCCCHHHHHHHHHHhc
Confidence            567899998887766655543   34433 345899999999999999884

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5.9e-15  Score=106.24  Aligned_cols=166  Identities=18%  Similarity=0.247  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH------------HhcCCh-----hhHHHHHHhhcCCCC---C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE------------IASNSE-----YGTTILNTIKEGKIV---P   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~------------~~~~~~-----~~~~~~~~l~~~~~~---~   69 (196)
                      -+++|.||+||||||++++++   |+...+.|++....            +...++     ...+..+++..+...   +
T Consensus        27 ei~~liGpsGsGKSTLl~~i~---Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~  103 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIA---GLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK  103 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC--------------------
T ss_pred             CEEEEECCCCChHHHHHHHHh---cCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCC
Confidence            488999999999999999999   88877776653111            111111     122233333322211   1


Q ss_pred             HHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .....+.+.+.++.   ......-...++.+++|++++++++...|++ +++|+|+..+.-.....    ..+....+.+
T Consensus       104 ~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~i-lllDEPts~LD~~~~~~----i~~~l~~l~~  178 (232)
T d2awna2         104 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV-FLLDEPLSNLDAALRVQ----MRIEISRLHK  178 (232)
T ss_dssp             -CHHHHHHHHHHHHC---------------------CHHHHHHTCCSE-EEEESTTTTSCHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-EEEcCCCCCCCHHHHHH----HHHHHHHHHH
Confidence            12222333444443   2222222445667899999999999999999 88999992221111110    0000000111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .   ...+.+|+...+..++++..++.   |...++++++++.
T Consensus       179 ~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~  221 (232)
T d2awna2         179 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  221 (232)
T ss_dssp             HSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence            0   12566788888888888655543   5567889998764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.46  E-value=7.6e-15  Score=105.37  Aligned_cols=166  Identities=20%  Similarity=0.261  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------HHHHhcCCh-----hhHHHHHHhhcC---CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------RREIASNSE-----YGTTILNTIKEG---KIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------~~~~~~~~~-----~~~~~~~~l~~~---~~~~   69 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+.            ++.+....+     ...+..+++..+   ....
T Consensus        27 e~~~liGpsGaGKSTll~~l~---Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~  103 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIA---GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK  103 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHH---TSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhcccc
Confidence            378999999999999999999   88776666552            111111111     011122222111   0111


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH--
Q 029287           70 SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR--  147 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~--  147 (196)
                      .......+.+.+........-...++.++.|++++++++...|++ ++||+|+..+.-.....    ..+-...+.++  
T Consensus       104 ~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~i-LllDEPts~LD~~~~~~----i~~~l~~l~~~~g  178 (229)
T d3d31a2         104 DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI-LLLDEPLSALDPRTQEN----AREMLSVLHKKNK  178 (229)
T ss_dssp             CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE-EEEESSSTTSCHHHHHH----HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCc-eeecCCCcCCCHHHHHH----HHHHHHHHHhcCC
Confidence            122233333334433222222455667799999999999999999 88999993222211111    00001111111  


Q ss_pred             -HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          148 -LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                       ...+.+|+...+..++++..++.   |.+.++++++++.
T Consensus       179 ~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~  218 (229)
T d3d31a2         179 LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK  218 (229)
T ss_dssp             CEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             cEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence             12567788888888887544442   5566788888754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=6.5e-14  Score=101.07  Aligned_cols=166  Identities=17%  Similarity=0.239  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH------------HhcCChh-----hHHHHHHhhcCC---CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE------------IASNSEY-----GTTILNTIKEGK---IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~------------~~~~~~~-----~~~~~~~l~~~~---~~~   69 (196)
                      -+++|.||+||||||+++++.   |+...+.|.++-..            +...++.     ..++.+++..+.   ..+
T Consensus        33 e~~~liGpsGaGKSTLl~~i~---Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~  109 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIA---GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP  109 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC
T ss_pred             CEEEEECCCCChHHHHHHHHH---cCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCC
Confidence            478999999999999999999   88777766553211            1111111     111334443322   233


Q ss_pred             HHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHH
Q 029287           70 SEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRK  146 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~  146 (196)
                      .....+.+.+.++..+-..   .-...++.++.|++++++++...|++ ++||+|+.-+.-.....    ..+-...+.+
T Consensus       110 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~i-LllDEPts~LD~~~~~~----i~~ll~~l~~  184 (239)
T d1v43a3         110 KDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV-LLMDEPLSNLDAKLRVA----MRAEIKKLQQ  184 (239)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE-EEEESTTTTSCHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCc-eeecCCcccCCHHHHHH----HHHHHHHHHH
Confidence            3444444444444322211   12445677899999999999999999 88999992221111111    0000111111


Q ss_pred             H---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          147 R---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       147 ~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      .   ...+.+|+...+..+|++..++.   |.+.++++++++.
T Consensus       185 ~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~  227 (239)
T d1v43a3         185 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR  227 (239)
T ss_dssp             HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            1   12566788888888888654443   5567899999765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.44  E-value=2.4e-14  Score=103.23  Aligned_cols=164  Identities=18%  Similarity=0.227  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------HHhcCCh-----hhHHHHHHhhcCCC-CCHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------EIASNSE-----YGTTILNTIKEGKI-VPSEV   72 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------~~~~~~~-----~~~~~~~~l~~~~~-~~~~~   72 (196)
                      +++|.||+||||||++++|+   |+...+.|.+...            .+...++     ...++.+++..+.. .....
T Consensus        26 ~~~liGpnGaGKSTll~~i~---Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~  102 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIA---GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVE  102 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHH
T ss_pred             EEEEECCCCChHHHHHHHHH---cCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHH
Confidence            67889999999999999999   8776666655311            1111111     12235555555432 23333


Q ss_pred             HHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHH--
Q 029287           73 TVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKR--  147 (196)
Q Consensus        73 ~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~--  147 (196)
                      ..+.+.+.++..+-..   .-...++.++.|++++++++...|++ ++||+|+..+.-.....    ..+....+.++  
T Consensus       103 ~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i-lllDEPts~LD~~~~~~----i~~~i~~l~~~~g  177 (240)
T d2onka1         103 RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL-LLLDEPLSAVDLKTKGV----LMEELRFVQREFD  177 (240)
T ss_dssp             HHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS-BEEESTTSSCCHHHHHH----HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCc-eEecCccccCCHHHHHH----HHHHHHHHHHhcC
Confidence            3444555555432222   22344556799999999999999999 88999993222111111    00011111111  


Q ss_pred             -HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          148 -LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                       ...+.+|+...+..+|++..++.   |.+.++++++++
T Consensus       178 ~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             CCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence             13567788888888888655553   556788888864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.43  E-value=1.8e-12  Score=92.16  Aligned_cols=164  Identities=11%  Similarity=0.090  Sum_probs=87.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh----CC--ceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY----GL--THLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKE   80 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~----~~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~   80 (196)
                      .++++|.|+|.|||||||+++.|++++    +.  .+++. |.+|..+..+......-+....       ...... ...
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg-D~iR~~l~~~l~ys~~~r~~~~-------~r~~~~-a~~   92 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRNENI-------RRIAEV-AKL   92 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHHHHH-------HHHHHH-HHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc-hHHHHhhcCCCCCChhHHHHHH-------HHHHHH-HHH
Confidence            467899999999999999999999765    33  34554 4445443322211111111100       001111 111


Q ss_pred             HhcCCCCcEEEeCCCCCHHHHHHHHHHh--------CCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029287           81 MESSDSKKFLIDGFPRSEENRAAFERIM--------GAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFK  152 (196)
Q Consensus        81 l~~~~~~~~iid~~~~~~~~~~~~~~~~--------~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~  152 (196)
                      +. ..+..+|++........+..+...+        ...+-+.||++||.+++.+|-.++.      ......    ...
T Consensus        93 ~~-~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~------y~~~~~----~~~  161 (208)
T d1m7ga_          93 FA-DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGL------YKKARE----GVI  161 (208)
T ss_dssp             HH-HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCH------HHHHHH----TSS
T ss_pred             Hh-ccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccc------hhhhhc----Ccc
Confidence            11 2345567776666655555544432        2345667999999999999976651      000000    000


Q ss_pred             hchHhHHHHHHh-cCcEEEEeCC-CCHhHHHHHHHHHHHh
Q 029287          153 ALNLPVINYYAR-RGKLYTINAV-GTVDEIFEQVRAVFAA  190 (196)
Q Consensus       153 ~~~~~~~~~~~~-~~~~~~I~~~-~~~~~v~~~i~~~i~~  190 (196)
                      ......-..|.. ..+-++||++ .++++..++|.+.+.+
T Consensus       162 ~~~~gvd~~ye~P~~~dl~Idt~~~s~~e~~~~Ii~~L~~  201 (208)
T d1m7ga_         162 KEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  201 (208)
T ss_dssp             SSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             cceecccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHH
Confidence            000000001112 2344678754 5899998888877755

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.43  E-value=1.5e-14  Score=106.05  Aligned_cols=161  Identities=18%  Similarity=0.228  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------------------HHHHhcCCh-----hhHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------------------RREIASNSE-----YGTT   57 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------------------~~~~~~~~~-----~~~~   57 (196)
                      -+++|.|++||||||++++|+   |+...+.|.+.                           ++.+....+     ...+
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~t  105 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCIN---FLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMT  105 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHH---cCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchh
Confidence            488999999999999999999   77655544432                           122111111     0011


Q ss_pred             HHHHh----hcCCCCCHHHHHHHHHHHHhcCCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEeecChH------
Q 029287           58 ILNTI----KEGKIVPSEVTVSLIQKEMESSDSKKFLID----GFPRSEENRAAFERIMGAEPDIVLFFDCPEE------  123 (196)
Q Consensus        58 ~~~~l----~~~~~~~~~~~~~~i~~~l~~~~~~~~iid----~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~------  123 (196)
                      +.+.+    ......+.....+.+.+.+....-.....+    .++.++.|++.+++++...|++ +++|+|+.      
T Consensus       106 v~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~l-lilDEPT~gLD~~~  184 (258)
T d1b0ua_         106 VLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDV-LLFDEPTSALDPEL  184 (258)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSE-EEEESTTTTSCHHH
T ss_pred             cchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCE-EEeccccccCCHHH
Confidence            11211    111223334444445555553322221123    3555699999999999999998 88999991      


Q ss_pred             -HHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          124 -EMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       124 -~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                       ..+.++.++... .  ...      ..+.+|+...+..+|++..++.   |...++++++++.
T Consensus       185 ~~~i~~ll~~l~~-~--g~t------il~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~  239 (258)
T d1b0ua_         185 VGEVLRIMQQLAE-E--GKT------MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN  239 (258)
T ss_dssp             HHHHHHHHHHHHH-T--TCC------EEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHhhhhhcc-c--CCc------eEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence             111111111000 0  111      2577888888888888665554   6677899999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=99.43  E-value=6.4e-13  Score=100.19  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=32.9

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhc
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDD--NIDTVRKRLQVFKAL  154 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~--~~~~~~~~~~~~~~~  154 (196)
                      .+||++||||+|++++.+|+.+|  +|..+  +.+.++...+.|...
T Consensus       153 ~~pdliIyLd~~pe~~l~RI~~R--gR~~E~idl~YL~~L~~~Y~~L  197 (329)
T d1e2ka_         153 LPGTNIVLGALPEDRHIDRLAKR--QRPGERLDLAMLAAIRRVYGLL  197 (329)
T ss_dssp             CTTCEEEEEECCHHHHHHHHHHS--CCTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHc--CCCcCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999  44433  566666655666554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=4.7e-14  Score=101.97  Aligned_cols=164  Identities=17%  Similarity=0.266  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-----------------HHHHhcCChh-----hHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-----------------RREIASNSEY-----GTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-----------------~~~~~~~~~~-----~~~~~~~l~~~--   65 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+.                 |+.+...++.     ..++.+++..+  
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~---Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~  108 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVN---LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE  108 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHT---TSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHc---CCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHH
Confidence            488999999999999999999   87766655542                 2223322211     11122222110  


Q ss_pred             -CCCCHHHHHHHHHHHHh---cCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           66 -KIVPSEVTVSLIQKEME---SSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~---~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                       ...+.....+.+.+.++   ..+....-...++.++.|++++++++...|++ +++|+|+..+.-.....    ..+..
T Consensus       109 ~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~l-LllDEPt~~LD~~~~~~----i~~~l  183 (240)
T d3dhwc1         109 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV-LLCDEATSALDPATTRS----ILELL  183 (240)
T ss_dssp             TTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSE-EEEESGGGSSCHHHHHH----HHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCe-EEeccccccCCHHHhhH----HHHHH
Confidence             11222222333333333   32222112344556799999999999999999 88999992222111111    00011


Q ss_pred             HHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHH
Q 029287          142 DTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIF  181 (196)
Q Consensus       142 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~  181 (196)
                      ..+.+.   ...+.+|+...+..++++..++.   |...+++++++
T Consensus       184 ~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~  229 (240)
T d3dhwc1         184 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF  229 (240)
T ss_dssp             HHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred             HHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            112221   13567788888888887544443   44556666664

