Citrus Sinensis ID: 029299

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Secondary Structure (PSIPRED)
ccHHHHHHHcccEEEEEccccccccccccEEcccccccccccccccEEEEcccccccccccccEEEEcccccHHHHcccHHHHHHHHHHHHccccEEEEccHHHHHHHHcccccEEEEEccccHHHHHHcccEEEccccccEEEEcccEEEccccccHHHHHHHHHHHHcccccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccEEEEEccccccccEEEEEEEccccccccccccccEEEccEEHHHccHHHccEEEEccEcHHHHHcccHHHHHHHHHHHHccccEEEEccccHHHHHHccccccEEcccHHHHHHHHHcccEEcccccEHcEEEcccEEccccccccHHHHHHHHHHHccEEEccccEEEEEEcccEEHHHHcc
Coil and Loop (DISEMBL)
MVPFQALLAFgvsvdaacpgkksgdvcptavhqstghqtysetrghnfalnatfdeidptkydglvipggrapeylamnDSVIDLVRKFSNSGKTIASICHGQLILAAADVvkgrkctayppvkpVLIAagaswiepetMAACVvdgniitgatyegHPEFIRLFLKAlggtitgsdkRILFLCGVSFCFQNLLE
Flexible Loop (DISEMBL)
MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQstghqtysetrGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Low Complexity Region (SEG)
MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Disordered region (IsUnstruct)
***FQALLAFGVSVDAACPGKKSGDVCPTAVH******TYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNL**
Disordered Region (DISOPRED)
MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Disordered Region (DISEMBL)
MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Disordered Region (DISPRO)
MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q9M8R4	388	Protein DJ-1 homolog D OS	yes	no	0.948	0.476	0.745	8e-79
O59413	166	Intracellular protease 1	yes	no	0.717	0.843	0.359	4e-24
Q51732	166	Intracellular protease 1	yes	no	0.697	0.819	0.366	9e-24
Q9V1F8	166	Intracellular protease 1	yes	no	0.6	0.704	0.392	1e-22
Q5JGM7	166	Intracellular protease 1	yes	no	0.697	0.819	0.385	5e-22
P45470	172	Protein YhbO OS=Escherich	N/A	no	0.605	0.686	0.373	9e-18
O28987	168	Uncharacterized protein A	yes	no	0.676	0.785	0.345	3e-17
Q58377	205	Uncharacterized protein M	yes	no	0.666	0.634	0.34	9e-14
O06006	169	Putative cysteine proteas	yes	no	0.620	0.715	0.312	2e-12
P80876	172	General stress protein 18	no	no	0.707	0.802	0.269	5e-12

>sp|Q9M8R4|DJ1D_ARATH Protein DJ-1 homolog D OS=Arabidopsis thaliana GN=DJ1D PE=1 SV=1

 Score =  292 bits (748), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 138/185 (74%), Positives = 157/185 (84%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQAL AFG++V   CPGKK+GD CPTAVH   GHQTY E+RGHNF LNATFDE+D +
Sbjct: 21  MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLS 80

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK IASICHGQLILAAAD V GRKCTAY
Sbjct: 81  KYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAY 140

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
             V P L+AAGA W+EP T   CVVDG++IT ATYEGHPEFI+LF+KALGG ITG++KRI
Sbjct: 141 ATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRI 200

Query: 181 LFLCG 185
           LFLCG
Sbjct: 201 LFLCG 205

May be involved in oxidative stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|O59413|PFPI_PYRHO Intracellular protease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pfpI PE=1 SV=1

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 13/153 (8%)

Query: 26  VCPTAVHQSTGHQTY---------SETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL 76
           + P    +  GH+ Y         +   G++  ++ TFD+++P ++D LV+PGGRAPE +
Sbjct: 17  IYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERV 76

Query: 77  AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 136
            +N+  + + RK  + GK +ASICHG  IL +A V++GRK T+YP +K  +I AG  W++
Sbjct: 77  RLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVD 136

Query: 137 PETMAACVVDGNIITGATYEGHPEFIRLFLKAL 169
            E     VVDGN ++         ++R F+K L
Sbjct: 137 AE----VVVDGNWVSSRVPADLYAWMREFVKLL 165

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q51732|PFPI_PYRFU Intracellular protease 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pfpI PE=1 SV=1

 Score =  110 bits (274), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 17/153 (11%)

Query: 26  VCPTAVHQSTGHQTY---------SETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL 76
           + P    +  GH+ Y         +   G++  ++ TFDE++P ++D LV+PGGRAPE +
Sbjct: 17  IYPYHRLKEEGHEVYIASFEKGVITGKHGYSVKVDLTFDEVNPDEFDALVLPGGRAPERV 76

Query: 77  AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 136
            +N+  +++ RK    GK +A+ICHG  IL +A V+KGRK T+Y  ++  +I AG  WI+
Sbjct: 77  RLNEKAVEIARKMFTEGKPVATICHGPQILISAGVLKGRKGTSYIGIRDDMINAGVEWID 136

Query: 137 PETMAACVVDGNIIT----GATYEGHPEFIRLF 165
            E     VVDGN ++    G  Y    EF++L 
Sbjct: 137 RE----VVVDGNWVSSRHPGDLYAWMREFVKLL 165

Highly stable protease. Although the physiological function is unclear it is the dominant protease in P.furiosus.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q9V1F8|PFPI_PYRAB Intracellular protease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pfpI PE=3 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 80/125 (64%), Gaps = 8/125 (6%)

Query: 45  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104
           G+   ++  F+E++P ++D LV+PGGRAPE + +N+  +++ +K  + GK +ASICHG  
Sbjct: 45  GYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQ 104

Query: 105 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPE 160
           IL +A V++GR+ T+YP +K  +I AG  W++ E     VVDGN ++    G  Y    E
Sbjct: 105 ILISAGVLRGRRGTSYPGIKDDMINAGVDWVDAE----VVVDGNWVSSRVPGDLYAWMRE 160

Query: 161 FIRLF 165
           F++L 
Sbjct: 161 FVKLL 165

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q5JGM7|PFPI_PYRKO Intracellular protease 1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pfpI PE=3 SV=1

 Score =  103 bits (258), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 86/153 (56%), Gaps = 17/153 (11%)

Query: 26  VCPTAVHQSTGHQTY--SETRG-----HNFALNA--TFDEIDPTKYDGLVIPGGRAPEYL 76
           + P    +  GH+ Y  S  RG     H + +N    FDE+DP ++D LV+PGGRAPE +
Sbjct: 17  IYPLHRIKEEGHEVYVASFQRGKITGKHGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIV 76

Query: 77  AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 136
            +N+  + + +K    GK +ASICHG  IL +A V+KGRK T+   ++  +  AGA WI+
Sbjct: 77  RLNEKAVAITKKMFEDGKPVASICHGPQILISAGVLKGRKGTSTVTIRDDVKNAGAEWID 136

Query: 137 PETMAACVVDGNIIT----GATYEGHPEFIRLF 165
            E     VVDGN ++    G  Y    EF++L 
Sbjct: 137 AE----VVVDGNWVSSRHPGDLYAWMREFVKLL 165

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|P45470|YHBO_ECOLI Protein YhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2

 Score = 89.7 bits (221), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 5/123 (4%)

Query: 50  LNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109
           ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L +A
Sbjct: 54  IDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 113

Query: 110 DVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGHPEFIRLFLKA 168
           DV++GRK TA  P+   +  AGA + + E     VVD + ++T  T +  P F R  L+ 
Sbjct: 114 DVIRGRKLTAVKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPAFNREALRL 169

Query: 169 LGG 171
           LG 
Sbjct: 170 LGA 172

Escherichia coli (strain K12) (taxid: 83333)

>sp|O28987|Y1281_ARCFU Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1281 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 4/136 (2%)

Query: 34  STGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSG 93
           S+  +     +G+    + T++++    Y GLVIPGG++PE + +N+  +++V+ F   G
Sbjct: 34  SSSLEVRVGKKGYQVRPDLTYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDFLELG 93

Query: 94  KTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
           K +A+ICHG  +L +A  VKGR+ T++  ++  LIAAGA + +       VVDGN+IT  
Sbjct: 94  KPVAAICHGPQLLISAMAVKGRRMTSWIGIRDDLIAAGALYED----RPVVVDGNVITSR 149

Query: 154 TYEGHPEFIRLFLKAL 169
             +  P F    +K L
Sbjct: 150 MPDDLPYFCGELIKIL 165

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|Q58377|Y967_METJA Uncharacterized protein MJ0967 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0967 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 20/150 (13%)

Query: 28  PTAVHQSTGHQT--YSETRG-------HNFALNATFDEIDPTKYDGLVIPGGR-APEYLA 77
           P AV +S G +    S T+G       +   +  T  +++P  Y  +VI GG  + EYL 
Sbjct: 51  PMAVFESNGLKVDVVSTTKGECVGMLGNKITVEKTIYDVNPDDYVAIVIVGGIGSKEYLW 110

Query: 78  MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV--LIAAGASWI 135
            N  +I+LV++F N  K +++IC   ++LA A ++KG+K T YP  + +  L  AGA + 
Sbjct: 111 NNTKLIELVKEFYNKNKVVSAICLSPVVLARAGILKGKKATVYPAPEAIEELKKAGAIYE 170

Query: 136 EPETMAACVVDGNIITGATYEGHPEFIRLF 165
           +       VVDGN+IT  +    P++ RLF
Sbjct: 171 D----RGVVVDGNVITAKS----PDYARLF 192

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O06006|YRAA_BACSU Putative cysteine protease YraA OS=Bacillus subtilis (strain 168) GN=yraA PE=2 SV=2

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 45  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104
           G    ++    ++D + +D L+IPGG +P+ L  +D   +  + F  + K + +ICHG  
Sbjct: 48  GEKVKIDKAISDVDASDFDALLIPGGFSPDLLRADDRPGEFAKAFVENKKPVFAICHGPQ 107

Query: 105 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 164
           +L   D++KG+  T Y  ++  LI AGA++ + E     VV  NI+T  T +    F R 
Sbjct: 108 VLIDTDLLKGKDITGYRSIRKDLINAGANYKDAE----VVVSHNIVTSRTPDDLEAFNRE 163

Query: 165 FLKAL 169
            L  L
Sbjct: 164 SLNLL 168

Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|P80876|GS18_BACSU General stress protein 18 OS=Bacillus subtilis (strain 168) GN=yfkM PE=1 SV=3

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 29  TAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRK 88
           T + +  G     +       ++A+ D+++ + +D L+IPGG +P+ L  +D  +   + 
Sbjct: 33  TVIEKEKGKTVKGKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQLRADDRFVQFTKA 92

Query: 89  FSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN 148
           F    K + +ICHG  +L  A  + GRK T Y  ++  +  AGA  ++ E +   V    
Sbjct: 93  FMTDKKPVFAICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVV---VCQDQ 149

Query: 149 IITGATYEGHPEFIRLFLKAL 169
           ++T  T +  P F R  L  L
Sbjct: 150 LVTSRTPDDIPAFNRESLALL 170

Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
255570457	388	protease C56, putative [Ricinus communis	0.989	0.497	0.775	2e-88
224134735	386	predicted protein [Populus trichocarpa]	0.989	0.5	0.765	5e-86
118483416	386	unknown [Populus trichocarpa]	0.989	0.5	0.765	6e-86
359476496	529	PREDICTED: uncharacterized protein LOC10	0.948	0.349	0.810	4e-85
297738171	386	unnamed protein product [Vitis vinifera]	0.948	0.479	0.810	8e-85
449469102	390	PREDICTED: uncharacterized protein LOC10	0.948	0.474	0.789	7e-84
255570459	386	protease C56, putative [Ricinus communis	0.989	0.5	0.735	1e-80
357166678	388	PREDICTED: uncharacterized protein LOC10	0.948	0.476	0.751	2e-80
226498180	387	YLS5 [Zea mays] gi|194688460|gb|ACF78314	0.948	0.478	0.751	4e-79
194699960	368	unknown [Zea mays] gi|414584852|tpg|DAA3	0.948	0.502	0.751	6e-79

>gi|255570457|ref|XP_002526187.1| protease C56, putative [Ricinus communis] gi|223534491|gb|EEF36191.1| protease C56, putative [Ricinus communis]

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/200 (77%), Positives = 181/200 (90%), Gaps = 7/200 (3%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQALLA+GV+VDAACPGKK+GD C TA+H+S+GHQTYSE+RGHNF LN+TFD+ID  
Sbjct: 21  MVPFQALLAYGVAVDAACPGKKAGDYCRTAIHESSGHQTYSESRGHNFTLNSTFDDIDFG 80

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           KYDGLVIPGGRAPEYLAMN+SV+D VRKF+++GK IAS+CHGQLILAAA +VKGRKCTAY
Sbjct: 81  KYDGLVIPGGRAPEYLAMNESVLDCVRKFADAGKPIASVCHGQLILAAAGLVKGRKCTAY 140

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
           PPV+PVLIAAGA W+EPETMA+CV DGN+ITGATYEGHPEFI+LF+KALGG+ITG+DKRI
Sbjct: 141 PPVRPVLIAAGAHWVEPETMASCVADGNLITGATYEGHPEFIQLFVKALGGSITGADKRI 200

Query: 181 LFLCG-------VSFCFQNL 193
           LFLCG       V+  FQ+L
Sbjct: 201 LFLCGDYMEDYEVTVPFQSL 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134735|ref|XP_002327476.1| predicted protein [Populus trichocarpa] gi|222836030|gb|EEE74451.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 153/200 (76%), Positives = 175/200 (87%), Gaps = 7/200 (3%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQAL AFG++VDAACPGKK+GD+C TA+H S G+QTY+E+RGHNF LNATFDE+D  
Sbjct: 19  MVPFQALQAFGIAVDAACPGKKAGDICRTAIHDSAGYQTYTESRGHNFTLNATFDEVDFG 78

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           KYDGLVIPGGRAPEYLAMN+SV+D VRKFS+SG+ IAS+CHGQLILAAA+ VKGRKCTAY
Sbjct: 79  KYDGLVIPGGRAPEYLAMNESVLDCVRKFSDSGRPIASVCHGQLILAAANSVKGRKCTAY 138

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
           P VKPVLI AGA W+EPETM ACV DGNIITGATYEGHPEFI+LF++ALGG ITGSDK+I
Sbjct: 139 PAVKPVLIDAGAHWVEPETMKACVADGNIITGATYEGHPEFIQLFVRALGGKITGSDKKI 198

Query: 181 LFLCG-------VSFCFQNL 193
           LFLCG       V+  FQ+L
Sbjct: 199 LFLCGDFMEDYEVTVPFQSL 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483416|gb|ABK93608.1| unknown [Populus trichocarpa]

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 153/200 (76%), Positives = 175/200 (87%), Gaps = 7/200 (3%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQAL AFG++VDAACPGKK+GD+C TA+H S G+QTY+E+RGHNF LNATFDE+D  
Sbjct: 19  MVPFQALQAFGIAVDAACPGKKAGDICRTAIHDSAGYQTYTESRGHNFTLNATFDEVDFG 78

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           KYDGLVIPGGRAPEYLAMN+SV+D VRKFS+SG+ IAS+CHGQLILAAA+ VKGRKCTAY
Sbjct: 79  KYDGLVIPGGRAPEYLAMNESVLDCVRKFSDSGRPIASVCHGQLILAAANSVKGRKCTAY 138

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
           P VKPVLI AGA W+EPETM ACV DGNIITGATYEGHPEFI+LF++ALGG ITGSDK+I
Sbjct: 139 PAVKPVLIDAGAHWVEPETMKACVADGNIITGATYEGHPEFIQLFVRALGGKITGSDKKI 198

Query: 181 LFLCG-------VSFCFQNL 193
           LFLCG       V+  FQ+L
Sbjct: 199 LFLCGDFMEDYEVTVPFQSL 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476496|ref|XP_002272841.2| PREDICTED: uncharacterized protein LOC100247956 [Vitis vinifera]

 Score =  319 bits (817), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 150/185 (81%), Positives = 167/185 (90%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQALLA+GVSV A CPGKK+GDVC TAVHQ  GHQTYSE+RGHNF +NATFDE+D +
Sbjct: 162 MVPFQALLAYGVSVHAVCPGKKAGDVCRTAVHQGLGHQTYSESRGHNFTVNATFDEVDAS 221

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           KYDGLVIPGGRAPEYLAMN+SV+DLVRKF +SGK IASICHGQLILAA+  V+GRKCTAY
Sbjct: 222 KYDGLVIPGGRAPEYLAMNESVLDLVRKFFSSGKPIASICHGQLILAASGSVRGRKCTAY 281

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
           P V P LIAAGA W+EPETM+ACV+DGN+IT ATY GHP FI+LF+KALGGTITGSDKRI
Sbjct: 282 PAVGPALIAAGAHWVEPETMSACVIDGNLITAATYIGHPGFIQLFVKALGGTITGSDKRI 341

Query: 181 LFLCG 185
           LFLCG
Sbjct: 342 LFLCG 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738171|emb|CBI27372.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (815), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 150/185 (81%), Positives = 167/185 (90%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQALLA+GVSV A CPGKK+GDVC TAVHQ  GHQTYSE+RGHNF +NATFDE+D +
Sbjct: 19  MVPFQALLAYGVSVHAVCPGKKAGDVCRTAVHQGLGHQTYSESRGHNFTVNATFDEVDAS 78

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           KYDGLVIPGGRAPEYLAMN+SV+DLVRKF +SGK IASICHGQLILAA+  V+GRKCTAY
Sbjct: 79  KYDGLVIPGGRAPEYLAMNESVLDLVRKFFSSGKPIASICHGQLILAASGSVRGRKCTAY 138

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
           P V P LIAAGA W+EPETM+ACV+DGN+IT ATY GHP FI+LF+KALGGTITGSDKRI
Sbjct: 139 PAVGPALIAAGAHWVEPETMSACVIDGNLITAATYIGHPGFIQLFVKALGGTITGSDKRI 198

Query: 181 LFLCG 185
           LFLCG
Sbjct: 199 LFLCG 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469102|ref|XP_004152260.1| PREDICTED: uncharacterized protein LOC101208672 [Cucumis sativus] gi|449484302|ref|XP_004156844.1| PREDICTED: uncharacterized LOC101208672 [Cucumis sativus]

 Score =  315 bits (806), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 146/185 (78%), Positives = 167/185 (90%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQAL+A+GVSVDA CPGKK+GD+C TA+H+  GHQTYSE+RGHNFALNATFDEID  
Sbjct: 23  MVPFQALMAYGVSVDAVCPGKKAGDICRTAIHELLGHQTYSESRGHNFALNATFDEIDFD 82

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           KYDGLVIPGGRAPEYLA+N SV  LVRKFS SGK IAS+CHGQLILAAA +V+GRKCTAY
Sbjct: 83  KYDGLVIPGGRAPEYLAINSSVQSLVRKFSESGKPIASVCHGQLILAAAGLVRGRKCTAY 142

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
            PV PVL AAGASWIEPE++AACV+DGN+IT ATYE HP++I+LF+KALGG ++GSDKRI
Sbjct: 143 SPVGPVLAAAGASWIEPESLAACVIDGNLITAATYESHPQYIQLFVKALGGNVSGSDKRI 202

Query: 181 LFLCG 185
           LFLCG
Sbjct: 203 LFLCG 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570459|ref|XP_002526188.1| protease C56, putative [Ricinus communis] gi|223534492|gb|EEF36192.1| protease C56, putative [Ricinus communis]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/200 (73%), Positives = 169/200 (84%), Gaps = 7/200 (3%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQALLAFGV VDA CPGKK+G+ C TA+H+ + HQT+ E+RGHNF LNATFDEID  
Sbjct: 19  MVPFQALLAFGVKVDAVCPGKKAGEFCRTAIHELSTHQTFDESRGHNFTLNATFDEIDFG 78

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           KYDGLVIPGGRAPEYLAMN+SV+D VRKFS++GK IASICHGQLILAAA +VKGR+CTA 
Sbjct: 79  KYDGLVIPGGRAPEYLAMNESVLDCVRKFSDAGKPIASICHGQLILAAAGLVKGRRCTAA 138

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
           P  +PVLIAAGA W+EP+  AACV DGN+ITGATY GHPEFI+LF+KALGG +TGSDKRI
Sbjct: 139 PHGRPVLIAAGADWVEPQNFAACVADGNLITGATYFGHPEFIQLFVKALGGIVTGSDKRI 198

Query: 181 LFLCG-------VSFCFQNL 193
           LFLCG       V+  FQ+L
Sbjct: 199 LFLCGDYMEDYEVTVPFQSL 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357166678|ref|XP_003580796.1| PREDICTED: uncharacterized protein LOC100841497 [Brachypodium distachyon]

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 165/185 (89%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQAL A+GV+VDAACPGKK+GD C TAVHQ  GHQTY+E+RGHNF+LNA+FDEI+  
Sbjct: 20  MVPFQALQAYGVAVDAACPGKKAGDSCRTAVHQPIGHQTYAESRGHNFSLNASFDEINVA 79

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           +YDGLVIPGGRAPEYLAM++ V+DLVRKFS++ K IAS+CHGQLILAAA VV+GR CTAY
Sbjct: 80  EYDGLVIPGGRAPEYLAMDEKVLDLVRKFSDAKKPIASVCHGQLILAAAGVVQGRSCTAY 139

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
           P VKPVLIAAGA+W+E +TMA C VDGN++T A Y+GHPEFI LF+KALGG++ GS+KRI
Sbjct: 140 PAVKPVLIAAGANWVEADTMAKCAVDGNLVTAAAYDGHPEFISLFVKALGGSVAGSNKRI 199

Query: 181 LFLCG 185
           LFLCG
Sbjct: 200 LFLCG 204

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226498180|ref|NP_001146927.1| YLS5 [Zea mays] gi|194688460|gb|ACF78314.1| unknown [Zea mays] gi|195605312|gb|ACG24486.1| YLS5 [Zea mays] gi|414584851|tpg|DAA35422.1| TPA: YLS5 [Zea mays]

 Score =  299 bits (765), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 159/185 (85%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQAL A+GVSVDA CP KK+GD+C TAVHQ TGHQTYSET+GHNF LNA+FDEI  +
Sbjct: 20  MVPFQALQAYGVSVDAVCPSKKAGDICRTAVHQLTGHQTYSETKGHNFTLNASFDEITAS 79

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           +YDGLVIPGGRAPEYLAM++ V+DLVR FS + K IAS+CHGQLILAAA VV+ R CTA+
Sbjct: 80  EYDGLVIPGGRAPEYLAMDEKVLDLVRMFSGAKKPIASVCHGQLILAAARVVENRTCTAF 139

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
           P VKPVL+AAGA W EP+TMA C VDGN+IT ATY  HPEFI LF+KALGG++ GSDKRI
Sbjct: 140 PAVKPVLVAAGAKWEEPDTMAKCTVDGNLITAATYNSHPEFISLFVKALGGSVAGSDKRI 199

Query: 181 LFLCG 185
           LFLCG
Sbjct: 200 LFLCG 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194699960|gb|ACF84064.1| unknown [Zea mays] gi|414584852|tpg|DAA35423.1| TPA: hypothetical protein ZEAMMB73_725295 [Zea mays]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 159/185 (85%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQAL A+GVSVDA CP KK+GD+C TAVHQ TGHQTYSET+GHNF LNA+FDEI  +
Sbjct: 1   MVPFQALQAYGVSVDAVCPSKKAGDICRTAVHQLTGHQTYSETKGHNFTLNASFDEITAS 60

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           +YDGLVIPGGRAPEYLAM++ V+DLVR FS + K IAS+CHGQLILAAA VV+ R CTA+
Sbjct: 61  EYDGLVIPGGRAPEYLAMDEKVLDLVRMFSGAKKPIASVCHGQLILAAARVVENRTCTAF 120

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
           P VKPVL+AAGA W EP+TMA C VDGN+IT ATY  HPEFI LF+KALGG++ GSDKRI
Sbjct: 121 PAVKPVLVAAGAKWEEPDTMAKCTVDGNLITAATYNSHPEFISLFVKALGGSVAGSDKRI 180

Query: 181 LFLCG 185
           LFLCG
Sbjct: 181 LFLCG 185

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2075532	388	DJ1D [Arabidopsis thaliana (ta	0.948	0.476	0.745	4e-74
DICTYBASE|DDB_G0276405	194	pfp1 "DJ-1/ThiJ/PfpI family pr	0.866	0.871	0.450	1e-36
UNIPROTKB|Q8EH52	186	SO_1378 "Peptidase family 56"	0.861	0.903	0.473	1e-36
TIGR_CMR|SO_1378	186	SO_1378 "ThiJ/PfpI family prot	0.861	0.903	0.473	1e-36
TAIR|locus:2064955	398	YLS5 [Arabidopsis thaliana (ta	0.866	0.424	0.416	4.2e-31
UNIPROTKB|P45470	172	yhbO "protein involved in stre	0.723	0.819	0.354	1.1e-18
TIGR_CMR|GSU_1159	167	GSU_1159 "intracellular protea	0.774	0.904	0.315	1.8e-14
UNIPROTKB|Q81UM2	171	BAS0802 "ThiJ/pfpI family prot	0.707	0.807	0.255	3.9e-12
TIGR_CMR|BA_0842	171	BA_0842 "thiJ/pfpI family prot	0.707	0.807	0.255	3.9e-12
UNIPROTKB|Q3ZA81	180	DET0118 "DJ-1 family protein"	0.574	0.622	0.305	4.1e-10

TAIR|locus:2075532 DJ1D [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 138/185 (74%), Positives = 157/185 (84%)

Query:     1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
             MVPFQAL AFG++V   CPGKK+GD CPTAVH   GHQTY E+RGHNF LNATFDE+D +
Sbjct:    21 MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLS 80

Query:    61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
             KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK IASICHGQLILAAAD V GRKCTAY
Sbjct:    81 KYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAY 140

Query:   121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
               V P L+AAGA W+EP T   CVVDG++IT ATYEGHPEFI+LF+KALGG ITG++KRI
Sbjct:   141 ATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRI 200

Query:   181 LFLCG 185
             LFLCG
Sbjct:   201 LFLCG 205

GO:0005737 "cytoplasm" evidence=ISM

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

DICTYBASE|DDB_G0276405 pfp1 "DJ-1/ThiJ/PfpI family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 77/171 (45%), Positives = 110/171 (64%)

Query:     5 QALLAFGVSVDAACPGKKSGDVCPTAVHQST-GHQTYSETRGHNFALNATFDEIDPTKYD 63
             Q L   G +V    PGKKSGD   TA+H    G QTY+E +GH   LN  FD++D   Y+
Sbjct:    23 QMLELVGYNVHLVSPGKKSGDFIVTAIHDFLPGEQTYTELKGHRIQLNFDFDKVDTATYN 82

Query:    64 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPV 123
             GL +PGGR  E+L ++D VI++V+ F+ + K IA++CHG  +L AA++V G KCTAYP  
Sbjct:    83 GLFLPGGRCSEFLRLDDRVIEIVKDFNTNKKPIAAVCHGAQVLTAANIVSGIKCTAYPAC 142

Query:   124 KPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT 174
             +P +  AG  + +   +   VVDG+I++G  +  HP+ I+LF+K LG TIT
Sbjct:   143 RPEVQQAGGIY-QDIAVDDAVVDGHIVSGKAWPCHPKLIQLFIKLLGTTIT 192

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8EH52 SO_1378 "Peptidase family 56" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 80/169 (47%), Positives = 104/169 (61%)

Query:     1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
             MVPFQAL   G SV   CP K +G    TA+H   G QTY+E  GH FALN  F   + +
Sbjct:    18 MVPFQALQMVGHSVTVVCPDKVAGQTIKTAIHDFEGDQTYTEKPGHLFALNGNFAGANAS 77

Query:    61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
              +D L++PGGRAPEYL +N +VI LV  FS   K IA+ICHG  +L AADVV+G+K +AY
Sbjct:    78 DFDALLLPGGRAPEYLRLNPAVIALVADFSAQDKPIAAICHGAQLLTAADVVRGKKVSAY 137

Query:   121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 169
             P   P +  AGA + + E  AA + DG ++T   +  HP ++  F K L
Sbjct:   138 PACAPEVKQAGAEYCDIEVTAA-ITDGKLVTAPAWPAHPAWLAQFNKLL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1378 SO_1378 "ThiJ/PfpI family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 80/169 (47%), Positives = 104/169 (61%)

Query:     1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
             MVPFQAL   G SV   CP K +G    TA+H   G QTY+E  GH FALN  F   + +
Sbjct:    18 MVPFQALQMVGHSVTVVCPDKVAGQTIKTAIHDFEGDQTYTEKPGHLFALNGNFAGANAS 77

Query:    61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
              +D L++PGGRAPEYL +N +VI LV  FS   K IA+ICHG  +L AADVV+G+K +AY
Sbjct:    78 DFDALLLPGGRAPEYLRLNPAVIALVADFSAQDKPIAAICHGAQLLTAADVVRGKKVSAY 137

Query:   121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 169
             P   P +  AGA + + E  AA + DG ++T   +  HP ++  F K L
Sbjct:   138 PACAPEVKQAGAEYCDIEVTAA-ITDGKLVTAPAWPAHPAWLAQFNKLL 185

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2064955 YLS5 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 72/173 (41%), Positives = 104/173 (60%)

Query:     2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQ-STGHQTYSETRGHNFALNATFDEIDPT 60
             VPF+AL A G  VDA  P KK G+VC TAV+    G Q  +E RGHNF + A++D+I   
Sbjct:   227 VPFRALQALGCKVDAVTPNKKKGEVCATAVYDLEDGRQIPAEKRGHNFFVTASWDDICVD 286

Query:    61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
              YD +V+PGGR+PE L MN+  + LV+ F+   K  A+I  G+L+LAA  V+KG++C + 
Sbjct:   287 DYDCVVVPGGRSPELLVMNEKAVALVKSFAEKDKVFAAIGQGKLLLAATGVLKGKRCASG 346

Query:   121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI 173
               +K ++  AG   +  +    CV DG ++T A+    P F+     ALG T+
Sbjct:   347 KGMKVMVKVAGGEAVMEK---GCVTDGKVVTAASATDLPAFLFDLSTALGLTV 396

GO:0005737 "cytoplasm" evidence=ISM

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

UNIPROTKB|P45470 yhbO "protein involved in stress response" [Escherichia coli K-12 (taxid:83333)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 55/155 (35%), Positives = 90/155 (58%)

Query:    21 KKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN 79
             +K+G    T + +  G +T    +G  +  ++ + DE+ P ++D L++PGG +P+YL  +
Sbjct:    26 RKAGHEVIT-IEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGD 83

Query:    80 DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA---AGASWIE 136
             +  +   R F NSGK + +ICHG  +L +ADV++GRK TA   VKP++I    AGA + +
Sbjct:    84 NRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTA---VKPIIIDVKNAGAEFYD 140

Query:   137 PETMAACVVDGN-IITGATYEGHPEFIRLFLKALG 170
              E     VVD + ++T  T +  P F R  L+ LG
Sbjct:   141 QEV----VVDKDQLVTSRTPDDLPAFNREALRLLG 171

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009268 "response to pH" evidence=IMP

GO:0009411 "response to UV" evidence=IMP

TIGR_CMR|GSU_1159 GSU_1159 "intracellular protease, PfpI family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 54/171 (31%), Positives = 83/171 (48%)

Query:     1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
             ++P+  LL  G+ V  A P +  G +        TG   Y+ T   + AL     E+   
Sbjct:    17 LIPYYRLLEEGIPVRIAAPAR--GTI--------TGKHGYAVTA--DLALA----EVAAD 60

Query:    61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
              Y  L++PGG+AP  +    + +++ R F    + +A+ICHG   L +A ++ GR+ T Y
Sbjct:    61 DYTILILPGGKAPAAVRREPAALEICRSFFAHVRPVAAICHGPQTLVSAGLLSGRRATCY 120

Query:   121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGG 171
               V   L  AGA + + E     VVDGN+IT       P F+R  +K L G
Sbjct:   121 RSVADELRGAGALYEDSEV----VVDGNLITSREPADLPAFMREIMKKLKG 167

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

UNIPROTKB|Q81UM2 BAS0802 "ThiJ/pfpI family protein" [Bacillus anthracis (taxid:1392)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/141 (25%), Positives = 66/141 (46%)

Query:    29 TAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRK 88
             T +    G   + +       ++   D++ P  +D L IPGG +P+ L  ++  +   + 
Sbjct:    33 TTIEAEKGKTVHGKQGKSEVVIDTGIDDVSPENFDALFIPGGFSPDILRADERFVRFSKA 92

Query:    89 FSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN 148
             F ++ K + +ICHG  +L  A  ++GR  T Y  ++  L  AG ++ + E +   V    
Sbjct:    93 FMDAEKPVFAICHGPQLLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVV---VCQNQ 149

Query:   149 IITGATYEGHPEFIRLFLKAL 169
             ++T    E  P FI   L+ L
Sbjct:   150 LVTSRQPEDIPAFIEESLRIL 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0842 BA_0842 "thiJ/pfpI family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/141 (25%), Positives = 66/141 (46%)