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.42  E-value=1.4e-14  Score=104.65  Aligned_cols=166  Identities=20%  Similarity=0.245  Sum_probs=96.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-----------------HhcCCh-----hhHHHHHHhhcC--
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-----------------IASNSE-----YGTTILNTIKEG--   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-----------------~~~~~~-----~~~~~~~~l~~~--   65 (196)
                      -+++|.||+||||||++++|+   |+...+.|+++...                 +....+     ...++.+++..+  
T Consensus        32 e~~~iiG~sGsGKSTll~~i~---gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~  108 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIA---GLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT  108 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHH---TSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred             CEEEEECCCCCcHHHHHHHHH---cCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhH
Confidence            478999999999999999999   88777766653211                 111111     111234444332  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcH
Q 029287           66 -KIVPSEVTVSLIQKEMESSDSKKF---LIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNI  141 (196)
Q Consensus        66 -~~~~~~~~~~~i~~~l~~~~~~~~---iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~  141 (196)
                       ...+.....+.+.+.++..+-..+   -...++.++.|++++++++...|++ +++|+|+..+.......    ..+-.
T Consensus       109 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~l-lllDEPt~~LD~~~~~~----i~~~i  183 (242)
T d1oxxk2         109 NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL-LLLDEPFSNLDARMRDS----ARALV  183 (242)
T ss_dssp             TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTTTSCGGGHHH----HHHHH
T ss_pred             hhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccc-eeecCCccCCCHHHHHH----HHHHH
Confidence             223444444555555554332221   1333555699999999999999999 88999992221111111    00001


Q ss_pred             HHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          142 DTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       142 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ..+.++   ...+.+|+...+..++++..++.   |...++++++++.
T Consensus       184 ~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~  231 (242)
T d1oxxk2         184 KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (242)
T ss_dssp             HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            111111   12467788888888887654443   5567789998764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.40  E-value=7.6e-14  Score=100.83  Aligned_cols=166  Identities=18%  Similarity=0.281  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHH------------------HHhcCCh-----hhHHHHHHhhcC-
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRR------------------EIASNSE-----YGTTILNTIKEG-   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~------------------~~~~~~~-----~~~~~~~~l~~~-   65 (196)
                      -+++|.||+||||||++++|+   |+...+.|++.-.                  .+....+     ...++.+++..+ 
T Consensus        30 e~~~liG~sGaGKSTll~~i~---gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~  106 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIA---GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL  106 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHh---cCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhH
Confidence            378999999999999999999   8776666555211                  1111111     011122222111 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCc
Q 029287           66 --KIVPSEVTVSLIQKEMESSDSKK---FLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDN  140 (196)
Q Consensus        66 --~~~~~~~~~~~i~~~l~~~~~~~---~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~  140 (196)
                        ...+.....+.+.+.++..+-..   .-...++.++.|++++++++...|++ +++|+|+.-+.......    ..+-
T Consensus       107 ~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~i-LllDEPt~~LD~~~~~~----i~~~  181 (240)
T d1g2912         107 KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV-FLMDEPLSNLDAKLRVR----MRAE  181 (240)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE-EEEECTTTTSCHHHHHH----HHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE-EEecCCCcccCHHHHHH----HHHH
Confidence              12233333344444444322222   11334556799999999999999999 88999993222221111    0001


Q ss_pred             HHHHHHH---HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          141 IDTVRKR---LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       141 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      ...+.++   ...+.+|+...+..+|++..++.   |...++++++++.
T Consensus       182 l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~  230 (240)
T d1g2912         182 LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK  230 (240)
T ss_dssp             HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            1111111   12567788888888887654443   5566788988754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=99.38  E-value=3.7e-12  Score=96.29  Aligned_cols=146  Identities=13%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCC----ceechhHHHHHHHhcCChhhHHHHHHhh-c--CCCCCHHH-H----H-
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGL----THLSAGELLRREIASNSEYGTTILNTIK-E--GKIVPSEV-T----V-   74 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~--~~~~~~~~-~----~-   74 (196)
                      .+++|.|+|+.||||||+++.|++.++.    .++...--.++.. .+++....+.+... .  +....... .    . 
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~EPm~yW~~~-~g~~~l~~iy~~~~~~~~~~~~~~~~~~~~~~~Q   83 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTL-FETDVISGIYDTQNRKQQGNLAVDDAALITAHYQ   83 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCHHHHHTS-SSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhccCCCeEEEeCchhhhccc-CCCchHHHHHHhHHhccccccchhhHHHHHHHHH
Confidence            4689999999999999999999998742    2222211122211 12233333322221 1  11111000 0    0 


Q ss_pred             -------HHHHHHHhc-----------CCCCcEEEeCCCCCHH----------------HHHHHHHHh--CCCCcEEEEe
Q 029287           75 -------SLIQKEMES-----------SDSKKFLIDGFPRSEE----------------NRAAFERIM--GAEPDIVLFF  118 (196)
Q Consensus        75 -------~~i~~~l~~-----------~~~~~~iid~~~~~~~----------------~~~~~~~~~--~~~p~~~i~l  118 (196)
                             ..+......           ..+..+|+|+++.+..                ....+...+  .+.||.+|||
T Consensus        84 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI~DR~~~Ss~~iF~~~~y~~G~ls~~~~~~l~~~~~~~~~pd~iIyL  163 (333)
T d1p6xa_          84 SRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVT  163 (333)
T ss_dssp             HHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCCCTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccccCCCeEEEECCcccchHHHHHHhhcCCCCCHHHHHHHHHHhcccCCCCEEEEE
Confidence                   001111110           1234578999875421                111111111  3568999999


Q ss_pred             ecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029287          119 DCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKAL  154 (196)
Q Consensus       119 d~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~  154 (196)
                      |+|++++.+|+.+|++..+..+.+.++.....|...
T Consensus       164 d~~pe~~l~RI~~RgR~~E~id~~YL~~L~~~Y~~l  199 (333)
T d1p6xa_         164 TLNVEEHIRRLRTRARIGEQIDITLIATLRNVYFML  199 (333)
T ss_dssp             ECCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHH
Confidence            999999999999994332223566776666666654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=4e-14  Score=102.60  Aligned_cols=163  Identities=18%  Similarity=0.202  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH-------------HHHHhcCCh-----hhHHHHHHhhc---CCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL-------------RREIASNSE-----YGTTILNTIKE---GKIV   68 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~-------------~~~~~~~~~-----~~~~~~~~l~~---~~~~   68 (196)
                      -+++|.||+||||||+.++|+   |+..++.|.+.             ++.+...++     ...+..+++..   -...
T Consensus        29 ei~glvG~nGaGKSTLl~~l~---G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~  105 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIIS---TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS  105 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHh---cCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCC
Confidence            589999999999999999999   87776655442             111111111     00011111110   0112


Q ss_pred             CHHHHHHHHHHHHhc---CCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHH
Q 029287           69 PSEVTVSLIQKEMES---SDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVR  145 (196)
Q Consensus        69 ~~~~~~~~i~~~l~~---~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~  145 (196)
                      ......+.+.+.++.   ......-+..++.++.|++.+++++...|.+ ++||+|+.-+.-.....       -.+.+.
T Consensus       106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~i-llLDEPt~gLD~~~~~~-------i~~~i~  177 (238)
T d1vpla_         106 SSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL-AILDEPTSGLDVLNARE-------VRKILK  177 (238)
T ss_dssp             CHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE-EEEESTTTTCCHHHHHH-------HHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCE-EEecCCCCCCCHHHHHH-------HHHHHH
Confidence            223333344444432   1111112556888899999999999999999 78999992211111000       001111


Q ss_pred             HH-----HHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHH
Q 029287          146 KR-----LQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQ  183 (196)
Q Consensus       146 ~~-----~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~  183 (196)
                      +.     ...+-+|+...+..+|++..++.   |...++++++.+.
T Consensus       178 ~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  223 (238)
T d1vpla_         178 QASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER  223 (238)
T ss_dssp             HHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence            10     11456677777777887654443   5567889998754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=99.36  E-value=5.9e-12  Score=95.11  Aligned_cols=43  Identities=19%  Similarity=0.191  Sum_probs=30.2

Q ss_pred             CCCcEEEEeecChHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhc
Q 029287          110 AEPDIVLFFDCPEEEMVNRVLNRNEGRVDD--NIDTVRKRLQVFKAL  154 (196)
Q Consensus       110 ~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~--~~~~~~~~~~~~~~~  154 (196)
                      .+||.+||||+|++++.+|+.+|  +|..+  +.+.++.....|...
T Consensus       158 ~~pdliIyLd~~pe~~l~RIk~R--gR~~E~i~~eYL~~L~~~Y~~L  202 (331)
T d1osna_         158 PPGTNLVVCTVSLPSHLSRVSKR--ARPGETVNLPFVMVLRNVYIML  202 (331)
T ss_dssp             CSCCEEEEEECCHHHHHHHCC--------CCCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHc--CCCCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999  44433  567777666666554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.35  E-value=5.5e-14  Score=102.06  Aligned_cols=156  Identities=21%  Similarity=0.257  Sum_probs=89.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH-------------HH--HhcCCh-----hhHHHHHHhhcCC--C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR-------------RE--IASNSE-----YGTTILNTIKEGK--I   67 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~-------------~~--~~~~~~-----~~~~~~~~l~~~~--~   67 (196)
                      -+++|.||+||||||+.++|+   |+...+.|.+..             ..  +...++     ...+..+++..+.  .
T Consensus        33 ei~~liGpnGaGKSTl~~~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~  109 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIA---GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR  109 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhc
Confidence            488999999999999999999   877666555421             11  111111     0112223222111  1


Q ss_pred             CCHHHH---HHHHHHHH-hcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH-----------HHHHHhhc
Q 029287           68 VPSEVT---VSLIQKEM-ESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE-----------MVNRVLNR  132 (196)
Q Consensus        68 ~~~~~~---~~~i~~~l-~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~-----------~~~Rl~~r  132 (196)
                      ......   ...+...+ ............++.+++|++.+++++...|++ ++||+|+.-           .++++.+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~l-LllDEPt~gLD~~~~~~i~~~i~~l~~~  188 (240)
T d1ji0a_         110 KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL-LMMDEPSLGLAPILVSEVFEVIQKINQE  188 (240)
T ss_dssp             CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE-EEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE-eeecCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            111111   11122211 111222223556888899999999999999999 889999921           11122111


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          133 NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                             ...      ..+.+|+...+..+|++..++.   |.+.++++++.+
T Consensus       189 -------g~t------il~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  228 (240)
T d1ji0a_         189 -------GTT------ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             -------TCC------EEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             -------CCE------EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence                   011      1466777777778887655543   556788999874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.35  E-value=6.8e-12  Score=87.33  Aligned_cols=161  Identities=12%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCh--------hhHHHHHHhhcCCCCCHH----------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSE--------YGTTILNTIKEGKIVPSE----------   71 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~----------   71 (196)
                      .+|+|.|||||||||+++.|.+.+.-.........| ....+..        ....+.+....+..+...          
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR-~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTR-APRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESS-CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeecc-CCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccc
Confidence            478899999999999999999987433332211111 1111111        123344444444332110          


Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029287           72 VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVF  151 (196)
Q Consensus        72 ~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~  151 (196)
                      .....+...+..  +..++++..+.+    ..........+..++++..|++.+.+|+.+|    ..++.+.+++|+..+
T Consensus        82 ~~~~~~~~~~~~--g~~~i~~~~~~g----~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~R----g~~~~e~I~~Rl~~~  151 (182)
T d1znwa1          82 TLAQPVRAAAAT--GVPVLIEVDLAG----ARAIKKTMPEAVTVFLAPPSWQDLQARLIGR----GTETADVIQRRLDTA  151 (182)
T ss_dssp             EEHHHHHHHHHH--TCCEEEECCHHH----HHHHHHHCTTSEEEEEECSCHHHHHHHHHTT----SCSCHHHHHHHHHHH
T ss_pred             cccchhhhhhhc--CCccccccccch----hhhhhhcCcceeEEeeecccHHHHHHHhhhc----CcchHHHHHHHHHHH
Confidence            112223333332  344556644311    1112223446666566667789999999988    335778888887665


Q ss_pred             HhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHH
Q 029287          152 KALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVF  188 (196)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i  188 (196)
                      ....    . +......+ |.++ ++++..+++.++|
T Consensus       152 ~~e~----~-~~~~fD~v-I~Nd-dle~a~~~l~~iI  181 (182)
T d1znwa1         152 RIEL----A-AQGDFDKV-VVNR-RLESACAELVSLL  181 (182)
T ss_dssp             HHHH----H-GGGGSSEE-EECS-SHHHHHHHHHHHH
T ss_pred             HHHH----h-hHhcCCEE-EECc-CHHHHHHHHHHHh
Confidence            4321    1 12222333 4443 7899888887765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=1.4e-12  Score=91.25  Aligned_cols=163  Identities=18%  Similarity=0.242  Sum_probs=88.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCce-echhHHHHHHHhcCC--------hhhHHHHHHhhcCCCCCHH--------HH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTH-LSAGELLRREIASNS--------EYGTTILNTIKEGKIVPSE--------VT   73 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~-i~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~--------~~   73 (196)
                      .|+|.||+||||||+++.|.+.+.-.+ .... ...+....+.        -....+.+.+..+..+...        ..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~-~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~   81 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVS-STTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCE-EECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCcceeEEEe-eccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecc
Confidence            478899999999999999998874211 1100 0001111110        1223345555555443211        11


Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA  153 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~  153 (196)
                      ...+...+..  +..++++..+.+..+   +.......+.+++++..|.+++.+|+.+|    ..++.+.++.|+..+..
T Consensus        82 ~~~i~~~~~~--g~~~i~~~~~~~~~~---lk~~~~~~~~~i~~~~~~~e~l~~RL~~R----g~~~~~~I~~Rl~~~~~  152 (186)
T d1gkya_          82 VASVKQVSKS--GKTCILDIDMQGVKS---VKAIPELNARFLFIAPPSVEDLKKRLEGR----GTETEESINKRLSAAQA  152 (186)
T ss_dssp             HHHHHHHHHH--TSEEEEECCHHHHHH---HHTCGGGCCEEEEEECSCHHHHHHHHHHH----SCSCHHHHHHHHHHHHH
T ss_pred             hhhHHHHhcC--CCeEEecchHHHHHH---HHHhhcccceEEEecCCcHHHHHHHHHhh----ccchhHHHHHHHHHHHH
Confidence            2333344442  456677766422221   11112335667777888889999999998    33467777777665443


Q ss_pred             chHhHHHHHHhcCcE-EEEeCCCCHhHHHHHHHHHHH
Q 029287          154 LNLPVINYYARRGKL-YTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~-~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      .    ... ...+.+ .+|.+ .++++..+++.++|.
T Consensus       153 e----~~~-~~~~~fd~vI~N-~dle~a~~~l~~iI~  183 (186)
T d1gkya_         153 E----LAY-AETGAHDKVIVN-DDLDKAYKELKDFIF  183 (186)
T ss_dssp             H----HHH-HTTTCSSEEEEC-SSHHHHHHHHHHHHH
T ss_pred             H----HHh-hhhcCCCEEEEC-cCHHHHHHHHHHHHH
Confidence            2    111 122222 33444 478999898888764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=9.7e-14  Score=100.66  Aligned_cols=168  Identities=19%  Similarity=0.282  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~   70 (196)
                      -+++|+|++||||||++++|.   |+...+.|.+              +++.+...++    +..++++++..+... ..
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~  106 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQ---RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV  106 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCH
T ss_pred             CEEEEECCCCCCHHHHHHHHH---hcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCccccH
Confidence            478999999999999999999   6554443332              3343333332    223466777655432 33


Q ss_pred             HHHHHH-----HHHHHhcCC-C-CcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEeecChH--------HHHHHHhh
Q 029287           71 EVTVSL-----IQKEMESSD-S-KKFLID----GFPRSEENRAAFERIMGAEPDIVLFFDCPEE--------EMVNRVLN  131 (196)
Q Consensus        71 ~~~~~~-----i~~~l~~~~-~-~~~iid----~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~--------~~~~Rl~~  131 (196)
                      ......     +.+.+...+ + ... ++    .++.++.|++++++++...|++ ++||+|+.        .+.+.+.+
T Consensus       107 ~~~~~~~~~~~~~~~i~~~~~~~~t~-i~~~g~~LSGGq~QRvalARal~~~p~i-lilDEpts~LD~~~~~~i~~~l~~  184 (241)
T d2pmka1         107 EKVIYAAKLAGAHDFISELREGYNTI-VGEQGAGLSGGQRQRIAIARALVNNPKI-LIFDEATSALDYESEHVIMRNMHK  184 (241)
T ss_dssp             HHHHHHHHHHTCHHHHTTSTTGGGSB-CSTTTTCCCHHHHHHHHHHHHHTTCCSE-EEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHhhhcchhhh-cCCCCCccCHHHHHHHhhhhhhhcccch-hhhhCCccccCHHHHHHHHHHHHH
Confidence            222221     111222111 1 222 22    3555699999999999999998 77999982        22222221


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHhhhhh
Q 029287          132 RNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAALKLV  194 (196)
Q Consensus       132 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~~~~~  194 (196)
                      -.           +.+...+.+|....+. .+++.-++.   |...+++++++++-...+.++.+.
T Consensus       185 l~-----------~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~  238 (241)
T d2pmka1         185 IC-----------KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL  238 (241)
T ss_dssp             HH-----------TTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred             Hh-----------CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence            10           0111244555554432 233322222   456688999987644455555443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.33  E-value=6.6e-12  Score=87.11  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=30.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAG   41 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~   41 (196)
                      ++.|+|+|++||||||+++.|+++||..++...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            478999999999999999999999999888654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.1e-12  Score=89.67  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=28.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      ++++|.|+|+|||||||+++.|+++++..+.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~   50 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC   50 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence            458999999999999999999999986555444

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=2.9e-12  Score=89.90  Aligned_cols=166  Identities=12%  Similarity=0.119  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCce-echhHHHHHHHhcCC--------hhhHHHHHHhhcCCCCCHH--------HH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTH-LSAGELLRREIASNS--------EYGTTILNTIKEGKIVPSE--------VT   73 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~-i~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~--------~~   73 (196)
                      .|+|.||+||||||+++.|.+.++-.+ ....... +....+.        -....+.+....|..+...        ..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TT-R~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~   80 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTT-RNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS   80 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEEC-SCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEec-cCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecc
Confidence            377899999999999999999985332 1110000 1111111        1123344444444433211        01


Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029287           74 VSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVFKA  153 (196)
Q Consensus        74 ~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~  153 (196)
                      ...+...+..  +..++++..+   . ...........|..++++-.|.+.+.+|+.+|    ..++.+.++.|+..+..
T Consensus        81 ~~~v~~~~~~--g~~~~~~~~~---~-~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R----~~~~~e~i~~rl~~~~~  150 (190)
T d1lvga_          81 KEAVRAVQAM--NRICVLDVDL---Q-GVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLR----NTETEESLAKRLAAART  150 (190)
T ss_dssp             HHHHHHHHHT--TCEEEEECCH---H-HHHHHTTSSCCCEEEEEECSCHHHHHHHHHHH----TCSCHHHHHHHHHHHHH
T ss_pred             cchhhhhhcC--CCceeecchH---h-hhhhhhhccccceEEEEecchHHHHHHHHhhc----cccchHHHHHHHHHHHH
Confidence            2233334432  3455566432   1 11111123345555444444568999999988    34577788887765544


Q ss_pred             chHhHHHHHHhcCcE-EEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          154 LNLPVINYYARRGKL-YTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~-~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      ...    .....+.+ ++|.++ +.|+..+++.++|.+.+
T Consensus       151 ~~~----~~~~~~~fd~iI~N~-dle~a~~~l~~iI~~~~  185 (190)
T d1lvga_         151 DME----SSKEPGLFDLVIIND-DLDKAYATLKQALSEEI  185 (190)
T ss_dssp             HTT----GGGSTTTCSEEEECS-SHHHHHHHHHHHTHHHH
T ss_pred             HHH----hhhhcCCCCEEEECc-CHHHHHHHHHHHHHHHH
Confidence            211    11111111 233333 78899999888776543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.29  E-value=2.2e-13  Score=99.67  Aligned_cols=162  Identities=20%  Similarity=0.234  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH---------------HHHHhcCChh-----hHHHHHHhhcC----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL---------------RREIASNSEY-----GTTILNTIKEG----   65 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~---------------~~~~~~~~~~-----~~~~~~~l~~~----   65 (196)
                      -+++|.||+||||||++++|+   |+...+.|.+.               +..+...++.     ...+.+++..+    
T Consensus        31 ei~~liG~nGaGKSTLl~~i~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~  107 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVIT---GFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICP  107 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTST
T ss_pred             CEEEEECCCCCcHHHHHHHHH---CCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhc
Confidence            478999999999999999999   87766655542               1112222211     11223333221    


Q ss_pred             ------------CCCCHHHHHHHHHHHHhcCCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChH-------
Q 029287           66 ------------KIVPSEVTVSLIQKEMESSDS---KKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEE-------  123 (196)
Q Consensus        66 ------------~~~~~~~~~~~i~~~l~~~~~---~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~-------  123 (196)
                                  .........+.+.+.++....   ..-.+..++.++.|++.+++++...|++ ++||+|+.       
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~l-lilDEPt~gLD~~~~  186 (254)
T d1g6ha_         108 GESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM-IVMDEPIAGVAPGLA  186 (254)
T ss_dssp             TSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE-EEEESTTTTCCHHHH
T ss_pred             cccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCc-hhhcCCcccCCHHHH
Confidence                        111222223333344432221   1123556778899999999999999999 88999992       


Q ss_pred             -HHHHHHhhccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHH
Q 029287          124 -EMVNRVLNRNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVR  185 (196)
Q Consensus       124 -~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~  185 (196)
                       .+.+.+.+-. .   ....      ..+.+|+...+..+|++..++.   |.++++++|+.+.+.
T Consensus       187 ~~i~~~i~~l~-~---~g~t------il~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~~~~  242 (254)
T d1g6ha_         187 HDIFNHVLELK-A---KGIT------FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVL  242 (254)
T ss_dssp             HHHHHHHHHHH-H---TTCE------EEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHHHHH
T ss_pred             HHHHHHHHHHH-H---CCCE------EEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhhccc
Confidence             1111111100 0   0111      1456676666777777554443   556778888776653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.29  E-value=3.1e-12  Score=91.75  Aligned_cols=111  Identities=20%  Similarity=0.255  Sum_probs=68.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH------------------HHHHhcCChh-----hHHHHHHhh---
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL------------------RREIASNSEY-----GTTILNTIK---   63 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~------------------~~~~~~~~~~-----~~~~~~~l~---   63 (196)
                      -+++|.||+||||||++++++   |+...+.|.+.                  ++.+....+.     ..++.+++.   
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~---gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~  108 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIG---CLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL  108 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCcchhhHhcc---CCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHH
Confidence            378999999999999999999   87766655442                  1222222111     111222221   


Q ss_pred             ---cCCCCCHHHHHHHHHHHHhcCCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           64 ---EGKIVPSEVTVSLIQKEMESSDSKKFLIDG----FPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        64 ---~~~~~~~~~~~~~i~~~l~~~~~~~~iid~----~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                         ...........+.+.+.++..+-..-+.+.    ++.++.|++++++++...|++ +++|+|+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~l-LllDEPTs~  175 (230)
T d1l2ta_         109 IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPI-ILADQPTGA  175 (230)
T ss_dssp             HTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSE-EEEESTTTT
T ss_pred             HHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCE-EEecCCccc
Confidence               112234444455555666543322112333    455699999999999999999 889999843

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.29  E-value=1.4e-13  Score=100.02  Aligned_cols=166  Identities=20%  Similarity=0.239  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH--------------HHHHhcCCh----hhHHHHHHhhcCCC--CC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL--------------RREIASNSE----YGTTILNTIKEGKI--VP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~l~~~~~--~~   69 (196)
                      -+++|.|++||||||++++|.   |+...+.|++.              ++.+...++    +..++++++..+..  ..
T Consensus        29 e~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~  105 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLE---RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT  105 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHT---TSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSC
T ss_pred             CEEEEECCCCCCHHHHHHHHH---HhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheecccccccc
Confidence            588999999999999999999   76665555442              111121111    12246666654322  23


Q ss_pred             HHHHHHHHHHHHhc------CCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh--------HHHHHHHhh
Q 029287           70 SEVTVSLIQKEMES------SDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE--------EEMVNRVLN  131 (196)
Q Consensus        70 ~~~~~~~i~~~l~~------~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~--------~~~~~Rl~~  131 (196)
                      +.............      ... ...+-+   .++.++.|++++++++...|++ ++||+|+        ..+.+.+.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i-lilDEpts~LD~~~~~~i~~~l~~  184 (242)
T d1mv5a_         106 DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI-LMLDEATASLDSESESMVQKALDS  184 (242)
T ss_dssp             HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE-EEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE-EEecCCccccCHHHHHHHHHHHHH
Confidence            33333222222111      011 122221   3666799999999999999998 7799998        222222221


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHhhh
Q 029287          132 RNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       132 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      -..+           +...+.+|....+.. +++..++.   |.+.++++++++. ...+.+++
T Consensus       185 l~~~-----------~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~  235 (242)
T d1mv5a_         185 LMKG-----------RTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELVAT-HPLYAKYV  235 (242)
T ss_dssp             HHTT-----------SEEEEECCSHHHHHH-CSEEEEEETTEECCCSCHHHHHHH-CHHHHHHH
T ss_pred             HcCC-----------CEEEEEECCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC-ChHHHHHH
Confidence            1000           111445566555543 55433332   6678999999865 33444444