Query:    29 TAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRK 88
             T +    G   + +       ++   D++ P  +D L IPGG +P+ L  ++  +   + 
Sbjct:    33 TTIEAEKGKTVHGKQGKSEVVIDTGIDDVSPENFDALFIPGGFSPDILRADERFVRFSKA 92

Query:    89 FSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN 148
             F ++ K + +ICHG  +L  A  ++GR  T Y  ++  L  AG ++ + E +   V    
Sbjct:    93 FMDAEKPVFAICHGPQLLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVV---VCQNQ 149

Query:   149 IITGATYEGHPEFIRLFLKAL 169
             ++T    E  P FI   L+ L
Sbjct:   150 LVTSRQPEDIPAFIEESLRIL 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3ZA81 DET0118 "DJ-1 family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 37/121 (30%), Positives = 64/121 (52%)

Query:    43 TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASIC 100
             +RG     +   DE+  + Y+ LV+PGG  P ++ M  +  V++L+R     GK +A+IC
Sbjct:    44 SRGIRIMPDLGIDELKSSDYEVLVLPGGN-PGFINMGKDQRVLELIRSAHAEGKYLAAIC 102

Query:   101 HGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE 160
              G  +L+ A V+ G++   YP VK +L    A  +  +      V+G +ITG + +   +
Sbjct:   103 AGPAVLSRAGVINGKEVAIYPGVKHLLKGCTACDLRVK------VEGKLITGRSPQAAMD 156

Query:   161 F 161
             F
Sbjct:   157 F 157

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8R4	DJ1D_ARATH	No assigned EC number	0.7459	0.9487	0.4768	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00440207 SubName- Full=Putative uncharacterized protein; (387 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	1e-85
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	2e-48
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	1e-41
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	9e-35
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	1e-33
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	2e-20
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	1e-15
cd03141	221	cd03141, GATase1_Hsp31_like, Type 1 glutamine amid	2e-15
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	3e-14
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	8e-11
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	1e-09
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	4e-08
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	8e-08
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	3e-06
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	3e-06
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	8e-06
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	9e-06
cd03147	231	cd03147, GATase1_Ydr533c_like, Type 1 glutamine am	9e-06
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	5e-05
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	0.001
TIGR01737	227	TIGR01737, FGAM_synth_I, phosphoribosylformylglyci	0.002
TIGR01230	275	TIGR01230, agmatinase, agmatinase	0.003
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	0.004
COG0505	368	COG0505, CarA, Carbamoylphosphate synthase small s	0.004

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score =  250 bits (640), Expect = 1e-85
 Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 4/169 (2%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQAL   G  VD   PGKK GD   TA+H   G QTY+E  GH FA+ A FDE+DP 
Sbjct: 16  MVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPD 75

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
            YD LVIPGGRAPEYL +++ V+ +VR F+ + K +A+ICHG  ILAAA V+KGR+CTAY
Sbjct: 76  DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAY 135

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 169
           P  KP +  AG + ++       VVDGN++T   +  HP F+R FLK L
Sbjct: 136 PACKPEVELAGGTVVDD----GVVVDGNLVTAQAWPDHPAFLREFLKLL 180

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score =  155 bits (393), Expect = 2e-48
 Identities = 64/170 (37%), Positives = 92/170 (54%), Gaps = 19/170 (11%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           + P   L   G  VD                       T     G++  ++AT DE++P 
Sbjct: 16  LYPLDRLREAGHEVDTVSKEA----------------GTTVGKHGYSVTVDATIDEVNPE 59

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           +YD LVIPGGRAPEYL +N+  + LVR+F   GK +A+ICHG  +L +A V++G+K T+Y
Sbjct: 60  EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSY 119

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG 170
           P +   +  AGA +++ E     VVDGN++T    +  P F R FLK LG
Sbjct: 120 PAIIDDVKNAGAEYVDIE---VVVVDGNLVTSRVPDDLPAFNREFLKLLG 166

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score =  137 bits (348), Expect = 1e-41
 Identities = 59/168 (35%), Positives = 82/168 (48%), Gaps = 20/168 (11%)

Query: 2   VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHN-FALNATFDEIDPT 60
            P   L   G  V  A P                         G++   ++ T  ++D  
Sbjct: 17  YPLYRLREAGAEVVVAGPEAG---------------GEIQGKHGYDTVTVDLTIADVDAD 61

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
            YD LVIPGG  P+ L  +   +  VR F+ +GK +A+ICHG  +L +A VV+GRK T+Y
Sbjct: 62  DYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSY 121

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKA 168
           P +K  LI AGA+W++       VVDGN+IT    +  P F R  LKA
Sbjct: 122 PSIKDDLINAGANWVD----EEVVVDGNLITSRNPDDLPAFNRAILKA 165

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  119 bits (300), Expect = 9e-35
 Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 6/132 (4%)

Query: 41  SETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASI 99
            +        + T D+++   YD LVIPGG A  E L  ++ ++  V++F  SGK IA+I
Sbjct: 15  GKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKFVKEFYESGKPIAAI 74

Query: 100 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGH 158
           CHG ++LAAA ++KGR+ T++P VK +L  AGA +++       VVDGN ++T A     
Sbjct: 75  CHGPVVLAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQ----PVVVDGNKLVTSAGPGSA 130

Query: 159 PEFIRLFLKALG 170
            EF    L+ALG
Sbjct: 131 EEFALELLEALG 142

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score =  118 bits (296), Expect = 1e-33
 Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 23/183 (12%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNF-ALNATFDEIDP 59
           +VP+  L   G  VD A P  K               ++ +  RG    A +  FD+ D 
Sbjct: 19  IVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGGLVVADDKAFDDADA 64

Query: 60  TKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKC 117
             YD LVIPGG   PEYL  +  ++  VR F  +GK +A+ICHG  +LAAA  ++KGRK 
Sbjct: 65  ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKA 124

Query: 118 TAYPPVKPVLI----AAGASWIEPETMAA-CVVDGN-IITGATYEGHPEFIRLFLKALGG 171
           TA+P ++  +      AGA++++        VVDGN ++TG      P F    LKALGG
Sbjct: 125 TAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLKALGG 184

Query: 172 TIT 174
              
Sbjct: 185 AEK 187

Length = 188

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score = 83.0 bits (206), Expect = 2e-20
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 51  NATFDEIDPTKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109
           + T  +++   YD +VIPGG    + LA N+ +I L+++F+  GK IA+IC    +LA A
Sbjct: 50  DKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109

Query: 110 DVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
            ++KG+K T YP  +  L  A             VVDGNIIT 
Sbjct: 110 GLLKGKKATCYPGFEDKLGGANYVD------EPVVVDGNIITS 146

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 71.0 bits (175), Expect = 1e-15
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 43  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 102
             G     + +F   DP   D L++PGG     L  + +++D +R+ +   K + S+C G
Sbjct: 46  RSGLTVLPDTSFA--DPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTG 103

Query: 103 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
            L+LAAA ++ GR+ T +      L   GA        A  VVDGNI T  
Sbjct: 104 ALLLAAAGLLDGRRATTHWAAIDWLKEFGA---IVVVDARWVVDGNIWTSG 151

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|153235 cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 41/184 (22%)

Query: 3   PFQALLAFGVSVDAACP-GKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF------- 54
           P+      G  VD A P G K          +S       +     F  +  F       
Sbjct: 28  PYDVFTEAGYEVDFASPKGGK-----VPLDPRS--LDAEDDDDASVFDNDEEFKKKLANT 80

Query: 55  ---DEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 110
               ++DP+ YD + IPGG  P + L  N  + DL+R+F  +GK +A++CHG   L    
Sbjct: 81  KKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK 140

Query: 111 ------VVKGRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CVVDGN 148
                 +V G+  T +                 ++  L   GA++++ E  A   VVDG 
Sbjct: 141 LSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDGR 200

Query: 149 IITG 152
           +ITG
Sbjct: 201 LITG 204

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers. Length = 221

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 52  ATFDEIDPTKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 110
           A+ +++D  K+D +V+PGG    E L  +  ++++++   + GK +A+IC    +L A  
Sbjct: 54  ASLEDVDLEKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHG 113

Query: 111 VVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
           V+ G+K T YP  K  L     ++   +T+   VVDGN+IT  
Sbjct: 114 VLLGKKATCYPGFKEKL--LNGNYSVNKTV---VVDGNLITSR 151

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 57.6 bits (140), Expect = 8e-11
 Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 24/128 (18%)

Query: 54  FDEIDPTKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 110
            D++ P  YD L++PGG +   PE       +  LVR+    GK +A+IC   L LA A 
Sbjct: 53  LDDLPPEDYDLLILPGGDSWDNPE----APDLAGLVRQALKQGKPVAAICGATLALARAG 108

Query: 111 VVKGRKCT--------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 162
           ++  RK T        A+ P           + EP+     V DGN+IT A      EF 
Sbjct: 109 LLNNRKHTSNSLDFLKAHAP----YYGGAEYYDEPQA----VSDGNLIT-ANGTAPVEFA 159

Query: 163 RLFLKALG 170
              L+AL 
Sbjct: 160 AEILRALD 167

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 43  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 102
           T  +   +       D  + D +++PGG      A + +++  ++    +G+ + ++C G
Sbjct: 42  TSMNGVTITVDAPLADAPEADAVLVPGGPGTRAAAADPALLAQLQLADPAGQLLGAVCSG 101

Query: 103 QLILAAADVVKGRKCTAYPPVKPVLIAAGA--SWIEPETMAACVVDGNIIT 151
            L+LA A ++ GR  T +  +KP L  AG     I+       V DGN+ T
Sbjct: 102 ALLLAEAGLLDGRPATTHWTLKPWLREAGPKVLLID----RPFVADGNLAT 148

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 55  DEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 106
            ++D   YDGL++PGG   P+ LA +++++ L+R+ + +GK I  IC G  +L
Sbjct: 40  SDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 48.0 bits (114), Expect = 8e-08
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 55  DEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 106
            ++D   YDGL++PGG   P+ LA +++++ L+R+ + +GK +  IC G  +L
Sbjct: 40  SDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 26/110 (23%)

Query: 58  DPTKYDGLVIPG-GRAPEYLAMND--SVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 114
           D    D +++PG G  P+ L + D  ++I  +R+   +G T+A+ C G  +LA A ++ G
Sbjct: 66  DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDG 125

Query: 115 RKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
           R+ T            +P V+          ++P+ +   V DGN+IT  
Sbjct: 126 RRATTHWWLAPQFRRRFPKVR----------LDPDRVV--VTDGNLITAG 163

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 23/103 (22%)

Query: 62  YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT--- 118
            D +++PGG   +      +++  +R+ +  G  +AS+C G  +LA A ++ GR+ T   
Sbjct: 65  ADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHW 124

Query: 119 --------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
                    +P V+          ++P+     V DGN+ T A
Sbjct: 125 AYAEDLARRFPAVR----------VDPD--VLYVDDGNVWTSA 155

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 24/117 (20%)

Query: 48  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
            ++            D L + GG  PE      +++  +R+ +  G  +  +C G  +LA
Sbjct: 63  LSIAPDGGLEAAPPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLA 122

Query: 108 AADVVKGRKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
            A ++ GR+ T            +P V+              T    V+DG+ IT A
Sbjct: 123 EAGLLDGRRATTHWEHAEDFQERFPDVR-------------VTDRLFVIDGDRITCA 166

Length = 328

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 58  DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC 117
           D    D L + GG      A+  +++  +R+ +  G  +  I  G  +LA A ++ GR+ 
Sbjct: 61  DAPPLDYLFVVGGLGARR-AVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRA 119

Query: 118 TA 119
           T 
Sbjct: 120 TV 121

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153241 cd03147, GATase1_Ydr533c_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 37/135 (27%)

Query: 52  ATFDEIDPTKYDGLVIPGGRAPEYLAMND-----SVIDLVRKFSNSGKTIASICHGQLIL 106
              DE++P  Y    + GG       + D     ++  + ++   +G  +A++CHG  IL
Sbjct: 85  KKADEVNPDDYGIFFVAGGHG----TLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAIL 140

Query: 107 AAAD-------VVKGRKCTAY-------------------PPVKPVLIAAGASWIEPETM 140
           A          ++KG+  T +                     ++ +   AGA++I P   
Sbjct: 141 ANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESIEDIAERAGANFIRPPGP 200

Query: 141 AA--CVVDGNIITGA 153
                VVDG I+TG+
Sbjct: 201 WDDFTVVDGRIVTGS 215

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. Length = 231

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 51  NATFDEIDPTKYDGLVI---PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
           N   +EI     DG+ +   PG   P  L   D  I  VRK       I  IC G  +LA
Sbjct: 29  NTDAEEILKLDPDGIFLSNGPGD--PALL---DEAIKTVRKLLGKKIPIFGICLGHQLLA 83

Query: 108 AA 109
            A
Sbjct: 84  LA 85

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 51  NATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAA- 108
           +   +EI     DG++I  G  P         I+ +++   +   I  IC G QL+  A 
Sbjct: 30  DTPAEEILELNPDGIIISPG--PGSPGALGGAIEAIKELRENKIPILGICLGHQLLALAF 87

Query: 109 -ADVVKGRK 116
              V+K +K
Sbjct: 88  GGKVIKAKK 96

Length = 186

>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 54  FDEIDPTKYDGLVIPGG-RAPEYL-----AMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
           +++     YDG+V+PGG    +YL     A    ++  VR+F+  G  +  IC+G  IL 
Sbjct: 33  YEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILV 92

Query: 108 AADVVKG 114
            A ++ G
Sbjct: 93  EAGLLPG 99

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 227

>gnl|CDD|233323 TIGR01230, agmatinase, agmatinase

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 10 FGVSVDAACPGKKSGDVCPTAVHQ-STGHQTYSETRGHNFALNATFDEIDPTKYDGLVIP 68
          +G+  DA    +      P A+ + S   + YS     + A+    D  D      L + 
Sbjct: 18 YGIPYDATTSYRPGSRHGPNAIREASWNLEWYSNRLDRDLAMLNVVDAGD------LPLA 71

Query: 69 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 99
           G A E   M + + +   +F   GK   +I
Sbjct: 72 FGDARE---MFEKIQEHAEEFLEEGKFPVAI 99

Members of this family include known and predicted examples of agmatinase (agmatine ureohydrolase). The seed includes members of archaea, for which no definitive agmatinase sequence has yet been made available. However, archaeal sequences are phylogenetically close to the experimentally verified B. subtilis sequence. One species of Halobacterium has been demonstrated in vitro to produce agmatine from arginine, but no putrescine from ornithine, suggesting that arginine decarboxylase and agmatinase, rather than arginase and ornithine decarboxylase, lead from Arg to polyamine biosynthesis. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887. Length = 275

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 29  TAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAMNDSVIDLVR 87
           TA   S G+   + +RG     +A   E+    +D +V+PGG +  E    +  +++ VR
Sbjct: 34  TASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVR 93

Query: 88  KFSNSGKTIASICHG-QLILAAADVVKGRKCTAYPPVK 124
           +F  SG+ +A+IC     +L   D+      T +P +K
Sbjct: 94  QFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLK 131

Length = 196

>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 51  NATFDEIDPTKYDGLVI---PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
           + + +EI     DG+ +   PG   P  L   D  I+ +++   +   I  IC G  +LA
Sbjct: 210 DTSAEEILALNPDGIFLSNGPGD--PAPL---DYAIETIKELLGTKIPIFGICLGHQLLA 264

Query: 108 AA 109
            A
Sbjct: 265 LA 266

Length = 368

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	100.0
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	100.0
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.98
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.97
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.97
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	99.97
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	99.97
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	99.97
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.97
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.97
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.97
PRK04155	287	chaperone protein HchA; Provisional	99.97
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	99.97
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.96
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.96
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	99.96
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.96
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.95
COG4977	328	Transcriptional regulator containing an amidase do	99.95
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.95
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.95
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.93
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.93
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.79
PRK11249	752	katE hydroperoxidase II; Provisional	99.48
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.3
COG3155	217	ElbB Uncharacterized protein involved in an early	99.23
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.11
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.08
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.93
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	98.89
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.79
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.74
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.71
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.63
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.61
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.49
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.42
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.42
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.4
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.34
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.33
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	98.33
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	98.24
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	98.22
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	98.16
PRK07053	234	glutamine amidotransferase; Provisional	98.15
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	98.12
PRK06895	190	putative anthranilate synthase component II; Provi	98.05
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	98.05
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	98.01
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.0
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.98
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	97.94
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.94
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.92
PRK06490	239	glutamine amidotransferase; Provisional	97.91
PRK08250	235	glutamine amidotransferase; Provisional	97.91
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	97.9
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	97.87
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	97.87
PRK08007	187	para-aminobenzoate synthase component II; Provisio	97.86
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	97.83
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	97.78
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	97.78
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	97.77
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.76
PRK06774	191	para-aminobenzoate synthase component II; Provisio	97.76
PRK07765	214	para-aminobenzoate synthase component II; Provisio	97.74
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	97.73
PRK00784	488	cobyric acid synthase; Provisional	97.73
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	97.72
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	97.68
PRK05670	189	anthranilate synthase component II; Provisional	97.66
PHA03366	1304	FGAM-synthase; Provisional	97.65
PRK05665	240	amidotransferase; Provisional	97.64
PRK09065	237	glutamine amidotransferase; Provisional	97.61
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.59
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	97.59
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	97.58
PRK05637	208	anthranilate synthase component II; Provisional	97.57
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	97.56
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	97.56
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	97.52
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	97.52
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	97.5
CHL00101	190	trpG anthranilate synthase component 2	97.49
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	97.49
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	97.49
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	97.44
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	97.44
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	97.43
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	97.43
PRK08857	193	para-aminobenzoate synthase component II; Provisio	97.43
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	97.4
PRK00758	184	GMP synthase subunit A; Validated	97.38
PLN02335	222	anthranilate synthase	97.32
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	97.31
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.18
PRK07567	242	glutamine amidotransferase; Provisional	97.15
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	97.12
PRK13566	720	anthranilate synthase; Provisional	97.12
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	97.07
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	97.03
PLN02347	536	GMP synthetase	97.02
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	97.01
TIGR00313	475	cobQ cobyric acid synthase CobQ.	96.98
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	96.84
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	96.75
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	96.7
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	96.69
PRK06186	229	hypothetical protein; Validated	96.67
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	96.55
PRK05380	533	pyrG CTP synthetase; Validated	96.51
PRK00074	511	guaA GMP synthase; Reviewed	96.26
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	96.22
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	96.18
COG2071	243	Predicted glutamine amidotransferases [General fun	96.13
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	96.13
PLN02327	557	CTP synthase	95.91
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	95.89
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	95.54
KOG2764	247	consensus Putative transcriptional regulator DJ-1	95.18
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	95.17
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	95.16
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	95.1
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	94.74
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	94.72
PRK05368	302	homoserine O-succinyltransferase; Provisional	94.68
PLN02889	918	oxo-acid-lyase/anthranilate synthase	94.64
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	94.6
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	94.38
COG3442	250	Predicted glutamine amidotransferase [General func	94.37
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	94.09
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	93.58
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	93.21
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	92.5
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	91.97
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	91.49
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	91.33
COG4635	175	HemG Flavodoxin [Energy production and conversion	91.06
cd03143	154	A4_beta-galactosidase_middle_domain A4 beta-galact	90.82
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	89.77
PF08532	207	Glyco_hydro_42M: Beta-galactosidase trimerisation	89.6
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	87.23

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=2e-32  Score=211.30  Aligned_cols=164  Identities=54%  Similarity=0.969  Sum_probs=137.8

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS   81 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~   81 (195)
                      .|+++|+++|++|+++|+.+++.++.........+.+.+.+..|..+.++.+++++...+||+|+||||+++..+..++.
T Consensus        17 ~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liv~GG~~~~~~~~~~~   96 (180)
T cd03169          17 VPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDALVIPGGRAPEYLRLDEK   96 (180)
T ss_pred             HHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEEEEcCCCChhhhccCHH
Confidence            69999999999999999998754332221111122234556679999999999987767899999999987665556789


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHH
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF  161 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~  161 (195)
                      +.+||+++++++|+|++||+|+++|+++|||+|+++|+||...+.+++.+..+.+.    .+++|||+|||+|+.++.+|
T Consensus        97 ~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~----~~v~D~~iiT~~~~~~~~~f  172 (180)
T cd03169          97 VLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDD----GVVVDGNLVTAQAWPDHPAF  172 (180)
T ss_pred             HHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeec----cEEEECCEEEecCCchHHHH
Confidence            99999999999999999999999999999999999999999999999876666554    38999999999999999999


Q ss_pred             HHHHHHHH
Q 029299          162 IRLFLKAL  169 (195)
Q Consensus       162 ~l~li~~l  169 (195)
                      +..+++.|
T Consensus       173 ~~~~~~~l  180 (180)
T cd03169         173 LREFLKLL  180 (180)
T ss_pred             HHHHHHhC
Confidence            99999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=100.00  E-value=5e-32  Score=206.23  Aligned_cols=150  Identities=43%  Similarity=0.753  Sum_probs=135.6

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS   81 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~   81 (195)
                      .|++.|+++|++++++|+.++                +++++.|.++.++.++++++..+||+||||||.++..+..++.
T Consensus        17 ~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~   80 (166)
T TIGR01382        17 YPLDRLREAGHEVDTVSKEAG----------------TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNK   80 (166)
T ss_pred             HHHHHHHHCCCEEEEEecCCC----------------ceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHH
Confidence            589999999999999998764                4677889999999999887666899999999987665667889


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHH
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF  161 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~  161 (195)
                      +.+||+++++++++++++|+|+++||++|||+|+++|+||...+.+++.+..+.+.+   .+++|||+|||+|+.++.+|
T Consensus        81 l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---~~v~dg~iiT~~~~~~~~~f  157 (166)
T TIGR01382        81 AVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVVVDGNLVTSRVPDDLPAF  157 (166)
T ss_pred             HHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCC---CEEEECCEEEeCCcccHHHH
Confidence            999999999999999999999999999999999999999999999998888887743   49999999999999999999


Q ss_pred             HHHHHHHHc
Q 029299          162 IRLFLKALG  170 (195)
Q Consensus       162 ~l~li~~l~  170 (195)
                      +..+++.++
T Consensus       158 a~~~~~~l~  166 (166)
T TIGR01382       158 NREFLKLLG  166 (166)
T ss_pred             HHHHHHHhC
Confidence            999999874

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.98  E-value=1.6e-31  Score=202.48  Aligned_cols=147  Identities=35%  Similarity=0.588  Sum_probs=128.8

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC-ChhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR-APEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~l~~~~   80 (195)
                      .|++.|+.+||+++++|+++++               .+.++.|..+.++.++++.+..+||+||||||. ++..+..++
T Consensus        16 ~~~~~~~~a~~~v~~vs~~~~~---------------~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~   80 (163)
T cd03135          16 TPVDVLRRAGIEVTTASLEKKL---------------AVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNE   80 (163)
T ss_pred             HHHHHHHHCCCEEEEEEcCCCc---------------eEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCH
Confidence            5899999999999999998764               233578999999999998777899999999998 565566799


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHH
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE  160 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~  160 (195)
                      .+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+  .+..+.+.    .+++|||++||+|+.++++
T Consensus        81 ~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~----~~v~dg~l~T~~g~~s~~d  154 (163)
T cd03135          81 KLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDE----PVVVDGNIITSRGPGTAFE  154 (163)
T ss_pred             HHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecC----CEEEECCEEEcCCcccHHH
Confidence            99999999999999999999999999999999999999998876655  34555554    3999999999999999999


Q ss_pred             HHHHHHHHH
Q 029299          161 FIRLFLKAL  169 (195)
Q Consensus       161 ~~l~li~~l  169 (195)
                      |++++|+++
T Consensus       155 ~al~li~~l  163 (163)
T cd03135         155 FALKIVEAL  163 (163)
T ss_pred             HHHHHHHhC
Confidence            999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.97  E-value=5.1e-31  Score=200.49  Aligned_cols=146  Identities=40%  Similarity=0.717  Sum_probs=132.1

Q ss_pred             chhHHHHhCCCeEEEeCCC-CCCCCCCCccccCCCCccccccccCc-ceeeccCCCCCCCCCcCEEEEcCCCChhhhccC
Q 029299            2 VPFQALLAFGVSVDAACPG-KKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN   79 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~-~~~~~~~~~~~~~~~~~~~v~~~~g~-~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~   79 (195)
                      .|++.|+++|++++++|++ ++                +++++.|. .+.++..+++....+||+|+||||+++..+..+
T Consensus        17 ~~~~~l~~a~~~v~~vs~~~~~----------------~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~   80 (165)
T cd03134          17 YPLYRLREAGAEVVVAGPEAGG----------------EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRD   80 (165)
T ss_pred             HHHHHHHHCCCEEEEEccCCCc----------------ccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccC
Confidence            4788999999999999998 54                47778899 999999998876668999999999876656678


Q ss_pred             hHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHH
Q 029299           80 DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHP  159 (195)
Q Consensus        80 ~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~  159 (195)
                      +.+.+||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+.+..    +++|||+|||+|+.++.
T Consensus        81 ~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~----~v~dg~iiT~~~~~~~~  156 (165)
T cd03134          81 PDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----VVVDGNLITSRNPDDLP  156 (165)
T ss_pred             HHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----EEEECCEEEecCcchHH
Confidence            99999999999999999999999999999999999999999999999998877777654    89999999999999999


Q ss_pred             HHHHHHHH
Q 029299          160 EFIRLFLK  167 (195)
Q Consensus       160 ~~~l~li~  167 (195)
                      +|++.+++
T Consensus       157 ~f~~~~~~  164 (165)
T cd03134         157 AFNRAILK  164 (165)
T ss_pred             HHHHHHHh
Confidence            99999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.97  E-value=3e-31  Score=211.91  Aligned_cols=169  Identities=23%  Similarity=0.351  Sum_probs=134.4

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCC-CCCCCccccCCCC-cccc----ccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-
Q 029299            1 MVPFQALLAFGVSVDAACPGKKS-GDVCPTAVHQSTG-HQTY----SETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-   73 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~-~~~~~~~~~~~~~-~~~v----~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-   73 (195)
                      ++||++|+++|++|+++||.+++ .++.+........ ...+    ..+.+.++..+.++++++..+||+||||||+++ 
T Consensus        28 ~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~~  107 (231)
T cd03147          28 LHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGHGTL  107 (231)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCCchh
Confidence            47999999999999999998752 3322211110000 0112    234566788899999999899999999999875 


Q ss_pred             hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC-------CCCCCceEecCCCc-------------------hHHH
Q 029299           74 EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPPV-------------------KPVL  127 (195)
Q Consensus        74 ~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a-------GlL~g~~~T~~~~~-------------------~~~l  127 (195)
                      .++..++.+.++|+++++++|+|++||||+.+|+.+       ++++||++|+|+..                   .+.+
T Consensus       108 ~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~~~~~e~~l  187 (231)
T cd03147         108 FDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESIEDIA  187 (231)
T ss_pred             hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccCCccHHHHH
Confidence            458899999999999999999999999999999987       99999999999864                   3456


Q ss_pred             HHCCCeeecCC-C-cceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 029299          128 IAAGASWIEPE-T-MAACVVDGNIITGATYEGHPEFIRLFLKAL  169 (195)
Q Consensus       128 ~~~g~~~~~~~-~-~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l  169 (195)
                      ++.|+.|...+ . ...+++|||+||++++.++.+|++.+++.|
T Consensus       188 ~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         188 ERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             HHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence            66788888643 1 235899999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.97  E-value=4.4e-31  Score=203.83  Aligned_cols=160  Identities=24%  Similarity=0.330  Sum_probs=138.6

Q ss_pred             chhHHHHhCC-----CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhh
Q 029299            2 VPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL   76 (195)
Q Consensus         2 ~p~~~l~~~G-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l   76 (195)
                      .|+++|++++     ++|+++|++++                ++++++|..+.++..+++.  .+||+||||||.++..+
T Consensus        16 ~~~d~~~~a~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~~~~~~   77 (183)
T cd03139          16 GPYEVFGRAPRLAAPFEVFLVSETGG----------------PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGGGTRAL   77 (183)
T ss_pred             eHHHHHHHhhccCCCEEEEEEECCCC----------------ceEeCCCCEEcCCcccccC--CCCCEEEECCCcchhhh
Confidence            5789999998     99999999875                4788999999999998864  58999999999877656


Q ss_pred             ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCC
Q 029299           77 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE  156 (195)
Q Consensus        77 ~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~  156 (195)
                      ..++.+.+||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+...   ..++.||+++||+|+.
T Consensus        78 ~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~---~~~v~dg~i~T~~g~~  154 (183)
T cd03139          78 VNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVD---ARWVVDGNIWTSGGVS  154 (183)
T ss_pred             ccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCC---CEEEecCCEEEcCcHH
Confidence            7899999999999999999999999999999999999999999999999998865444221   3599999999999999


Q ss_pred             CHHHHHHHHHHHHcCcc-ccc-ccceee
Q 029299          157 GHPEFIRLFLKALGGTI-TGS-DKRILF  182 (195)
Q Consensus       157 ~~~~~~l~li~~l~~~~-a~~-~~~~~~  182 (195)
                      ++.+|++++|+++.++. +.+ ++.++|
T Consensus       155 a~~~~~l~ii~~~~g~~~a~~~a~~~~~  182 (183)
T cd03139         155 AGIDMALALVARLFGEELAQAVALLIEY  182 (183)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence            99999999999887775 555 555543

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>TIGR01383 not_thiJ DJ-1 family protein

Probab=99.97  E-value=1.4e-30  Score=200.37  Aligned_cols=153  Identities=29%  Similarity=0.484  Sum_probs=130.9

Q ss_pred             chhHHHHhCCCeEEE--eCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC-hhhhcc
Q 029299            2 VPFQALLAFGVSVDA--ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAM   78 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~--~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~   78 (195)
                      .|++.|+++|+++++  +|++++               ++++++.|.++.++.++++++..+||+||||||.. ...+..
T Consensus        17 ~~~~~l~~a~~~~~~~~~s~~g~---------------~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~   81 (179)
T TIGR01383        17 ITVDVLRRAGIKVTVAIVGLNGK---------------LPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRN   81 (179)
T ss_pred             HHHHHHHHCCCEEEEEEeccCCC---------------cceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhh
Confidence            589999999988886  999764               14778999999999999887667999999999964 444567


Q ss_pred             ChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCH
Q 029299           79 NDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGH  158 (195)
Q Consensus        79 ~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~  158 (195)
                      ++.+.+||+++++++++|+++|+|+++||++|+|+|+++|+||...+.+.+.  .+...   ..+++||+++||+|+.++
T Consensus        82 ~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~--~~~~~---~~~v~dg~i~T~~g~~a~  156 (179)
T TIGR01383        82 SKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNG--NYSVN---EAVVVDGNIITSRGPGTA  156 (179)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCC--ceeCC---CCEEEeCCEEECCChhhH
Confidence            8999999999999999999999999999999999999999999877765442  33222   248999999999999999


Q ss_pred             HHHHHHHHHHHcCccc
Q 029299          159 PEFIRLFLKALGGTIT  174 (195)
Q Consensus       159 ~~~~l~li~~l~~~~a  174 (195)
                      ++|++++|+++.++..
T Consensus       157 ~d~~l~li~~~~g~~~  172 (179)
T TIGR01383       157 IEFALALVELLCGKEK  172 (179)
T ss_pred             HHHHHHHHHHhcCHHH
Confidence            9999999999887753

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.97  E-value=1.2e-30  Score=202.14  Aligned_cols=155  Identities=20%  Similarity=0.316  Sum_probs=134.9

Q ss_pred             chhHHHHhCC-------CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299            2 VPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE   74 (195)
Q Consensus         2 ~p~~~l~~~G-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~   74 (195)
                      .|+++|+.++       +++.++|++++                ++++++|.++.+|..+++  ..+||+||||||.+..
T Consensus        16 ~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~v~~d~~~~~--~~~~D~liipGg~~~~   77 (187)
T cd03137          16 GPAEVFGEANRALGPPAYELRVCSPEGG----------------PVRSSSGLSLVADAGLDA--LAAADTVIVPGGPDVD   77 (187)
T ss_pred             HHHHHHHHHHhhcCCCCeEEEEEeCCCC----------------ceeecCCcEEEcCcCccc--cCCCCEEEECCCcccc
Confidence            4889999987       99999999875                477899999999998874  4689999999998766


Q ss_pred             hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-CCeeecCCCcceEEEcCCeEeCC
Q 029299           75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPETMAACVVDGNIITGA  153 (195)
Q Consensus        75 ~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g~~~~~~~~~~~~v~Dg~iiT~~  153 (195)
                      ....++.+.+||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.++++ +...+..+  ..++.||+++||+
T Consensus        78 ~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~--~~~v~dg~i~Ta~  155 (187)
T cd03137          78 GRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPD--VLYVDDGNVWTSA  155 (187)
T ss_pred             cccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecC--CEEEecCCEEEcc
Confidence            56689999999999999999999999999999999999999999999999999884 54444332  1488999999999