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.6e-12  Score=92.90  Aligned_cols=168  Identities=19%  Similarity=0.296  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC--C
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV--P   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~--~   69 (196)
                      -+++|+|++||||||++++|.   |+...+.|.+              +++.+...++    +..++++++..+...  .
T Consensus        41 e~vaivG~sGsGKSTLl~li~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~  117 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQ---NLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPT  117 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCC
T ss_pred             CEEEEECCCCCcHHHHHHHHh---cccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhcccch
Confidence            488999999999999999999   6554444332              2333333222    123467777655322  2


Q ss_pred             HHHHHHH-----HHHHHhcC-CCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHH-------HHHhhc
Q 029287           70 SEVTVSL-----IQKEMESS-DSKKFLID----GFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMV-------NRVLNR  132 (196)
Q Consensus        70 ~~~~~~~-----i~~~l~~~-~~~~~iid----~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~-------~Rl~~r  132 (196)
                      .......     ....+... .+-...++    .++.++.|++++++++...|++ ++||+|+.-+.       ..+...
T Consensus       118 ~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~i-lilDEpTs~LD~~~~~~i~~~l~~  196 (251)
T d1jj7a_         118 MEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCV-LILDDATSALDANSQLQVEQLLYE  196 (251)
T ss_dssp             HHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSE-EEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcE-EEecCcCcccChhhHHHHHHHHHH
Confidence            2222111     11122211 11111233    3555699999999999999998 77999992221       111111


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHhh
Q 029287          133 NEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAAL  191 (196)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~~  191 (196)
                      .....  +.      ...+.+|....+. ++++..++.   |...++++++++. ...+.++
T Consensus       197 l~~~~--~~------Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y~~l  248 (251)
T d1jj7a_         197 SPERY--SR------SVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEK-KGCYWAM  248 (251)
T ss_dssp             CGGGG--GC------EEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHH-TSHHHHH
T ss_pred             Hhhhc--CC------EEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC-CcHHHHH
Confidence            00000  00      1145556555443 344333332   5567899999866 2334444

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.24  E-value=1.4e-12  Score=91.56  Aligned_cols=30  Identities=20%  Similarity=0.207  Sum_probs=27.0

Q ss_pred             CCCCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            5 GGKGPFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ..++|++|+|.|++||||||+|+.|++.++
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            356789999999999999999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.24  E-value=1.1e-13  Score=101.13  Aligned_cols=168  Identities=21%  Similarity=0.272  Sum_probs=86.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCC--CCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGK--IVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~--~~~   69 (196)
                      -+++|+|++||||||++++|.   |+...+.|.+              +++.+...++    ....+.+++..+.  ...
T Consensus        42 e~iaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~  118 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLIT---RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYS  118 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHT---TTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCC
T ss_pred             CEEEEECCCCChHHHHHHHHh---cccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCC
Confidence            478999999999999999999   6555444433              1222222111    1122444443332  223


Q ss_pred             HHHHHHHH-----HHHHhcC-C-CCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecChHH--------HHHHHhh
Q 029287           70 SEVTVSLI-----QKEMESS-D-SKKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPEEE--------MVNRVLN  131 (196)
Q Consensus        70 ~~~~~~~i-----~~~l~~~-~-~~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~--------~~~Rl~~  131 (196)
                      ...+...+     .+.+... . ....+-+   .++.++.|++++++++...|++ ++||+|+..        +.+.+.+
T Consensus       119 ~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~i-lilDEpts~LD~~~~~~i~~~l~~  197 (253)
T d3b60a1         119 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI-LILDEATSALDTESERAIQAALDE  197 (253)
T ss_dssp             HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE-EEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCE-EEeccccccCCHHHHHHHHHHHHH
Confidence            22222111     1112111 1 1222211   2555699999999999999998 779999921        1222211


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHHHHHHHHHhhhhh
Q 029287          132 RNEGRVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFEQVRAVFAALKLV  194 (196)
Q Consensus       132 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~~i~~~i~~~~~~  194 (196)
                      -.           +.+...+.+|+...+. ++++..++.   |...++++++++. ...+.++.+.
T Consensus       198 l~-----------~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~~~  250 (253)
T d3b60a1         198 LQ-----------KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKM  250 (253)
T ss_dssp             HH-----------TTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHHH
T ss_pred             hc-----------cCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHH
Confidence            10           0011244556554443 244322222   4456789999875 3344555443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.23  E-value=4.1e-11  Score=82.53  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=25.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      ..++|.|+|+|||||||+++.|+++++.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4589999999999999999999999853

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.22  E-value=3.3e-13  Score=98.60  Aligned_cols=109  Identities=20%  Similarity=0.299  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHH--------------HHHHHhcCCh----hhHHHHHHhhcCCCC-CH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGEL--------------LRREIASNSE----YGTTILNTIKEGKIV-PS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~--------------~~~~~~~~~~----~~~~~~~~l~~~~~~-~~   70 (196)
                      -+++|+|++||||||+++.|.   |+...+.|.+              +++.+...++    +..++++++..+... .+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~  121 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIP---RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD  121 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTT---TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCH
T ss_pred             CEEEEECCCCCcHHHHHHHHH---hcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCCCH
Confidence            478999999999999999999   5554443332              2333332222    223467777655433 33


Q ss_pred             HHHHHHHH-----HHHhc-CCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           71 EVTVSLIQ-----KEMES-SDS-KKFLID---GFPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        71 ~~~~~~i~-----~~l~~-~~~-~~~iid---~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      ....+.+.     +.+.. ..+ +..+-+   .++.++.|++++++++...|++ ++||+|+
T Consensus       122 ~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~i-lilDEpt  182 (255)
T d2hyda1         122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI-LILDEAT  182 (255)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE-EEEESTT
T ss_pred             HHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCE-EEEeCcc
Confidence            33322211     11111 111 222222   3566799999999999999998 7799999

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.8e-12  Score=96.09  Aligned_cols=109  Identities=18%  Similarity=0.248  Sum_probs=65.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcCCh----hhHHHHHHhhcCCCCCHHHHHHHHHH-----
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE-IASNSE----YGTTILNTIKEGKIVPSEVTVSLIQK-----   79 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~i~~-----   79 (196)
                      -+++|+||+||||||++++|.   |....+.|.+.... +...++    ...++++++..+...........+..     
T Consensus        63 e~vaivG~nGsGKSTLl~~i~---Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~  139 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLIL---GELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ  139 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH---TSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHH
T ss_pred             CEEEEECCCCChHHHHHHHHh---CCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHHHHHHHHhHH
Confidence            478999999999999999999   76665555442111 010011    11246666665554444322222111     


Q ss_pred             HHh-cCCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEeecCh
Q 029287           80 EME-SSDSKKFLIDG----FPRSEENRAAFERIMGAEPDIVLFFDCPE  122 (196)
Q Consensus        80 ~l~-~~~~~~~iid~----~~~~~~~~~~~~~~~~~~p~~~i~ld~~~  122 (196)
                      .+. .......++..    ++.++.|++++++++...|++ ++||+|+
T Consensus       140 ~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i-llLDEPt  186 (281)
T d1r0wa_         140 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL-YLLDSPF  186 (281)
T ss_dssp             HHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE-EEEESCC
T ss_pred             HHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccc-hhhcCcc
Confidence            111 11122223332    566799999999999999998 7899998

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=3.3e-12  Score=92.14  Aligned_cols=159  Identities=17%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHH----------H----HHhc-----CChhhHHHHHHhhc-CCCCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLR----------R----EIAS-----NSEYGTTILNTIKE-GKIVP   69 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~----------~----~~~~-----~~~~~~~~~~~l~~-~~~~~   69 (196)
                      -+++|.||+||||||+.+.|+   |+.. +.|.+..          .    ....     ..+....+.+++.. .....
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~---Gl~~-~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  101 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMA---GMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT  101 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHH---TSCC-CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTT
T ss_pred             CEEEEECCCCCcHHHHHHHHh---CCCC-CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhh
Confidence            488999999999999999999   6542 3232210          0    0000     00111112222211 11111


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhC-------CCCcEEEEeecChHH-------HHHHHhhccCC
Q 029287           70 SEVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMG-------AEPDIVLFFDCPEEE-------MVNRVLNRNEG  135 (196)
Q Consensus        70 ~~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~-------~~p~~~i~ld~~~~~-------~~~Rl~~r~~~  135 (196)
                      .......+...+...+.-..-...++.++.|++.+++++.       +.|++ ++||+|+.-       .+.++.+....
T Consensus       102 ~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l-lllDEPt~gLD~~~~~~i~~~i~~l~~  180 (231)
T d1l7vc_         102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL-LLLDEPMNSLDVAQQSALDKILSALCQ  180 (231)
T ss_dssp             CHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE-EEESSCSTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE-EEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence            2223333344444332222224457778999999999863       25677 889999921       11111111000


Q ss_pred             CCCCcHHHHHHHHHHHHhchHhHHHHHHhcCcEEE---EeCCCCHhHHHH
Q 029287          136 RVDDNIDTVRKRLQVFKALNLPVINYYARRGKLYT---INAVGTVDEIFE  182 (196)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~~~~~~~~v~~  182 (196)
                       .  ...      ..+.+|+...+..++++..++.   |.+.+++++++.
T Consensus       181 -~--g~t------ii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~  221 (231)
T d1l7vc_         181 -Q--GLA------IVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  221 (231)
T ss_dssp             -T--TCE------EEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred             -C--CCE------EEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhC
Confidence             0  001      1456677777888888776664   778899999874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=4.8e-11  Score=84.49  Aligned_cols=123  Identities=15%  Similarity=0.211  Sum_probs=66.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCc-----eechhHHHHHHHhcCChhhHHHHHHhhcCCCCCH---HHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLT-----HLSAGELLRREIASNSEYGTTILNTIKEGKIVPS---EVTVSLIQK   79 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~i~~   79 (196)
                      +|++|++.|.|||||||+++.|++.++..     .++.| .++.........................   .........
T Consensus         1 ~p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1bifa1           1 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG-QYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK   79 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc-ceehhhccccccccccccccccchhhHHHHHHHHHHHHHH
Confidence            47899999999999999999999988533     34554 4454433322110000000000000000   111222333


Q ss_pred             HHhcCCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEeecChHHHHHHHhh
Q 029287           80 EMESSDSKKFLIDGFPRSEENRAAFERIM--GAEPDIVLFFDCPEEEMVNRVLN  131 (196)
Q Consensus        80 ~l~~~~~~~~iid~~~~~~~~~~~~~~~~--~~~p~~~i~ld~~~~~~~~Rl~~  131 (196)
                      .+....+..+++|.......++..+....  ...+-+++...|+.+.+.++...
T Consensus        80 ~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (213)
T d1bifa1          80 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIV  133 (213)
T ss_dssp             HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHH
T ss_pred             HHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHH
Confidence            34444556778888777666665554432  22444557778877776665443

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.8e-10  Score=86.00  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=32.8

Q ss_pred             cCCCCceEEEEEcCCCCChHHHHHHHHHHhC-------CceechhHHH
Q 029287            4 KGGKGPFICFVLGGPGSGKGTQCAKIVKNYG-------LTHLSAGELL   44 (196)
Q Consensus         4 ~~~~~~~~i~i~G~~GsGKST~~~~L~~~~~-------~~~i~~~~~~   44 (196)
                      ...+.|++|+|.|++||||||+|+.|++.+.       ...++.|+++
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            3457899999999999999999999999873       3346677664

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=8e-10  Score=78.05  Aligned_cols=162  Identities=14%  Similarity=0.164  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC--ceechhHHHHHHHhcCC--------hhhHHHHHHhhcCCCCCHHH-------
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL--THLSAGELLRREIASNS--------EYGTTILNTIKEGKIVPSEV-------   72 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~--~~i~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~-------   72 (196)
                      ++|+|.|||||||||+.+.|.+.+..  ........ .+...++.        -.-..+.+.+..|..+....       
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~T-TR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHT-TRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEE-CSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEe-ccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            57788999999999999999988642  11111111 11111211        12334566666665543211       


Q ss_pred             -HHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029287           73 -TVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQVF  151 (196)
Q Consensus        73 -~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~  151 (196)
                       ....+...+.  .+..++++.-+.+..   .+ +.....+-.++++-.+.+++.+|+.+|    ..++.+.++.|+...
T Consensus        82 t~~~~v~~~~~--~g~~~ildid~~g~~---~l-k~~~~~~~~ifi~pps~~~l~~RL~~R----g~~~~~~i~~Rl~~a  151 (205)
T d1s96a_          82 TSREAIEQVLA--TGVDVFLDIDWQGAQ---QI-RQKMPHARSIFILPPSKIELDRRLRGR----GQDSEEVIAKRMAQA  151 (205)
T ss_dssp             EEHHHHHHHHT--TTCEEEEECCHHHHH---HH-HHHCTTCEEEEEECSSHHHHHHHHHTT----SCSCHHHHHHHHHHH
T ss_pred             cccchHHHHHh--cCCceeecCcHHHHH---HH-HhhhcccceeeeeccchHHHHHHHHhc----CCchHHHHHHHHHHH
Confidence             1233444444  356677775542221   12 223334444445555567899999988    344566666665543