Q ss_pred             CCCCHHHHHHHHHHHHcCcc-ccc
Q 029299          154 TYEGHPEFIRLFLKALGGTI-TGS  176 (195)
Q Consensus       154 g~~~~~~~~l~li~~l~~~~-a~~  176 (195)
                      |+.++++|++++|+++.++. +.+
T Consensus       156 g~~~~~d~~l~li~~~~g~~~a~~  179 (187)
T cd03137         156 GVTAGIDLCLHLVREDLGAAVANR  179 (187)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHH
Confidence            99999999999999877765 444

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.97  E-value=1e-30  Score=207.98  Aligned_cols=169  Identities=28%  Similarity=0.514  Sum_probs=133.9

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccC--CCCcccc--ccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hh
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQ--STGHQTY--SETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EY   75 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~--~~~~~~v--~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~   75 (195)
                      +.||++|+++|++|+++||.+++.....++...  .......  ..+.+.++.++.++++++..+||+|+||||+++ ..
T Consensus        26 ~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ipGG~~~~~~  105 (221)
T cd03141          26 AHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIPGGHGPMFD  105 (221)
T ss_pred             HHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEECCCcccccc
Confidence            369999999999999999988652211111110  0000000  124567889999999998889999999999875 34


Q ss_pred             hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC------CCCCceEecCCCch---------------HHHHHCCCee
Q 029299           76 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPVK---------------PVLIAAGASW  134 (195)
Q Consensus        76 l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG------lL~g~~~T~~~~~~---------------~~l~~~g~~~  134 (195)
                      +..++.+.+||+++++++|+|++||+|+++|+++|      +|+||++|+||...               +.+++.|+.|
T Consensus       106 l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  185 (221)
T cd03141         106 LPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKELGANY  185 (221)
T ss_pred             cccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHHHHHcCCEe
Confidence            67899999999999999999999999999999999      79999999998754               3467778888


Q ss_pred             ecCCC-cceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 029299          135 IEPET-MAACVVDGNIITGATYEGHPEFIRLFLKAL  169 (195)
Q Consensus       135 ~~~~~-~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l  169 (195)
                      .+..+ +..+|+|+|+||++|+.++.+|++++|+.|
T Consensus       186 ~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         186 VKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             ecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence            87431 235999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.97  E-value=4.3e-30  Score=205.44  Aligned_cols=167  Identities=17%  Similarity=0.271  Sum_probs=132.3

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccc---cccCcceeeccCCCCC------CCCCcCEEEEcCCC
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYS---ETRGHNFALNATFDEI------DPTKYDGLVIPGGR   71 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~i~~~~~~~~~------~~~~~D~livpGG~   71 (195)
                      ++||++|+++|++|+++||.|++.....++....  .+.+.   ...+.++..+.+++++      +..+||+||+|||+
T Consensus        29 ~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~--~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG~  106 (232)
T cd03148          29 LLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHE--DEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAAVFIPGGH  106 (232)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCcCccCccccccc--cHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceEEEECCCC
Confidence            3799999999999999999876422222222110  00111   1345567778888876      45799999999998


Q ss_pred             Ch-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCC------CCCceEecCCCchH-------------------
Q 029299           72 AP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV------VKGRKCTAYPPVKP-------------------  125 (195)
Q Consensus        72 ~~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGl------L~g~~~T~~~~~~~-------------------  125 (195)
                      ++ .++..++.+.++++++++++|+|++||||++.|..+++      ++||++|+|+..++                   
T Consensus       107 g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~pf~le  186 (232)
T cd03148         107 GALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPGHLTWLVG  186 (232)
T ss_pred             CChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccCcccccHH
Confidence            86 45889999999999999999999999999999999998      99999999877644                   


Q ss_pred             -HHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 029299          126 -VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL  169 (195)
Q Consensus       126 -~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l  169 (195)
                       .+++.|+.|...+-...+|+||++||++++.|+..++..+++.+
T Consensus       187 ~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~  231 (232)
T cd03148         187 EELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM  231 (232)
T ss_pred             HHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence             45566888887732247999999999999999999999999865

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.97  E-value=9.1e-30  Score=197.45  Aligned_cols=156  Identities=37%  Similarity=0.594  Sum_probs=140.3

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCC-CChhhhccC
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAMN   79 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG-~~~~~l~~~   79 (195)
                      ++|.+.|+|.|.+|++++++++.               ++.++.|.++.+|..+.|.....||++||||| .|+..|.++
T Consensus        22 ivp~dVLrr~Gi~Vt~ag~~~~~---------------~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~   86 (247)
T KOG2764|consen   22 IVPIDVLRRGGIDVTVAGPNKKE---------------GVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSEC   86 (247)
T ss_pred             EEeHHHHHhcCceEEEecCCCCc---------------ccccccceEecccccchhhccccccEEEecCCchhhhhhhhc
Confidence            46899999999999999998763               56778888899999888776689999999999 788889999


Q ss_pred             hHHHHHHHHHHhCCCeEEEecHHHH-HHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCH
Q 029299           80 DSVIDLVRKFSNSGKTIASICHGQL-ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGH  158 (195)
Q Consensus        80 ~~l~~~l~~~~~~~k~i~aic~G~~-lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~  158 (195)
                      +.+.+++++|.+.|++|++||+|+. +|+.-|++.|+++|+|+...+.+.+-+..|++..    ++.|||++|++|+..+
T Consensus        87 ~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~----vv~dG~liTSrGpgT~  162 (247)
T KOG2764|consen   87 EKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR----VVKDGNLITSRGPGTA  162 (247)
T ss_pred             HHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC----eEEeCcEEeccCCCch
Confidence            9999999999999999999999994 5566677779999999999999999888888876    9999999999999999


Q ss_pred             HHHHHHHHHHHcCcccc
Q 029299          159 PEFIRLFLKALGGTITG  175 (195)
Q Consensus       159 ~~~~l~li~~l~~~~a~  175 (195)
                      .+|++.|+|+|.+++..
T Consensus       163 ~eFal~lvEqL~GKeka  179 (247)
T KOG2764|consen  163 FEFALKLVEQLGGKEKA  179 (247)
T ss_pred             HHHHHHHHHHhcCchhh
Confidence            99999999999998743

>PRK04155 chaperone protein HchA; Provisional

Probab=99.97  E-value=5.3e-30  Score=210.09  Aligned_cols=170  Identities=18%  Similarity=0.262  Sum_probs=132.0

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCcccccc---ccCcceeeccCCCCC----C--CCCcCEEEEcCCC
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE---TRGHNFALNATFDEI----D--PTKYDGLVIPGGR   71 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~---~~g~~i~~~~~~~~~----~--~~~~D~livpGG~   71 (195)
                      ++||++|+++|++|+++|+.|++.....|+.+..  .+.++.   ..+.++..+..++++    .  ..+||+||||||+
T Consensus        80 ~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~--d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~  157 (287)
T PRK04155         80 LLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPHE--DEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPGGH  157 (287)
T ss_pred             HHHHHHHHHCCCEEEEEecCCCcccccccccccc--chhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECCCC
Confidence            4799999999999999999886643333332110  011111   223344444444333    3  5799999999999


Q ss_pred             Ch-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC------CCCCceEecCCCc-------------------hH
Q 029299           72 AP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPV-------------------KP  125 (195)
Q Consensus        72 ~~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG------lL~g~~~T~~~~~-------------------~~  125 (195)
                      ++ ..+..++.+.++|+++++++|+|++||||+++|..++      +++||++|+|+..                   .+
T Consensus       158 g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~  237 (287)
T PRK04155        158 GALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTWLFGE  237 (287)
T ss_pred             chHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccchHHH
Confidence            85 5588999999999999999999999999999999999      9999999998865                   45


Q ss_pred             HHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcCc
Q 029299          126 VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT  172 (195)
Q Consensus       126 ~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~~  172 (195)
                      .|++.|+.|++.+....+++|||+||++|+.++.+|++.+++.|..+
T Consensus       238 ~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~  284 (287)
T PRK04155        238 ELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLAA  284 (287)
T ss_pred             HHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHH
Confidence            67778999998632235999999999999999999999999977544

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.97  E-value=6.7e-30  Score=197.87  Aligned_cols=158  Identities=17%  Similarity=0.229  Sum_probs=134.5

Q ss_pred             chhHHHHhCC-------CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299            2 VPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE   74 (195)
Q Consensus         2 ~p~~~l~~~G-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~   74 (195)
                      .|++.|..++       |+|+++|++++                ++++++|.++.++..+.+.  .+||+||||||.+..
T Consensus        16 ~~~dv~~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~~~   77 (185)
T cd03136          16 SAIEPLRAANRLAGRELYRWRVLSLDGA----------------PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLGAR   77 (185)
T ss_pred             HHHHHHHHHHHhcCCcceEEEEEcCCCC----------------eeecCCCcEEeCCcccccc--CCCCEEEEeCCCCcc
Confidence            4778887664       89999999865                4778899999999988754  689999999998766


Q ss_pred             hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-C-CeeecCCCcceEEEcCCeEeC
Q 029299           75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-G-ASWIEPETMAACVVDGNIITG  152 (195)
Q Consensus        75 ~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g-~~~~~~~~~~~~v~Dg~iiT~  152 (195)
                       +..++.+++||++++++++.|+++|+|+++|+++|+|+|+++|+||...+.+++. + ..+.+.    .++.||+++||
T Consensus        78 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~----~~v~dg~i~Ta  152 (185)
T cd03136          78 -RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRD----LFEIDGDRLTC  152 (185)
T ss_pred             -ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccC----eEEEcCCEEEe
Confidence             6789999999999999999999999999999999999999999999999999874 3 444333    48999999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCcc-ccc-ccceee
Q 029299          153 ATYEGHPEFIRLFLKALGGTI-TGS-DKRILF  182 (195)
Q Consensus       153 ~g~~~~~~~~l~li~~l~~~~-a~~-~~~~~~  182 (195)
                      +|+.++++|++++|+++.++. +.+ ++.++|
T Consensus       153 ~g~~~~~d~~l~ii~~~~g~~~a~~va~~~~~  184 (185)
T cd03136         153 AGGTAALDLMLELIARDHGAALAARVAEQFLH  184 (185)
T ss_pred             ccHHHHHHHHHHHHHHHhCHHHHHHHHHHHcc
Confidence            999999999999999888876 444 444443

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=1.3e-29  Score=193.98  Aligned_cols=149  Identities=28%  Similarity=0.422  Sum_probs=125.4

Q ss_pred             chhHHHHhC-CCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccCh
Q 029299            2 VPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~-G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~   80 (195)
                      .|+++|+++ ++++++++++++                ++++++|..+.++.++++.+..+||+||||||..... ..++
T Consensus        16 ~~~~~l~~~~~~~~~~~s~~~~----------------~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~-~~~~   78 (170)
T cd03140          16 YLAALLNSYEGFEVRTVSPTGE----------------PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDN-PEAP   78 (170)
T ss_pred             HHHHHhcccCCcEEEEEeCCCC----------------eeEecCCeEEccccchhHCCHhHccEEEEcCCccccc-CCcH
Confidence            689999997 899999999875                4788999999999999987657899999999976543 3678


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCC-chHHHHHC--CCeeecCCCcceEEEcCCeEeCCCCCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPP-VKPVLIAA--GASWIEPETMAACVVDGNIITGATYEG  157 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~-~~~~l~~~--g~~~~~~~~~~~~v~Dg~iiT~~g~~~  157 (195)
                      .+.+||+++++++++|+++|+|+++||++|+|+|+++|+||. ..+.++++  +..+....   .+++|||+|||+| .+
T Consensus        79 ~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~---~~v~dg~iiT~~g-~a  154 (170)
T cd03140          79 DLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEP---QAVSDGNLITANG-TA  154 (170)
T ss_pred             HHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccC---cEEEcCCEEECCC-cC
Confidence            999999999999999999999999999999999999999985 44555442  43333332   4999999999987 56


Q ss_pred             HHHHHHHHHHHHcC
Q 029299          158 HPEFIRLFLKALGG  171 (195)
Q Consensus       158 ~~~~~l~li~~l~~  171 (195)
                      +.+|++++|+.++.
T Consensus       155 ~~d~al~~i~~l~~  168 (170)
T cd03140         155 PVEFAAEILRALDV  168 (170)
T ss_pred             HHHHHHHHHHHcCC
Confidence            89999999998753

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.96  E-value=4.9e-29  Score=189.87  Aligned_cols=146  Identities=25%  Similarity=0.401  Sum_probs=124.3

Q ss_pred             chhHHHHhCC-------CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299            2 VPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE   74 (195)
Q Consensus         2 ~p~~~l~~~G-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~   74 (195)
                      .|++.|+.++       |++.+++++++                ++.+++|..+.++..+++  ..++|+||||||....
T Consensus        13 ~~~d~l~~a~~~~~~~~~~~~~vs~~~~----------------~v~~s~g~~i~~~~~~~~--~~~~D~lvvpg~~~~~   74 (166)
T PF13278_consen   13 GPLDVLRAANRLSGEPLFEVRLVSPTGG----------------PVTSSSGLRIQPDGSLDD--APDFDILVVPGGPGFD   74 (166)
T ss_dssp             HHHHHHTTCTHHCTTTTEEEEEEESSSC----------------EEEBTTSEEEEESEETCC--CSCCSEEEEE-STTHH
T ss_pred             HHHHHHHhchhhcCCCCeEEEEEecCCC----------------eeeecCCeEEEeccChhh--cccCCEEEeCCCCCch
Confidence            4678888888       99999999875                588899999999999998  4799999999999844


Q ss_pred             hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-CCeeecCCCcceEEEcCCeEeCC
Q 029299           75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPETMAACVVDGNIITGA  153 (195)
Q Consensus        75 ~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g~~~~~~~~~~~~v~Dg~iiT~~  153 (195)
                      ....++.+++||+++++++++|+++|+|+++||++|+|+|+++|+||...+.++++ +...+..+  ..++.|||++||+
T Consensus        75 ~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~--~~~v~dg~i~Ta~  152 (166)
T PF13278_consen   75 AAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSD--QLFVDDGNIITAG  152 (166)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TS--SSEEEETTEEEES
T ss_pred             hcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCC--CEEEECCCeEEec
Confidence            45678999999999999999999999999999999999999999999999999986 55544322  2599999999999


Q ss_pred             CCCCHHHHHHHHHH
Q 029299          154 TYEGHPEFIRLFLK  167 (195)
Q Consensus       154 g~~~~~~~~l~li~  167 (195)
                      |+.+++|+++++||
T Consensus       153 g~~~~~dl~l~li~  166 (166)
T PF13278_consen  153 GPTAAIDLALYLIE  166 (166)
T ss_dssp             SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999996

...

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.96  E-value=3.7e-29  Score=195.15  Aligned_cols=146  Identities=22%  Similarity=0.283  Sum_probs=126.5

Q ss_pred             CCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-h--hhccChHHHHHH
Q 029299           10 FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-E--YLAMNDSVIDLV   86 (195)
Q Consensus        10 ~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~--~l~~~~~l~~~l   86 (195)
                      .+|+|+++|++++                ++.+++|.++.+|.++++.  ++||+||||||.+. .  .+..++.+++||
T Consensus        36 ~~~~v~~vs~~~~----------------~v~s~~g~~i~~d~~~~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l   97 (195)
T cd03138          36 PPFEVRLVSLDGG----------------PVLLAGGILILPDATLADV--PAPDLVIVPGLGGDPDELLLADNPALIAWL   97 (195)
T ss_pred             CCeEEEEEcCCCC----------------eeecCCCceeccccccccc--CCCCEEEECCCcCCchhhhhhccHHHHHHH
Confidence            5799999999875                4778899999999988764  68999999998764 3  466789999999


Q ss_pred             HHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-C-CeeecCCCcceEEEcCCeEeCCCCCCHHHHHHH
Q 029299           87 RKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-G-ASWIEPETMAACVVDGNIITGATYEGHPEFIRL  164 (195)
Q Consensus        87 ~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g-~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~  164 (195)
                      +++++++++|++||+|+++|+++|+|+|+++|+||...+.+++. + ..+.+..   .++.||+++||+|+.++++|+++
T Consensus        98 ~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~  174 (195)
T cd03138          98 RRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDR---VVVTDGNLITAGGAMAWADLALH  174 (195)
T ss_pred             HHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCc---EEEeCCCEEEcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999874 3 3444323   58999999999999999999999


Q ss_pred             HHHHHcCcc-ccc
Q 029299          165 FLKALGGTI-TGS  176 (195)
Q Consensus       165 li~~l~~~~-a~~  176 (195)
                      +|+++.++. +++
T Consensus       175 li~~~~G~~~a~~  187 (195)
T cd03138         175 LIERLAGPELAQL  187 (195)
T ss_pred             HHHHHhCHHHHHH
Confidence            999877765 555

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.96  E-value=5.4e-29  Score=186.34  Aligned_cols=141  Identities=39%  Similarity=0.724  Sum_probs=124.0

Q ss_pred             eEEEeCCCCCCCCCCCccccCCCCccccccccC---cceeeccCCCCCCCCCcCEEEEcCCCC-hhhhccC-hHHHHHHH
Q 029299           13 SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG---HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMN-DSVIDLVR   87 (195)
Q Consensus        13 ~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g---~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~~-~~l~~~l~   87 (195)
                      +|+++++..+               +.++++.|   .++.++.++++++..+||+||||||++ +..+..+ +.+.++|+
T Consensus         1 ~V~~vs~~~~---------------~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~   65 (147)
T PF01965_consen    1 KVDVVSPGDG---------------KEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLK   65 (147)
T ss_dssp             EEEEEESSSS---------------SEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHH
T ss_pred             CEEEEECCCC---------------CeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHH
Confidence            5788888654               26888888   999999999999988999999999998 5667645 99999999


Q ss_pred             HHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcC-CeEeCCCCCCHHHHHHHHH
Q 029299           88 KFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG-NIITGATYEGHPEFIRLFL  166 (195)
Q Consensus        88 ~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg-~iiT~~g~~~~~~~~l~li  166 (195)
                      ++++++|+|++||+|+.+|+++|+|+|+++|+|+...+.++..|..|.+...  .+++|+ |+||++|+.++.+|++.++
T Consensus        66 ~~~~~~k~iaaIC~g~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~iv  143 (147)
T PF01965_consen   66 EFYEAGKPIAAICHGPAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIV  143 (147)
T ss_dssp             HHHHTT-EEEEETTCHHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHH
T ss_pred             HHHHcCCeEEecCCCcchhhccCccCCceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999988889999998431  388999 9999999999999999999


Q ss_pred             HHHc
Q 029299          167 KALG  170 (195)
Q Consensus       167 ~~l~  170 (195)
                      +.|+
T Consensus       144 e~L~  147 (147)
T PF01965_consen  144 EALG  147 (147)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9874

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.95  E-value=9.6e-28  Score=187.51  Aligned_cols=171  Identities=21%  Similarity=0.384  Sum_probs=137.5

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC-hhhhccC
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMN   79 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~~   79 (195)
                      +.|+++|+++|++|+++|+.++.             ..+++++.|..+.++.++++++..+||+|+||||.+ ...+..+
T Consensus        19 ~~p~~~l~~ag~~v~~~s~~~~~-------------~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~   85 (196)
T PRK11574         19 VTTIDLLVRGGIKVTTASVASDG-------------NLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDS   85 (196)
T ss_pred             hHHHHHHHHCCCeEEEEEccCCC-------------CceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhC
Confidence            36999999999999999986421             025888999999999999887667899999999974 4445678


Q ss_pred             hHHHHHHHHHHhCCCeEEEecHHHHH-HHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcC--CeEeCCCCC
Q 029299           80 DSVIDLVRKFSNSGKTIASICHGQLI-LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG--NIITGATYE  156 (195)
Q Consensus        80 ~~l~~~l~~~~~~~k~i~aic~G~~l-La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg--~iiT~~g~~  156 (195)
                      +.+.+||+++++++++|++||+|+++ |+.+|+++|+++|.++...+.+.  ...+.+.    .+++|+  |+|||+|+.
T Consensus        86 ~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p--~~~~~~~----~~v~d~~~~iiT~~G~~  159 (196)
T PRK11574         86 PLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIP--AEQWQDK----RVVWDARVNLLTSQGPG  159 (196)
T ss_pred             HHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcc--cCcccCC----CEEEeCCccEEeCCCcc
Confidence            88999999999999999999999985 66799999999998877654332  2344433    367775  999999999


Q ss_pred             CHHHHHHHHHHHHcCcc-ccc-ccceeeeccCcccc
Q 029299          157 GHPEFIRLFLKALGGTI-TGS-DKRILFLCGVSFCF  190 (195)
Q Consensus       157 ~~~~~~l~li~~l~~~~-a~~-~~~~~~~~~~~~~~  190 (195)
                      +++||++++|+++.+.. +.+ ++.+++..++--||
T Consensus       160 a~~dlal~li~~~~G~~~a~~va~~~~~~~~~~~~~  195 (196)
T PRK11574        160 TAIDFALKIIDLLVGREKAHEVASQLVMAAGIYNYY  195 (196)
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHhhhccCccccccc
Confidence            99999999999888875 555 66777776665554

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.95  E-value=2.8e-27  Score=195.87  Aligned_cols=139  Identities=18%  Similarity=0.300  Sum_probs=120.1

Q ss_pred             ccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEe
Q 029299           39 TYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT  118 (195)
Q Consensus        39 ~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T  118 (195)
                      +|.+++|+.|.+|..++..  ..+|+++++||.++......+++.+|||+.+++|..+++||+|+++||++|||+|+++|
T Consensus        56 ~V~ss~G~~i~~d~~~~~~--~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrat  133 (328)
T COG4977          56 PVRSSSGLSIAPDGGLEAA--PPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRAT  133 (328)
T ss_pred             CcccCCCceEecCCccccc--CcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCee
Confidence            5889999999999999986  45999999999887655445889999999999999999999999999999999999999


Q ss_pred             cCCCchHHHHH-CCCeeecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcCc-cccc-ccceee
Q 029299          119 AYPPVKPVLIA-AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRILF  182 (195)
Q Consensus       119 ~~~~~~~~l~~-~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~~-~a~~-~~~~~~  182 (195)
                      +||...+.|++ +|.+....   ..|++||+++||+|+.+++||+++||++..+. .+.+ ++.+++
T Consensus       134 tHW~~~~~f~e~FP~v~~~~---~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~  197 (328)
T COG4977         134 THWEHAEDFQERFPDVRVTD---RLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVV  197 (328)
T ss_pred             eccccHHHHHHhCCCCCCCC---ceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhh
Confidence            99999999988 57665333   37999999999999999999999999866655 5666 544444

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.95  E-value=1.8e-26  Score=179.11  Aligned_cols=159  Identities=42%  Similarity=0.736  Sum_probs=136.7

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCcccccccc-CcceeeccCCCCCCCCCcCEEEEcCC-CChhhhcc
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR-GHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAM   78 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~-g~~i~~~~~~~~~~~~~~D~livpGG-~~~~~l~~   78 (195)
                      +.||+.|+++|++++++++.++-              +.+.++. +..+.++..+++++..+||+|++||| +++..+..
T Consensus        19 ~~p~~~l~~ag~~v~~~~~~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~   84 (188)
T COG0693          19 IVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRP   84 (188)
T ss_pred             hHHHHHHHHCCCeEEEEecCCCc--------------ceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccC
Confidence            47999999999999999998641              1233344 46677778888887789999999999 88877767


Q ss_pred             ChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC-CCCCceEecCCCchHHHHH----CCCeeecCCC-cceEEEcCC-eEe
Q 029299           79 NDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIA----AGASWIEPET-MAACVVDGN-IIT  151 (195)
Q Consensus        79 ~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG-lL~g~~~T~~~~~~~~l~~----~g~~~~~~~~-~~~~v~Dg~-iiT  151 (195)
                      ++.++++++++++++|+|++||+|+++|+.+| +++|+++|+++...+.+..    .|+.|++... ...++.||+ ++|
T Consensus        85 ~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~lvt  164 (188)
T COG0693          85 DPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVT  164 (188)
T ss_pred             cHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCeEEE
Confidence            79999999999999999999999999999999 9999999999999888877    6899999831 124999999 999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCcc
Q 029299          152 GATYEGHPEFIRLFLKALGGTI  173 (195)
Q Consensus       152 ~~g~~~~~~~~l~li~~l~~~~  173 (195)
                      +.++.++..++..+++.+....
T Consensus       165 ~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         165 GRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             cCCcccHHHHHHHHHHHHhccc
Confidence            9999999999999999887653

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.95  E-value=6.4e-27  Score=195.77  Aligned_cols=161  Identities=20%  Similarity=0.308  Sum_probs=133.1

Q ss_pred             chhHHHHhC-------CCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299            2 VPFQALLAF-------GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE   74 (195)
Q Consensus         2 ~p~~~l~~~-------G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~   74 (195)
                      .|++.|..+       .|+|+++|++++                +|++++|..+.+|..+++.  ++||+||||||.+..
T Consensus        27 ~~~dvl~~a~~~~~~~~~~v~~vs~~~~----------------~v~ss~g~~i~~d~~~~~~--~~~D~livpGg~~~~   88 (322)
T PRK09393         27 CAVEIFGLPRPELGVDWYRFAVAAVEPG----------------PLRAAGGITVVADGGLELL--DRADTIVIPGWRGPD   88 (322)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEEECCCC----------------ceEeCCCcEEeCCCCcccc--CCCCEEEECCCCccc
Confidence            356666432       268999999765                4888999999999999864  689999999997654


Q ss_pred             hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHH-CCCeeecCCCcceEEEcCCeEeCC
Q 029299           75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETMAACVVDGNIITGA  153 (195)
Q Consensus        75 ~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~-~g~~~~~~~~~~~~v~Dg~iiT~~  153 (195)
                      . ..++.+.+||+++++++++|++||+|+++||++|||+|+++|+||...+.+++ +|...+..+  ..++.|||++||+
T Consensus        89 ~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~--~~~v~~g~iiT~~  165 (322)
T PRK09393         89 A-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPD--VLYVDEGQILTSA  165 (322)
T ss_pred             c-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCC--ceEEecCCEEecc
Confidence            3 45889999999999999999999999999999999999999999999999987 465555443  2588999999999


Q ss_pred             CCCCHHHHHHHHHHHHcCcc-ccc-ccceeee
Q 029299          154 TYEGHPEFIRLFLKALGGTI-TGS-DKRILFL  183 (195)
Q Consensus       154 g~~~~~~~~l~li~~l~~~~-a~~-~~~~~~~  183 (195)
                      |+.+++++++++|++..+.. +.. +..+++.
T Consensus       166 G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~  197 (322)
T PRK09393        166 GSAAGIDLCLHLVRRDFGSEAANRVARRLVVP  197 (322)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcC
Confidence            99999999999999877765 444 4455543

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.93  E-value=4.6e-25  Score=173.83  Aligned_cols=158  Identities=24%  Similarity=0.351  Sum_probs=118.8

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeec-------cCCCCCCCCCcCEEEEcCCCCh
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATFDEIDPTKYDGLVIPGGRAP   73 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------~~~~~~~~~~~D~livpGG~~~   73 (195)
                      ++||++|+++|++|+++||.+++.....    ...+ ..+..+.+..+..+       .++++++..+||+||+|||+++
T Consensus        20 ~~p~~~L~raG~~V~~aS~~gg~~~~d~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~   94 (213)
T cd03133          20 VLTLLALDRAGAEVQCFAPDIEQMHVVN----HLTG-EAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGA   94 (213)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCccCccc----cccc-cccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCch
Confidence            4799999999999999999775422110    1111 12334445555444       6788888889999999999864


Q ss_pred             -hhh----------ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCC--CchHHHHHCCCeeecCCCc
Q 029299           74 -EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP--PVKPVLIAAGASWIEPETM  140 (195)
Q Consensus        74 -~~l----------~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~--~~~~~l~~~g~~~~~~~~~  140 (195)
                       ..+          ..++.++++++++++++|+|++||+|+++|++++. +||++|+|+  ...+.+++.|+.|.+.+.+
T Consensus        95 ~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d~~~~  173 (213)
T cd03133          95 AKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVNCPVE  173 (213)
T ss_pred             hhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEeCCCC
Confidence             333          24789999999999999999999999999999766 999999999  7888899999999875322


Q ss_pred             ceEEEc--CCeEeCCCC---CCHHHHHHHH
Q 029299          141 AACVVD--GNIITGATY---EGHPEFIRLF  165 (195)
Q Consensus       141 ~~~v~D--g~iiT~~g~---~~~~~~~l~l  165 (195)
                       .+++|  ||+|||+..   .+..+.++.+
T Consensus       174 -~vvvd~dg~lITs~~~~~~~~~~~~~~~~  202 (213)
T cd03133         174 -EIVVDEKNKVVTTPAYMLADSIHEIADGI  202 (213)
T ss_pred             -eEEEECCCCEEeCccccCCCCHHHHHHhH
Confidence             25555  789999985   3445555544

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.93  E-value=5.3e-25  Score=174.26  Aligned_cols=149  Identities=26%  Similarity=0.346  Sum_probs=113.8

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeec-------cCCCCCCCCCcCEEEEcCCCCh
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATFDEIDPTKYDGLVIPGGRAP   73 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------~~~~~~~~~~~D~livpGG~~~   73 (195)
                      ++||++|+++|++|+++||.+++.....    +..+ ..+.+..+..+..+       .++++++..+||+||+|||+++
T Consensus        23 ~~P~~~L~~aG~~V~~aSp~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~   97 (217)
T PRK11780         23 VLTLLALDRAGAEAVCFAPDIPQLHVIN----HLTG-EEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGA   97 (217)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCcccccc----Cccc-cccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCch
Confidence            4799999999999999999875321100    1111 12333334434332       6788888889999999999874


Q ss_pred             -hh----------hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecC--CCchHHHHHCCCeeecCCCc
Q 029299           74 -EY----------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY--PPVKPVLIAAGASWIEPETM  140 (195)
Q Consensus        74 -~~----------l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~--~~~~~~l~~~g~~~~~~~~~  140 (195)
                       .+          +..++.+.+++++|+++||+|++||+|+++|+.+.. +||++|++  +.....+++.|+.|++.+. 
T Consensus        98 ~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~~~~~~~~~~~aGa~~vd~~~-  175 (217)
T PRK11780         98 AKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGNDEDTAAAIEKMGGEHVDCPV-  175 (217)
T ss_pred             hhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecCChhhHHHHHHCCCEEEcCCC-
Confidence             22          345899999999999999999999999999998632 89999999  8889999999999998743 


Q ss_pred             ceEEEc--CCeEeCCCCC
Q 029299          141 AACVVD--GNIITGATYE  156 (195)
Q Consensus       141 ~~~v~D--g~iiT~~g~~  156 (195)
                      ..+|+|  +|+||+....
T Consensus       176 ~~vvvD~~~~lvt~~~~~  193 (217)
T PRK11780        176 DDIVVDEENKVVTTPAYM  193 (217)
T ss_pred             CeEEEECCCCEEeCCccc
Confidence            236777  7899999743

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.79  E-value=1.1e-18  Score=129.56  Aligned_cols=95  Identities=24%  Similarity=0.378  Sum_probs=85.1

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~l~~~~   80 (195)
                      .|++.|+.+|++++++|++++                +++++.|.++.++.++++.+..+||+|+||||.+. ..+..++
T Consensus        19 ~~~~~~~~a~~~v~vvs~~~~----------------~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~   82 (142)
T cd03132          19 ALKAALKAAGANVKVVAPTLG----------------GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSG   82 (142)
T ss_pred             HHHHHHHHCCCEEEEEecCcC----------------ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccCh
Confidence            589999999999999999875                47788999999999999876668999999999865 3346789


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVV  112 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL  112 (195)
                      .+.+||+++++++|+|+++|+|+++|+++|+|
T Consensus        83 ~l~~~l~~~~~~~~~I~aic~G~~~La~aGll  114 (142)
T cd03132          83 RALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP  114 (142)
T ss_pred             HHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence            99999999999999999999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.48  E-value=1.4e-13  Score=124.86  Aligned_cols=96  Identities=23%  Similarity=0.263  Sum_probs=86.8

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC-ChhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR-APEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~l~~~~   80 (195)
                      .|++.|.++|++|+++++.++                +|+++.|..+.++.++++++...||+|+||||. ++..+..++
T Consensus       615 ~~~daL~~AGa~V~VVSp~~G----------------~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~  678 (752)
T PRK11249        615 AILKALKAKGVHAKLLYPRMG----------------EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNG  678 (752)
T ss_pred             HHHHHHHHCCCEEEEEECCCC----------------eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCH
Confidence            478999999999999999875                477889999999999999876789999999996 566677899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVK  113 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~  113 (195)
                      .+++||+++++++|+|+++|+|+.+|+++||.+
T Consensus       679 ~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~  711 (752)
T PRK11249        679 DARYYLLEAYKHLKPIALAGDARKLKAALKLPD  711 (752)
T ss_pred             HHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence            999999999999999999999999999999854

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.30  E-value=1.3e-11  Score=99.26  Aligned_cols=114  Identities=20%  Similarity=0.336  Sum_probs=77.3