Q ss_pred             HhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHH
Q 029287          152 KALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFA  189 (196)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~  189 (196)
                      ....    .+ ......+++|  .++++..+++.++|.
T Consensus       152 ~~E~----~~-~~~fD~vIvN--ddl~~a~~el~~iI~  182 (205)
T d1s96a_         152 VAEM----SH-YAEYDYLIVN--DDFDTALTDLKTIIR  182 (205)
T ss_dssp             HHHH----TT-GGGSSEEEEC--SSHHHHHHHHHHHHH
T ss_pred             HHHH----HH-HhCCCEEEEC--cCHHHHHHHHHHHHH
Confidence            3321    11 1223334443  378998899888874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.08  E-value=2.4e-11  Score=85.64  Aligned_cols=109  Identities=18%  Similarity=0.171  Sum_probs=64.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH---------HhcCC-----hhhHHHHHHhh-----cCCCCCH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE---------IASNS-----EYGTTILNTIK-----EGKIVPS   70 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~---------~~~~~-----~~~~~~~~~l~-----~~~~~~~   70 (196)
                      -+++|.||+||||||+.++|+   |+...+.|++....         ....+     +....+.+++.     .+.....
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~---gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~  104 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTIS---TYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK  104 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCH
T ss_pred             CEEEEECCCCChHHHHHHHHh---cccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCH
Confidence            478999999999999999999   77666555543211         00000     01111122211     2223333


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHH
Q 029287           71 EVTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEE  124 (196)
Q Consensus        71 ~~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~  124 (196)
                      ....+. .+.+...+.... +..++.++.|++.+++++...|++ ++||+|+.-
T Consensus       105 ~~~~~~-l~~~~~~~~~~~-~~~LSgG~~qrv~ia~al~~~~~l-lllDEPt~g  155 (200)
T d1sgwa_         105 NEIMDA-LESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEI-YVLDDPVVA  155 (200)
T ss_dssp             HHHHHH-HHHTTCCCTTSB-GGGSCHHHHHHHHHHHHTTSCCSE-EEEESTTTT
T ss_pred             HHHHHH-HHHcCCcccccc-cCcCCCcHHHHHHHHHHHhcCCCE-EEEcCcccc
Confidence            333222 223332222222 455778899999999999999999 779999843

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.96  E-value=2e-10  Score=84.69  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=27.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh---CC--ceechhHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY---GL--THLSAGELL   44 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~---~~--~~i~~~~~~   44 (196)
                      ++++|+|+|++||||||+++.|.+.+   ++  ..++.|+++
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            45699999999999999999998877   33  367777664

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.79  E-value=2.6e-09  Score=77.10  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRRE   47 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~   47 (196)
                      |.+|+|+|+.||||||+|+.|++++|+.+++.++.+.+.
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~   39 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA   39 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHH
Confidence            479999999999999999999999999999965544443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.77  E-value=7.8e-09  Score=75.53  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=31.7

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhC--CceechhHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYG--LTHLSAGELL   44 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~--~~~i~~~~~~   44 (196)
                      ...|..|+|.|||||||||+++.|++.++  +..++.+++.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~   69 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   69 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHH
Confidence            45678899999999999999999999984  5566765553

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.1e-08  Score=66.01  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+|+|.||+||||||+.+.|.+.+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            468889999999999999999876

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.59  E-value=8e-07  Score=54.56  Aligned_cols=141  Identities=19%  Similarity=0.315  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCCCcEE
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELLRREIASNSEYGTTILNTIKEGKIVPSEVTVSLIQKEMESSDSKKFL   90 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~i   90 (196)
                      .|++.||+.|=|||++..|++.+.++.+..+.+--. ..++                   +   .+........+.+.+|
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfela-ksgn-------------------e---klfehfnkladednvi   58 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA-KSGN-------------------E---KLFEHFNKLADEDNVI   58 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHH-HHCH-------------------H---HHHHHHHHHTTCCSEE
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhh-hccC-------------------H---HHHHHHHhhcccccee
Confidence            577899999999999999999998888765322111 0110                   1   1112222233455677


Q ss_pred             EeCCCC---------------CHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhc
Q 029287           91 IDGFPR---------------SEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDD-NIDTVRKRLQVFKAL  154 (196)
Q Consensus        91 id~~~~---------------~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~-~~~~~~~~~~~~~~~  154 (196)
                      +|+|..               +..|...+...+..+.. ++||.++|.++..|++-|+....+. +.+.+   ++.|.+.
T Consensus        59 idrfvysnlvyakkfkdysilterqlrfiedkikakak-vvylhadpsvikkrlrvrgdeyiegkdidsi---lelyrev  134 (164)
T d2axpa1          59 IDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAK-VVYLHADPSVIKKRLRVRGDEYIEGKDIDSI---LELYREV  134 (164)
T ss_dssp             EESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEE-EEEEECCHHHHHHHHHHHTCSSCCSSHHHHH---HHHHHHH
T ss_pred             eehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhhee-EEEEecChHHHHHHhccccccccccCCHHHH---HHHHHHH
Confidence            777542               35666666665554544 5999999999999999884333222 33332   3355443


Q ss_pred             hHhHHHHHHhcC-cEEEEe-CCCCHhHHHHHHH
Q 029287          155 NLPVINYYARRG-KLYTIN-AVGTVDEIFEQVR  185 (196)
Q Consensus       155 ~~~~~~~~~~~~-~~~~I~-~~~~~~~v~~~i~  185 (196)
                             .++.+ ..+.-| +.-+.+++...|.
T Consensus       135 -------msnaglhtyswdtgqwssdeiakdii  160 (164)
T d2axpa1         135 -------MSNAGLHTYSWDTGQWSSDEIAKDII  160 (164)
T ss_dssp             -------HHTCSSCEEEEETTTSCHHHHHHHHH
T ss_pred             -------HhcCCceeeecccCCcchHHhhhhee
Confidence                   12221 233444 3446788877654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.48  E-value=3.4e-08  Score=67.51  Aligned_cols=26  Identities=38%  Similarity=0.590  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      |.|+|+|||||||||+++.++..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            46899999999999999999987743

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=8.1e-08  Score=70.58  Aligned_cols=39  Identities=28%  Similarity=0.470  Sum_probs=30.8

Q ss_pred             CCCCceEEEEEcCCCCChHHHHHHHHHHh--------CCceechhHH
Q 029287            5 GGKGPFICFVLGGPGSGKGTQCAKIVKNY--------GLTHLSAGEL   43 (196)
Q Consensus         5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~--------~~~~i~~~~~   43 (196)
                      +.+.|++|+|.|++||||||++..|.+.+        .+..++.|++
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            34578999999999999999998776554        2445687776

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=7.7e-08  Score=65.04  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+|+|+|++||||||+++.|.+++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            488999999999999999999876

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.34  E-value=1.4e-07  Score=63.78  Aligned_cols=25  Identities=32%  Similarity=0.170  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      |++|+|+|++||||||++..|.+++
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999998876

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=5.9e-07  Score=64.18  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      -+.+.||||+||||+++.|+++++....
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            4667999999999999999999987654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4e-07  Score=62.05  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.|+|+|++||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            358889999999999999999887

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=7e-07  Score=64.70  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +.|.-+.+.||||||||++++.+++.++...+.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~   75 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEE
Confidence            446778899999999999999999999877644

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=8.9e-07  Score=63.71  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=25.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      ...++|.||||+||||++++|++.++..+.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            356788999999999999999999986554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=8.6e-07  Score=62.28  Aligned_cols=30  Identities=37%  Similarity=0.713  Sum_probs=26.6

Q ss_pred             cCCCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            4 KGGKGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         4 ~~~~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++.+|.+|+++||+||||||.+..|+.++
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999999999877

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.12  E-value=1.2e-06  Score=63.02  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=27.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      +.-|.|.||||||||++++.|++.++..++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            45688899999999999999999999876643

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.12  E-value=1.1e-06  Score=63.29  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=28.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      +.|.-+.+.||||+|||++++.|++.+|+.++..
T Consensus        40 ~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i   73 (247)
T d1ixza_          40 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA   73 (247)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceEEEecCCCCChhHHHHHHHHHcCCCEEEE
Confidence            3456688899999999999999999998877543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.11  E-value=1.2e-06  Score=62.59  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=25.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +.-+.+.||||+||||+++.+++.++.....
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~   65 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   65 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            3456679999999999999999999876543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.07  E-value=1.4e-05  Score=55.80  Aligned_cols=27  Identities=41%  Similarity=0.581  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.+.+|++.||+||||||.+..|+.++
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345788999999999999999999887

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.07  E-value=1.4e-06  Score=61.02  Aligned_cols=29  Identities=31%  Similarity=0.585  Sum_probs=21.9

Q ss_pred             CCCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            5 GGKGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.+.|.+|++.||+||||||.+..|+.++
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999877

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.05  E-value=1.5e-06  Score=62.03  Aligned_cols=24  Identities=29%  Similarity=0.446  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ++|+|+|++||||||+++.|.+++
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            589999999999999999999876

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=2.1e-06  Score=60.15  Aligned_cols=29  Identities=34%  Similarity=0.744  Sum_probs=25.7

Q ss_pred             CCCCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            5 GGKGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         5 ~~~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+.|.+|++.||+||||||.+..|+.++
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999999999776

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.99  E-value=2.1e-06  Score=63.84  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=27.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCce--echhHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH--LSAGEL   43 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~--i~~~~~   43 (196)
                      +.-+.+.||||||||.+++.|++.++...  ++.+++
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~   85 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   85 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccchhccccccc
Confidence            34567799999999999999999987554  444443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=3.9e-06  Score=60.72  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      +.|+-+.|.||||||||+++++++..++..++..
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i   69 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI   69 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHhCCeEEEE
Confidence            3456788899999999999999999998776543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.93  E-value=4.1e-06  Score=58.47  Aligned_cols=27  Identities=33%  Similarity=0.447  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +++.+|++.||+||||||.+..|+.++
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999999876

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=3.4e-06  Score=63.09  Aligned_cols=27  Identities=26%  Similarity=0.208  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ++.++|+|+|+|||||||+...|...+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999999998776

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=4e-06  Score=60.96  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=28.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      .+.-|.|.||||+|||++++.++..+|..++..
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~   72 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI   72 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCcEEEE
Confidence            456688999999999999999999999887654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.87  E-value=6.2e-06  Score=62.53  Aligned_cols=34  Identities=24%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      ++...+++.||||+|||++++.|++.+|..+++.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            3456888999999999999999999999888764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.87  E-value=4.9e-06  Score=58.99  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      .+.|.||+|+||||+++.+++.++
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            467899999999999999998864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.87  E-value=5.7e-06  Score=61.76  Aligned_cols=27  Identities=22%  Similarity=0.217  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+..+|+|+|+|||||||+...|.+.+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.85  E-value=6.3e-06  Score=59.37  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..+..++|.||+|+||||+++.|++.+
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678889999999999999999987

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=8.3e-06  Score=57.51  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCC
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      +.+.||+|+||||+++.|++.++.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCchhhHHHHHHHHhc
Confidence            567999999999999999988753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=8.5e-06  Score=57.75  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ++|.||+|+||||+++.+++.+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            6679999999999999999875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=8.2e-06  Score=63.47  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=27.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      |.-|.++||+|||||-+++.|++.++.+++..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            44688899999999999999999998887643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.67  E-value=8.9e-06  Score=58.90  Aligned_cols=23  Identities=35%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ++.|.||||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45668999999999999999886

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=1.5e-05  Score=56.98  Aligned_cols=23  Identities=26%  Similarity=0.600  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.|.||+|+||||+++.+++.+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            46789999999999999999986

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.7e-05  Score=55.86  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      +.|.||+|+||||++++|++.++
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            56799999999999999998863

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=2.6e-05  Score=57.92  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      .+++.||+|+|||.+++.|++.++..++
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i   81 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELL   81 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCee
Confidence            6778999999999999999999986654

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=0.00024  Score=48.96  Aligned_cols=161  Identities=15%  Similarity=0.174  Sum_probs=79.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCce-echhHHHHHHHhcCCh---------hhHHHHHHhhcCCCCCHH-------
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGLTH-LSAGELLRREIASNSE---------YGTTILNTIKEGKIVPSE-------   71 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~~~-i~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-------   71 (196)
                      +..|+|.||   ||+|+.+.|.+.+.-.+ .......| ....+..         ....+.+.+..|..+...       
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR-~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~Y   84 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTR-PKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY   84 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECS-CCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCccceeeccccccc-CCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCcc
Confidence            456666776   69999999999874221 11100011 1111110         112355555555544211       


Q ss_pred             -HHHHHHHHHHhcCCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEeecChHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029287           72 -VTVSLIQKEMESSDSKKFLIDGFPRSEENRAAFERIMGAEPDIVLFFDCPEEEMVNRVLNRNEGRVDDNIDTVRKRLQV  150 (196)
Q Consensus        72 -~~~~~i~~~l~~~~~~~~iid~~~~~~~~~~~~~~~~~~~p~~~i~ld~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~  150 (196)
                       .....+...+..  +..++++--+.+..+.   . .....| ++||+..|......|+.+|.      +.+.+++++..
T Consensus        85 Gt~~~~i~~~~~~--gk~~lldid~~g~~~l---k-~~~~~~-i~IfI~pps~e~l~~l~kr~------~~~~i~~r~~~  151 (199)
T d1kjwa2          85 GTSVQSVREVAEQ--GKHCILDVSANAVRRL---Q-AAHLHP-IAIFIRPRSLENVLEINKRI------TEEQARKAFDR  151 (199)
T ss_dssp             EEEHHHHHHHHHT--TCEEEECCCTTHHHHH---H-HTTCCC-EEEEECCSSHHHHHHHCTTS------CHHHHHHHHHH
T ss_pred             ceeeeEEEehhcC--CCcccccccchHHhhh---h-hhccce-eEEeeccccHHHHHhhhccc------cHHHHHHHHHH
Confidence             113344455553  5566776544332222   1 122233 45888776555555655441      44555555443


Q ss_pred             HHhchHhHHHHHHhcCcEEEEeCCCCHhHHHHHHHHHHHhhh
Q 029287          151 FKALNLPVINYYARRGKLYTINAVGTVDEIFEQVRAVFAALK  192 (196)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~v~~~i~~~i~~~~  192 (196)
                      ....    ...+.+.... +|. +.+.++..+++.++|+++.
T Consensus       152 ~~~~----e~~~~~~fd~-vI~-Nddle~a~~~l~~iI~~~~  187 (199)
T d1kjwa2         152 ATKL----EQEFTECFSA-IVE-GDSFEEIYHKVKRVIEDLS  187 (199)
T ss_dssp             HHHH----HHHHGGGCSE-EEC-CSSHHHHHHHHHHHHHHHS
T ss_pred             HHHH----HHHhhccCCE-EEE-CcCHHHHHHHHHHHHHHhc
Confidence            3222    1222332233 333 3479999999999887754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.59  E-value=2.9e-05  Score=51.54  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.+.|+|.|.+||||||+.+.+..
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC
Confidence            447899999999999999999874

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.59  E-value=2.2e-05  Score=51.80  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +.|+|.|++||||||+++.|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36788999999999999998743

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.58  E-value=1.9e-05  Score=53.38  Aligned_cols=25  Identities=24%  Similarity=0.050  Sum_probs=22.3

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +++...|+|.|.+||||||+..+|.
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHh
Confidence            4566889999999999999999997

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=4.2e-05  Score=50.72  Aligned_cols=29  Identities=21%  Similarity=0.418  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLT   36 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~   36 (196)
                      ...+|+|.|.-||||||+++.+.+.+|+.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            34689999999999999999999999864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.49  E-value=4.1e-05  Score=51.55  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=23.0

Q ss_pred             cCCCCceEEEEEcCCCCChHHHHHHHH
Q 029287            4 KGGKGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         4 ~~~~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .++.+.+.|++.|.+||||||+++.|.
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHh
Confidence            344566899999999999999999886

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.45  E-value=4.5e-05  Score=51.29  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +-+.|+|+|.+||||||++..|.
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~   36 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFS   36 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh
Confidence            44789999999999999999998

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.42  E-value=5.7e-05  Score=54.22  Aligned_cols=28  Identities=25%  Similarity=0.236  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTH   37 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~   37 (196)
                      ..++|.|++|+||||+++.+++..+...
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            4678899999999999999998876543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=6.8e-05  Score=50.88  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +..+.|+|+|.+|+||||+.++|..
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4468999999999999999999983

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.41  E-value=5e-05  Score=50.58  Aligned_cols=23  Identities=26%  Similarity=0.241  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      -+.|+|.|++||||||+.+.|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            36788999999999999999873

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.41  E-value=4.9e-05  Score=52.12  Aligned_cols=21  Identities=14%  Similarity=0.158  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +.|+|.|.+||||||+.+.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            479999999999999999998

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=2.7e-05  Score=52.75  Aligned_cols=25  Identities=12%  Similarity=0.178  Sum_probs=22.0

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ......|+|.|.+++||||+.++|.
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHh
Confidence            4456889999999999999999987

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.39  E-value=0.00012  Score=51.77  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -++.|.|+||||||+++..++...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            578889999999999999999885

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=4.7e-05  Score=51.87  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +..+.|+|.|.+|+||||+.+.+..
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhh
Confidence            4457899999999999999999875

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.34  E-value=6.5e-05  Score=50.73  Aligned_cols=30  Identities=20%  Similarity=0.432  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      .-++|.|+||+||||++-.|.+. |...+.-
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~-g~~lv~D   44 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR-GHRLIAD   44 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT-TCEEEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeEEec
Confidence            45788999999999999999887 7766554

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=8e-05  Score=50.09  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=22.4

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +...+.|+|.|.+|+||||+++.+..
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHh
Confidence            44558899999999999999998874

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=9.2e-05  Score=51.47  Aligned_cols=28  Identities=14%  Similarity=0.233  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      +.|.-+.+.||+|+||||+++.+++.+.
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            4456688899999999999999999873

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=6.9e-05  Score=49.29  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .|+|.|++|+||||+...|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5788999999999999999854

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=6.8e-05  Score=49.60  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +.|+|.|.+||||||+.+.|.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            678999999999999999998

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.27  E-value=6.1e-05  Score=50.92  Aligned_cols=30  Identities=13%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      .-+.|.|++|+||||++-.|.++ |...+.-
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~-G~~lvaD   45 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK-NHLFVGD   45 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT-TCEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCceecC
Confidence            45778999999999999999876 7666543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=8.6e-05  Score=49.74  Aligned_cols=20  Identities=35%  Similarity=0.639  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~   30 (196)
                      .|+|.|.+||||||+.+.|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999998

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00012  Score=51.88  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhC
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      .|..+.|.||+|+||||+++.+++.++
T Consensus        33 ~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          33 IHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            345677899999999999999998874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=9.7e-05  Score=50.99  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++.|.|+|||||||++..++.+.
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            578889999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00011  Score=49.20  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|++.|.+||||||+.+.|...
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcC
Confidence            367899999999999999998753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00012  Score=45.96  Aligned_cols=26  Identities=4%  Similarity=0.070  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .-|.|.++|.+||||||+++.|...+
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            35899999999999999999998777

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=9.7e-05  Score=49.26  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.+.|+|.|.+|+||||+++.|..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            457899999999999999999874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00014  Score=48.67  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+.|+|.|.+||||||+++.+..
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            347899999999999999998874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00012  Score=49.19  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+||||||+++.+..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5789999999999999999873

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.18  E-value=0.00012  Score=49.05  Aligned_cols=30  Identities=20%  Similarity=0.407  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      .-+.|.|++|+||||++-.|.++ |...+.-
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~-g~~li~D   45 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR-GHRLVAD   45 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeEEeC
Confidence            45788999999999999888887 7666554

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00013  Score=48.50  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +..|++.|.+|+||||+++.|..
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            35788999999999999998884

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.18  E-value=0.00014  Score=48.36  Aligned_cols=22  Identities=27%  Similarity=0.151  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|++||||||+...|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4688899999999999999874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00011  Score=50.64  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +.|+|.|++||||||+.+.|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36788999999999999999853

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.17  E-value=9.1e-05  Score=49.73  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHH
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +++.+.|+++|.+||||||+.+.|.
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHh
Confidence            3455788999999999999999987

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.17  E-value=0.00025  Score=49.40  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=25.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh-----CCceechhHHH
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNY-----GLTHLSAGELL   44 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~-----~~~~i~~~~~~   44 (196)
                      +.|.|++|||||.+++++...+     ....++..+..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~   76 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   76 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHH
Confidence            6789999999999999999886     23345554444

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00015  Score=49.19  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ++...|+|.|.+|+||||+++.+...
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            45578999999999999999988853

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00014  Score=48.76  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+|+||||+++.+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            6788999999999999998874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00014  Score=48.62  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +.|+|.|.+|+||||+++.|...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            67899999999999999999853

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00014  Score=49.33  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|+|.|.+|+||||+++.|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            5788999999999999999873

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00015  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.567  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+|+||||+++.+..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6789999999999999998874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00016  Score=47.95  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|++.|.+|+||||+++.+..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46789999999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.12  E-value=0.00014  Score=53.86  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ++.+.||||+|||.+++.|+...|
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            345589999999999999999874

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00015  Score=48.67  Aligned_cols=22  Identities=27%  Similarity=0.611  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+||||||++..+..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6799999999999999999874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.11  E-value=0.00018  Score=54.28  Aligned_cols=29  Identities=21%  Similarity=0.318  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      .-+.++||+|+|||-+++.|++.++..++
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             cceeeeCCCCccHHHHHHHHHhhccccee
Confidence            44667899999999999999998865543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.11  E-value=0.00012  Score=49.46  Aligned_cols=19  Identities=21%  Similarity=0.309  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHHH
Q 029287           12 CFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~   30 (196)
                      |+|+|+||+||||+.+.|.
T Consensus         3 I~lvG~~nvGKSsLin~l~   21 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7889999999999999998

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.10  E-value=0.00013  Score=49.39  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ++.+.|++.|.+||||||+.+.|.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            445889999999999999999886

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00019  Score=47.76  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|+|.|.+|+||||+++.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6789999999999999998874

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.09  E-value=0.00016  Score=48.72  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999999983

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0002  Score=47.72  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|+|.|.+|+||||+++.+..
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            36789999999999999998874

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00017  Score=49.74  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      -|+|.|++||||||+.+.|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999999853

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00014  Score=53.34  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.+|+|++||||||++.+|.=
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3678899999999999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.07  E-value=0.0001  Score=49.93  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~   30 (196)
                      -|+|+|++++||||+.+.|.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSE
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            37899999999999999996

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00019  Score=47.66  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+|+||||+.+.|..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6788999999999999998874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00022  Score=47.41  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|+|.|.+|+||||++..+..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999999875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00016  Score=50.73  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+++|+|.-||||||+++.|.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            477889999999999999988753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00014  Score=51.00  Aligned_cols=32  Identities=25%  Similarity=0.187  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceechhHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSAGELL   44 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~~~~~   44 (196)
                      ...++.|+||+||||+.+.|.   +-..+..+++.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~---~~~~~~T~~vs  127 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAIN---PGLKLRVSEVS  127 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHS---TTCCCC-----
T ss_pred             CeEEEECCCCCCHHHHHHhhc---chhhhhccCcc
Confidence            467889999999999999998   54444444443

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0002  Score=47.74  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +.|++.|.+|+||||+++.+.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~   22 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFG   22 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHh
Confidence            578899999999999999887

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0002  Score=47.76  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+|+||||+++.+..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5788999999999999998873

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00021  Score=47.51  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+|+||||++..|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            6799999999999999999884

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00019  Score=47.53  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+|+||||+++.+..
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHh
Confidence            4688899999999999999884

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=0.00023  Score=48.17  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+||||||+++.+..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6789999999999999998874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.0002  Score=48.95  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|+|.|.+||||||+++.|..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            6789999999999999998874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.99  E-value=0.00025  Score=54.27  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +|++.||.||||||.+..+.+..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhhh
Confidence            67779999999999999999887

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00026  Score=47.21  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|++.|.+|+||||++..|..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36789999999999999999884

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00026  Score=52.32  Aligned_cols=27  Identities=22%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             CCce-EEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPF-ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~-~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+|. .+.+.||+|+|||.+++.|++.+
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            3444 66788999999999999999986

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.98  E-value=0.00014  Score=54.11  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -|+|.|++||||||+++.|....
T Consensus       168 nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEeeccccchHHHHHHhhhc
Confidence            47889999999999999999665

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00028  Score=47.11  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|++.|.+|+||||+++.+..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999998874

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00023  Score=47.75  Aligned_cols=20  Identities=30%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~   30 (196)
                      +|+|.|.+|+||||+.++|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~   26 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLL   26 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57889999999999999998

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00024  Score=47.64  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+||||||+++.+..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999988874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.00014  Score=49.15  Aligned_cols=19  Identities=26%  Similarity=0.408  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHHH
Q 029287           12 CFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~   30 (196)
                      |+|+|.+||||||+.+.|.
T Consensus         4 VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999997

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=3.5e-05  Score=52.76  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.+|+|++||||||++.+|.=-+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            55779999999999999998554

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00033  Score=46.57  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+.|++.|.+|+||||+++.+...
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            467899999999999999998753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.94  E-value=0.00026  Score=50.12  Aligned_cols=24  Identities=29%  Similarity=0.256  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++.|.|+|||||||++-.++.+.
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            578889999999999999888764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00031  Score=46.72  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|+|.|.+|+||||+.+.|..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            36788999999999999999884

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.94  E-value=0.00028  Score=50.64  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..++.|+|+|.+||||||+++.|.
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHh
Confidence            356889999999999999999998

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.93  E-value=0.00014  Score=54.11  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+.|.|+||+||||+++.++.-+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            46779999999999999999755

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00019  Score=50.48  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .++.|.|+|||||||++..++..
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57888999999999999888743