Q ss_pred             hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hhhc-----
Q 029299            4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLA-----   77 (195)
Q Consensus         4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~l~-----   77 (195)
                      ++.|+++|+++.+++....                 +.          .   ..+..+||+||+|||... +.+.     
T Consensus        16 ~~al~~aG~~v~~v~~~~~-----------------~~----------~---~~~l~~~d~liipGG~~~~d~l~~~~~~   65 (238)
T cd01740          16 AYAFELAGFEAEDVWHNDL-----------------LA----------G---RKDLDDYDGVVLPGGFSYGDYLRAGAIA   65 (238)
T ss_pred             HHHHHHcCCCEEEEeccCC-----------------cc----------c---cCCHhhCCEEEECCCCCccccccccccc
Confidence            5678889999998876421                 00          0   112367999999999642 2221     


Q ss_pred             cChH-HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCC
Q 029299           78 MNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA  153 (195)
Q Consensus        78 ~~~~-l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~  153 (195)
                      .... +.++|+++.++++++++||+|.++|+++|+|.|+. +.++......+..+ .|++.    .++.+++++|+.
T Consensus        66 ~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~----~v~~~~si~t~~  136 (238)
T cd01740          66 AASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTL----RVENNDSPFTKG  136 (238)
T ss_pred             ccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEE----EEcCCCCceecC
Confidence            1223 88999999999999999999999999999999976 55554332221111 23333    256677888876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.23  E-value=6.4e-11  Score=88.02  Aligned_cols=155  Identities=17%  Similarity=0.226  Sum_probs=106.5

Q ss_pred             hhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCc------cccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hh
Q 029299            3 PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH------QTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EY   75 (195)
Q Consensus         3 p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~------~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~   75 (195)
                      .+..+.+.|.++.++.|+..+.+..    ++.++.      +...++..+.----.+++..++++||+||+|||+|+ ++
T Consensus        25 tllai~r~GA~~~cFAP~~~Q~hVi----NHlTGE~m~EtRNVLvEsARIaRG~i~~l~~a~~e~~DALivPGGFGAAKN  100 (217)
T COG3155          25 TLLAISRSGAQAVCFAPDKQQVHVI----NHLTGEAMPETRNVLVESARIARGEIRPLAQADAEELDALIVPGGFGAAKN  100 (217)
T ss_pred             HHHHHHhcCceeEEecCCchhhhhh----hhccccccchhhhHHHHHHHHhhccccchhhcCHHhcceeeccCccchhhh
Confidence            4678899999999999998664432    222221      111222222222334566667789999999999985 33


Q ss_pred             h----------ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC-CCCCCceEec--CCCchHHHHHCCCeeecCCCcce
Q 029299           76 L----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTA--YPPVKPVLIAAGASWIEPETMAA  142 (195)
Q Consensus        76 l----------~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a-GlL~g~~~T~--~~~~~~~l~~~g~~~~~~~~~~~  142 (195)
                      +          .-++++..+.+.+++.|||++-+|.++.+|.+- |  .+.+.|.  .....+.+++.|+.++..+++..
T Consensus       101 LsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g--~~~~~TIGnD~dTa~a~~~mG~eHv~cPvd~i  178 (217)
T COG3155         101 LSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG--FPLRLTIGNDIDTAEALEEMGAEHVPCPVDDI  178 (217)
T ss_pred             hHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC--CceeEEecCCccHHHHHHHhCcccCCCCccce
Confidence            2          246899999999999999999999999999874 3  2345554  56678889999999999886544


Q ss_pred             EEE-cCCeEeCCCCCCHHHHHHHHHH
Q 029299          143 CVV-DGNIITGATYEGHPEFIRLFLK  167 (195)
Q Consensus       143 ~v~-Dg~iiT~~g~~~~~~~~l~li~  167 (195)
                      ++. +++++|+.    +.-++..+-+
T Consensus       179 V~D~~~KvvtTP----AYMLA~~Iae  200 (217)
T COG3155         179 VVDEDNKVVTTP----AYMLAQNIAE  200 (217)
T ss_pred             eecCCCceecCh----HHHHHHHHHH
Confidence            443 36788864    3334444444

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.11  E-value=5.5e-10  Score=88.82  Aligned_cols=57  Identities=30%  Similarity=0.564  Sum_probs=48.4

Q ss_pred             CCCcCEEEEcCCCChh------hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCc
Q 029299           59 PTKYDGLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  115 (195)
Q Consensus        59 ~~~~D~livpGG~~~~------~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~  115 (195)
                      .++||+|+||||....      .....+.+.+||++++++++++++||+|+++|+++|||+|+
T Consensus        39 l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~  101 (219)
T PRK03619         39 LDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGA  101 (219)
T ss_pred             CCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCe
Confidence            3579999999996531      12345778999999999999999999999999999999985

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.08  E-value=4.5e-10  Score=91.42  Aligned_cols=83  Identities=24%  Similarity=0.430  Sum_probs=59.9

Q ss_pred             hhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hhhccC--
Q 029299            3 PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMN--   79 (195)
Q Consensus         3 p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~l~~~--   79 (195)
                      +++.|+++|+++++++....                           .+.   ..+.++||+|+||||.+. +.+...  
T Consensus        20 ~~~Al~~aG~~v~~v~~~~~---------------------------~~~---~~~l~~~DgLvipGGfs~gD~l~~g~~   69 (261)
T PRK01175         20 TVKAFRRLGVEPEYVHINDL---------------------------AAE---RKSVSDYDCLVIPGGFSAGDYIRAGAI   69 (261)
T ss_pred             HHHHHHHCCCcEEEEeeccc---------------------------ccc---ccchhhCCEEEECCCCCcccccccchh
Confidence            46778888888888876410                           000   012367999999999643 222111  


Q ss_pred             ------hHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCc
Q 029299           80 ------DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  115 (195)
Q Consensus        80 ------~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~  115 (195)
                            +.+.+.|+++.+++|++.+||+|.++|+++|+|.|.
T Consensus        70 ~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~  111 (261)
T PRK01175         70 FAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGF  111 (261)
T ss_pred             hHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCCC
Confidence                  234588999999999999999999999999999983

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.93  E-value=8e-09  Score=82.61  Aligned_cols=56  Identities=34%  Similarity=0.697  Sum_probs=47.0

Q ss_pred             CCcCEEEEcCCCCh-h-----hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCc
Q 029299           60 TKYDGLVIPGGRAP-E-----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  115 (195)
Q Consensus        60 ~~~D~livpGG~~~-~-----~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~  115 (195)
                      +++|+||+|||... +     .+.....+.++|+++.+++++|.+||+|.++|+++|+|.|.
T Consensus        39 ~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~  100 (227)
T TIGR01737        39 PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA  100 (227)
T ss_pred             CCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence            57999999999642 1     12235668899999999999999999999999999999884

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=98.89  E-value=4.8e-09  Score=82.38  Aligned_cols=54  Identities=41%  Similarity=0.732  Sum_probs=46.7

Q ss_pred             CcCEEEEcCCCChhh-h-----ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCC
Q 029299           61 KYDGLVIPGGRAPEY-L-----AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG  114 (195)
Q Consensus        61 ~~D~livpGG~~~~~-l-----~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g  114 (195)
                      +||+|++|||+..-+ +     ..-..+.+-+++++++|+++.+||+|-++|.++|||.|
T Consensus        43 ~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG  102 (231)
T COG0047          43 DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG  102 (231)
T ss_pred             CccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence            799999999975422 2     23367889999999999999999999999999999999

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.79  E-value=2.8e-08  Score=77.83  Aligned_cols=73  Identities=32%  Similarity=0.452  Sum_probs=57.9

Q ss_pred             hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh---hhhccCh
Q 029299            4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP---EYLAMND   80 (195)
Q Consensus         4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~---~~l~~~~   80 (195)
                      ++.|+++|++|.++++..+                                ++  ..++|+||+|||...   ..+..+.
T Consensus        17 ~~~l~~~G~~v~~~s~~~~--------------------------------~~--l~~~D~lilPGG~~~~~~~~L~~~~   62 (198)
T cd03130          17 LELLEAAGAELVPFSPLKD--------------------------------EE--LPDADGLYLGGGYPELFAEELSANQ   62 (198)
T ss_pred             HHHHHHCCCEEEEECCCCC--------------------------------CC--CCCCCEEEECCCchHHHHHHHHhhH
Confidence            4678889999999887421                                01  234999999998642   4565667


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAAD  110 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aG  110 (195)
                      .+.+.|+++.++|++|.+||.|.++|++..
T Consensus        63 ~~~~~i~~~~~~g~pilgICgG~qlL~~~~   92 (198)
T cd03130          63 SMRESIRAFAESGGPIYAECGGLMYLGESL   92 (198)
T ss_pred             HHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence            899999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.74  E-value=2.6e-08  Score=77.16  Aligned_cols=50  Identities=32%  Similarity=0.590  Sum_probs=42.6

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++||+||||||.+..  .+..+..+.+.|+++.++++++.+||.|..+|++.
T Consensus        35 ~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~   86 (184)
T TIGR03800        35 DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE   86 (184)
T ss_pred             ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence            479999999997542  34455678899999999999999999999999988

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.71  E-value=2.7e-08  Score=76.36  Aligned_cols=54  Identities=28%  Similarity=0.537  Sum_probs=44.3

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh----CCCCCC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA----ADVVKG  114 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~----aGlL~g  114 (195)
                      .+||.||+|||.+..  .+..+..+.+.|+++.+ +|++++||.|+.+|++    .|++++
T Consensus        38 ~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg   97 (179)
T PRK13526         38 DSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL   97 (179)
T ss_pred             hCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence            579999999997654  45566779999999885 7899999999999999    355554

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.63  E-value=4e-08  Score=79.88  Aligned_cols=57  Identities=35%  Similarity=0.648  Sum_probs=43.9

Q ss_pred             CCCcCEEEEcCCCChh-----------hhccChHHHHHHHHHHhC-CCeEEEecHHHHHHHhCCCCCCc
Q 029299           59 PTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGR  115 (195)
Q Consensus        59 ~~~~D~livpGG~~~~-----------~l~~~~~l~~~l~~~~~~-~k~i~aic~G~~lLa~aGlL~g~  115 (195)
                      ..+||+|++|||++..           .+..++.+.+.|++|.++ ++++.+||+|.++|.++|||.+.
T Consensus        44 l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~  112 (259)
T PF13507_consen   44 LDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGG  112 (259)
T ss_dssp             GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT-
T ss_pred             hhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCc
Confidence            4689999999997531           123356778999999999 99999999999999999999984

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.61  E-value=3.3e-07  Score=62.73  Aligned_cols=76  Identities=34%  Similarity=0.664  Sum_probs=60.6

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhh-hccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY-LAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-l~~~~   80 (195)
                      .+++.|+++++++++++..+.+                ...             .....+||+|++|||..... ...+.
T Consensus        16 ~~~~~l~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~   66 (115)
T cd01653          16 SPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLILPGGPGTPDDLARDE   66 (115)
T ss_pred             HHHHHHHHCCCeEEEEcCCCCc----------------eec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence            3678899999999999998643                111             12246899999999876432 22478


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHH
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLIL  106 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lL  106 (195)
                      .++++++++.+++++++++|.|++++
T Consensus        67 ~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          67 ALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHHHHcCCEEEEECchhHhH
Confidence            99999999999999999999999998

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.49  E-value=4.5e-07  Score=70.56  Aligned_cols=50  Identities=30%  Similarity=0.627  Sum_probs=41.7

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++||+||+|||....  .+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus        37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~   88 (189)
T PRK13525         37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE   88 (189)
T ss_pred             ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            579999999997532  23345567899999999999999999999999984

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.42  E-value=5.9e-07  Score=70.39  Aligned_cols=50  Identities=28%  Similarity=0.584  Sum_probs=42.2

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||+||+|||++..  .+..+..+.++|+++.++++|+.+||.|.++|+++
T Consensus        42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~   93 (200)
T PRK13527         42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE   93 (200)
T ss_pred             ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            579999999997532  23345568999999999999999999999999987

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.42  E-value=9.3e-07  Score=69.03  Aligned_cols=51  Identities=20%  Similarity=0.466  Sum_probs=41.7

Q ss_pred             CCcCEEEEcCCCCh-hhhcc--ChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299           60 TKYDGLVIPGGRAP-EYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAAD  110 (195)
Q Consensus        60 ~~~D~livpGG~~~-~~l~~--~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG  110 (195)
                      .++|+||+|||... ..+..  +..+.+.|+++.++++||.+||.|.++|++.-
T Consensus        36 ~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~   89 (194)
T cd01750          36 GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI   89 (194)
T ss_pred             CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence            57899999999743 22222  45688999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.40  E-value=2e-06  Score=56.21  Aligned_cols=74  Identities=32%  Similarity=0.669  Sum_probs=57.0

Q ss_pred             hhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhh-hccChH
Q 029299            3 PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY-LAMNDS   81 (195)
Q Consensus         3 p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-l~~~~~   81 (195)
                      +++.+++.+++++++++...+..                .             .....++|+||+|||..... ...+..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~----------------~-------------~~~~~~~~~lii~g~~~~~~~~~~~~~   67 (92)
T cd03128          17 PLDALREAGAEVDVVSPDGGPVE----------------S-------------DVDLDDYDGLILPGGPGTPDDLAWDEA   67 (92)
T ss_pred             HHHHHHhCCCEEEEEeCCCCccc----------------c-------------cCCcccCCEEEECCCCcchhhhccCHH
Confidence            56788889999999998754200                0             12346899999999976432 224689


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHH
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLI  105 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~l  105 (195)
                      +.++++++.+++++++++|.|+++
T Consensus        68 ~~~~~~~~~~~~~~i~~~~~g~~~   91 (92)
T cd03128          68 LLALLREAAAAGKPVLGICLGAQL   91 (92)
T ss_pred             HHHHHHHHHHcCCEEEEEeccccc
Confidence            999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.34  E-value=1.3e-06  Score=68.52  Aligned_cols=50  Identities=28%  Similarity=0.432  Sum_probs=41.1

Q ss_pred             CCcCEEEEcCCCCh-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||+|++|||... ..+...+.+.++|+++.++++|+.+||.|.++|+++
T Consensus        37 ~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~   87 (200)
T PRK13143         37 LDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES   87 (200)
T ss_pred             ccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            47999999996433 223445678899999999999999999999999985

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.33  E-value=2.4e-06  Score=74.88  Aligned_cols=51  Identities=31%  Similarity=0.464  Sum_probs=44.3

Q ss_pred             CCCcCEEEEcCCCC---hhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~---~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+++|+|++|||..   ...+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus       285 l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~  338 (451)
T PRK01077        285 LPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES  338 (451)
T ss_pred             CCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            45899999999963   3446677889999999999999999999999999886

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=98.33  E-value=1.9e-06  Score=66.30  Aligned_cols=48  Identities=33%  Similarity=0.488  Sum_probs=40.4

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||+||++||++..  .+.....++++++.++++|+.+||.|.++|+.+
T Consensus        38 ~~~dgiil~GG~~~~--~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~   85 (178)
T cd01744          38 LDPDGIFLSNGPGDP--ALLDEAIKTVRKLLGKKIPIFGICLGHQLLALA   85 (178)
T ss_pred             cCCCEEEECCCCCCh--hHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence            479999999997532  124678889999999999999999999999985

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=98.24  E-value=3.1e-06  Score=66.16  Aligned_cols=50  Identities=26%  Similarity=0.363  Sum_probs=40.0

Q ss_pred             CCcCEEEEcCCCChhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||+||+||+..+..   ......+.++|+++.++++||.+||.|.++|+++
T Consensus        35 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~   87 (198)
T cd01748          35 LSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQLLFES   87 (198)
T ss_pred             ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence            4699999998644321   1233457899999999999999999999999997

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=98.22  E-value=3.3e-06  Score=65.28  Aligned_cols=50  Identities=34%  Similarity=0.673  Sum_probs=41.2

Q ss_pred             CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||...  .....+..+.++|+++.++++|+.++|.|..+|+++
T Consensus        34 ~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~   85 (183)
T cd01749          34 EGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKE   85 (183)
T ss_pred             ccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            57999999998642  223345567899999999999999999999999986

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.16  E-value=3.8e-06  Score=66.03  Aligned_cols=50  Identities=24%  Similarity=0.456  Sum_probs=39.4

Q ss_pred             CCcCEEEEcCCCCh-hhh--ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP-EYL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~-~~l--~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||.|||||+... ..+  ...+.+.++|+++.++++|+.+||.|.++|++.
T Consensus        36 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~   88 (205)
T PRK13141         36 LAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFES   88 (205)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence            47999999996432 211  123357899999999999999999999999986

>PRK07053 glutamine amidotransferase; Provisional

Probab=98.15  E-value=1.2e-05  Score=64.52  Aligned_cols=50  Identities=28%  Similarity=0.329  Sum_probs=40.9

Q ss_pred             CCcCEEEEcCCCC-hhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~-~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||+|||+||+. +.+   ......+.++|+++.+.++|+.+||.|..+|+++
T Consensus        46 ~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a   99 (234)
T PRK07053         46 LEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA   99 (234)
T ss_pred             cCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            4799999999863 321   1233578899999999999999999999999987

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=98.12  E-value=6.3e-06  Score=66.55  Aligned_cols=50  Identities=34%  Similarity=0.629  Sum_probs=41.5

Q ss_pred             CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||...  ..+.....+.+.|+++.++|+|+.++|.|..+|++.
T Consensus        37 ~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~   88 (248)
T PLN02832         37 EGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER   88 (248)
T ss_pred             ccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            57899999998753  334444468899999999999999999999999876

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=98.05  E-value=1.6e-05  Score=61.77  Aligned_cols=47  Identities=15%  Similarity=0.340  Sum_probs=38.4

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||.|||.||++...  ..+.+.++|++ +++++|+.+||-|.++|+.+
T Consensus        42 ~~~d~iIi~gGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~   88 (190)
T PRK06895         42 ENFSHILISPGPDVPR--AYPQLFAMLER-YHQHKSILGVCLGHQTLCEF   88 (190)
T ss_pred             ccCCEEEECCCCCChH--HhhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            4689999999887432  24567888986 78899999999999999987

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=98.05  E-value=8.5e-06  Score=61.53  Aligned_cols=52  Identities=27%  Similarity=0.473  Sum_probs=44.9

Q ss_pred             CCCcCEEEEcCCCCh---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299           59 PTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  110 (195)
Q Consensus        59 ~~~~D~livpGG~~~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG  110 (195)
                      ++++|+|++|||+-.   ..+..+..+.+.|+++.++|++|.++|.|-++|.+.=
T Consensus         5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i   59 (158)
T PF07685_consen    5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI   59 (158)
T ss_pred             CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence            578999999999742   3356678899999999999999999999999998864

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=98.01  E-value=1.5e-05  Score=61.74  Aligned_cols=46  Identities=22%  Similarity=0.455  Sum_probs=37.3

Q ss_pred             CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++|.||+|||.+...   +.....++++..++++|+.+||.|..+|+.+
T Consensus        41 ~~~glii~Gg~~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   86 (188)
T TIGR00888        41 NPKGIILSGGPSSVY---AENAPRADEKIFELGVPVLGICYGMQLMAKQ   86 (188)
T ss_pred             CCCEEEECCCCCCcC---cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence            467999999976432   2234678899999999999999999999986

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.00  E-value=1.5e-05  Score=76.69  Aligned_cols=57  Identities=23%  Similarity=0.288  Sum_probs=48.5

Q ss_pred             CCCcCEEEEcCCCChh-----------hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCc
Q 029299           59 PTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  115 (195)
Q Consensus        59 ~~~~D~livpGG~~~~-----------~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~  115 (195)
                      ..+|++|++|||++..           ....++.+.+-+++|+++++++.+||+|-++|.+.|||.+.
T Consensus      1029 l~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857      1029 IDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred             cccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence            4689999999997531           23456789999999999999999999999999999999864

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.98  E-value=2.8e-05  Score=68.18  Aligned_cols=65  Identities=22%  Similarity=0.395  Sum_probs=49.0

Q ss_pred             CcceeeccCCCCCCCCCcCEEEEcCCCC---hhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           45 GHNFALNATFDEIDPTKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        45 g~~i~~~~~~~~~~~~~~D~livpGG~~---~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      |..+..-.++.+-+.+++|+|++|||..   ...+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus       270 g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~  337 (449)
T TIGR00379       270 AAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS  337 (449)
T ss_pred             CCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            4444443333222335899999999974   2335567789999999999999999999999999886

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.94  E-value=3.7e-05  Score=74.59  Aligned_cols=58  Identities=19%  Similarity=0.406  Sum_probs=48.7

Q ss_pred             CCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecHHHHHHHhCCCCCCce
Q 029299           59 PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAADVVKGRK  116 (195)
Q Consensus        59 ~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~G~~lLa~aGlL~g~~  116 (195)
                      ..+|+.|++|||++.           ..+..++.+.+.+++|+ +.++++.+||+|.++|.+.||+.|..
T Consensus      1080 L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~ 1149 (1307)
T PLN03206       1080 LDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQ 1149 (1307)
T ss_pred             ccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCc
Confidence            578999999999742           12456788999999999 55999999999999999999998753

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.94  E-value=1.9e-05  Score=62.42  Aligned_cols=56  Identities=25%  Similarity=0.474  Sum_probs=42.0

Q ss_pred             CCcCEEEEcCCCChh----hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC---------CCCCCce
Q 029299           60 TKYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRK  116 (195)
Q Consensus        60 ~~~D~livpGG~~~~----~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a---------GlL~g~~  116 (195)
                      .++|.||+||+..+.    .+ ....+.+.|+++.++++|+.+||.|..+|++.         |+++|+-
T Consensus        38 ~~~d~iIlPG~g~~~~~~~~l-~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v  106 (210)
T CHL00188         38 AQVHALVLPGVGSFDLAMKKL-EKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQV  106 (210)
T ss_pred             hhCCEEEECCCCchHHHHHHH-HHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEE
Confidence            468999999953321    22 23346678888999999999999999999985         5677654

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.92  E-value=2.8e-05  Score=66.92  Aligned_cols=73  Identities=26%  Similarity=0.450  Sum_probs=60.2

Q ss_pred             hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC---hhhhccCh
Q 029299            4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA---PEYLAMND   80 (195)
Q Consensus         4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~---~~~l~~~~   80 (195)
                      ++.|++.|+++.++||-.+.                                ++ +++.|+|++|||+-   +..|..+.
T Consensus       264 l~~Lr~~GAelv~FSPL~D~--------------------------------~l-P~~~D~vYlgGGYPElfA~~L~~n~  310 (451)
T COG1797         264 LELLREAGAELVFFSPLADE--------------------------------EL-PPDVDAVYLGGGYPELFAEELSANE  310 (451)
T ss_pred             HHHHHHCCCEEEEeCCcCCC--------------------------------CC-CCCCCEEEeCCCChHHHHHHHhhCH
Confidence            46788899999999985321                                11 23589999999973   45688899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+.+.|+++++.|++|.+-|.|-+.|.+.
T Consensus       311 ~~~~~i~~~~~~G~piyaECGGlMYL~~~  339 (451)
T COG1797         311 SMRRAIKAFAAAGKPIYAECGGLMYLGES  339 (451)
T ss_pred             HHHHHHHHHHHcCCceEEecccceeehhh
Confidence            99999999999999999999999999886

>PRK06490 glutamine amidotransferase; Provisional

Probab=97.91  E-value=5.9e-05  Score=60.82  Aligned_cols=50  Identities=26%  Similarity=0.290  Sum_probs=40.5

Q ss_pred             CCcCEEEEcCCCCh-hh-hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~-~~-l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||.+||.||+.. .+ ......+.+||+++.++++|+.+||-|..+|+.+
T Consensus        51 ~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a  102 (239)
T PRK06490         51 EDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH  102 (239)
T ss_pred             cccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            57999999998753 11 1123457899999999999999999999999987

>PRK08250 glutamine amidotransferase; Provisional

Probab=97.91  E-value=2.8e-05  Score=62.54  Aligned_cols=50  Identities=20%  Similarity=0.404  Sum_probs=40.5

Q ss_pred             CCcCEEEEcCCCCh-hh-hccC-----hHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP-EY-LAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~-~~-l~~~-----~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||+|||.||+.. .. ....     ....++|+++.++++|+.+||.|..+|+.+
T Consensus        44 ~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  100 (235)
T PRK08250         44 DGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA  100 (235)
T ss_pred             cccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            57999999999643 21 1122     366899999999999999999999999987

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=97.90  E-value=5.1e-05  Score=58.22  Aligned_cols=48  Identities=21%  Similarity=0.385  Sum_probs=34.1

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+||.||+|||.+.......+.   +.++..+.++|+.+||.|.++|+.+
T Consensus        39 ~~~~dgvIl~Gg~~~~~~~~~~~---~~~~~~~~~~PilGIC~G~Qll~~~   86 (181)
T cd01742          39 LKNPKGIILSGGPSSVYEEDAPR---VDPEIFELGVPVLGICYGMQLIAKA   86 (181)
T ss_pred             ccCCCEEEECCCcccccccccch---hhHHHHhcCCCEEEEcHHHHHHHHh
Confidence            35799999999975322111223   3344555699999999999999985

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.87  E-value=2.4e-05  Score=60.46  Aligned_cols=51  Identities=35%  Similarity=0.561  Sum_probs=41.8

Q ss_pred             CCCcCEEEEcCCCChh---hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~---~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+||+||++||....   .....+.+.++|+++.++++++.+||.|..+|+.+
T Consensus        44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~   97 (188)
T cd01741          44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA   97 (188)
T ss_pred             cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            4689999999997532   12223678999999999999999999999999886

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=97.87  E-value=4.3e-05  Score=74.46  Aligned_cols=58  Identities=19%  Similarity=0.351  Sum_probs=48.9

Q ss_pred             CCCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecHHHHHHH-hCCCCCCc
Q 029299           58 DPTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICHGQLILA-AADVVKGR  115 (195)
Q Consensus        58 ~~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~G~~lLa-~aGlL~g~  115 (195)
                      +.++|++|++|||+..           ..+..++.+.+.+++|+ ++++++.+||+|.++|. +.||+.|.
T Consensus      1097 ~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1097 HLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred             chhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence            4578999999999632           12456788999999999 88999999999999999 99999874

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=97.86  E-value=3.2e-05  Score=60.04  Aligned_cols=47  Identities=23%  Similarity=0.336  Sum_probs=36.4

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||.||+-||++...  +.....++++. .++++|+.+||-|.++|+.+
T Consensus        42 ~~~d~iils~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a   88 (187)
T PRK08007         42 LKPQKIVISPGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA   88 (187)
T ss_pred             cCCCEEEEcCCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            3689999999987432  23345666766 57889999999999999986

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=97.83  E-value=5e-05  Score=64.69  Aligned_cols=48  Identities=27%  Similarity=0.444  Sum_probs=40.0

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||++||++-..  ..+...++++++.++++|+.+||.|.++|+.+
T Consensus       217 ~~~DGIvLSgGPgdp~--~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a  264 (360)
T PRK12564        217 LNPDGVFLSNGPGDPA--ALDYAIEMIRELLEKKIPIFGICLGHQLLALA  264 (360)
T ss_pred             cCCCEEEEeCCCCChH--HHHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            3699999999986321  23677899999999999999999999999876

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.78  E-value=9.9e-05  Score=72.04  Aligned_cols=56  Identities=20%  Similarity=0.401  Sum_probs=46.6

Q ss_pred             CCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecHHHHHHHhCC-CCCC
Q 029299           59 PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAAD-VVKG  114 (195)
Q Consensus        59 ~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~G~~lLa~aG-lL~g  114 (195)
                      ..+|++|++|||++.           ..+..++.+.+.+++|+ ++++++.+||+|.++|.+.| ++.+
T Consensus      1078 l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297       1078 LEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred             hhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence            578999999999642           12346788999999977 78999999999999999997 7765

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=97.78  E-value=7.5e-05  Score=58.33  Aligned_cols=49  Identities=29%  Similarity=0.335  Sum_probs=35.9

Q ss_pred             CCcCEEEEcCCCChh----hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~----~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      +++|.||+||+....    .+.... ...+++++.+.++|+.+||.|.++|+++
T Consensus        35 ~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~   87 (196)
T TIGR01855        35 ELADKLILPGVGAFGAAMARLRENG-LDLFVELVVRLGKPVLGICLGMQLLFER   87 (196)
T ss_pred             ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence            469999999853321    122222 3455588889999999999999999998

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=97.77  E-value=9.5e-05  Score=64.45  Aligned_cols=50  Identities=26%  Similarity=0.466  Sum_probs=40.6

Q ss_pred             CCCcCEEEEcCCCC---hhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~---~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+++|+|++|||+-   ...+..+... +.|+++.++|++|.++|.|-++|++.
T Consensus       272 lp~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~  324 (433)
T PRK13896        272 LPDCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES  324 (433)
T ss_pred             CCCCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence            34789999999973   2335445445 89999999999999999999999985

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.76  E-value=1.9e-05  Score=60.78  Aligned_cols=60  Identities=30%  Similarity=0.512  Sum_probs=43.0

Q ss_pred             CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCC-CeEEEecHHHHHHHhC------CCCCCceEec
Q 029299           60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA------DVVKGRKCTA  119 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~-k~i~aic~G~~lLa~a------GlL~g~~~T~  119 (195)
                      .+.|.||+|||...  ..+.....+.+-|+++.+.| +||.+.|.|..+||+.      ..|....+|+
T Consensus        32 ~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V  100 (188)
T PF01174_consen   32 EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQGQPLLGLLDITV  100 (188)
T ss_dssp             TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEECSSCCTSS--EEEEE
T ss_pred             ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhcccccccceeEEE
Confidence            46899999999764  33556678999999999998 9999999999999984      2344445554

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=97.76  E-value=5.6e-05  Score=58.73  Aligned_cols=47  Identities=21%  Similarity=0.278  Sum_probs=35.4

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+-||++...  +......+++. +++++||.+||.|.++|+.+
T Consensus        42 ~~~~~iilsgGP~~~~--~~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~   88 (191)
T PRK06774         42 LAPSHLVISPGPCTPN--EAGISLAVIRH-FADKLPILGVCLGHQALGQA   88 (191)
T ss_pred             cCCCeEEEcCCCCChH--hCCCchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            3689999999986322  22334566654 57899999999999999987

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=97.74  E-value=7.4e-05  Score=59.23  Aligned_cols=48  Identities=23%  Similarity=0.542  Sum_probs=40.0

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||+|||.||++...  +.....++++++.++++||.+||.|.++|+.+
T Consensus        45 ~~~dgliisGGp~~~~--~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a   92 (214)
T PRK07765         45 AQFDGVLLSPGPGTPE--RAGASIDMVRACAAAGTPLLGVCLGHQAIGVA   92 (214)
T ss_pred             cCCCEEEECCCCCChh--hcchHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence            4699999999986321  23456799999999999999999999999986

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.73  E-value=7.3e-05  Score=58.06  Aligned_cols=50  Identities=30%  Similarity=0.480  Sum_probs=38.7

Q ss_pred             CCcCEEEEcCCCChhh---------------hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~---------------l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+|.||+|||.....               ...+....++|+++.+.++||.+||.|.++|+.+
T Consensus        52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~  116 (189)
T cd01745          52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA  116 (189)
T ss_pred             hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence            4699999999974211               0112245789999999999999999999999876

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK00784 cobyric acid synthase; Provisional

Probab=97.73  E-value=0.0001  Score=65.33  Aligned_cols=64  Identities=16%  Similarity=0.282  Sum_probs=48.2

Q ss_pred             cCcceeeccCCCCCCCCCcCEEEEcCCCCh---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           44 RGHNFALNATFDEIDPTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        44 ~g~~i~~~~~~~~~~~~~~D~livpGG~~~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .|..+..-.+.+++  +++|.|++|||...   ..+..+..+.+.|+++.++|+++.++|.|.++|++.
T Consensus       275 ~g~~v~~~s~~~~l--~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~  341 (488)
T PRK00784        275 PGVDVRYVRPGEPL--PDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR  341 (488)
T ss_pred             CCCeEEEECCcccc--ccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence            45555544444443  58999999999742   123355668899999999999999999999999884

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=97.72  E-value=8.6e-05  Score=57.63  Aligned_cols=47  Identities=19%  Similarity=0.264  Sum_probs=36.7

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+-||++...  +.....++++++ ++++||.+||.|.++|+.+
T Consensus        42 ~~~d~iilsgGpg~p~--~~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~   88 (188)
T TIGR00566        42 LLPLLIVISPGPCTPN--EAGISLEAIRHF-AGKLPILGVCLGHQAMGQA   88 (188)
T ss_pred             cCCCEEEEcCCCCChh--hcchhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence            3589999999986432  223347888887 6799999999999999986

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=97.68  E-value=3.8e-05  Score=58.75  Aligned_cols=49  Identities=31%  Similarity=0.611  Sum_probs=42.7

Q ss_pred             CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      ++.|+||||||.+.  ..+.....+.+-|+++..+|+|+.+.|.|..+||+
T Consensus        37 ~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLak   87 (194)
T COG0311          37 EGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAK   87 (194)
T ss_pred             ccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhh
Confidence            57899999999874  33556677899999999999999999999999997

>PRK05670 anthranilate synthase component II; Provisional

Probab=97.66  E-value=0.00012  Score=56.73  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=35.2

Q ss_pred             CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++|.||+.||++...  +.....++|++ ..+++|+.+||.|.++|+.+
T Consensus        43 ~~dglIlsgGpg~~~--d~~~~~~~l~~-~~~~~PvLGIClG~Qlla~a   88 (189)
T PRK05670         43 NPDAIVLSPGPGTPA--EAGISLELIRE-FAGKVPILGVCLGHQAIGEA   88 (189)
T ss_pred             CCCEEEEcCCCCChH--HcchHHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            489999988886422  22345677776 46789999999999999986

>PHA03366 FGAM-synthase; Provisional

Probab=97.65  E-value=0.00019  Score=70.12  Aligned_cols=55  Identities=27%  Similarity=0.301  Sum_probs=47.0

Q ss_pred             CCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecH-HHHHHHhCCCCC
Q 029299           59 PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICH-GQLILAAADVVK  113 (195)
Q Consensus        59 ~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~-G~~lLa~aGlL~  113 (195)
                      .++|+.|++|||++.           ..+..++.+.+.+++|+ ++++.+.+||+ |.++|++.|++.
T Consensus      1070 l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366       1070 LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred             cccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence            578999999999753           22457889999999999 45999999999 999999999994

>PRK05665 amidotransferase; Provisional

Probab=97.64  E-value=9.6e-05  Score=59.62  Aligned_cols=51  Identities=20%  Similarity=0.389  Sum_probs=41.7

Q ss_pred             CCCcCEEEEcCCCC-hh-hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRA-PE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~-~~-~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+||++||.||+. +. .......+.+||++.+++++++.+||-|..+||.+
T Consensus        55 ~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A  107 (240)
T PRK05665         55 DEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL  107 (240)
T ss_pred             cccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence            35799999999964 32 12233678999999999999999999999999987

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.61  E-value=9e-05  Score=59.66  Aligned_cols=51  Identities=29%  Similarity=0.554  Sum_probs=41.4

Q ss_pred             CCCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+||+|||.||+...  .......+.++|+++.++++||.+||-|..+|+.+
T Consensus        52 ~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  104 (237)
T PRK09065         52 PDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA  104 (237)
T ss_pred             hhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence            3579999999997531  12223567999999999999999999999999987

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.59  E-value=0.00025  Score=63.41  Aligned_cols=50  Identities=22%  Similarity=0.387  Sum_probs=39.3

Q ss_pred             CCcCEEEEcCCCChhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+||+.....   ......+.+.|+++.+.++|+.+||.|.++|+++
T Consensus        43 ~~~D~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~   95 (538)
T PLN02617         43 LNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES   95 (538)
T ss_pred             ccCCEEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            5799999999654321   1223347888999999999999999999999974

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.59  E-value=0.00011  Score=57.55  Aligned_cols=50  Identities=16%  Similarity=0.285  Sum_probs=38.8

Q ss_pred             CCcCEEEEcCCCChhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+||+.....   ......+.++|+++.+.++|+.+||.|..+|+.+
T Consensus        36 ~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~   88 (199)
T PRK13181         36 AGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES   88 (199)
T ss_pred             ccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence            4689999999643211   1122346788999999999999999999999997

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.58  E-value=0.00016  Score=56.55  Aligned_cols=47  Identities=23%  Similarity=0.417  Sum_probs=31.8

Q ss_pred             CCcCEEEEcCCCCh-hh--hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP-EY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~-~~--l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+||.-.+ ..  ......+.+.|++   .++||.+||.|..+|+++
T Consensus        37 ~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~   86 (196)
T PRK13170         37 LAADKLFLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQLLGER   86 (196)
T ss_pred             CCCCEEEECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence            46899999994332 11  1112234555554   489999999999999987

>PRK05637 anthranilate synthase component II; Provisional

Probab=97.57  E-value=0.0002  Score=56.60  Aligned_cols=47  Identities=15%  Similarity=0.208  Sum_probs=34.7

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..||.||+-||++...  +.....+++++.. .++||.+||.|.++|+.+
T Consensus        43 ~~~~~iIlsgGPg~~~--d~~~~~~li~~~~-~~~PiLGIClG~Qlla~a   89 (208)
T PRK05637         43 ANPDLICLSPGPGHPR--DAGNMMALIDRTL-GQIPLLGICLGFQALLEH   89 (208)
T ss_pred             cCCCEEEEeCCCCCHH--HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence            4689999988887432  1223456665543 589999999999999987

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=97.56  E-value=0.00015  Score=56.08  Aligned_cols=49  Identities=37%  Similarity=0.660  Sum_probs=42.0

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+||.+||+||++...  +.....++++++.++++|+.+||.|.++|+.+
T Consensus        40 ~~~~d~iii~Gg~~~~~--d~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~   88 (192)
T PF00117_consen   40 LDDYDGIIISGGPGSPY--DIEGLIELIREARERKIPILGICLGHQILAHA   88 (192)
T ss_dssp             TTTSSEEEEECESSSTT--SHHHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred             hcCCCEEEECCcCCccc--cccccccccccccccceEEEEEeehhhhhHHh
Confidence            36899999999987532  25778899999999999999999999999986

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.56  E-value=0.00034  Score=54.82  Aligned_cols=50  Identities=22%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             CCcCEEEEcCCCChhh---hccChHHHHHHHHH-HhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKF-SNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~---l~~~~~l~~~l~~~-~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+||+..+..   ......+...|+++ .++++|+.+||.|.++|+.+
T Consensus        36 ~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         36 QKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLER   89 (201)
T ss_pred             cCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence            4689999999765321   11111244555554 58899999999999999987

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=97.52  E-value=0.00024  Score=55.69  Aligned_cols=57  Identities=30%  Similarity=0.468  Sum_probs=44.6

Q ss_pred             CCCCCCCCCcCEEEEcCCCChhhhcc--ChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           53 TFDEIDPTKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        53 ~~~~~~~~~~D~livpGG~~~~~l~~--~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      +.......++|++||.||+..-+...  .+...++|++....+++|.+||.|.++||.+
T Consensus        37 ~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~   95 (198)
T COG0518          37 DAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA   95 (198)
T ss_pred             CcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence            34444445679999999984322223  6789999999999999999999999999986

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=97.52  E-value=0.00024  Score=60.54  Aligned_cols=46  Identities=28%  Similarity=0.472  Sum_probs=37.7

Q ss_pred             CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+|.||+.||++-..  ......++++++.+ ++|+.+||.|.++|+.+
T Consensus       214 ~pDGIiLSgGPgdp~--~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a  259 (358)
T TIGR01368       214 NPDGIFLSNGPGDPA--AVEPAIETIRKLLE-KIPIFGICLGHQLLALA  259 (358)
T ss_pred             CCCEEEECCCCCCHH--HHHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence            469999999986421  24567788888887 99999999999999976

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=97.50  E-value=0.00035  Score=59.93  Aligned_cols=48  Identities=27%  Similarity=0.371  Sum_probs=38.3

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+.||+|-..  ......+.++++.+.++|+.+||.|..+|+.+
T Consensus       232 ~~~dgIilSgGPg~p~--~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a  279 (382)
T CHL00197        232 YQPDGILLSNGPGDPS--AIHYGIKTVKKLLKYNIPIFGICMGHQILSLA  279 (382)
T ss_pred             cCCCEEEEcCCCCChh--HHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence            4789999999987432  23456677788877789999999999999976

>CHL00101 trpG anthranilate synthase component 2

Probab=97.49  E-value=0.00021  Score=55.52  Aligned_cols=47  Identities=13%  Similarity=0.077  Sum_probs=34.9

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+|||-||++...  +.. +...+.+..++++|+.+||-|.++|+.+
T Consensus        42 ~~~dgiiisgGpg~~~--~~~-~~~~i~~~~~~~~PiLGIClG~Qlla~~   88 (190)
T CHL00101         42 LNIRHIIISPGPGHPR--DSG-ISLDVISSYAPYIPILGVCLGHQSIGYL   88 (190)
T ss_pred             CCCCEEEECCCCCChH--HCc-chHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence            4689999999987432  122 2333445577899999999999999986

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=97.49  E-value=0.00026  Score=60.16  Aligned_cols=47  Identities=26%  Similarity=0.408  Sum_probs=37.8

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||++||++...  +.....++++++.++ +|+.+||.|.++|+.+
T Consensus       207 ~~~DGIiLsgGPgdp~--~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a  253 (354)
T PRK12838        207 LNPDGIVLSNGPGDPK--ELQPYLPEIKKLISS-YPILGICLGHQLIALA  253 (354)
T ss_pred             cCCCEEEEcCCCCChH--HhHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence            4689999999986321  234567888888877 9999999999999976

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=97.49  E-value=0.0004  Score=53.52  Aligned_cols=47  Identities=19%  Similarity=0.208  Sum_probs=35.3

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+||+.||.+...  ++. ....+++...+++|+.+||.|..+|+.+
T Consensus        41 ~~~dgvil~gG~~~~~--~~~-~~~~i~~~~~~~~PvlGIC~G~Qlla~~   87 (184)
T cd01743          41 LNPDAIVISPGPGHPE--DAG-ISLEIIRALAGKVPILGVCLGHQAIAEA   87 (184)
T ss_pred             cCCCEEEECCCCCCcc--cch-hHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence            5699999988776421  122 4555666667889999999999999986

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=97.44  E-value=0.00047  Score=67.02  Aligned_cols=56  Identities=20%  Similarity=0.260  Sum_probs=46.8

Q ss_pred             CCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecH-HHHHHHhCCCCCC
Q 029299           59 PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICH-GQLILAAADVVKG  114 (195)
Q Consensus        59 ~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~-G~~lLa~aGlL~g  114 (195)
                      .++|+.|++|||++.           ..+..++.+.+.+++|+ +.++.+.+||+ |.++|.+.|++..
T Consensus       971 l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739       971 LDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred             hhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence            358999999999652           22456889999999999 55999999999 9999999999853

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=97.44  E-value=0.00031  Score=54.90  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+||+-||++...  +.......++. +++++|+.+||-|.++|+.+
T Consensus        42 ~~~d~iIlsgGP~~p~--~~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~   88 (195)
T PRK07649         42 MKPDFLMISPGPCSPN--EAGISMEVIRY-FAGKIPIFGVCLGHQSIAQV   88 (195)
T ss_pred             CCCCEEEECCCCCChH--hCCCchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            4689999999986422  12335566664 45789999999999999986

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.43  E-value=0.00032  Score=55.42  Aligned_cols=51  Identities=22%  Similarity=0.271  Sum_probs=36.0

Q ss_pred             CCcCEEEEcCCCChh----hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299           60 TKYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  110 (195)
Q Consensus        60 ~~~D~livpGG~~~~----~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG  110 (195)
                      +++|.|||||+....    .+........+++...+.++|+.+||.|..+|++++
T Consensus        40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~   94 (209)
T PRK13146         40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG   94 (209)
T ss_pred             cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence            689999999974321    122222233445555678999999999999999984

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=97.43  E-value=0.00019  Score=55.83  Aligned_cols=50  Identities=28%  Similarity=0.454  Sum_probs=40.2

Q ss_pred             CCcCEEEEcC-CCC--hhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPG-GRA--PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpG-G~~--~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ...|.||+|| |.-  +........+.+.|++....+||+.+||-|.++|.+.
T Consensus        38 ~~AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~   90 (204)
T COG0118          38 LKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFER   90 (204)
T ss_pred             hhCCEEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhc
Confidence            5799999999 432  2222344589999999999999999999999999876

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=97.43  E-value=0.00038  Score=54.19  Aligned_cols=46  Identities=17%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++|.+++-||++-..  ++.....+++. .++++|+.|||.|.++|+.+
T Consensus        43 ~~~~iilsgGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a   88 (193)
T PRK08857         43 NPTHLVISPGPCTPN--EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV   88 (193)
T ss_pred             CCCEEEEeCCCCChH--HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            579999988875321  23334567765 57899999999999999986

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.40  E-value=0.00035  Score=54.43  Aligned_cols=48  Identities=17%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CCcCEEEEcCCCChh---hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~---~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+||+-.+.   .......+.+.|++  +.++|+.+||.|.++|++.
T Consensus        36 ~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~   86 (192)
T PRK13142         36 DQAETIILPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEH   86 (192)
T ss_pred             ccCCEEEECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhh
Confidence            468999999984421   11223346778877  5699999999999999876

>PRK00758 GMP synthase subunit A; Validated

Probab=97.38  E-value=0.00033  Score=54.03  Aligned_cols=44  Identities=27%  Similarity=0.556  Sum_probs=33.5

Q ss_pred             CCc-CEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKY-DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~-D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++ |+||++||+...   ....+.++|+   +.++|+.+||.|.++|+.+
T Consensus        39 ~~~~dgivi~Gg~~~~---~~~~~~~~l~---~~~~PilGIC~G~Q~L~~a   83 (184)
T PRK00758         39 KAFEDGLILSGGPDIE---RAGNCPEYLK---ELDVPILGICLGHQLIAKA   83 (184)
T ss_pred             hhcCCEEEECCCCChh---hccccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence            346 999999997432   2234556666   4589999999999999987

>PLN02335 anthranilate synthase

Probab=97.32  E-value=0.00054  Score=54.62  Aligned_cols=47  Identities=15%  Similarity=0.211  Sum_probs=34.0

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+|||-||++...  +.....+++++ ...++|+.+||.|..+|+.+
T Consensus        61 ~~~d~iVisgGPg~p~--d~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a  107 (222)
T PLN02335         61 KNPRGVLISPGPGTPQ--DSGISLQTVLE-LGPLVPLFGVCMGLQCIGEA  107 (222)
T ss_pred             cCCCEEEEcCCCCChh--hccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence            3589999999987432  12233555554 45679999999999999975

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.31  E-value=0.00032  Score=55.45  Aligned_cols=49  Identities=29%  Similarity=0.434  Sum_probs=39.7

Q ss_pred             CCcCEEEEcCCCCh----hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~----~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+||+...    ..+ ....+...|+++.++++|+.+||.|..+|+++
T Consensus        36 ~~~d~iIlPG~g~~~~~~~~l-~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~   88 (210)
T PRK14004         36 ENSKALILPGDGHFDKAMENL-NSTGLRSTIDKHVESGKPLFGICIGFQILFES   88 (210)
T ss_pred             ccCCEEEECCCCchHHHHHHH-HHcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence            47899999998532    223 23458899999999999999999999999985

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.18  E-value=0.00037  Score=49.72  Aligned_cols=45  Identities=29%  Similarity=0.484  Sum_probs=35.2

Q ss_pred             CCcCEEEEcCCCCh---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHH
Q 029299           60 TKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  106 (195)
Q Consensus        60 ~~~D~livpGG~~~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lL  106 (195)
                      .++|.||+|||...   ..+ .... .+.|+++.++++++.+||.|+.+.
T Consensus        43 ~~ad~lVlPGGa~~~~~~~L-~~~g-~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          43 SKTALLVVPGGADLPYCRAL-NGKG-NRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             hCCCEEEECCCChHHHHHHH-HhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence            47999999997542   223 2333 888999999999999999999865

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PRK07567 glutamine amidotransferase; Provisional

Probab=97.15  E-value=0.00066  Score=54.83  Aligned_cols=51  Identities=14%  Similarity=0.195  Sum_probs=36.4

Q ss_pred             CCCcCEEEEcCCCChh-hh--ccCh-------HHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPE-YL--AMND-------SVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~-~l--~~~~-------~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++||+|||.||.... +.  ...+       .+.++++...++++||.+||.|.++|+.+
T Consensus        49 ~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a  109 (242)
T PRK07567         49 LDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH  109 (242)
T ss_pred             HhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence            4679999999997432 11  0122       23345555568999999999999999987

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=97.12  E-value=0.0014  Score=56.60  Aligned_cols=47  Identities=21%  Similarity=0.387  Sum_probs=37.1

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+-||+|-..  ..+...+.+++.. .++||.+||.|.++|+.+
T Consensus       280 ~~pDGIiLSnGPGDP~--~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~A  326 (415)
T PLN02771        280 MKPDGVLFSNGPGDPS--AVPYAVETVKELL-GKVPVFGICMGHQLLGQA  326 (415)
T ss_pred             cCCCEEEEcCCCCChh--HhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence            4699999999986332  3455677777766 478999999999999986

>PRK13566 anthranilate synthase; Provisional

Probab=97.12  E-value=0.0013  Score=60.98  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=39.1

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+.||++...   +..+.++|++..++++||.+||.|.++|+.+
T Consensus       568 ~~~DgVVLsgGpgsp~---d~~~~~lI~~a~~~~iPILGIClG~QlLa~a  614 (720)
T PRK13566        568 VNPDLVVLSPGPGRPS---DFDCKATIDAALARNLPIFGVCLGLQAIVEA  614 (720)
T ss_pred             cCCCEEEECCCCCChh---hCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence            5789999988876421   2346899999999999999999999999987

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=97.07  E-value=0.0012  Score=53.06  Aligned_cols=48  Identities=19%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..++|.||++||++...   ......+++...++++|+.+||.|.++|+.+
T Consensus        53 l~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~  100 (235)
T cd01746          53 LKGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVIE  100 (235)
T ss_pred             hccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHHH
Confidence            35799999999986543   3456778999999999999999999988654

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.03  E-value=0.002  Score=49.81  Aligned_cols=58  Identities=24%  Similarity=0.433  Sum_probs=44.9

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC---------CCCCCceEec
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRKCTA  119 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a---------GlL~g~~~T~  119 (195)
                      ..++|.|+|-.|+|...  +.....+.|+++ .+.+||.+||-|-+.++++         -...||.-..
T Consensus        43 ~~~pd~iviSPGPG~P~--d~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i  109 (191)
T COG0512          43 ALKPDAIVISPGPGTPK--DAGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSII  109 (191)
T ss_pred             hcCCCEEEEcCCCCChH--HcchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeee
Confidence            35689999988887543  456688889988 7789999999999999987         2566665433

>PLN02347 GMP synthetase

Probab=97.02  E-value=0.0018  Score=57.99  Aligned_cols=50  Identities=14%  Similarity=0.252  Sum_probs=34.7

Q ss_pred             CCcCEEEEcCCCChhhhccChHHH-HHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~-~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+||++||++.......+.+. .+++...+.++||.|||.|.++|+.+
T Consensus        52 ~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a  102 (536)
T PLN02347         52 LNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK  102 (536)
T ss_pred             CCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence            368999999997643222233222 33344446789999999999999986

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=97.01  E-value=0.0021  Score=59.50  Aligned_cols=47  Identities=17%  Similarity=0.207  Sum_probs=38.8

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.|||-||++...   +....++|++..++++|+.+||.|.++|+++
T Consensus       558 ~~~DgLILsgGPGsp~---d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a  604 (717)
T TIGR01815       558 RRPDLVVLSPGPGRPA---DFDVAGTIDAALARGLPVFGVCLGLQGMVEA  604 (717)
T ss_pred             cCCCEEEEcCCCCCch---hcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence            4699999988876421   2345788999999999999999999999987

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=96.98  E-value=0.0013  Score=58.12  Aligned_cols=50  Identities=24%  Similarity=0.503  Sum_probs=41.4

Q ss_pred             CCCcCEEEEcCCCChh---hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           59 PTKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        59 ~~~~D~livpGG~~~~---~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      .+++|+|++|||....   .+..+..+.+.|+++.++|++|.++|.|-++|.+
T Consensus       282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~  334 (475)
T TIGR00313       282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK  334 (475)
T ss_pred             cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence            4588999999997431   2334556889999999999999999999999998

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=96.84  E-value=0.0021  Score=51.64  Aligned_cols=52  Identities=10%  Similarity=0.174  Sum_probs=41.8

Q ss_pred             CCCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299           59 PTKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  110 (195)
Q Consensus        59 ~~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG  110 (195)
                      ..+.|+|+|+||....  .......+.+.|++++++|+++++.|.|+.+++...
T Consensus        77 l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i  130 (233)
T PRK05282         77 IENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI  130 (233)
T ss_pred             HhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence            3678999999997542  233455688899999999999999999999987753

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=96.75  E-value=0.0022  Score=52.14  Aligned_cols=71  Identities=23%  Similarity=0.307  Sum_probs=47.1

Q ss_pred             ccccccCcceeeccCCCC---C--CCCCcCEEEEcCCC-Chh--hh-----------ccChHHHHHHHHHHhCCCeEEEe
Q 029299           39 TYSETRGHNFALNATFDE---I--DPTKYDGLVIPGGR-APE--YL-----------AMNDSVIDLVRKFSNSGKTIASI   99 (195)
Q Consensus        39 ~v~~~~g~~i~~~~~~~~---~--~~~~~D~livpGG~-~~~--~l-----------~~~~~l~~~l~~~~~~~k~i~ai   99 (195)
                      .+...+|..+.......+   .  -.+.+|.||++||. ...  .+           ..+....++|+.+.++++||.+|
T Consensus        34 ~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGI  113 (254)
T PRK11366         34 AIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAI  113 (254)
T ss_pred             HHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEE
Confidence            344456665554432221   1  02459999999984 321  01           11234679999999999999999


Q ss_pred             cHHHHHHHhC
Q 029299          100 CHGQLILAAA  109 (195)
Q Consensus       100 c~G~~lLa~a  109 (195)
                      |-|.++|+.+
T Consensus       114 CrG~Qllnva  123 (254)
T PRK11366        114 CRGLQELVVA  123 (254)
T ss_pred             CHhHHHHHHH
Confidence            9999999876

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=96.70  E-value=0.0035  Score=56.32  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=35.9

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+||+.||++...  ++....++++. ..+++||.+||.|.++|+.+
T Consensus        43 ~~~d~vIlsgGP~~p~--~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a   89 (534)
T PRK14607         43 LNPSHIVISPGPGRPE--EAGISVEVIRH-FSGKVPILGVCLGHQAIGYA   89 (534)
T ss_pred             cCCCEEEECCCCCChh--hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHH
Confidence            4689999999987422  22334567776 46789999999999999986

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=96.69  E-value=0.0017  Score=51.38  Aligned_cols=50  Identities=10%  Similarity=0.077  Sum_probs=40.3

Q ss_pred             CCCcCEEEEcCCCCh---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..++|+|++|||.-.   ..+ ....+.+.|++.+++|++++++|.|+.++.+.
T Consensus        78 l~~ad~I~l~GG~~~~~~~~l-~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146          78 LLEADVIYVGGGNTFNLLAQW-REHGLDAILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             HhcCCEEEECCchHHHHHHHH-HHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            368999999998532   223 33468888999999999999999999999884

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PRK06186 hypothetical protein; Validated

Probab=96.67  E-value=0.0028  Score=50.69  Aligned_cols=44  Identities=18%  Similarity=0.293  Sum_probs=37.2

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHH
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI  105 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~l  105 (195)
                      ..++|.|+||||+|.+   .-+--+..++.+.++++|+.+||-|.++
T Consensus        51 l~~~dgilvpgGfg~r---g~~Gki~ai~~Are~~iP~LGIClGmQ~   94 (229)
T PRK06186         51 LAGFDGIWCVPGSPYR---NDDGALTAIRFARENGIPFLGTCGGFQH   94 (229)
T ss_pred             HhhCCeeEeCCCCCcc---cHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence            4678999999998854   3445678899999999999999999995

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=96.55  E-value=0.0065  Score=51.20  Aligned_cols=57  Identities=26%  Similarity=0.417  Sum_probs=45.1

Q ss_pred             ccCCCCCCCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           51 NATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        51 ~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      +.+.+++-.-++|.||+--|+|-.  ..-+..++.+++.....+|+.+||.|-++||.|
T Consensus       210 ~t~~eeIl~~~pDGiflSNGPGDP--~~~~~~i~~ik~l~~~~iPifGICLGHQllalA  266 (368)
T COG0505         210 DTSAEEILALNPDGIFLSNGPGDP--APLDYAIETIKELLGTKIPIFGICLGHQLLALA  266 (368)
T ss_pred             CCCHHHHHhhCCCEEEEeCCCCCh--hHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence            334444333579999999888743  245678999999999999999999999999987

>PRK05380 pyrG CTP synthetase; Validated

Probab=96.51  E-value=0.0046  Score=55.04  Aligned_cols=47  Identities=21%  Similarity=0.342  Sum_probs=39.0

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      ...+|.|++|||+|...   .+....+++.+.++++|+.+||.|.++++-
T Consensus       341 L~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v  387 (533)
T PRK05380        341 LKGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVI  387 (533)
T ss_pred             hhcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence            45799999999987643   334678889999999999999999998764

>PRK00074 guaA GMP synthase; Reviewed

Probab=96.26  E-value=0.0085  Score=53.55  Aligned_cols=46  Identities=22%  Similarity=0.389  Sum_probs=32.8

Q ss_pred             CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++|+||++||+....-...+.+   .+...+.++||.|||.|.++|+.+
T Consensus        46 ~~dgIIlsGGp~sv~~~~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~   91 (511)
T PRK00074         46 NPKGIILSGGPASVYEEGAPRA---DPEIFELGVPVLGICYGMQLMAHQ   91 (511)
T ss_pred             CCCEEEECCCCcccccCCCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence            5699999999753211122223   344566899999999999999986

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=96.22  E-value=0.0049  Score=54.48  Aligned_cols=45  Identities=36%  Similarity=0.597  Sum_probs=33.7

Q ss_pred             CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+||+|||.-.  ..+  ...+.+.|+++   |+||.+||.|.++|++.
T Consensus        35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~   81 (476)
T PRK06278         35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK   81 (476)
T ss_pred             ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence            57999999998421  112  23455666655   99999999999999987

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=96.18  E-value=0.0093  Score=53.53  Aligned_cols=46  Identities=15%  Similarity=0.112  Sum_probs=32.7

Q ss_pred             CCcCEEEEcCCCChh-hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~-~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+-||++.. +....+    ++.+....++||.+||.|.++|+.+
T Consensus        47 ~~~~~IIlSpGPg~p~d~~~~~----~i~~~~~~~iPILGIClG~QlLa~a   93 (531)
T PRK09522         47 MSNPVLMLSPGPGVPSEAGCMP----ELLTRLRGKLPIIGICLGHQAIVEA   93 (531)
T ss_pred             cCcCEEEEcCCCCChhhCCCCH----HHHHHHhcCCCEEEEcHHHHHHHHh
Confidence            357899999998743 222222    2333345689999999999999987

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=96.13  E-value=0.01  Score=47.47  Aligned_cols=67  Identities=25%  Similarity=0.416  Sum_probs=47.7

Q ss_pred             cccCcceeeccCCCCC-----CCCCcCEEEEcCCCC--hh-------------hhccChHHHHHHHHHHhCCCeEEEecH
Q 029299           42 ETRGHNFALNATFDEI-----DPTKYDGLVIPGGRA--PE-------------YLAMNDSVIDLVRKFSNSGKTIASICH  101 (195)
Q Consensus        42 ~~~g~~i~~~~~~~~~-----~~~~~D~livpGG~~--~~-------------~l~~~~~l~~~l~~~~~~~k~i~aic~  101 (195)
                      ..+|..+..+ .+.+-     -.+..|.|+++||..  +.             +..+|.--+.+||++.++++||.+||-
T Consensus        37 ~aGg~pillP-~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICR  115 (243)
T COG2071          37 KAGGIPILLP-ALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICR  115 (243)
T ss_pred             HcCCceEEec-CCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEcc
Confidence            3567776655 33221     135689999999932  21             122455678999999999999999999


Q ss_pred             HHHHHHhC
Q 029299          102 GQLILAAA  109 (195)
Q Consensus       102 G~~lLa~a  109 (195)
                      |.++|.-+
T Consensus       116 G~QllNVa  123 (243)
T COG2071         116 GLQLLNVA  123 (243)
T ss_pred             chHHHHHH
Confidence            99998764

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=96.13  E-value=0.0052  Score=46.53  Aligned_cols=50  Identities=26%  Similarity=0.494  Sum_probs=39.9

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCC-CeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~-k~i~aic~G~~lLa~a  109 (195)
                      .+.|+||||||....  .+.+-..|..-|-++..++ +++.+.|.|..+|.+.
T Consensus        55 aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q  107 (226)
T KOG3210|consen   55 AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ  107 (226)
T ss_pred             hhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence            578999999997642  2344455888888988887 9999999999988764

>PLN02327 CTP synthase

Probab=95.91  E-value=0.015  Score=52.02  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=36.7

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      ..++|.|++|||+|....   ......++.+.++++|+.+||.|.++++-
T Consensus       360 L~~~DGIvvpGGfG~~~~---~G~i~ai~~are~~iP~LGIClGmQl~vi  406 (557)
T PLN02327        360 LKGADGILVPGGFGDRGV---EGKILAAKYARENKVPYLGICLGMQIAVI  406 (557)
T ss_pred             hccCCEEEeCCCCCCccc---ccHHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence            467999999999875432   23456677788899999999999998754

>TIGR00337 PyrG CTP synthase

Probab=95.89  E-value=0.014  Score=51.90  Aligned_cols=46  Identities=20%  Similarity=0.356  Sum_probs=36.6

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      .++|.|++|||+|...   .......++.+.+++.|+.+||.|.++++.
T Consensus       342 ~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~i  387 (525)
T TIGR00337       342 KGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAVI  387 (525)
T ss_pred             cCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence            4689999999987543   233456778888899999999999988754

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=95.54  E-value=0.026  Score=46.40  Aligned_cols=50  Identities=16%  Similarity=0.299  Sum_probs=32.3

Q ss_pred             CCcCEEEEcCCC-ChhhhccChHHHHHHHHH---HhCC--CeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKF---SNSG--KTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~-~~~~l~~~~~l~~~l~~~---~~~~--k~i~aic~G~~lLa~a  109 (195)
                      ..+|.|++|||. ........+....+++.+   .++|  .||.++|.|..+|+.+
T Consensus        53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~  108 (273)
T cd01747          53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYL  108 (273)
T ss_pred             hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH
Confidence            568999999985 222111223334444444   4444  7999999999998873

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=95.18  E-value=0.015  Score=46.19  Aligned_cols=55  Identities=44%  Similarity=0.773  Sum_probs=43.7

Q ss_pred             eCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC
Q 029299           17 ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR   71 (195)
Q Consensus        17 ~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~   71 (195)
                      ++|+.+.++.|......+++++.+.++-|.+......|+++..+.||.|++|||.
T Consensus       193 v~~~~~~~e~~a~~~~~~~~~~v~~~~~g~~~~~~~~~dd~~~~syD~ivlPgg~  247 (247)
T KOG2764|consen  193 VAPEKKAGEACATADHDLEGRQVPVEKVGHNFAKTVAWDDAAVSSYDLIVLPGGR  247 (247)
T ss_pred             cCCCchhcceecceehhhhcCcceeeccccceEEEEEehhhhcccccEEEecCCC
Confidence            6666666666666555566778888888888888888999988999999999983

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.17  E-value=0.029  Score=44.48  Aligned_cols=50  Identities=32%  Similarity=0.560  Sum_probs=31.5

Q ss_pred             CCcCEEEEcCCC-Ch--hhh-------------ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGR-AP--EYL-------------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~-~~--~~l-------------~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      +..|.|++|||. ..  ..+             .++.--+.+++.+.++++||.+||-|..+|.-+
T Consensus        57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~  122 (217)
T PF07722_consen   57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVA  122 (217)
T ss_dssp             HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHH
T ss_pred             hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHH
Confidence            468999999997 32  111             122234677788888999999999999998653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=95.16  E-value=0.06  Score=50.82  Aligned_cols=48  Identities=29%  Similarity=0.513  Sum_probs=40.1

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||.||+..|+|-..  ..+.+.+-+++....++||.+||.|-++||.+
T Consensus       209 ~~yDGlflSNGPGdPe--~~~~~v~~vr~lL~~~~PvfGIClGHQllA~A  256 (1435)
T KOG0370|consen  209 EEYDGLFLSNGPGDPE--LCPLLVQNVRELLESNVPVFGICLGHQLLALA  256 (1435)
T ss_pred             cccceEEEeCCCCCch--hhHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence            4899999999988543  25667777888887789999999999999986

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=95.10  E-value=0.035  Score=47.52  Aligned_cols=49  Identities=29%  Similarity=0.501  Sum_probs=38.8

Q ss_pred             CCcCEEEEcCCCChhhh-ccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           60 TKYDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l-~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      ..++++|+|||...... .-+..-.+.||++.++|+...+||.|+.+-.+
T Consensus        48 ~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   48 SKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             cCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence            46899999999764321 12556688999999999999999999987664

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=94.74  E-value=0.055  Score=50.56  Aligned_cols=47  Identities=19%  Similarity=0.323  Sum_probs=34.1