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.90  E-value=0.00043  Score=50.14  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+++|.|+.|.||||+|+.+.++
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999998765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0003  Score=47.24  Aligned_cols=23  Identities=17%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|++.|.+|+||||+.+.|..
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            36799999999999999999874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00034  Score=46.84  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      +.|++.|.+|+||||+++.+.
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            678999999999999999887

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00036  Score=47.73  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -++|+|+||+|||+++..|+...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            56789999999999999999865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=9.6e-05  Score=48.77  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +.|+|.|.+|+||||+.++|...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999854

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00037  Score=47.52  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...|+|.|.+||||||++..+.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            3678899999999999999983

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.0002  Score=48.04  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=10.6

Q ss_pred             ceEEEEEcCCCCChHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+.|++.|.+||||||+++.|.
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             EEEEEEECCCCC----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHH
Confidence            4678999999999999999887

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00039  Score=46.67  Aligned_cols=23  Identities=17%  Similarity=0.118  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..|+|.|.+|+||||++..+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46788999999999999988854

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00053  Score=48.37  Aligned_cols=23  Identities=17%  Similarity=0.147  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .++.|.|+||||||+++..++.+
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            68888999999999999999865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.81  E-value=0.00046  Score=45.98  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|+|.|.+|+||||+++.+..
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            36889999999999999999874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00042  Score=46.12  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +..|++.|.+|+||||+++.+..
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            35788999999999999998874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00024  Score=47.47  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      +.|++.|.+|+||||+++.+..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6789999999999999988763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.0005  Score=45.81  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .+.|++.|.+||||||++..+..
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            37888999999999999998874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00055  Score=45.54  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..|++.|.+|+||||+++.+...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46788999999999999998853

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.72  E-value=0.00062  Score=47.74  Aligned_cols=24  Identities=33%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+|+|.|.+.|||||++..|....
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            469999999999999999998653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00043  Score=52.63  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      -+.+|+|++||||||+..+|.
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            367889999999999999986

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00054  Score=49.32  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      --++|+|+||+|||+++..|+..+
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            356689999999999999999875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.67  E-value=0.00059  Score=47.63  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ...|+|.|.+||||||+++.+...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC
Confidence            467889999999999999988643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.65  E-value=0.00052  Score=48.17  Aligned_cols=24  Identities=25%  Similarity=0.141  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++.|.|+||+||||++..++-+.
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            588889999999999999999764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.00067  Score=45.66  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +.|++.|.+|+||||+...+...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            56888999999999999988753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0006  Score=46.35  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..|++.|.+|+||||++..+...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57889999999999999888743

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.60  E-value=0.00056  Score=46.06  Aligned_cols=21  Identities=19%  Similarity=0.153  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..|+|.|.+.|||||+.+.|.
T Consensus         6 inIaiiG~~naGKSTL~n~L~   26 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLT   26 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEEeCCCCcHHHHHHHHH
Confidence            469999999999999999998

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.59  E-value=0.00015  Score=51.07  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ...++.|+||+||||+.+.|.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCccHHHHHHhhc
Confidence            466789999999999999998

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00083  Score=50.47  Aligned_cols=21  Identities=48%  Similarity=0.830  Sum_probs=16.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+.+|.|+||+||||+...+.
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHH
Confidence            477889999999999875543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.00086  Score=47.30  Aligned_cols=23  Identities=17%  Similarity=0.106  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+++|+||++|||||.++.++-.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHH
Confidence            56788999999999999988744

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.50  E-value=0.0007  Score=49.18  Aligned_cols=16  Identities=50%  Similarity=0.908  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChHHHHH
Q 029287           12 CFVLGGPGSGKGTQCA   27 (196)
Q Consensus        12 i~i~G~~GsGKST~~~   27 (196)
                      +.|.|++||||||++-
T Consensus        17 ~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEECCCTTSCHHHHHH
T ss_pred             EEEEeeCCccHHHHHH
Confidence            4567999999998753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.0009  Score=45.35  Aligned_cols=24  Identities=25%  Similarity=0.210  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +.|++.|.+|+||||++..+....
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            678889999999999999997653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.00079  Score=51.35  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHH
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~   30 (196)
                      .+..|+|+|.+|+||||+.+.|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            46889999999999999999998

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.48  E-value=0.00078  Score=46.90  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      .++.|.|+||||||+++..++.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            5788899999999999976553

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.48  E-value=0.00098  Score=47.91  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -+++|.|+||+||||++..++-++
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhh
Confidence            467889999999999998888653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.47  E-value=0.00093  Score=48.78  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +..|.++|+|.|.|||||+-++|...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            35689999999999999999999954

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.47  E-value=0.00053  Score=50.32  Aligned_cols=16  Identities=31%  Similarity=0.598  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChHHHHH
Q 029287           12 CFVLGGPGSGKGTQCA   27 (196)
Q Consensus        12 i~i~G~~GsGKST~~~   27 (196)
                      +.|.|++||||||++-
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            4567999999998763

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.44  E-value=0.0013  Score=45.08  Aligned_cols=32  Identities=13%  Similarity=0.010  Sum_probs=26.4

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      +...+++.||+++|||+++..|.+.++-..++
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            44688889999999999999999988655444

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0011  Score=44.42  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..|++.|.+|+||||++..+..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            6889999999999999998874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.35  E-value=0.0011  Score=46.36  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +++|+||+.|||||+++.+.-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            6788999999999999977643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.32  E-value=0.0013  Score=45.24  Aligned_cols=25  Identities=20%  Similarity=0.084  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ..|+|.|.++|||||++..|....|
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            5699999999999999999975543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0022  Score=44.07  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             eEEEEEcCC-CCChHHHHHHHHHHh
Q 029287           10 FICFVLGGP-GSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~-GsGKST~~~~L~~~~   33 (196)
                      +++.|+|.. |+||||++-.|+..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            578889995 999999999999887

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.0015  Score=47.19  Aligned_cols=24  Identities=33%  Similarity=0.542  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .|.++|+|.|.+||||+-++|+..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCC
Confidence            579999999999999999999943

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.21  E-value=0.0027  Score=40.43  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      ...+|.+|.|||||+++-.+....|
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~   33 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQG   33 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTT
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            5667799999999999876665555

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.20  E-value=0.0017  Score=43.69  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..|++.|..|+||||+++.+...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            57888999999999999998754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0019  Score=46.22  Aligned_cols=24  Identities=13%  Similarity=0.230  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+..|.|++|+||||++-.|+..+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            366789999999999999888764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.0023  Score=43.79  Aligned_cols=26  Identities=8%  Similarity=-0.083  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.-+.+.|++|+||||++..|++..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45677889999999999999999765

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.0027  Score=45.49  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++-|.|+|||||||+|-.++...
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHH
Confidence            688899999999999999888765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.89  E-value=0.0033  Score=45.12  Aligned_cols=29  Identities=14%  Similarity=0.189  Sum_probs=24.6

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNYGLT   36 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~~~~   36 (196)
                      +...+.+.||+++||||++..|.+.+|-.
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            34577789999999999999999988653

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0044  Score=44.59  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .|.+|++.|-=|+||||++..|+..+
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHH
Confidence            46788899999999999988888777

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.70  E-value=0.0026  Score=48.18  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ++|+|+||+|||+++.-|+...
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHH
Confidence            4668999999999999999765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.70  E-value=0.0048  Score=44.42  Aligned_cols=27  Identities=19%  Similarity=0.042  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      -+-|+|.|..||||||++..|...-|.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            357999999999999999999866553

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.63  E-value=0.0049  Score=44.17  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYG   34 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~   34 (196)
                      +.|+|.|..||||||++..|.-.-|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            4689999999999999999975444

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.58  E-value=0.0034  Score=46.04  Aligned_cols=21  Identities=29%  Similarity=0.311  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      |.|+|.|.|.|||||+-++|.
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt   21 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAAT   21 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEeEECCCCCCHHHHHHHHH
Confidence            469999999999999999998

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.55  E-value=0.0043  Score=43.91  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.|.|++|+||+++|+.|...-
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCcCHHHHHHHHHHhc
Confidence            46778999999999999998653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.0045  Score=47.19  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -++|+|++|||||+.+..+....
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHH
Confidence            37889999999999987665543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0055  Score=44.29  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++|.|++|+||||++..+++..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHH
Confidence            67889999999999999999754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.34  E-value=0.0051  Score=41.71  Aligned_cols=21  Identities=19%  Similarity=0.142  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..|+|.|...+||||++..|.
T Consensus         6 inIaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEeccCCcHHHHHHHHH
Confidence            468999999999999999997

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.26  E-value=0.0056  Score=43.86  Aligned_cols=25  Identities=28%  Similarity=0.231  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..++-|.|++||||||+|-.++...
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHHHH
Confidence            3688999999999999998888664

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0054  Score=44.17  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .+|+|+|+.+|||||++..|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            58999999999999999999854

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.11  E-value=0.0088  Score=42.80  Aligned_cols=25  Identities=28%  Similarity=0.227  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ..++-|.|++||||||+|-.++...
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHH
Confidence            4688899999999999998777654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.07  E-value=0.0083  Score=40.83  Aligned_cols=23  Identities=30%  Similarity=0.200  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..|+|.|...+||||++..|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            46999999999999999999754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.012  Score=41.88  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+..+|++.|-=|+||||++-.|+..+
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            355788989999999999988887776

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.99  E-value=0.0074  Score=43.87  Aligned_cols=28  Identities=32%  Similarity=0.393  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCceech
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTHLSA   40 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~i~~   40 (196)
                      +.|+++|.-+|||||++.+|.   |..++..
T Consensus        25 P~ivVvG~~ssGKSSliNaLl---G~~~lP~   52 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIV---GRDFLPR   52 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHH---TSCCCCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHh---CCCCCCC
Confidence            356779999999999999999   8776443

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.98  E-value=0.011  Score=40.42  Aligned_cols=21  Identities=29%  Similarity=0.200  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCAKIV   30 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~   30 (196)
                      ..|+|.|...+||||++..|.
T Consensus         9 ini~iiGhVd~GKSTL~~~L~   29 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAIT   29 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEEccCCcHHHHHHHHH
Confidence            579999999999999999997

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.95  E-value=0.012  Score=41.79  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      |+.|+|.|-=|+||||++-.|+..+
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~L   25 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGL   25 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHH
Confidence            4688899999999999998888776

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=94.88  E-value=0.013  Score=40.74  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      ..|++.|...+||||++..|....|.
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            56888999999999999999866654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.82  E-value=0.013  Score=40.35  Aligned_cols=24  Identities=29%  Similarity=0.232  Sum_probs=20.2

Q ss_pred             eEEEEE-cCCCCChHHHHHHHHHHh
Q 029287           10 FICFVL-GGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~-G~~GsGKST~~~~L~~~~   33 (196)
                      ++|++. |--|+||||++..|+..+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHH
Confidence            567666 788999999999888776

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=94.77  E-value=0.0039  Score=39.31  Aligned_cols=17  Identities=24%  Similarity=0.321  Sum_probs=14.2

Q ss_pred             eEEEEEcCCCCChHHHH
Q 029287           10 FICFVLGGPGSGKGTQC   26 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~   26 (196)
                      ...+|.+|+|||||+++
T Consensus         8 ~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             CEEEECCCTTSSTTTTH
T ss_pred             CcEEEEcCCCCChhHHH
Confidence            56677999999999766

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0076  Score=43.88  Aligned_cols=18  Identities=28%  Similarity=0.414  Sum_probs=14.9

Q ss_pred             eEEEEEcCCCCChHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCA   27 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~   27 (196)
                      -+-+++|.||+||||++.
T Consensus        15 ~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             CEEEEECSTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            355679999999999874

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.69  E-value=0.014  Score=40.45  Aligned_cols=26  Identities=23%  Similarity=0.446  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      ..|++.|..++||||++..|.-..|.
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            46899999999999999998765554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.68  E-value=0.015  Score=41.64  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~   31 (196)
                      ..+..++++|.|.+||||+.+.|..
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCceEEEEEecCccchhhhhhhhhc
Confidence            3457899999999999999999993

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.58  E-value=0.013  Score=39.44  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=16.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHH
Q 029287           12 CFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .++.+|.|||||.++-.++..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~   46 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEY   46 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHH
Confidence            346799999999987766643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.54  E-value=0.012  Score=41.43  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLT   36 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~   36 (196)
                      -|+|.|..++||||++..|.-..|..
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~~~g~i   51 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILFLTGMV   51 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHHHTTSS
T ss_pred             EEEEEeeCCCCHHHHHHHHHHHcCCc
Confidence            48999999999999999997666643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.53  E-value=0.009  Score=43.66  Aligned_cols=18  Identities=33%  Similarity=0.429  Sum_probs=15.1

Q ss_pred             eEEEEEcCCCCChHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCA   27 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~   27 (196)
                      -+-+++|.||+||||++.
T Consensus        15 d~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CEEEEECCTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            355679999999999984

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.26  Score=34.09  Aligned_cols=26  Identities=19%  Similarity=0.080  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +.++...|.|..|||||-++-.....
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            45678888999999999998777755