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhC----CCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS----GKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~----~k~i~aic~G~~lLa~a  109 (195)
                      .+||+|||.||+|...   ++.-..++++..+.    ++||.|||.|.++|+.+
T Consensus        52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a  102 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA  102 (742)
T ss_pred             cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence            5799999999987532   22223445555543    59999999999999986

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=94.72  E-value=0.069  Score=46.98  Aligned_cols=42  Identities=24%  Similarity=0.428  Sum_probs=35.1

Q ss_pred             cCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHH
Q 029299           62 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  106 (195)
Q Consensus        62 ~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lL  106 (195)
                      +|.++||||+|.+.   -+--+..++.+.+++.|..+||.|.++.
T Consensus       344 ~dgIlVPGGFG~RG---~eGkI~Ai~yAREn~iP~lGIClGmQ~a  385 (533)
T COG0504         344 VDGILVPGGFGYRG---VEGKIAAIRYARENNIPFLGICLGMQLA  385 (533)
T ss_pred             CCEEEeCCCCCcCc---hHHHHHHHHHHHhcCCCEEEEchhHHHH
Confidence            89999999998643   3445677888888999999999999875

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=94.68  E-value=0.067  Score=44.61  Aligned_cols=56  Identities=20%  Similarity=0.295  Sum_probs=37.2

Q ss_pred             CCCCCCCCcCEEEEcCCCCh-hhhcc---ChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           54 FDEIDPTKYDGLVIPGGRAP-EYLAM---NDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        54 ~~~~~~~~~D~livpGG~~~-~~l~~---~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++++...+||++||-|.+.- ..+.+   =+++.++++...++.+++.+||-|.++++.+
T Consensus        92 ~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a  151 (302)
T PRK05368         92 FEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH  151 (302)
T ss_pred             HHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            44455578999999998632 11111   1234444444445689999999999998865

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=94.64  E-value=0.066  Score=50.86  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             CCcCEEEEcCCCChhh-hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~-l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..||.|||-+|+|... ..+.....++|.+.  .+.||.+||.|.+.|+.+
T Consensus       130 ~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~  178 (918)
T PLN02889        130 KAFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV  178 (918)
T ss_pred             cCCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence            4689999999988432 11112235555543  479999999999999886

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=94.60  E-value=0.12  Score=41.06  Aligned_cols=51  Identities=20%  Similarity=0.345  Sum_probs=41.2

Q ss_pred             CCCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+.|+|++.||.-..  .......+.+.|++.+++|.++++...|+.++...
T Consensus        81 l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145          81 LRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence            3578999999997532  23355678899999999999999999999998654

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=94.38  E-value=0.057  Score=42.44  Aligned_cols=51  Identities=18%  Similarity=0.334  Sum_probs=38.2

Q ss_pred             CCCcCEEEEcCCCChhh--hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~--l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+.|+|+++||.-...  ......+.+.|++.+++|+++++.|.|+.++...
T Consensus        78 l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129          78 LLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             HhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence            46789999999975321  2233346666666677999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=94.37  E-value=0.054  Score=42.86  Aligned_cols=50  Identities=22%  Similarity=0.371  Sum_probs=38.5

Q ss_pred             CCcCEEEEcCCCChh-hh-ccC-hHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE-YL-AMN-DSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~-~l-~~~-~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      +.||++++.||..-. .+ .++ ..-..-|+.....++|+.+||.|..+|..-
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y  103 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY  103 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence            589999998886532 22 122 445678899999999999999999999764

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.09  E-value=0.036  Score=41.40  Aligned_cols=50  Identities=18%  Similarity=0.302  Sum_probs=37.6

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+.|+|++.||.-..  .......+.+.|++.+++|+++++...|+.++...
T Consensus        34 ~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~   85 (154)
T PF03575_consen   34 READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMILGPS   85 (154)
T ss_dssp             HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHCTSSB
T ss_pred             HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhhccCc
Confidence            468999999997432  12345669999999999999999999999987554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=93.58  E-value=0.16  Score=42.82  Aligned_cols=50  Identities=30%  Similarity=0.491  Sum_probs=40.0

Q ss_pred             CCcCEEEEcC-C-CCh-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPG-G-RAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpG-G-~~~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ...|-||+|| | +|+ .+.....-..+-|++....|||+.+||-|-..|-..
T Consensus        38 ~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~g   90 (541)
T KOG0623|consen   38 LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFDG   90 (541)
T ss_pred             ccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhcc
Confidence            4678999998 4 343 334467778899999999999999999999988654

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=93.21  E-value=0.11  Score=40.60  Aligned_cols=52  Identities=33%  Similarity=0.539  Sum_probs=39.9

Q ss_pred             CCCCcCEEEEcCCCC-h-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           58 DPTKYDGLVIPGGRA-P-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        58 ~~~~~D~livpGG~~-~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      +.+.||.++|.|... + .+...--.|..++++.....+.|++||-|-.++|++
T Consensus        56 Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara  109 (245)
T KOG3179|consen   56 DLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA  109 (245)
T ss_pred             hhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence            356799999998753 2 111122467788888888899999999999999987

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=92.50  E-value=0.25  Score=43.10  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=34.4

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHH
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  106 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lL  106 (195)
                      ...|.|+||||+|.+-   -+-.+...+.+.+++.|..+||.|.++.
T Consensus       362 ~~adGilvPGGFG~RG---veG~i~Aak~ARen~iP~LGiCLGmQ~A  405 (585)
T KOG2387|consen  362 KSADGILVPGGFGDRG---VEGKILAAKWARENKIPFLGICLGMQLA  405 (585)
T ss_pred             ccCCeEEeCCcccccc---hhHHHHHHHHHHhcCCCeEeeehhhhHH
Confidence            3479999999998753   2334556677778999999999999874

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=91.97  E-value=0.15  Score=39.25  Aligned_cols=56  Identities=18%  Similarity=0.324  Sum_probs=38.7

Q ss_pred             CCCCCCCCCcCEEEEcCCCCh-hhh---ccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           53 TFDEIDPTKYDGLVIPGGRAP-EYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        53 ~~~~~~~~~~D~livpGG~~~-~~l---~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      +++++....||++||-|.+-- ..+   ..-+++.+.+....++.+.+..+|-|++..+.
T Consensus        54 ~~~~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~  113 (175)
T cd03131          54 TFDDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALY  113 (175)
T ss_pred             CHHHccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            455666688999999998631 111   11235666666666888999999999998544

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>TIGR02069 cyanophycinase cyanophycinase

Probab=91.49  E-value=0.3  Score=39.61  Aligned_cols=50  Identities=18%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             CCCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           59 PTKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        59 ~~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      ..+.|+|++.||.-..  .......+.+.|++.+++|.++++...|+.++..
T Consensus        80 l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~  131 (250)
T TIGR02069        80 LSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSD  131 (250)
T ss_pred             HhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence            3578999999997432  2335667889999999999999999999997754

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=91.33  E-value=0.19  Score=39.66  Aligned_cols=51  Identities=18%  Similarity=0.199  Sum_probs=40.4

Q ss_pred             CCcCEEEEcCCCChhh--hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299           60 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  110 (195)
Q Consensus        60 ~~~D~livpGG~~~~~--l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG  110 (195)
                      .+.|+|+|.||.-..-  +....-+.+.||+.+++|++.++...|+.+-...+
T Consensus        83 ~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I  135 (224)
T COG3340          83 MKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI  135 (224)
T ss_pred             hhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence            4589999999875422  33556789999999999999999999998766554

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=91.06  E-value=0.4  Score=36.17  Aligned_cols=46  Identities=24%  Similarity=0.280  Sum_probs=35.4

Q ss_pred             CCCCCcCEEEEcCCCChhhhccChHHHHHHHHHHh--CCCeEEEecHHHH
Q 029299           57 IDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL  104 (195)
Q Consensus        57 ~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~--~~k~i~aic~G~~  104 (195)
                      .+..+||+|||..  .......++.+.+||+++.+  ..+|.+.+|.+..
T Consensus        43 ~~l~~ydavVIgA--sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~   90 (175)
T COG4635          43 PALEDYDAVVIGA--SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT   90 (175)
T ss_pred             cChhhCceEEEec--chhhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence            4567899999944  33444567889999999887  5899999998654

>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain

Probab=90.82  E-value=1.5  Score=32.41  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=26.1

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEE
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIAS   98 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~a   98 (195)
                      .+|++||+|.-.     ..+++..+.|+++.++|..+.+
T Consensus        52 ~~y~~vi~P~~~-----~~~~~~~~~l~~~v~~GG~li~   85 (154)
T cd03143          52 SGYKLVVLPDLY-----LLSDATAAALRAYVENGGTLVA   85 (154)
T ss_pred             ccCCEEEECchh-----cCCHHHHHHHHHHHHCCCEEEE
Confidence            479999999853     2356888999999998775554

A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=89.77  E-value=0.85  Score=40.40  Aligned_cols=50  Identities=18%  Similarity=0.411  Sum_probs=36.5

Q ss_pred             CCcCEEEEcCCCCh-hhh--ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP-EYL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~-~~l--~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+.|++|+||.... .++  ....-+-+-|.++.+++.+|.+||.|-++|.+.
T Consensus       289 ~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~  341 (486)
T COG1492         289 RDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR  341 (486)
T ss_pred             CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence            45899999998653 221  223334456777788899999999999999875

>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3

Probab=89.60  E-value=1.1  Score=35.06  Aligned_cols=59  Identities=25%  Similarity=0.458  Sum_probs=32.3

Q ss_pred             hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHH
Q 029299            4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVI   83 (195)
Q Consensus         4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~   83 (195)
                      |..|.+.|+.+|+++++.                                    +..+|.+||+|.-.     .-+++..
T Consensus        36 y~al~~~gi~vDvv~~~~------------------------------------dL~~Ykllv~P~~~-----~l~~~~~   74 (207)
T PF08532_consen   36 YRALRELGIPVDVVSPDD------------------------------------DLSGYKLLVLPSLY-----ILSPEFA   74 (207)
T ss_dssp             HHHHHTTT--EEEE-TTS--------------------------------------TT-SEEEES--S-----C--HHH-
T ss_pred             HHHHHHcCCceEEecCcC------------------------------------CcccCcEEEEeeEE-----EEChHHH
Confidence            568889999999999852                                    12469999999843     3578888


Q ss_pred             HHHHHHHhCCC-eEEEecHHH
Q 029299           84 DLVRKFSNSGK-TIASICHGQ  103 (195)
Q Consensus        84 ~~l~~~~~~~k-~i~aic~G~  103 (195)
                      +.|+++.++|. +|++-.+|.
T Consensus        75 ~~L~~yV~~GG~li~~~~tg~   95 (207)
T PF08532_consen   75 ERLRAYVENGGTLILTPRTGV   95 (207)
T ss_dssp             --HHHHHT-SS-EEE-TTTT-
T ss_pred             HHHHHHHHCCCEEEEEcccCC
Confidence            99999999865 455544443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=87.23  E-value=1.3  Score=41.96  Aligned_cols=56  Identities=21%  Similarity=0.327  Sum_probs=41.4

Q ss_pred             CCCCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHHhCC-CeEEEecHHHHHHHhCCCC
Q 029299           57 IDPTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAADVV  112 (195)
Q Consensus        57 ~~~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~~~~-k~i~aic~G~~lLa~aGlL  112 (195)
                      ...++|-.|+.+||+.-           .....++.+..-..+|+++. ..-.+||+|..+++..|.+
T Consensus      1099 ~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i 1166 (1320)
T KOG1907|consen 1099 HHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWI 1166 (1320)
T ss_pred             eeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhccc
Confidence            34578999999999641           22446777777777777754 4566999999999998855

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
3uk7_A	396	Crystal Structure Of Arabidopsis Thaliana Dj-1d Len		5e-78
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		2e-24
3l18_A	168	Ton1285, An Intracellular Protease From Thermococcu		7e-23
1oi4_A	193	Crystal Structure Of Yhbo From Escherichia Coli Len		7e-19
2vrn_A	190	The Structure Of The Stress Response Protein Dr1199		5e-13
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		1e-11
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		2e-08
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		1e-05
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		2e-05
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		2e-04
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		2e-04
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		3e-04
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		3e-04

>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d Length = 396

Iteration: 1
 Score =  286 bits (732), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 136/184 (73%), Positives = 155/184 (84%)
Query: 2   VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 61
           VPFQAL AFG++V   CPGKK+GD CPTAVH   GHQTY E+RGHNF LNATFDE+D +K
Sbjct: 30  VPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK 89
Query: 62  YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP 121
           YDGLVIPGGRAPEYLA+  SV++LV++FS SGK IASI HGQLILAAAD V GRKCTAY 
Sbjct: 90  YDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASIXHGQLILAAADTVNGRKCTAYA 149
Query: 122 PVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRIL 181
            V P L+AAGA W+EP T   CVVDG++IT ATYEGHPEFI+LF+KALGG ITG++KRIL
Sbjct: 150 TVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRIL 209
Query: 182 FLCG 185
           FLCG
Sbjct: 210 FLCG 213

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 17/153 (11%)
Query: 26  VCPTAVHQSTGHQTY---------SETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL 76
           + P    +  GH+ Y         +   G++  ++ TFD+++P ++D LV+PGGRAPE +
Sbjct: 17  IYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERV 76
Query: 77  AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 136
            +N+  + + RK  + GK +ASICHG  IL +A V++GRK T+YP +K   I AG  W++
Sbjct: 77  RLNEKAVSIARKXFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDXINAGVEWVD 136
Query: 137 PETMAACVVDGNIITGAT----YEGHPEFIRLF 165
            E     VVDGN ++       Y    EF++L 
Sbjct: 137 AE----VVVDGNWVSSRVPADLYAWXREFVKLL 165

>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus Onnurineus Na1 Length = 168

Iteration: 1
 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 17/153 (11%)
Query: 26  VCPTAVHQSTGHQTY--SETRG-----HNFALNA--TFDEIDPTKYDGLVIPGGRAPEYL 76
           + P    +  GH+ Y  S  RG     H +++N   TF+E+DP ++D LV+PGG+APE +
Sbjct: 19  IYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIV 78
Query: 77  AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 136
            +N+  + + R+     K +ASICHG  IL +A V+KGR+ T+   ++  +I AGA WI+
Sbjct: 79  RLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWID 138
Query: 137 PETMAACVVDGNIIT----GATYEGHPEFIRLF 165
            E     VVDGN ++    G  Y    EF++L 
Sbjct: 139 AE----VVVDGNWVSSRHPGDLYAWMREFVKLL 167

>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli Length = 193

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 11/126 (8%)
Query: 50  LNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109
           ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L +A
Sbjct: 75  IDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134
Query: 110 DVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEGHPEFIRLF 165
           DV++GRK TA   VKP++I    AGA + + E     VVD + ++T  T +  P F R  
Sbjct: 135 DVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPAFNREA 187
Query: 166 LKALGG 171
           L+ LG 
Sbjct: 188 LRLLGA 193

>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From Deinococcus Radiodurans: A Member Of The Dj-1 Superfamily Length = 190

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 46  HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104
             + ++    E+  + YDGL++PGG   P+ L + +  +  VR   ++GK IA+I HG  
Sbjct: 60  EKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAIXHGPW 119
Query: 105 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF 161
            L+   + +G K T++  +K  L  AGA W++ E    CV D  ++T    +  P F
Sbjct: 120 SLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEE----CVTDKGVVTSRKPDDLPAF 172

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 34  STGHQTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS 92
           S  ++ Y   RG  +   + T  E   +++D +VIPGG AP+    N + +  V++    
Sbjct: 45  SRXNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTVRFVQEAXEQ 104
Query: 93  GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 151
           GK +A++ HG  +L   D+++G++ T +  +      AGA +++     A VVDGN+IT
Sbjct: 105 GKLVAAVXHGPQVLIEGDLLRGKQATGFIAISKDXXNAGADYLDE----ALVVDGNLIT 159

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 51  NATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVI--DLVRKFSNSGKTIASICHGQLILAA 108
           + +  ++   K+D +V+PGG      AM +S +  DL+R   + G  IA+IC    +LA 
Sbjct: 57  DTSLAQVASDKFDVVVLPGGLGGSN-AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115
Query: 109 ADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYE 156
             V  G+  T+YP +KP L+    S+++ +T+   V DGN+IT    G  YE
Sbjct: 116 HGVASGKSLTSYPSMKPQLV-NNYSYVDDKTV---VKDGNLITSRGPGTAYE 163

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 48  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+C G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCSGSLVLG 111
Query: 108 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 47  NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 106
              L AT    D    D + IPGG     L  +   +  +R+ +   + + S+C G L+L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVL 110
Query: 107 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
            AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 48  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVATGSLVLG 111
Query: 108 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 48  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111
Query: 108 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 48  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTGSLVLG 111
Query: 108 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 22  KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAMND 80
           + G    TA   S G+   + +RG     +A   E+   +YD +V+PGG +  E    + 
Sbjct: 27  RGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDST 86
Query: 81  SVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRKCTAYPPVK 124
            +++ V++F  SG+ +A+IC     +L   D+      T +P +K
Sbjct: 87  LLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLK 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	3e-78
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	4e-75
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	3e-64
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	1e-63
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	4e-63
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	8e-63
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	7e-39
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	9e-34
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	4e-31
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	1e-30
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	1e-29
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	6e-28
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	1e-27
2fex_A	188	Conserved hypothetical protein; structural genomic	1e-27
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	3e-27
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	2e-25
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	6e-22
1u9c_A	224	APC35852; structural genomics, protein structure i	7e-22
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	1e-21
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	3e-21
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	6e-19
3n7t_A	247	Macrophage binding protein; seattle structural gen	6e-16
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	9e-16
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	5e-14
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	4e-13
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	2e-12
3gra_A	202	Transcriptional regulator, ARAC family; transcript	1e-08
3er6_A	209	Putative transcriptional regulator protein; struct	1e-08

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  238 bits (608), Expect = 3e-78
 Identities = 138/185 (74%), Positives = 157/185 (84%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           MVPFQAL AFG++V   CPGKK+GD CPTAVH   GHQTY E+RGHNF LNATFDE+D +
Sbjct: 29  MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLS 88

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK IASICHGQLILAAAD V GRKCTAY
Sbjct: 89  KYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAY 148

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRI 180
             V P L+AAGA W+EP T   CVVDG++IT ATYEGHPEFI+LF+KALGG ITG++KRI
Sbjct: 149 ATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRI 208

Query: 181 LFLCG 185
           LFLCG
Sbjct: 209 LFLCG 213

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  230 bits (587), Expect = 4e-75
 Identities = 98/174 (56%), Positives = 126/174 (72%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
            VPFQ+L A G  VDA CP KK+GD CPTA+H   G QTYSE  GH FAL   FD++  +
Sbjct: 222 KVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSS 281

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
            YD LVIPGGRAPEYLA+N+ V+++V++F NS K +ASICHGQ ILAAA V+KGRKCTAY
Sbjct: 282 SYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAY 341

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT 174
           P VK  ++  G +W+EP+ +  C  DGN++TGA + GHPEF+   +  LG  ++
Sbjct: 342 PAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALLGIQVS 395

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  194 bits (496), Expect = 3e-64
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 20/169 (11%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           + P   +   G  V  A   +                   +   G++  ++ TF+E+DP 
Sbjct: 19  IYPLHRIKEEGHEVYVASFQRG----------------KITGKHGYSVNVDLTFEEVDPD 62

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           ++D LV+PGG+APE + +N+  + + R+     K +ASICHG  IL +A V+KGR+ T+ 
Sbjct: 63  EFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTST 122

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 169
             ++  +I AGA WI+    A  VVDGN ++         ++R F+K L
Sbjct: 123 ITIRDDVINAGAEWID----AEVVVDGNWVSSRHPGDLYAWMREFVKLL 167

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  193 bits (494), Expect = 1e-63
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 16/180 (8%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
             P  A+ A G + +               +    G           + ++    E+  +
Sbjct: 26  TSPRAAIEAAGGTTELISLEPG-------EIQSMKGDIEP----QEKYRVDHVVSEVQVS 74

Query: 61  KYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA 119
            YDGL++PGG   P+ L + +  +  VR   ++GK IA+ICHG   L+   + +G K T+
Sbjct: 75  DYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTS 134

Query: 120 YPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKR 179
           +  +K  L  AGA W++      CV D  ++T    +  P F +  ++        S ++
Sbjct: 135 WSSLKRELTLAGAQWVD----EECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSRRK 190

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  198 bits (505), Expect = 4e-63
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDP 59
           ++P   L   G  V                       + Y   RG  +   + T  E   
Sbjct: 27  IIPCNGLKQAGFEVVVLGSRMN---------------EKYKGKRGRLSTQADGTTTEAIA 71

Query: 60  TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA 119
           +++D +VIPGG AP+ +  N + +  V++    GK +A++CHG  +L   D+++G++ T 
Sbjct: 72  SEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATG 131

Query: 120 YPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITG 175
           +  +   ++ AGA +++     A VVDGN+IT         F    L  LG     
Sbjct: 132 FIAISKDMMNAGADYLD----EALVVDGNLITSREPGDLAIFTTAILSRLGYGGKD 183

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  192 bits (489), Expect = 8e-63
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 19/172 (11%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
             P       G  V                     G     +    +  ++ + DE+ P 
Sbjct: 40  TSPADEFRKAGHEVITIEKQA--------------GKTVKGKKGEASVTIDKSIDEVTPA 85

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L +ADV++GRK TA 
Sbjct: 86  EFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAV 145

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGHPEFIRLFLKALGG 171
            P+   +  AGA + + E     VVD + ++T  T +  P F R  L+ LG 
Sbjct: 146 KPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPAFNREALRLLGA 193

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  130 bits (329), Expect = 7e-39
 Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 29/177 (16%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI--D 58
               +A    G+S                        +      G    ++     +   
Sbjct: 19  FQYLEAFFENGISYKVFAVSDT---------------KEIKTNSGMVLIVDDVIANLKGH 63

Query: 59  PTKYDGLVIPGGRAP------EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV 112
             ++D LV   G A            N  ++++++ F   GK +   C G ++     + 
Sbjct: 64  EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGIT 123

Query: 113 KGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 169
           KG+K   +P  KP +    A+           +DGN  T          +   ++AL
Sbjct: 124 KGKKVAVHPLAKPAIQNGIATD------EKSEIDGNFFTAQDENTIWTMLPKVIEAL 174

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  117 bits (296), Expect = 9e-34
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 44  RGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHG 102
           R      + +  ++   K+D +V+PGG      +  +  V DL+R   + G  IA+IC  
Sbjct: 50  RDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAA 109

Query: 103 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 162
             +LA   V  G+  T+YP +KP L+   +   +       V DGN+IT        EF 
Sbjct: 110 PTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDD----KTVVKDGNLITSRGPGTAYEFA 165

Query: 163 RLFLKALGG 171
               + L G
Sbjct: 166 LKIAEELAG 174

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  111 bits (280), Expect = 4e-31
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 46  HNFALNA--TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103
               +    + DE      D L++PGG       ++  +++ + +    G  +A+IC   
Sbjct: 57  GGLRIKPDISLDECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTIVAAICGAT 115

Query: 104 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 163
             LA    +  RK T+       ++       +   +   V D N++T +      EF  
Sbjct: 116 DALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGI-APLEFAM 174

Query: 164 LFLKALGG 171
             LK +  
Sbjct: 175 EVLKKIDV 182

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  110 bits (276), Expect = 1e-30
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 44  RGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHG 102
           RG       T +      +D L +PGG    +  A + +++ L+  FS  GK +A+IC  
Sbjct: 54  RGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICAT 113

Query: 103 -QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
             L+ A      G + T +P     + +   S              +++T 
Sbjct: 114 PALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQR----VCYYATQHLLTS 160

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  107 bits (270), Expect = 1e-29
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 44  RGHNFALNATFDEIDPT-KYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICH 101
           R      +A+ ++      YD +V+PGG    + L+ + +V +++++  N    IA+IC 
Sbjct: 48  RDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICA 107

Query: 102 GQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
           G   L A ++  G K T +P  K  ++  G              DG I+T 
Sbjct: 108 GPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN---RVEKDGLILTS 155

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  103 bits (258), Expect = 6e-28
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 29  TAVHQSTGHQTYSETRGHNFALNATFDEIDPT-----KYDGLVIPGGRA-PEYLAMNDSV 82
           +        +    +R      N ++ EI        +YD  +IPGG    + L+    V
Sbjct: 36  SVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFV 95

Query: 83  IDLVRKFSNS-GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 141
             +V++F     K I  IC G  + A    +  ++ T +P V+  L   G  +++     
Sbjct: 96  QQVVKEFYKKPNKWIGMICAG-TLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD----Q 150

Query: 142 ACVVDGNIITG 152
             V++ N+IT 
Sbjct: 151 PVVLEENLITS 161

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score =  103 bits (258), Expect = 1e-27
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 16/171 (9%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNAT--FDEID 58
           ++    L    V+     P K    V      +S G            A  +    ++I 
Sbjct: 45  VLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIR 104

Query: 59  PTKYDGLVIPGGR------------APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 106
             ++D LVIPGG               E   +     + VR+F N+ K I ++C    ++
Sbjct: 105 VEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVV 164

Query: 107 AAA-DVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV-DGNIITGATY 155
            A    +   K T       ++   G   ++  T+ +       I + + Y
Sbjct: 165 VALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAY 215

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  102 bits (255), Expect = 1e-27
 Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 46  HNFALNA--TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103
               +    ++D +DP   D LVIPGG + E       +  LV++F +  + +A IC   
Sbjct: 46  GGLKVTPDTSYDALDPVDIDALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICAAA 104

Query: 104 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 163
             L    V+     T           A             V DG ++T A       F  
Sbjct: 105 SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAV 163

Query: 164 LFLKALGG 171
             LK+LG 
Sbjct: 164 EILKSLGL 171

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  101 bits (253), Expect = 3e-27
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 44  RGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHG 102
           RG     +A   E+   +YD +V+PGG    E    +  +++ V++F  SG+ +A+IC  
Sbjct: 49  RGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAA 108

Query: 103 -QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNI--ITG 152
              +L   D+      T +P +K  +      W++       V D  +  +T 
Sbjct: 109 PATVLVPHDIFPIGNMTGFPTLKDKI--PAEQWLD----KRVVWDARVKLLTS 155

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score = 96.3 bits (240), Expect = 2e-25
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 46  HNFALNA-TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104
             F  +      ++P  ++ LV+ GG    +   N  ++  V+        IA+IC    
Sbjct: 47  GGFKTSVDYIIGLEPANFNLLVMIGG--DSWSNDNKKLLHFVKTAFQKNIPIAAICGAVD 104

Query: 105 ILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGNIITGATYEGHPEF 161
            LA   ++     T                +S++E       V D N++T        EF
Sbjct: 105 FLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVE----KQAVRDKNLVTANGT-APIEF 159

Query: 162 IRLFLKALGG 171
             L L+ +  
Sbjct: 160 TNLILEMIDF 169

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score = 88.2 bits (218), Expect = 6e-22
 Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 15/170 (8%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNAT--FDEID 58
           ++   A+   G       P K+  DV      ++                       + D
Sbjct: 28  VLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQAD 87

Query: 59  PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
             + D L++PGG                  ++  +  L +    +GK +  +C    +L 
Sbjct: 88  AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLP 147

Query: 108 AADVVKGR-KCTAYPPVKPVLIAAGASWIEPETMAACV-VDGNIITGATY 155
                  R           VL   GA  +        V  D  I+T   Y
Sbjct: 148 KIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAY 197

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 87.8 bits (218), Expect = 7e-22
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 26/192 (13%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
            VP+      G  V  A    + G+V       +    +++E         A   + D  
Sbjct: 32  AVPYLVFQEKGYDVKVASI--QGGEVPLDPRSINEKDPSWAEAEAA-LKHTARLSKDDAH 88

Query: 61  KYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVK 113
            +D + +PGG    +    N+++  ++++F+  G+ IA++CHG   L  A       +VK
Sbjct: 89  GFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVK 148

Query: 114 GRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CVVDGNIITGATYEG 157
           G+  T++                 ++  L   GA+++         V DGN+ITG   + 
Sbjct: 149 GKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQS 208

Query: 158 HPEFIRLFLKAL 169
                   + AL
Sbjct: 209 SRSTAEKVVAAL 220

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 88.9 bits (220), Expect = 1e-21
 Identities = 31/209 (14%), Positives = 60/209 (28%), Gaps = 30/209 (14%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAV-HQSTGHQTYSETRGHNFALNATFDEIDP 59
           ++P   L A G   + A            A+ H+      + E     F       ++  
Sbjct: 79  LLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVA 138

Query: 60  TK-----YDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD--- 110
           +      Y  + +PGG      L  +  V   ++    + + + S+CHG     A     
Sbjct: 139 SLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGD 198

Query: 111 -VVKGRKCTAYPP-------------------VKPVLIAAGASWIEPETMAACVVDGNII 150
             + G    A+P                        L   G + I  +       D  ++
Sbjct: 199 NPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLL 258

Query: 151 TGATYEGHPEFIRLFLKALGGTITGSDKR 179
           TG +        +L  + +     G +  
Sbjct: 259 TGDSPFAANALGKLAAQEMLAAYAGLEHH 287

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score = 86.5 bits (215), Expect = 3e-21
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 52  ATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 111
               E+     D ++I  G      A+ D       K   S + I SIC G  +L    +
Sbjct: 73  GHVSEVKE--QDVVLITSGYRGIPAALQDENFMSALKLDPSRQLIGSICAGSFVLHELGL 130

Query: 112 VKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
           +KG+K T  P  K VL   G    +       V++GNI T  
Sbjct: 131 LKGKKLTTNPDAKAVLQGMGGDVQD----LPLVIEGNIATAG 168

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 80.4 bits (198), Expect = 6e-19
 Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 35/204 (17%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSG----DVCPTAVHQSTGHQTYSETRGHNFALNAT--F 54
           + PF      G  VD      K G     +    ++        ++    N  L      
Sbjct: 32  LHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTP 91

Query: 55  DEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---- 109
            E++   Y       G    +       + D+  +   +G  +A++CHG  I        
Sbjct: 92  KEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKK 151

Query: 110 ---DVVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAAC--VV 145
               +++G+  T +                     V+ V    GA ++ P        + 
Sbjct: 152 TGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSIT 211

Query: 146 DGNIITGATYEGHPEFIRLFLKAL 169
           DG ++TG             + AL
Sbjct: 212 DGRLVTGVNPASAHSTAVRSIDAL 235

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Length = 247

 Score = 72.4 bits (177), Expect = 6e-16
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 35/208 (16%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSG----DVCPTAVHQSTGHQTYSETRGHNFALNAT--- 53
           + PF  L A G  VD A      G     +    + +      +SE       +N     
Sbjct: 38  LHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFK 97

Query: 54  FDEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-- 110
             ++ P  Y  + + GG    Y       + ++ +     G  I ++CHG  +L      
Sbjct: 98  AGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDE 157

Query: 111 ----VVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAA--CVV 145
               V+K +  T +                     +  +   A A ++ PE      C V
Sbjct: 158 NGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKV 217

Query: 146 DGNIITGATYEGHPEFIRLFLKALGGTI 173
           DG I+TGA  +      R  +K   G +
Sbjct: 218 DGRIVTGANPQSATNTARDTIKVYEGIV 245

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 72.0 bits (176), Expect = 9e-16
 Identities = 35/207 (16%), Positives = 62/207 (29%), Gaps = 41/207 (19%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCP---------TAVHQSTGHQTYSETRGHNFALN 51
           +  F      G  VD       +G                      +T +       A  
Sbjct: 32  LRSFDTFEKHGFEVDFVSE---TGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARI 88

Query: 52  ATFDEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA- 109
            T +E++ + Y       G    +      ++ D+  K   +G  IA+ICHG L+     
Sbjct: 89  KTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLI 148

Query: 110 ------DVVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAAC- 143
                  +++G+  T +P                    V+ V    GA ++ P       
Sbjct: 149 DIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDY 208

Query: 144 -VVDGNIITGATYEGHPEFIRLFLKAL 169
            + DG ++TG             + AL
Sbjct: 209 SITDGKLVTGVNANSSYSTTIRAINAL 235

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 66.4 bits (163), Expect = 5e-14
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 38  QTYSETRG-----HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS 92
              S   G         +  +    D      L +PGG        +D+ I+ +      
Sbjct: 37  NFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGTREKVNDDNFINFIGNMVKE 96

Query: 93  GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
            K I S+C G  +L+ A ++ G++ T        +       +     A  V DGNI T 
Sbjct: 97  SKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNED-VLWVKEARWVKDGNIYTS 155

Query: 153 A 153
           +
Sbjct: 156 S 156

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 64.5 bits (158), Expect = 4e-13
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 48  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111

Query: 108 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
           AA +++G++ T +     +L   GA  I        V DGN++TG 
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGA--IPVH--ERVVRDGNLLTGG 153

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 52  ATFDEIDPTKYDGLVIPGGRAPEYLAMND-SVIDLVRKFSNSGKTIASICHGQLILAAAD 110
           ATF    P     L  PGG      A +D   +  +       K I S+C G LIL AA 
Sbjct: 76  ATFGTC-PRDLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAG 134

Query: 111 VVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
           ++KG K T++   +  L   GA  I  E  A  V D N ITGA
Sbjct: 135 LLKGYKATSHWSCRDALAGFGA--IPTE--ARVVRDRNRITGA 173

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 26/107 (24%)

Query: 58  DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC 117
              + D LV+ GG           +  L+   +  G  +  + +G   L  A V+    C
Sbjct: 68  ALKELDLLVVCGGLRTP--LKYPELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGC 125

Query: 118 T-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
           +             P  +          I P +     +D + ++ A
Sbjct: 126 SIHPEQRASLSERSPQTR----------ITPASF---TLDRDRLSAA 159

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 25/119 (21%)

Query: 48  FALNATFDEIDPTKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 105
            ++  T         + L+I     P      ++ ++ D +R+    G  I +I  G  +
Sbjct: 61  ISVQPTAQWQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFV 120

Query: 106 LAAADVVKGRKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153
           +A A +++  K              +P +           +  E     ++DGN+   +
Sbjct: 121 VAKAGLLQQNKAVMHSYFAHLFGELFPEIM----------LMTEQK--ALIDGNVYLSS 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.98
2fex_A	188	Conserved hypothetical protein; structural genomic	99.97
1u9c_A	224	APC35852; structural genomics, protein structure i	99.97
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.97
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.97
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.97
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	99.97
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.97
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.95
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.95
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.81
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.65
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.46
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.38
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	98.97
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.36
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.33
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	98.28
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	98.18
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.16
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	98.16
3m3p_A	250	Glutamine amido transferase; structural genomics,	98.14
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	98.14
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	98.08
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	98.07
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	97.91
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.82
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.79
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	97.78
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.76
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	97.68
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.62
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	97.51
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.5
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	97.44
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	97.4
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	97.35
3uow_A	556	GMP synthetase; structural genomics consortium, SG	97.33
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	97.18
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	97.17
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	97.04
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	96.92
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	96.86
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.85
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	96.85
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	96.83
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	96.81
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	96.24
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	96.2
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	96.13
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	95.81
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	95.69
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	94.3
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	81.54
3tty_A	675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	80.38

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=5.2e-39  Score=246.44  Aligned_cols=150  Identities=20%  Similarity=0.246  Sum_probs=142.1

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS   81 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~   81 (195)
                      .||++|+++|++|+++|+.++                +++++.|.++.+|..+++++..+||+||||||+++..+..++.
T Consensus        26 ~p~~~l~~ag~~V~~~s~~~~----------------~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~   89 (177)
T 4hcj_A           26 ESKKIFESAGYKTKVSSTFIG----------------TAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWR   89 (177)
T ss_dssp             HHHHHHHHTTCEEEEEESSSE----------------EEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHH
T ss_pred             HHHHHHHHCCCEEEEEECCCC----------------eEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHH
Confidence            699999999999999999865                5888999999999999999889999999999999888889999


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHH
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF  161 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~  161 (195)
                      +.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++.++.|.+.+    +|+|||+||++|+.++++|
T Consensus        90 ~~~~l~~~~~~~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~----vV~Dg~liTs~g~~~~~~~  165 (177)
T 4hcj_A           90 TQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSEN----VVVSGNIVTANGPTSSKDF  165 (177)
T ss_dssp             HHHHHHHHHHTTCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSS----EEEETTEEEECSGGGHHHH
T ss_pred             HHHHHHHHHHhCCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCC----EEEECCEEECCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998775    8999999999999999999


Q ss_pred             HHHHHHHHcC
Q 029299          162 IRLFLKALGG  171 (195)
Q Consensus       162 ~l~li~~l~~  171 (195)
                      ++++++.|..
T Consensus       166 a~~lve~L~s  175 (177)
T 4hcj_A          166 ANAVVGVLNS  175 (177)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998864

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=1.1e-35  Score=236.90  Aligned_cols=165  Identities=20%  Similarity=0.307  Sum_probs=147.7

Q ss_pred             chhHHHHh-CCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccCh
Q 029299            2 VPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~-~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~   80 (195)
                      .|++.|++ .|++|+++|++++                +|++++|+.+.++..++++  ++||+||||||.++..+..++
T Consensus        23 ~p~evl~~~~~~~v~~vs~~~~----------------~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~g~~~~~~~~   84 (231)
T 3noq_A           23 GPHDVLASLPDVQVHLIWKEPG----------------PVVASSGLVLQATTSFADC--PPLDVICIPGGTGVGALMEDP   84 (231)
T ss_dssp             HHHHHHTTSTTEEEEEEESSSE----------------EEECTTSCEEEECEETTTC--CCCSEEEECCSTTHHHHTTCH
T ss_pred             HHHHHHHcCCCCEEEEEECCCC----------------cEEcCCCCEEecccChhHC--CcCCEEEECCCCChhhhccCH
Confidence            58999999 8999999999875                4888899999999999986  579999999999887677899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHH
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE  160 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~  160 (195)
                      .+++||+++++++++|++||+|+++|+++|||+||++|+||...+.++++|..+++.    .+|+|||+|||+|+++++|
T Consensus        85 ~l~~~lr~~~~~g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~----~vV~Dg~iiTs~G~~a~~d  160 (231)
T 3noq_A           85 QALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHE----RVVRDGNLLTGGGITAGID  160 (231)
T ss_dssp             HHHHHHHHHHTTCSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCS----SEEEETTEEEECSTTHHHH
T ss_pred             HHHHHHHHHHhcCCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCC----cEEEeCCEEECCCHHHHHH
Confidence            999999999999999999999999999999999999999999999998888887654    4999999999999999999


Q ss_pred             HHHHHHHHHcCcc-ccc-ccceeeeccCcc
Q 029299          161 FIRLFLKALGGTI-TGS-DKRILFLCGVSF  188 (195)
Q Consensus       161 ~~l~li~~l~~~~-a~~-~~~~~~~~~~~~  188 (195)
                      |++++|+++.++. |.+ +..++|..+.+|
T Consensus       161 ~aL~li~~~~G~~~A~~va~~l~~~~~~p~  190 (231)
T 3noq_A          161 FALTLAAELFDAATAQRVQLQLEYAPAPPF  190 (231)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHTTCCCCCSS
T ss_pred             HHHHHHHHHcCHHHHHHHHHhceeCCCCCC
Confidence            9999999988876 555 777777765444

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=8.2e-36  Score=226.31  Aligned_cols=148  Identities=34%  Similarity=0.624  Sum_probs=136.5

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS   81 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~   81 (195)
                      .|++.|+++|++++++|++++                ++++++|..+.++..+++++..+||+||||||.++..+..++.
T Consensus        20 ~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~   83 (168)
T 3l18_A           20 YPLHRIKEEGHEVYVASFQRG----------------KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEK   83 (168)
T ss_dssp             HHHHHHHHTTCEEEEEESSSE----------------EEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTCHH
T ss_pred             HHHHHHHHCCCEEEEEECCCC----------------EEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccCHH
Confidence            589999999999999999875                5788999999999999998767899999999988766778999


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHH
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF  161 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~  161 (195)
                      +.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++.+..+.+.    .++.|||+|||+|+.++.+|
T Consensus        84 l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~----~~v~dg~iiT~~g~~~~~d~  159 (168)
T 3l18_A           84 AVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDA----EVVVDGNWVSSRHPGDLYAW  159 (168)
T ss_dssp             HHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCS----SCEEETTEEEECSGGGHHHH
T ss_pred             HHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecC----CEEEeCCEEEcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987777554    48999999999999999999


Q ss_pred             HHHHHHHH
Q 029299          162 IRLFLKAL  169 (195)
Q Consensus       162 ~l~li~~l  169 (195)
                      ++++|+++
T Consensus       160 ~l~li~~l  167 (168)
T 3l18_A          160 MREFVKLL  167 (168)
T ss_dssp             HHHHGGGC
T ss_pred             HHHHHHhh
Confidence            99999875

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.9e-35  Score=238.41  Aligned_cols=166  Identities=23%  Similarity=0.259  Sum_probs=147.8

Q ss_pred             chhHHH-HhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC-ChhhhccC
Q 029299            2 VPFQAL-LAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR-APEYLAMN   79 (195)
Q Consensus         2 ~p~~~l-~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~l~~~   79 (195)
                      .|++.| ++.|++|+++|++++                +|++++|+.+.++..+++++ .+||+||||||. ++..+..+
T Consensus        41 ~p~dvl~~~~~~~v~~vs~~~~----------------~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~l~~~  103 (253)
T 3ewn_A           41 GPHCMFGSLMGAKIYIVAKSLD----------------PVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLAAASD  103 (253)
T ss_dssp             HHHHHHTTSTTCEEEEEESSSS----------------CEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHHHTTC
T ss_pred             HHHHHHHhCCCCEEEEEeCCCC----------------eEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhhhccC
Confidence            589999 678999999999875                47788999999999999885 489999999998 77667789


Q ss_pred             hHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHH
Q 029299           80 DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHP  159 (195)
Q Consensus        80 ~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~  159 (195)
                      +.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.++++|..+++.    .+|+|||+|||+|+.+++
T Consensus       104 ~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~----~vV~Dg~iiTs~G~~a~i  179 (253)
T 3ewn_A          104 AETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEA----RVVRDRNRITGAGVTAGL  179 (253)
T ss_dssp             HHHHHHHHHHHTTCSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCS----SEEEETTEEEECSTTHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCC----cEEEECCEEECCCHHHHH
Confidence            9999999999999999999999999999999999999999999999998888887654    499999999999999999


Q ss_pred             HHHHHHHHHHcCcc-ccc-ccceeeeccCcc
Q 029299          160 EFIRLFLKALGGTI-TGS-DKRILFLCGVSF  188 (195)
Q Consensus       160 ~~~l~li~~l~~~~-a~~-~~~~~~~~~~~~  188 (195)
                      ||+++||+++.++. |.+ ++.++|..+-+|
T Consensus       180 dlaL~lv~~l~G~~~A~~va~~l~~~~~~pf  210 (253)
T 3ewn_A          180 DFGLSMVAELRDQTYAECAQLMSEYDPDPPF  210 (253)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHTTCCCCCSS
T ss_pred             HHHHHHHHHHcCHHHHHHHHHhcccCCCCCC
Confidence            99999999988876 555 777777765443

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=1.8e-35  Score=228.92  Aligned_cols=162  Identities=27%  Similarity=0.422  Sum_probs=140.7

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC-ChhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR-APEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~l~~~~   80 (195)
                      .|++.|+++|++++++|++++               +++++++|.++.++..+++++..+||+||||||. +...+..++
T Consensus        23 ~~~~~l~~ag~~v~~~s~~~~---------------~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~   87 (190)
T 4e08_A           23 IAADVLRRAGIKVTVAGLNGG---------------EAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESS   87 (190)
T ss_dssp             HHHHHHHHTTCEEEEEESSSS---------------SCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHHHCH
T ss_pred             HHHHHHHHCCCEEEEEECCCC---------------cceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhhhCH
Confidence            589999999999999999862               1477889999999999999877789999999995 455567899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHH
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE  160 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~  160 (195)
                      .+.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++ +..+++..   .+++|||+|||+|+.+++|
T Consensus        88 ~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~~---~~v~dg~iiTs~g~~a~~d  163 (190)
T 4e08_A           88 LVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVN-NYSYVDDK---TVVKDGNLITSRGPGTAYE  163 (190)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSS-SSEECSSC---SEEEETTEEEECSGGGHHH
T ss_pred             HHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhc-CCcccCCC---cEEEECCEEECCChHHHHH
Confidence            9999999999999999999999999999999999999999998887766 44555422   4999999999999999999


Q ss_pred             HHHHHHHHHcCcc-ccc-ccceee
Q 029299          161 FIRLFLKALGGTI-TGS-DKRILF  182 (195)
Q Consensus       161 ~~l~li~~l~~~~-a~~-~~~~~~  182 (195)
                      |++++|+++.++. |.+ ++.++|
T Consensus       164 ~al~li~~~~g~~~a~~va~~l~~  187 (190)
T 4e08_A          164 FALKIAEELAGKEKVQEVAKGLLV  187 (190)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCHHHHHHHHHhhCc
Confidence            9999999888875 555 555554

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=7.7e-35  Score=229.23  Aligned_cols=172  Identities=18%  Similarity=0.180  Sum_probs=148.1

Q ss_pred             chhHHHH--------hCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh
Q 029299            2 VPFQALL--------AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP   73 (195)
Q Consensus         2 ~p~~~l~--------~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~   73 (195)
                      .|++.|+        ++|++|+++|++++                +|++++|.++.+|..+++++..+||+||||||.+.
T Consensus        23 ~~~~~l~~a~~~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~   86 (212)
T 3efe_A           23 YLIAELNSGRYFKKDLAPLKVITVGANKE----------------MITTMGGLRIKPDISLDECTLESKDLLILPGGTTW   86 (212)
T ss_dssp             HHHHHHHHCTTSCTTCCCCCEEEEESSSC----------------CEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCT
T ss_pred             HHHHHHHhhhccccCCCCeEEEEEECCCC----------------eEEcCCCCEEecCcCHHHCCccCCCEEEECCCCcc
Confidence            5889999        88999999999875                47888999999999999987779999999999876


Q ss_pred             hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCC-CchHHHHH-CCC--eeecCCCcceEEEcCCe
Q 029299           74 EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP-PVKPVLIA-AGA--SWIEPETMAACVVDGNI  149 (195)
Q Consensus        74 ~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~-~~~~~l~~-~g~--~~~~~~~~~~~v~Dg~i  149 (195)
                      . +..++.+.+||+++++++|+|++||+|+++|+++|||+||++|+|| ...+.+++ ++.  .+.+.    .+|+|||+
T Consensus        87 ~-~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~----~~V~Dg~i  161 (212)
T 3efe_A           87 S-EEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELG----PAVSDANL  161 (212)
T ss_dssp             T-SGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCC----SEEEETTE
T ss_pred             c-cccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCC----cEEEECCE
Confidence            4 4678999999999999999999999999999999999999999997 66667755 332  33443    49999999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHcCccccc--ccceeeeccCccccccccC
Q 029299          150 ITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFCFQNLLE  195 (195)
Q Consensus       150 iT~~g~~~~~~~~l~li~~l~~~~a~~--~~~~~~~~~~~~~~~~~~~  195 (195)
                      |||+|+. ++||++++|+++.++.+.+  ....+|..|....|-++|+
T Consensus       162 iTs~G~~-~~d~al~li~~l~g~~a~~va~~~~~~~~g~~~~~~~~~~  208 (212)
T 3efe_A          162 VTASGIA-PLEFAMEVLKKIDVFTLDALHSWYNLNKTHKPEYFFQLMN  208 (212)
T ss_dssp             EEECTTC-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHCCTHHHHHHHT
T ss_pred             EECCCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            9999985 9999999999999987666  5667778888888877764

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=1e-34  Score=224.33  Aligned_cols=155  Identities=27%  Similarity=0.563  Sum_probs=136.6

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCcccccc-----ccCcceeeccCCCCCCCCCcCEEEEcCCC-Chhh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE-----TRGHNFALNATFDEIDPTKYDGLVIPGGR-APEY   75 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~-----~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~   75 (195)
                      .|++.|+++|++++++|+++++                +.+     +.|..+.++..+++++..+||+||||||. ++..
T Consensus        27 ~~~~~l~~ag~~v~~vs~~~~~----------------v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~   90 (190)
T 2vrn_A           27 SPRAAIEAAGGTTELISLEPGE----------------IQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDK   90 (190)
T ss_dssp             HHHHHHHHTTCEEEEEESSSSE----------------EEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHHHH
T ss_pred             HHHHHHHHCCCEEEEEecCCCc----------------cccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhHHH
Confidence            5899999999999999998753                444     67889999999998866789999999997 5555


Q ss_pred             hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCC
Q 029299           76 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY  155 (195)
Q Consensus        76 l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~  155 (195)
                      +..++.+.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++.+..+.+..    +++|||+|||+|+
T Consensus        91 ~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~----~v~Dg~iiTs~g~  166 (190)
T 2vrn_A           91 LRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEE----CVTDKGVVTSRKP  166 (190)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCS----CEEETTEEECSSG
T ss_pred             HhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEECCC----EEEcCCEEEcCCh
Confidence            678999999999999999999999999999999999999999999999999999888887765    5679999999999


Q ss_pred             CCHHHHHHHHHHHH-cCccccc
Q 029299          156 EGHPEFIRLFLKAL-GGTITGS  176 (195)
Q Consensus       156 ~~~~~~~l~li~~l-~~~~a~~  176 (195)
                      .++.+|++++|+++ .++.+++
T Consensus       167 ~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          167 DDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             GGHHHHHHHHHHHHHHCCCGGG
T ss_pred             hhHHHHHHHHHHHHhccccccc
Confidence            99999999999988 6665443

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=1e-34  Score=225.83  Aligned_cols=162  Identities=23%  Similarity=0.356  Sum_probs=139.8

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCC-CCCCcCEEEEcCCCC-hhhhccC
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI-DPTKYDGLVIPGGRA-PEYLAMN   79 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~-~~~~~D~livpGG~~-~~~l~~~   79 (195)
                      .|++.|+++|++++++|++++               +++.+++|.++.++.+++++ +..+||+||||||.+ +..+..+
T Consensus        21 ~~~~~l~~ag~~v~~vs~~~~---------------~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l~~~   85 (197)
T 2rk3_A           21 IPVDVMRRAGIKVTVAGLAGK---------------DPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSES   85 (197)
T ss_dssp             HHHHHHHHTTCEEEEEETTCS---------------SCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHHHHC
T ss_pred             HHHHHHHHCCCEEEEEEcCCC---------------CccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHhhhC
Confidence            589999999999999999864               14778899999999999887 668999999999974 5556789


Q ss_pred             hHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-CCeeecCCCcceEEEcCCeEeCCCCCCH
Q 029299           80 DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPETMAACVVDGNIITGATYEGH  158 (195)
Q Consensus        80 ~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g~~~~~~~~~~~~v~Dg~iiT~~g~~~~  158 (195)
                      +.+.+||+++++++|+|++||+|+++|+++|+|+||++|+||...+.+++. +..+.+.    .+++|||+|||+|+.++
T Consensus        86 ~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~----~~v~Dg~iiTs~g~~a~  161 (197)
T 2rk3_A           86 AAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN----RVEKDGLILTSRGPGTS  161 (197)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCC----SEEEETTEEEECSGGGH
T ss_pred             HHHHHHHHHHHHcCCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCC----CEEEeCCEEECCCHHHH
Confidence            999999999999999999999999999999999999999999999999864 3344333    49999999999999999


Q ss_pred             HHHHHHHHHHHcCcc-ccc-ccceee
Q 029299          159 PEFIRLFLKALGGTI-TGS-DKRILF  182 (195)
Q Consensus       159 ~~~~l~li~~l~~~~-a~~-~~~~~~  182 (195)
                      +||++++|+++.++. |.+ ++.++|
T Consensus       162 ~d~al~li~~l~g~~~a~~va~~~~~  187 (197)
T 2rk3_A          162 FEFALAIVEALNGKEVAAQVKAPLVL  187 (197)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHGGGTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence            999999999988875 444 444443

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=8e-35  Score=226.27  Aligned_cols=163  Identities=21%  Similarity=0.348  Sum_probs=141.0

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCC-----CCcCEEEEcCCC-Chhh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP-----TKYDGLVIPGGR-APEY   75 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~-----~~~D~livpGG~-~~~~   75 (195)
                      .||+.|+++|++|+++++...+.             ..++++.|.++.+|..+++++.     .+||+||||||. ++..
T Consensus        22 ~p~~vl~~ag~~v~~~s~~~~~~-------------~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~~~~   88 (194)
T 4gdh_A           22 APWGIFKRAEIPIDSVYVGENKD-------------RLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKT   88 (194)
T ss_dssp             HHHHHHHHTTCCEEEEEESSCTT-------------CEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHHHHH
T ss_pred             HHHHHHHHCCCeEEEEEEcCCCC-------------ceEecCCCceeeccccHhhCCccccccccCCEEEECCCchhHhH
Confidence            69999999999999999865321             2578889999999999988753     359999999996 4667


Q ss_pred             hccChHHHHHHHHHHhC-CCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCC
Q 029299           76 LAMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT  154 (195)
Q Consensus        76 l~~~~~l~~~l~~~~~~-~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g  154 (195)
                      +..++.+.+||++++++ +|++++||+|+ +|+++|+|+||++|+||...+.+++.+..|++..    +|+|||+||++|
T Consensus        89 l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~----vV~Dg~iiTs~g  163 (194)
T 4gdh_A           89 LSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQP----VVLEENLITSQG  163 (194)
T ss_dssp             HHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSS----EEEETTEEEECS
T ss_pred             hhhCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeeecce----EEEcCCEEECCC
Confidence            88899999999999875 79999999998 5677888999999999999999999999998765    899999999999


Q ss_pred             CCCHHHHHHHHHHHHcCcc-ccc-ccceee
Q 029299          155 YEGHPEFIRLFLKALGGTI-TGS-DKRILF  182 (195)
Q Consensus       155 ~~~~~~~~l~li~~l~~~~-a~~-~~~~~~  182 (195)
                      ++++++|++++|+++.++. |.+ ++.++|
T Consensus       164 ~~~~~d~al~lve~l~G~~~a~~va~~l~~  193 (194)
T 4gdh_A          164 PGTAMLFGLKLLEQVASKDKYNAVYKSLSM  193 (194)
T ss_dssp             GGGHHHHHHHHHHHHSCHHHHHHHHHHTTC
T ss_pred             HhHHHHHHHHHHHHHcCHHHHHHHHhhccC
Confidence            9999999999999999886 444 555554

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=3.1e-34  Score=225.68  Aligned_cols=161  Identities=17%  Similarity=0.273  Sum_probs=141.4

Q ss_pred             chhHHHHhC--CCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccC
Q 029299            2 VPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN   79 (195)
Q Consensus         2 ~p~~~l~~~--G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~   79 (195)
                      .|++.|+++  +++|+++|++++                +|++++|.++.++..++++  ++||+||||||.++..+..+
T Consensus        22 ~~~~~l~~a~~~~~v~~vs~~~~----------------~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~~~~~~~~~   83 (211)
T 3mgk_A           22 GPVEIFGNLQDDFELNFISSDGG----------------LVESSQKVRVETSLYTRDE--NIEKILFVPGGSGTREKVND   83 (211)
T ss_dssp             HHHHHHTTCTTTEEEEEECSSCE----------------EEECTTCCEEEEBCCCCCS--SSEEEEEECCSTHHHHHTTC
T ss_pred             HHHHHHHhCCCceEEEEEECCCC----------------eEecCCCcEEEeccchhhC--CCCCEEEECCCcchhhhcCC
Confidence            589999998  599999999865                5888999999999999886  46999999999887767789


Q ss_pred             hHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-C-CeeecCCCcceEEEcCCeEeCCCCCC
Q 029299           80 DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-G-ASWIEPETMAACVVDGNIITGATYEG  157 (195)
Q Consensus        80 ~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g-~~~~~~~~~~~~v~Dg~iiT~~g~~~  157 (195)
                      +.+++||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++. + ..+....   .+++|||+|||+|+.+
T Consensus        84 ~~~~~~l~~~~~~~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~---~~v~Dg~iiTs~G~~a  160 (211)
T 3mgk_A           84 DNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEA---RWVKDGNIYTSSGVSA  160 (211)
T ss_dssp             HHHHHHHHHHHHHCSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSC---SEEEETTEEEECSHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCC---eEEEeCCEEECCCHHH
Confidence            999999999999999999999999999999999999999999999999885 4 4444333   4999999999999999


Q ss_pred             HHHHHHHHHHHHcCcc-ccc-ccceeee
Q 029299          158 HPEFIRLFLKALGGTI-TGS-DKRILFL  183 (195)
Q Consensus       158 ~~~~~l~li~~l~~~~-a~~-~~~~~~~  183 (195)
                      ++||++++|+++.++. |.+ ++.++|.
T Consensus       161 ~~dlal~lv~~~~G~~~A~~va~~l~~~  188 (211)
T 3mgk_A          161 GIDMTLGFIEDLIGKEKALEISRSIEYF  188 (211)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHhcEEC
Confidence            9999999999888875 555 6666665

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=7.5e-34  Score=242.36  Aligned_cols=175  Identities=74%  Similarity=1.248  Sum_probs=155.3

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS   81 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~   81 (195)
                      .|++.|+++|++|+++||+++|.++...+..++.+.+.+.++.|..+.++.++++++..+||+||||||.++..+..++.
T Consensus        30 ~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~  109 (396)
T 3uk7_A           30 VPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTAS  109 (396)
T ss_dssp             HHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSHHHHHTTCHH
T ss_pred             HHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCEEEECCCcchhhcccCHH
Confidence            58999999999999999998776654444433444457888999999999999998778999999999988766778999


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHH
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF  161 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~  161 (195)
                      +.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++.|..|++.+++..+++|||+|||+|+.++++|
T Consensus       110 ~~~~l~~~~~~~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~d~  189 (396)
T 3uk7_A          110 VVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEF  189 (396)
T ss_dssp             HHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSGGGHHHH
T ss_pred             HHHHHHHHHHcCCEEEEECchHHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCcceEecCCEEEecCcccHHHH
Confidence            99999999999999999999999999999999999999999999999988899887655569999999999999999999


Q ss_pred             HHHHHHHHcCccccc
Q 029299          162 IRLFLKALGGTITGS  176 (195)
Q Consensus       162 ~l~li~~l~~~~a~~  176 (195)
                      ++++|+++.++....
T Consensus       190 al~li~~l~g~~~~~  204 (396)
T 3uk7_A          190 IQLFVKALGGKITGA  204 (396)
T ss_dssp             HHHHHHHTTCEEECC
T ss_pred             HHHHHHHHhccchhc
Confidence            999999999976444

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=6e-34  Score=221.04  Aligned_cols=150  Identities=34%  Similarity=0.614  Sum_probs=136.4

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCc-ceeeccCCCCCCCCCcCEEEEcCCCChhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~   80 (195)
                      .|++.|+++|++++++++.+++               ++.+++|. .+.++..+++++..+||+||||||.++..+..++
T Consensus        41 ~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~~l~~~~  105 (193)
T 1oi4_A           41 SPADEFRKAGHEVITIEKQAGK---------------TVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDN  105 (193)
T ss_dssp             HHHHHHHHTTCEEEEEESSTTC---------------EEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHTTSH
T ss_pred             HHHHHHHHCCCEEEEEECCCCc---------------ceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHHHhhhCH
Confidence            4899999999999999998652               27778888 9999999998766789999999998776666789


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCC-eEeCCCCCCHH
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGHP  159 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~-iiT~~g~~~~~  159 (195)
                      .+.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++.+..+.+..    +++||| +|||+|+.+++
T Consensus       106 ~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~----~v~Dg~~iiTs~g~~~~~  181 (193)
T 1oi4_A          106 RFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLP  181 (193)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS----CEEETTTEEEESSGGGHH
T ss_pred             HHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCC----EEEECCEEEECCCcchHH
Confidence            9999999999999999999999999999999999999999999999998888887764    788999 99999999999


Q ss_pred             HHHHHHHHHHc
Q 029299          160 EFIRLFLKALG  170 (195)
Q Consensus       160 ~~~l~li~~l~  170 (195)
                      ||++++|+++.
T Consensus       182 d~~l~li~~l~  192 (193)
T 1oi4_A          182 AFNREALRLLG  192 (193)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=1.4e-34  Score=226.13  Aligned_cols=160  Identities=16%  Similarity=0.251  Sum_probs=137.3

Q ss_pred             chhHHHHhCC------CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhh
Q 029299            2 VPFQALLAFG------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY   75 (195)
Q Consensus         2 ~p~~~l~~~G------~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~   75 (195)
                      .|++.|++++      |+|+++|++++                ++++++|+++.++ ++++++..+||+||||||.+...
T Consensus        23 ~~~dvl~~a~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG~~~~~   85 (202)
T 3gra_A           23 VAMDVLVTANLLRADSFQFTPLSLDGD----------------RVLSDLGLELVAT-ELSAAALKELDLLVVCGGLRTPL   85 (202)
T ss_dssp             HHHHHHHHHHHHSTTSEEEEEEESSSS----------------EEEBTTSCEEECE-ECCSGGGTTCSEEEEECCTTCCS
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEECCCC----------------ceEcCCCCEEECC-CcccccCCCCCEEEEeCCCchhh
Confidence            4889999876      99999999864                5888999999999 99987668999999999987654


Q ss_pred             hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHH-CCCeeecCCCcceEEEcCCeEeCCC
Q 029299           76 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETMAACVVDGNIITGAT  154 (195)
Q Consensus        76 l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~-~g~~~~~~~~~~~~v~Dg~iiT~~g  154 (195)
                      . . +.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.+++ +|...+..+   .+++|||+|||+|
T Consensus        86 ~-~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~---~~v~dg~iiTs~G  160 (202)
T 3gra_A           86 K-Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPA---SFTLDRDRLSAAS  160 (202)
T ss_dssp             C-C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSS---SEEEETTEEEESS
T ss_pred             c-c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCC---eEEEeCCEEECCC
Confidence            3 4 89999999999999999999999999999999999999999999999987 455444433   4999999999999


Q ss_pred             CCCHHHHHHHHHHHHcCcc-ccc-ccceeee
Q 029299          155 YEGHPEFIRLFLKALGGTI-TGS-DKRILFL  183 (195)
Q Consensus       155 ~~~~~~~~l~li~~l~~~~-a~~-~~~~~~~  183 (195)
                      +.+++||++++|+++.++. |.+ ++.++|.
T Consensus       161 ~~a~~dlal~li~~~~G~~~A~~va~~l~~~  191 (202)
T 3gra_A          161 PNGAMELMLGLVRRLYGDGLAEGVEEILSFS  191 (202)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhCcC
Confidence            9999999999999887775 555 5555553

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=6e-34  Score=223.68  Aligned_cols=160  Identities=13%  Similarity=0.173  Sum_probs=137.9

Q ss_pred             chhHHHHhCC-------CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299            2 VPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE   74 (195)
Q Consensus         2 ~p~~~l~~~G-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~   74 (195)
                      .|++.|++++       |+|.++|++++                +|++++|+++.++..++++  ++||+||||||.++.
T Consensus        26 ~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~v~~d~~~~~~--~~~D~livpGg~~~~   87 (209)
T 3er6_A           26 SSLEILETAAEFAEFQGFMTHVVTPNNR----------------PLIGRGGISVQPTAQWQSF--DFTNILIIGSIGDPL   87 (209)
T ss_dssp             HHHHHHHHHHHHTTCSCEEEEEECTTSS----------------CEEETTTEEEECSSCGGGC--SCCSEEEECCCSCHH
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEEeCCCC----------------ceecCCCeEEeCCcCcccc--CCCCEEEECCCCCch
Confidence            4888998874       99999999865                4888999999999999886  589999999998764


Q ss_pred             h--hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHH-CCC-eeecCCCcceEEEcCCeE
Q 029299           75 Y--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGA-SWIEPETMAACVVDGNII  150 (195)
Q Consensus        75 ~--l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~-~g~-~~~~~~~~~~~v~Dg~ii  150 (195)
                      .  +..++.+++||+++++++++|++||+|+++||++|||+||++|+||...+.+++ +|. .+....   .+++|||+|
T Consensus        88 ~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~---~~v~Dg~ii  164 (209)
T 3er6_A           88 ESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQ---KALIDGNVY  164 (209)
T ss_dssp             HHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTC---SEEEETTEE
T ss_pred             hhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCC---EEEEeCCEE
Confidence            4  357999999999999999999999999999999999999999999999999987 454 444332   499999999


Q ss_pred             eCCCCCCHHHHHHHHHHHHcCcc-ccc-ccceee
Q 029299          151 TGATYEGHPEFIRLFLKALGGTI-TGS-DKRILF  182 (195)
Q Consensus       151 T~~g~~~~~~~~l~li~~l~~~~-a~~-~~~~~~  182 (195)
                      ||+|+.+++||++++|+++.++. |.+ ++.++|
T Consensus       165 Ts~G~~a~~dlal~li~~~~G~~~A~~va~~l~~  198 (209)
T 3er6_A          165 LSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLST  198 (209)
T ss_dssp             EECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC
T ss_pred             ECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence            99999999999999999888775 555 555554

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=1.2e-34  Score=227.50  Aligned_cols=164  Identities=20%  Similarity=0.319  Sum_probs=139.5