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.44  E-value=0.012  Score=42.59  Aligned_cols=25  Identities=32%  Similarity=0.489  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcee
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNYGLTHL   38 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~~~~~i   38 (196)
                      .|+++|.-+|||||++++|.   |..++
T Consensus        28 ~ivvvG~~SsGKSsliNaLl---g~~~l   52 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFV---GRDFL   52 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHH---TSCCS
T ss_pred             eEEEEcCCCCCHHHHHHHHh---CCCcC
Confidence            46679999999999999999   76654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.31  E-value=0.0082  Score=43.85  Aligned_cols=18  Identities=28%  Similarity=0.414  Sum_probs=15.1

Q ss_pred             eEEEEEcCCCCChHHHHH
Q 029287           10 FICFVLGGPGSGKGTQCA   27 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~   27 (196)
                      -+-+++|.||+||||++.
T Consensus        15 ~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             CEEEEEccCCCCcccccc
Confidence            456779999999999765

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.29  E-value=0.019  Score=40.30  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      .-|++.|..++||||++..|.-..|.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            68999999999999999999866664

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.08  E-value=0.014  Score=39.05  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +|.|+|+.+||||..+..|+..
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS
T ss_pred             CEEEECCCCccHHHHHHHHHhc
Confidence            3678999999999999988744

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.81  E-value=0.022  Score=40.73  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +++|+|++|+||||++..++...
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            57889999999999999888663

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=93.77  E-value=0.02  Score=46.38  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      =.|+|.|-+|||||+-++.+.+++
T Consensus        87 QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368889999999999999999887

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.63  E-value=0.033  Score=39.83  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      |++|+|.|-=|+||||++-.|+..+
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~L   26 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAAL   26 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678889999999999888777665

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.61  E-value=0.022  Score=46.33  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      =.|+|.|-+|||||+-++.+.+++
T Consensus        92 Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          92 QSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            468889999999999999999887

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.54  E-value=0.036  Score=38.07  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             eEEEEE-cCCCCChHHHHHHHHHHh
Q 029287           10 FICFVL-GGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~-G~~GsGKST~~~~L~~~~   33 (196)
                      ++|++. +--|+||||++..|+..+
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHH
Confidence            577777 668999999999998877

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.45  E-value=0.023  Score=41.98  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      +-|+|.|..|+||||++..|...-|.
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g~   43 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAGI   43 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBC
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCCC
Confidence            56999999999999999999876664

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.36  E-value=0.026  Score=45.91  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -.|+|.|-+|||||.-++.+.+++
T Consensus       126 QsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         126 QSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHH
Confidence            478889999999999999999887

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.30  E-value=0.025  Score=46.61  Aligned_cols=24  Identities=17%  Similarity=0.484  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      =.|+|.|-+|||||+-++.+.+++
T Consensus       124 QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         124 QSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            367889999999999999999887

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.03  E-value=0.013  Score=39.82  Aligned_cols=17  Identities=12%  Similarity=0.026  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCChHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCA   27 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~   27 (196)
                      -+++.+|+|||||+++.
T Consensus        42 ~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CEEEECSSHHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHHH
Confidence            35679999999998864

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=92.82  E-value=0.035  Score=45.33  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +-.|+|.|-+|||||+-++.+.+++
T Consensus        94 ~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          94 NQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999887

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.74  E-value=0.036  Score=45.63  Aligned_cols=24  Identities=25%  Similarity=0.553  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      -.|+|.|-+|||||.-++.+.+++
T Consensus       122 Q~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         122 QSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478889999999999999999887

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.56  E-value=0.64  Score=32.64  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHH
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      ..+|...|.|-.|||||-++-..+..
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~~~  127 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAILD  127 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred             cCcceeeeeccccccccHHHHHHHHH
Confidence            35677778999999999998776644

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.047  Score=37.42  Aligned_cols=25  Identities=20%  Similarity=0.096  Sum_probs=21.4

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      +..++|+|+|..  ||||+..+|+.-|
T Consensus         3 ~~~~vI~ITGT~--GKTTt~~~l~~iL   27 (234)
T d1e8ca3           3 DNLRLVGVTGTN--GKTTTTQLLAQWS   27 (234)
T ss_dssp             GSSEEEEEESSS--CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCC--cHHHHHHHHHHHH
Confidence            456899999998  9999999998665

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.32  E-value=0.055  Score=36.70  Aligned_cols=24  Identities=17%  Similarity=0.202  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCC
Q 029287           12 CFVLGGPGSGKGTQCAKIVKNYGL   35 (196)
Q Consensus        12 i~i~G~~GsGKST~~~~L~~~~~~   35 (196)
                      .+|.+|+|||||-++-.+..+++.
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~~~  111 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINELST  111 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHSCS
T ss_pred             cEEEeCCCCCceehHHhHHHHhcC
Confidence            346789999999998888887753

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.10  E-value=0.033  Score=38.64  Aligned_cols=21  Identities=14%  Similarity=0.033  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVK   31 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~   31 (196)
                      -+++.+|+|||||+++-..+-
T Consensus        60 ~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          60 SFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             CEECCCCBTSCSHHHHHHHHH
T ss_pred             CEEEEecCCChHHHHHHHHHH
Confidence            355689999999987665553

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.98  E-value=0.16  Score=29.89  Aligned_cols=33  Identities=12%  Similarity=0.121  Sum_probs=26.6

Q ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHhCCceec
Q 029287            6 GKGPFICFVLGGPGSGKGTQCAKIVKNYGLTHLS   39 (196)
Q Consensus         6 ~~~~~~i~i~G~~GsGKST~~~~L~~~~~~~~i~   39 (196)
                      ....+.|-+.|.-|||-|.+|+.|.+. |+.+--
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsG   37 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNE-GYQISG   37 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhC-CCEEEE
Confidence            345578888999999999999999887 775543

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.1  Score=35.06  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      ++|+|+|..  ||||++.+|+.-|
T Consensus         3 kvI~VTGTn--GKTTt~~mi~~iL   24 (214)
T d1gg4a4           3 RVVALTGSS--GKTSVKEMTAAIL   24 (214)
T ss_dssp             EEEEEECSS--CHHHHHHHHHHHH
T ss_pred             CEEEEeCCC--cHHHHHHHHHHHH
Confidence            589999998  9999999999877

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.77  E-value=0.1  Score=35.11  Aligned_cols=24  Identities=25%  Similarity=0.124  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            8 GPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         8 ~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+.+|+|+|.+  ||||++.+|+.-+
T Consensus        13 ~~~~iAITGTn--GKTTt~~~l~~iL   36 (207)
T d1j6ua3          13 KKEEFAVTGTD--GKTTTTAMVAHVL   36 (207)
T ss_dssp             CCCEEEEECSS--SHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC--CHHHHHHHHHHHH
Confidence            34689999988  9999999998655

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.16  Score=31.82  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+-+|+||-.|||||-+-.....+
T Consensus         3 ~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           3 QIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEEecccCHHHHHHHHHHHHH
Confidence            456779999999999877766665

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=90.41  E-value=0.072  Score=37.97  Aligned_cols=16  Identities=25%  Similarity=0.322  Sum_probs=13.4

Q ss_pred             ceEEEEEcCCCCChHH
Q 029287            9 PFICFVLGGPGSGKGT   24 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST   24 (196)
                      ...++|.+|+|||||+
T Consensus         9 ~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           9 KRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TCEEEECCCTTSSTTT
T ss_pred             CCcEEEEECCCCCHHH
Confidence            3567779999999996

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.28  E-value=0.073  Score=38.16  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      +++|+|++|+|||+++..+...
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            5678999999999998777643

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.74  E-value=0.25  Score=31.33  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+-+|+||-.|||||-+-....++
T Consensus         8 ~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           8 WVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeccccHHHHHHHHHHHHh
Confidence            567789999999999887777666

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.19  E-value=0.22  Score=31.48  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+-+|+||-.|||||-+-....++
T Consensus         3 ~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           3 WIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEEccccCHHHHHHHHHHHHH
Confidence            456789999999999655555444

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=89.13  E-value=0.18  Score=33.65  Aligned_cols=23  Identities=22%  Similarity=0.175  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++|+|+|..  ||||...+|+.-+
T Consensus        11 ~~vI~VTGT~--GKTTt~~~l~~iL   33 (204)
T d2jfga3          11 APIVAITGSN--GKSTVTTLVGEMA   33 (204)
T ss_dssp             SCEEEEECSS--SHHHHHHHHHHHH
T ss_pred             CCEEEEECCC--CHHHHHHHHHHHH
Confidence            3589999988  9999999998766

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.04  E-value=0.072  Score=38.02  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCAKIVKN   32 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~~L~~~   32 (196)
                      .++|+|++|+|||+++..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            4677999999999998766543

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.88  E-value=0.19  Score=33.93  Aligned_cols=23  Identities=35%  Similarity=0.234  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            9 PFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         9 ~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .++|+|+|..  ||||+..+|+.-+
T Consensus        12 ~~~I~ITGTn--GKTTt~~~l~~iL   34 (215)
T d1p3da3          12 RHGIAVAGTH--GKTTTTAMISMIY   34 (215)
T ss_dssp             SEEEEEESSS--CHHHHHHHHHHHH
T ss_pred             CCEEEEECCC--CHHHHHHHHHHHH
Confidence            4689999987  9999999888555

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=88.21  E-value=0.16  Score=36.40  Aligned_cols=25  Identities=24%  Similarity=0.275  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHh
Q 029287            7 KGPFICFVLGGPGSGKGTQCAKIVKNY   33 (196)
Q Consensus         7 ~~~~~i~i~G~~GsGKST~~~~L~~~~   33 (196)
                      .+..+|+|+|.+  ||||++.+|+.-+
T Consensus        37 ~~lkvI~VTGTN--GKtST~~~i~~IL   61 (296)
T d2gc6a2          37 QQGRYIHVTGTN--GKGSAANAIAHVL   61 (296)
T ss_dssp             GSSCEEEEECSS--SHHHHHHHHHHHH
T ss_pred             hhCCEEEEeccC--cHHHHHHHHHHHH
Confidence            345799999999  9999999998766

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=85.02  E-value=0.16  Score=32.62  Aligned_cols=23  Identities=43%  Similarity=0.576  Sum_probs=18.4

Q ss_pred             ceEEEEEcCCCC-ChHHHHHHHHHH
Q 029287            9 PFICFVLGGPGS-GKGTQCAKIVKN   32 (196)
Q Consensus         9 ~~~i~i~G~~Gs-GKST~~~~L~~~   32 (196)
                      |..|+|.|.+|| |++|+ ..+.++
T Consensus         2 pK~I~IlGsTGSIG~~tL-~Vi~~~   25 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTL-DLIERN   25 (150)
T ss_dssp             CEEEEEETTTSHHHHHHH-HHHHHT
T ss_pred             CcEEEEECCCcHHHHHHH-HHHHcC
Confidence            689999999999 88887 556543

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=84.82  E-value=0.49  Score=35.56  Aligned_cols=27  Identities=19%  Similarity=0.274  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLT   36 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~   36 (196)
                      ....|.|.+|||||.++..+.++.+.+
T Consensus        32 ~~q~l~GltGS~ka~~iA~l~~~~~rp   58 (413)
T d1t5la1          32 KHQTLLGATGTGKTFTISNVIAQVNKP   58 (413)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred             CcEEEeCCCCcHHHHHHHHHHHHhCCC
Confidence            456789999999999999999998643

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.46  E-value=0.27  Score=37.10  Aligned_cols=17  Identities=24%  Similarity=0.286  Sum_probs=13.4

Q ss_pred             EEEEEcCCCCChHHHHH
Q 029287           11 ICFVLGGPGSGKGTQCA   27 (196)
Q Consensus        11 ~i~i~G~~GsGKST~~~   27 (196)
                      ..+|.+..|||||+++-
T Consensus        18 ~~lv~A~AGsGKT~~l~   34 (485)
T d1w36b1          18 ERLIEASAGTGKTFTIA   34 (485)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEEcCchHHHHHHH
Confidence            45668999999998653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.23  E-value=0.34  Score=28.00  Aligned_cols=27  Identities=19%  Similarity=0.163  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCce
Q 029287           10 FICFVLGGPGSGKGTQCAKIVKNYGLTH   37 (196)
Q Consensus        10 ~~i~i~G~~GsGKST~~~~L~~~~~~~~   37 (196)
                      |.|-++|--|+|-|.+|+.|.+. |+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~-G~~V   28 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSN-GNDV   28 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEE
T ss_pred             cEEEEEeECHHHHHHHHHHHHhC-CCeE
Confidence            46778999999999999988876 7654

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.80  E-value=0.2  Score=33.71  Aligned_cols=14  Identities=21%  Similarity=0.242  Sum_probs=11.7

Q ss_pred             EEEEcCCCCChHHH
Q 029287           12 CFVLGGPGSGKGTQ   25 (196)
Q Consensus        12 i~i~G~~GsGKST~   25 (196)
                      +++..|+|||||..
T Consensus        41 vii~a~TGSGKTla   54 (209)
T d1q0ua_          41 MVGQSQTGTGKTHA   54 (209)
T ss_dssp             EEEECCSSHHHHHH
T ss_pred             eEeeccccccccee
Confidence            56689999999974