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC-hhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~~~   80 (195)
                      .|++.|+++|++|+++|+++.               .++++++|..+.++..+++++..+||+||||||.+ +..+..++
T Consensus        27 ~~~~~l~~ag~~v~~vs~~g~---------------~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~~~~   91 (208)
T 3ot1_A           27 IIVDTLVRAGFQVTMAAVGDK---------------LQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADST   91 (208)
T ss_dssp             HHHHHHHHTTCEEEEEESSSC---------------SEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCEEEEEEcCCC---------------cceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHhhCH
Confidence            589999999999999999752               15788999999999999998777999999999974 55577899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHH-HHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEE--cCCeEeCCCCCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV--DGNIITGATYEG  157 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~-~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~--Dg~iiT~~g~~~  157 (195)
                      .+.+||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.+.  ...|.+..    +++  |||+|||+|+.+
T Consensus        92 ~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~--~~~~~~~~----vv~d~dg~iiTs~g~~a  165 (208)
T 3ot1_A           92 ALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIP--SERLSRQR----VCYYATQHLLTSQGPGT  165 (208)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSC--TTTBCCSS----EEEEGGGTEEEECSGGG
T ss_pred             HHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHcc--CCccccCc----EEEeCCCCEEECCCHHH
Confidence            99999999999999999999999 9999999999999999999877652  24444433    666  559999999999


Q ss_pred             HHHHHHHHHHHHcCcc-ccc-ccceeeeccC
Q 029299          158 HPEFIRLFLKALGGTI-TGS-DKRILFLCGV  186 (195)
Q Consensus       158 ~~~~~l~li~~l~~~~-a~~-~~~~~~~~~~  186 (195)
                      ++||++++|+++.++. +.+ ++.++|..+.
T Consensus       166 ~~d~al~lv~~l~G~~~a~~va~~l~~~~~~  196 (208)
T 3ot1_A          166 ALEFALAMIALLAGVELAQHVAAPMVLHPQQ  196 (208)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHGGGTCCHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhheeCCCC
Confidence            9999999999888875 555 7777774443

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=1.9e-33  Score=236.64  Aligned_cols=154  Identities=29%  Similarity=0.505  Sum_probs=141.1

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCc-ceeeccCCCCCCCCCcCEEEEcCCCChhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~   80 (195)
                      .|++.|+++|++|+++|+++++               .|.+++|. .+.++..+++++..+||+||||||.++..+..++
T Consensus        28 ~p~dvL~~Ag~~v~vvS~~~g~---------------~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~~l~~~~   92 (365)
T 3fse_A           28 IPCNGLKQAGFEVVVLGSRMNE---------------KYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMRRNP   92 (365)
T ss_dssp             HHHHHHHHTTCEEEEEESSSSC---------------CEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHHHHTTCH
T ss_pred             HHHHHHHHCCCEEEEEECCCCc---------------eeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchhhccCCH
Confidence            5899999999999999998753               37788999 9999999999876789999999999877677899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHH
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE  160 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~  160 (195)
                      .+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.|++.+..|.+.    .+|+|||+|||+|+.++++
T Consensus        93 ~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~----~vV~DGniITs~G~~a~~d  168 (365)
T 3fse_A           93 NTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDE----ALVVDGNLITSREPGDLAI  168 (365)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCS----SCEEETTEEEECSGGGHHH
T ss_pred             HHHHHHHHHHHCCCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecC----cEEEECCEEECCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999877887654    3899999999999999999


Q ss_pred             HHHHHHHHHcCccc
Q 029299          161 FIRLFLKALGGTIT  174 (195)
Q Consensus       161 ~~l~li~~l~~~~a  174 (195)
                      |++++|+.+.+...
T Consensus       169 ~al~lIe~L~g~~~  182 (365)
T 3fse_A          169 FTTAILSRLGYGGK  182 (365)
T ss_dssp             HHHHHHHHTTCCCS
T ss_pred             HHHHHHHHhcCchH
Confidence            99999999988753

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=1.2e-33  Score=221.52  Aligned_cols=166  Identities=19%  Similarity=0.190  Sum_probs=138.4

Q ss_pred             chhHHHHhC-CCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccCh
Q 029299            2 VPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~-G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~   80 (195)
                      .|++.|+++ |++|+++|+++                . +++++|.++.++.+++++ +.+||+||||||.++..  .++
T Consensus        21 ~~~~~l~~~~~~~v~~vs~~~----------------~-V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~--~~~   80 (206)
T 3f5d_A           21 YLASALNQREDWSVHTVSLDP----------------I-VSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSN--DNK   80 (206)
T ss_dssp             HHHHHHHTSTTEEEEEEESSS----------------E-EEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCC--CCH
T ss_pred             HHHHHHhccCCeEEEEEECCC----------------C-EEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhh--cCH
Confidence            589999998 99999999985                3 667889999999999987 46899999999998764  899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHH----C-CCeeecCCCcceEEEcCCeEeCCCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA----A-GASWIEPETMAACVVDGNIITGATY  155 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~----~-g~~~~~~~~~~~~v~Dg~iiT~~g~  155 (195)
                      .+.+||+++++++|+|++||+|+++|+++|||+||++|+||.  +.+++    . +..+.+.    .+++|||+|||+|+
T Consensus        81 ~l~~~l~~~~~~gk~iaaiC~G~~~La~aGLL~Gr~aTthw~--~~~~~~~~~~~~~~~~~~----~~V~Dg~iiTs~G~  154 (206)
T 3f5d_A           81 KLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFV--YLWKDYKQYKPISSFVEK----QAVRDKNLVTANGT  154 (206)
T ss_dssp             HHHHHHHHHHHTTCCEEEETHHHHHHHHTTTTTTSCBCCSCG--GGGTTCTTCCCSSCBCCS----SEEEETTEEEECTT
T ss_pred             HHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCCEEEccCH--HHhhhhHhhcCCCeEccC----CEEEECCEEECCCc
Confidence            999999999999999999999999999999999999999993  23332    2 4555543    49999999999998


Q ss_pred             CCHHHHHHHHHHHHcCccccc-ccceee-eccCcccccccc
Q 029299          156 EGHPEFIRLFLKALGGTITGS-DKRILF-LCGVSFCFQNLL  194 (195)
Q Consensus       156 ~~~~~~~l~li~~l~~~~a~~-~~~~~~-~~~~~~~~~~~~  194 (195)
                      . ++||++++|+.++.+.+.+ ++.++| ..|..++++.++
T Consensus       155 a-~id~al~li~~l~~~~a~~va~~~~~~~~g~~~~~~~~~  194 (206)
T 3f5d_A          155 A-PIEFTNLILEMIDFDTPENIEKMMYMNRYGFYHFCDKYG  194 (206)
T ss_dssp             C-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHCHHHHHHHHC
T ss_pred             h-HHHHHHHHHHHhCcchHHHHHHHhhhhhccchhhHHHhC
Confidence            5 9999999999998777777 444444 447766666543

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=7.8e-34  Score=222.33  Aligned_cols=164  Identities=21%  Similarity=0.391  Sum_probs=138.4

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC-hhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~~~   80 (195)
                      .|++.|+++|++++++|++++..             .++.+++|..+.++.++++++..+||+||||||.+ +..+..++
T Consensus        20 ~~~~~l~~ag~~v~~vs~~~~~~-------------~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~   86 (205)
T 2ab0_A           20 TTIDLLVRGGIKVTTASVASDGN-------------LAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDST   86 (205)
T ss_dssp             HHHHHHHHTTCEEEEEECSSTTC-------------CEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCH
T ss_pred             HHHHHHHHCCCEEEEEeCCCCCC-------------ceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhccCH
Confidence            58999999999999999986410             14778899999999999887778899999999974 55567799


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHH-HHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCe--EeCCCCCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNI--ITGATYEG  157 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~-~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~i--iT~~g~~~  157 (195)
                      .+.+||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.+.+  ..+.+.    .+++|||+  |||+|+.+
T Consensus        87 ~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~--~~~~~~----~vv~Dg~i~viTs~g~~s  160 (205)
T 2ab0_A           87 LLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPA--EQWLDK----RVVWDARVKLLTSQGPGT  160 (205)
T ss_dssp             HHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCT--TTBCCC----SEEEETTTTEEEECSGGG
T ss_pred             HHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccC--CEEecC----CEEEeCCcCeEECcChhh
Confidence            99999999999999999999999 99999999999999999986654432  344443    38899999  99999999


Q ss_pred             HHHHHHHHHHHHcCcc-ccc-ccceeeec
Q 029299          158 HPEFIRLFLKALGGTI-TGS-DKRILFLC  184 (195)
Q Consensus       158 ~~~~~l~li~~l~~~~-a~~-~~~~~~~~  184 (195)
                      +++|++++|+++.+.. |.+ ++.++|..
T Consensus       161 ~~d~al~li~~l~g~~~a~~va~~l~~~~  189 (205)
T 2ab0_A          161 AIDFGLKIIDLLVGREKAHEVASQLVMAA  189 (205)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTTCCT
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHhcccCC
Confidence            9999999999998876 455 66666654

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-32  Score=234.08  Aligned_cols=172  Identities=57%  Similarity=1.062  Sum_probs=149.7

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS   81 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~   81 (195)
                      .|++.|+++|++|+++||+++|+.....+..+..+.+.++++.|..+.++.++++++..+||+||||||.++..+..++.
T Consensus       223 ~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~~~~~~~~~~~  302 (396)
T 3uk7_A          223 VPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEH  302 (396)
T ss_dssp             HHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSHHHHHTTCHH
T ss_pred             HHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCcchhhhccCHH
Confidence            58999999999999999998764433333333344456888999999999999998778999999999988776778999


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHH
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF  161 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~  161 (195)
                      +.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.++..+..|++.++...+++|||+|||+|+.++.||
T Consensus       303 ~~~~l~~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~~~~d~  382 (396)
T 3uk7_A          303 VLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEF  382 (396)
T ss_dssp             HHHHHHHHHHTTCCEEEEGGGHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSGGGHHHH
T ss_pred             HHHHHHHHHHCCCEEEEEchHHHHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCceeEEEcCCEEECCCchhHHHH
Confidence            99999999999999999999999999999999999999999999998878888876421138999999999999999999


Q ss_pred             HHHHHHHHcCcc
Q 029299          162 IRLFLKALGGTI  173 (195)
Q Consensus       162 ~l~li~~l~~~~  173 (195)
                      ++++|+++.++.
T Consensus       383 ~l~li~~l~~~~  394 (396)
T 3uk7_A          383 VSQLMALLGIQV  394 (396)
T ss_dssp             HHHHHHHHTCEE
T ss_pred             HHHHHHHhcccc
Confidence            999999998764

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.98  E-value=6.3e-33  Score=222.55  Aligned_cols=172  Identities=19%  Similarity=0.282  Sum_probs=134.1

Q ss_pred             chhHHHHhCCCeEEEeCCCCCC-CCCCCcccc--CCCCccccc---cccCcceeeccCCCCCCCCCcCEEEEcCCCCh-h
Q 029299            2 VPFQALLAFGVSVDAACPGKKS-GDVCPTAVH--QSTGHQTYS---ETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-E   74 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~-~~~~~~~~~--~~~~~~~v~---~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~   74 (195)
                      +||++|+++|++|+++||+|++ .+..+....  ....++.+.   .+.+.++.++.++++++..+||+||||||+++ .
T Consensus        33 ~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~  112 (244)
T 3kkl_A           33 RSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALF  112 (244)
T ss_dssp             HHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CHHHHHTCEEGGGCCGGGCSEEEECCSTTHHH
T ss_pred             HHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHHHHhcCCCChHHCCHhhCCEEEEcCCCchhh
Confidence            6999999999999999998765 222111100  000011121   23457788999999998889999999999986 5


Q ss_pred             hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC-------CCCCCceEecCCCchH-------------------HHH
Q 029299           75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPPVKP-------------------VLI  128 (195)
Q Consensus        75 ~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a-------GlL~g~~~T~~~~~~~-------------------~l~  128 (195)
                      .+..++.+.+||+++++++|+|++||+|+++|+++       |||+||++|+||...+                   .++
T Consensus       113 ~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~  192 (244)
T 3kkl_A          113 DYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVAN  192 (244)
T ss_dssp             HGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEECCSCHHHHHHHTTHHHHHHTTCCCHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCceecCCCcHHHHhhhhhhhccccccccHHHHHH
Confidence            57889999999999999999999999999999999       9999999999998743                   455


Q ss_pred             HCCCeeecCC-C-cceEEEcCCeEeCCCCCCHHHHHHHHHHHHcCcc
Q 029299          129 AAGASWIEPE-T-MAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  173 (195)
Q Consensus       129 ~~g~~~~~~~-~-~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~~~  173 (195)
                      +.|+.|.+.. . ...+|+|||+||++|+.++.+|++++|+.+..-+
T Consensus       193 ~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~  239 (244)
T 3kkl_A          193 KNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVE  239 (244)
T ss_dssp             TTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC--
T ss_pred             HCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhh
Confidence            5688988741 1 1359999999999999999999999999887643

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=99.97  E-value=3.5e-32  Score=210.05  Aligned_cols=152  Identities=24%  Similarity=0.339  Sum_probs=130.6

Q ss_pred             chhHHHHh-CCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccCh
Q 029299            2 VPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~-~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~   80 (195)
                      .|++.|++ +|++|+++|++++                ++++++|..+.++.++++++..+||+||||||.+.. +..++
T Consensus        19 ~~~~~l~~a~~~~v~~vs~~~~----------------~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~-~~~~~   81 (188)
T 2fex_A           19 LLAAAARSYLGVEIVHATPDGM----------------PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE-KGTAA   81 (188)
T ss_dssp             HHHHHHHHHSCCEEEEEETTSS----------------CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH-HTCCC
T ss_pred             HHHHHHhhcCCceEEEEeCCCC----------------ceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc-ccccH
Confidence            58999999 9999999999875                377888999999999998876799999999998754 45788


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHH-CCC--eeecCCCcce-EEEcCCeEeCCCCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGA--SWIEPETMAA-CVVDGNIITGATYE  156 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~-~g~--~~~~~~~~~~-~v~Dg~iiT~~g~~  156 (195)
                      .+.+||+++++++|+|++||+|+++|+++|||+||++|+||.....+++ ++.  .+.+.    . +++|||+||++|+.
T Consensus        82 ~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~----~~~v~Dg~iiTs~g~~  157 (188)
T 2fex_A           82 DLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQ----PRAVSDGGVVTAAGSA  157 (188)
T ss_dssp             CCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCC----SSCEEETTEEEECTTC
T ss_pred             HHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecC----CCEEEECCEEECCCcc
Confidence            9999999999999999999999999999999999999999975555544 342  33333    4 89999999999985


Q ss_pred             CHHHHHHHHHHHHcCcccc
Q 029299          157 GHPEFIRLFLKALGGTITG  175 (195)
Q Consensus       157 ~~~~~~l~li~~l~~~~a~  175 (195)
                       ++||++++|+++.+...+
T Consensus       158 -~~d~al~lv~~l~~~~~~  175 (188)
T 2fex_A          158 -PVSFAVEILKSLGLFGPE  175 (188)
T ss_dssp             -HHHHHHHHHHHTTCCSHH
T ss_pred             -HHHHHHHHHHHccCCCHH
Confidence             999999999999887543

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.97  E-value=3.6e-32  Score=215.21  Aligned_cols=163  Identities=23%  Similarity=0.408  Sum_probs=132.9

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccC-----cceeeccCCCCCCCCCcCEEEEcCCCChh-h
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG-----HNFALNATFDEIDPTKYDGLVIPGGRAPE-Y   75 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~i~~~~~~~~~~~~~~D~livpGG~~~~-~   75 (195)
                      .|++.|+++|++|+++|+++++......+..+        ...|     .++.++..+++++..+||+||||||.+.. .
T Consensus        33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~--------~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~  104 (224)
T 1u9c_A           33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINE--------KDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFD  104 (224)
T ss_dssp             HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSS--------CCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHH
T ss_pred             HHHHHHHHCCCeEEEECCCCCccccCcccccc--------HHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHH
Confidence            59999999999999999988652211000000        0113     56888888888766789999999999864 4


Q ss_pred             hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC------CCCCceEecCCCchH---------------HHHHCCCee
Q 029299           76 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPVKP---------------VLIAAGASW  134 (195)
Q Consensus        76 l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG------lL~g~~~T~~~~~~~---------------~l~~~g~~~  134 (195)
                      +..++.+.+||+++++++|+|++||+|+++|+++|      ||+||++|+||...+               .+++.+..|
T Consensus       105 l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~T~~~~~~~~~~~~~~~~p~~~~~~l~~~g~~~  184 (224)
T 1u9c_A          105 FPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANF  184 (224)
T ss_dssp             STTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHHHHTCGGGSSSCHHHHHHHTTCEE
T ss_pred             hhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcEEecCCCHHHhhccccccCCccHHHHHHHcCCEE
Confidence            77899999999999999999999999999999999      999999999998655               466677788


Q ss_pred             ecCCCc-ceEEEcCCeEeCCCCCCHHHHHHHHHHHHcCc
Q 029299          135 IEPETM-AACVVDGNIITGATYEGHPEFIRLFLKALGGT  172 (195)
Q Consensus       135 ~~~~~~-~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~~  172 (195)
                      .+.+.+ ..+|+|||+|||+|+.++++|++++|+++.++
T Consensus       185 ~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~  223 (224)
T 1u9c_A          185 VRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  223 (224)
T ss_dssp             CCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             ecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence            765411 25999999999999999999999999988764

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.97  E-value=2.6e-32  Score=208.33  Aligned_cols=145  Identities=19%  Similarity=0.369  Sum_probs=126.8

Q ss_pred             hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCC--CCCCcCEEEEcCC--C-Chhhhc-
Q 029299            4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI--DPTKYDGLVIPGG--R-APEYLA-   77 (195)
Q Consensus         4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~--~~~~~D~livpGG--~-~~~~l~-   77 (195)
                      ++.+.++|++|+++|++++               +++++++|..+.++..++++  +..+||+||||||  . ++..+. 
T Consensus        22 ~e~~~~~~~~v~~vs~~~~---------------~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~   86 (175)
T 3cne_A           22 LEAFFENGISYKVFAVSDT---------------KEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYAN   86 (175)
T ss_dssp             HHHHHHTTCEEEEEESSSS---------------SEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTT
T ss_pred             hheeeeCCCEEEEEECCCC---------------CceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhh
Confidence            3444478999999999853               15788899999999999887  6678999999999  6 665555 


Q ss_pred             --cChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCC
Q 029299           78 --MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY  155 (195)
Q Consensus        78 --~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~  155 (195)
                        .++.+.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++  ..+.+.    .++.|||+|||+|+
T Consensus        87 ~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~~--~~~~~~----~~v~Dg~iiTs~g~  160 (175)
T 3cne_A           87 QPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQN--GIATDE----KSEIDGNFFTAQDE  160 (175)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCCS--SEEESS----SEEEETTEEEESSG
T ss_pred             cccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhhc--CEEeCC----CEEEeCCEEeCCCh
Confidence              6789999999999999999999999999999999999999999998887766  666554    49999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029299          156 EGHPEFIRLFLKAL  169 (195)
Q Consensus       156 ~~~~~~~l~li~~l  169 (195)
                      .+++||++++|+++
T Consensus       161 ~~~~d~al~li~~l  174 (175)
T 3cne_A          161 NTIWTMLPKVIEAL  174 (175)
T ss_dssp             GGGGGTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999987

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.97  E-value=3.6e-32  Score=218.38  Aligned_cols=170  Identities=22%  Similarity=0.353  Sum_probs=133.8

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCC-CCCCCccccCCC---Cccccccc---cCcceee-ccCCCCCCCCCcCEEEEcCCCC
Q 029299            1 MVPFQALLAFGVSVDAACPGKKS-GDVCPTAVHQST---GHQTYSET---RGHNFAL-NATFDEIDPTKYDGLVIPGGRA   72 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~-~~~~~~~~~~~~---~~~~v~~~---~g~~i~~-~~~~~~~~~~~~D~livpGG~~   72 (195)
                      ++||++|+++|++|+++||+|++ .++.+... .+.   .++.+...   .+..+.. +..+++++..+||+||||||++
T Consensus        38 ~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~v~~~~yD~l~ipGG~g  116 (247)
T 3n7t_A           38 LHPFNELTAAGFEVDVASETGTFGWDEHSLTQ-EYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHG  116 (247)
T ss_dssp             HHHHHHHHHTTCEEEEEESSSCCCBCSGGGSG-GGCCHHHHHHHTCSSCHHHHHHHHCCEEGGGSCGGGCSEEEECCSTT
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCcccCcccccc-cccCHHHHHHHHhhhHHHHHHHhccCCCHHHCChhhCCEEEEeCCCc
Confidence            37999999999999999998764 22111000 000   00111111   2344666 8889999888999999999998


Q ss_pred             h-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC------CCCCCceEecCCCchH-------------------H
Q 029299           73 P-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA------DVVKGRKCTAYPPVKP-------------------V  126 (195)
Q Consensus        73 ~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a------GlL~g~~~T~~~~~~~-------------------~  126 (195)
                      + ..+..++.+.+||+++++++|+|++||+|+++|+++      |||+||++|+||...+                   .
T Consensus       117 ~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~~l~~~  196 (247)
T 3n7t_A          117 ALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADM  196 (247)
T ss_dssp             HHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCEECCCCHHHHHHTTCHHHHHHTTCCCHHHH
T ss_pred             hhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCceecCCCcHHHhhhhhhhhccccchhhHHHH
Confidence            7 457889999999999999999999999999999999      9999999999998743                   3


Q ss_pred             HHHCCCeeecCC-C-cceEEEcCCeEeCCCCCCHHHHHHHHHHHHcC
Q 029299          127 LIAAGASWIEPE-T-MAACVVDGNIITGATYEGHPEFIRLFLKALGG  171 (195)
Q Consensus       127 l~~~g~~~~~~~-~-~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~  171 (195)
                      +++.|+.|.+.. . ...+|+|||+||++|+.++.+|++++|+.|..
T Consensus       197 l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~  243 (247)
T 3n7t_A          197 AQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEG  243 (247)
T ss_dssp             HHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHH
T ss_pred             HHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhh
Confidence            556789998741 1 23699999999999999999999999998864

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.97  E-value=3e-32  Score=218.56  Aligned_cols=168  Identities=19%  Similarity=0.286  Sum_probs=132.1

Q ss_pred             chhHHHHhCCCeEEEeCCCCCC-CCCCCccccC-CCC--cccc----ccccCcceeeccCCCCCCCCCcCEEEEcCCCCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKS-GDVCPTAVHQ-STG--HQTY----SETRGHNFALNATFDEIDPTKYDGLVIPGGRAP   73 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~-~~~~~~~~~~-~~~--~~~v----~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~   73 (195)
                      .||++|+++|++|+++||++++ .++.  +... +..  ...+    .++.|..+.++..+++++..+||+||||||+++
T Consensus        33 ~p~~vl~~ag~~v~~~s~~g~~~~d~~--s~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~D~livpGG~~~  110 (243)
T 1rw7_A           33 HPFNTFRKEGFEVDFVSETGKFGWDEH--SLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAGHGT  110 (243)
T ss_dssp             HHHHHHHHTTCEEEEECSSSCCCBCGG--GGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGEEEEEECCSTTH
T ss_pred             HHHHHHHHCCCEEEEECCCCCCCcCcc--cccccccChHHHHHHHhhhHHHHhhhccCCChHHCCHhhCcEEEECCCCCc
Confidence            6999999999999999998764 2211  1100 000  0000    112466788889999887789999999999986


Q ss_pred             -hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC-------CCCCceEecCCCchHH-------------------
Q 029299           74 -EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-------VVKGRKCTAYPPVKPV-------------------  126 (195)
Q Consensus        74 -~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG-------lL~g~~~T~~~~~~~~-------------------  126 (195)
                       ..+..++.+.+||+++++++|+|++||+|+++|+++|       ||+||++|+||...+.                   
T Consensus       111 ~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~~~T~~~~~~e~~~~~~~~~p~~~~~~l~~~  190 (243)
T 1rw7_A          111 LFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDV  190 (243)
T ss_dssp             HHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEECCSCHHHHHHTTCHHHHHHTTCCCHHHH
T ss_pred             hhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCcEEeecCCHHHhhccccccccccccccHHHH
Confidence             4477899999999999999999999999999999999       9999999999986554                   


Q ss_pred             HHHCCCeeecCC-C-cceEEEcCCeEeCCCCCCHHHHHHHHHHHHcC
Q 029299          127 LIAAGASWIEPE-T-MAACVVDGNIITGATYEGHPEFIRLFLKALGG  171 (195)
Q Consensus       127 l~~~g~~~~~~~-~-~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~  171 (195)
                      +++.++.|.... . +..+|+|||+|||+|+.++++|++++|+++..
T Consensus       191 l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          191 AKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             HHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             HHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence            555688887420 0 23599999999999999999999999997643

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=99.97  E-value=5.1e-32  Score=216.28  Aligned_cols=158  Identities=19%  Similarity=0.245  Sum_probs=136.7

Q ss_pred             chhHHHHhCC--CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCC-CChhhhcc
Q 029299            2 VPFQALLAFG--VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAM   78 (195)
Q Consensus         2 ~p~~~l~~~G--~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG-~~~~~l~~   78 (195)
                      .|++.|++++  ++|+++| +++                ++++++|..+.++..+++  ..+||+|||||| .++..+..
T Consensus        38 ~p~dvl~~~~~~~~v~~vs-~~~----------------~V~ss~G~~v~~d~~l~~--~~~~D~liVPGG~~g~~~l~~   98 (236)
T 3bhn_A           38 LMNDLLGRTSDSWTVRILG-TKP----------------EHHSQLGMTVKTDGHVSE--VKEQDVVLITSGYRGIPAALQ   98 (236)
T ss_dssp             HHHHHHTTCSSSEEEEEEE-SSS----------------EEEBTTCCEEECSEEGGG--GGGCSEEEECCCTTHHHHHHT
T ss_pred             HHHHHHHcCCCCEEEEEEE-CCC----------------cEEecCCcEEecCccccc--ccCCCEEEEcCCccCHhhhcc
Confidence            5899999977  8999999 764                477889999999998887  368999999999 67766778


Q ss_pred             ChHHHHHHHHHHhCCC-eEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCC
Q 029299           79 NDSVIDLVRKFSNSGK-TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG  157 (195)
Q Consensus        79 ~~~l~~~l~~~~~~~k-~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~  157 (195)
                      ++.+.+||  ++++++ +|++||+|+++|+++|||+||++|+||...+.+++.+..+.+.    .+++|||+|||+|+.+
T Consensus        99 ~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~----~vV~Dg~iiTs~G~~a  172 (236)
T 3bhn_A           99 DENFMSAL--KLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDL----PLVIEGNIATAGGCLS  172 (236)
T ss_dssp             CHHHHHHC--CCCTTTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSS----SEEEETTEEEECSGGG
T ss_pred             CHHHHHHH--HhCCCCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCC----cEEEeCCEEECCCHHH
Confidence            99999999  666676 9999999999999999999999999999999999987677443    4999999999999999


Q ss_pred             HHHHHHHHHHHHcCcc-ccc-ccceeeec
Q 029299          158 HPEFIRLFLKALGGTI-TGS-DKRILFLC  184 (195)
Q Consensus       158 ~~~~~l~li~~l~~~~-a~~-~~~~~~~~  184 (195)
                      ++||++++|+++.++. |.+ ++.++|..
T Consensus       173 ~~dlal~lIe~l~G~~~A~~va~~l~~~~  201 (236)
T 3bhn_A          173 LLYLVGWLAERLFDSVKRKQIQNQLIPAG  201 (236)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHTTTSCTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhcccCC
Confidence            9999999999998876 455 66666543

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.97  E-value=6.1e-32  Score=222.02  Aligned_cols=170  Identities=16%  Similarity=0.208  Sum_probs=135.2

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCcccccccc---CcceeeccCCCCC-----CCCCcCEEEEcCCCCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR---GHNFALNATFDEI-----DPTKYDGLVIPGGRAP   73 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~---g~~i~~~~~~~~~-----~~~~~D~livpGG~~~   73 (195)
                      .|++.|+++|++|+++|+++++.....++...  ....+.+..   |..+.++..++++     +..+||+||||||+++
T Consensus        80 ~p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~--~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~  157 (291)
T 1n57_A           80 LPLYHLHAAGFEFEVATISGLMTKFEYWAMPH--KDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGA  157 (291)
T ss_dssp             HHHHHHHHTTCCEEEEESSSCCCCBCGGGCCT--TCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGG
T ss_pred             HHHHHHHHCCCEEEEEeCCCCccccccccccc--ccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcch
Confidence            69999999999999999998764322222110  011233333   7788888888773     4679999999999987


Q ss_pred             h-hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC----CCCCceEecCCCchHHH-------------------HH
Q 029299           74 E-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD----VVKGRKCTAYPPVKPVL-------------------IA  129 (195)
Q Consensus        74 ~-~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG----lL~g~~~T~~~~~~~~l-------------------~~  129 (195)
                      . .+..++.+.+||+++++++|+|++||+|+++|++++    ||+||++|+||...+.+                   ++
T Consensus       158 ~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~GLL~Gr~~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~  237 (291)
T 1n57_A          158 LIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKK  237 (291)
T ss_dssp             GSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHH
T ss_pred             hhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhcccCccCCCCEEEeCCCHHHhhhccccccccccchhHHHHHHH
Confidence            6 577899999999999999999999999999988874    99999999999877653                   44


Q ss_pred             CCCeeecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcCcc
Q 029299          130 AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  173 (195)
Q Consensus       130 ~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~~~  173 (195)
                      .|+.|...+.+..+|+|||+|||+|+.++++|++++|+++.++.
T Consensus       238 ~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~  281 (291)
T 1n57_A          238 MGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAY  281 (291)
T ss_dssp             TTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCch
Confidence            57777732112359999999999999999999999999987764

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.95  E-value=5.4e-29  Score=198.30  Aligned_cols=161  Identities=21%  Similarity=0.289  Sum_probs=127.2

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeec-------cCCCCCCCCCcCEEEEcCCCChh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATFDEIDPTKYDGLVIPGGRAPE   74 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------~~~~~~~~~~~D~livpGG~~~~   74 (195)
                      .||+.|+++|++|+++|+++++....    +...+ +++.++.|..+.++       ..+++++..+||+||||||.++.
T Consensus        29 ~p~~~l~~ag~~v~~~s~~g~~~~v~----d~~s~-~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~  103 (232)
T 1vhq_A           29 LTLLAISRSGAQAVCFAPDKQQVDVI----NHLTG-EAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAA  103 (232)
T ss_dssp             HHHHHHHHTTCEEEEEECSSBCSCCB----CTTTC-CBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHH
T ss_pred             HHHHHHHHCCCEEEEEecCCCCCccc----ccccc-cchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchH
Confidence            59999999999999999988652110    01111 24566778877776       77888766789999999998752


Q ss_pred             -hh----------ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCC-CceEecC-C-CchHHHHHCCCeeecCCCc
Q 029299           75 -YL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK-GRKCTAY-P-PVKPVLIAAGASWIEPETM  140 (195)
Q Consensus        75 -~l----------~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~-g~~~T~~-~-~~~~~l~~~g~~~~~~~~~  140 (195)
                       .+          ..++.+.+||+++++++|+|++||+|+++|+++  |+ ||++|+| | ...+.+++.|+.|++...+
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a--L~~Gr~~Tth~~~~~~~~l~~~g~~~~~~~~~  181 (232)
T 1vhq_A          104 KNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI--FDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVD  181 (232)
T ss_dssp             HTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH--CSSCCEECCCSCHHHHHHHHHTTCEECCCCTT
T ss_pred             HHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH--hcCCCEEeccCCHHHHHHHHHcCCEEecCCCC
Confidence             12          248999999999999999999999999999999  79 9999999 6 5678888888888875322


Q ss_pred             ceEEE-cCCeEeCCCCCCHHHHHHHHHHHHcCcc
Q 029299          141 AACVV-DGNIITGATYEGHPEFIRLFLKALGGTI  173 (195)
Q Consensus       141 ~~~v~-Dg~iiT~~g~~~~~~~~l~li~~l~~~~  173 (195)
                      ..++. |||+|||+    +++|++++|+++.+..
T Consensus       182 ~~~vd~dg~liTs~----~~d~al~lv~~~~G~~  211 (232)
T 1vhq_A          182 DIVVDEDNKIVTTP----AYMLAQNIAEAASGID  211 (232)
T ss_dssp             CCEEETTTTEEEEC----GGGTCSSHHHHHHHHH
T ss_pred             ceEEecCCCEEECC----CHHHHHHHHHHHcCHH
Confidence            23443 59999996    8899999999888774

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.95  E-value=8.2e-29  Score=198.30  Aligned_cols=151  Identities=21%  Similarity=0.279  Sum_probs=120.6

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeec-------cCCCCCCCCCcCEEEEcCCCCh-
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATFDEIDPTKYDGLVIPGGRAP-   73 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------~~~~~~~~~~~D~livpGG~~~-   73 (195)
                      .||+.|+++|++|+++||++++....    +...+ +++.++.|+.+.++       .++++++..+||+||||||.+. 
T Consensus        46 ~p~~vL~~aG~~V~~~S~~~g~~~~~----~~~~g-~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~  120 (242)
T 3l3b_A           46 LVMLELDRHNVNFKCFAPNKNQKQVV----DHKKK-ESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVA  120 (242)
T ss_dssp             HHHHHHHHTTCEEEEEECSSBCSCEE----ETTTT-EEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHH
T ss_pred             HHHHHHHHCCCEEEEEecCCCccccc----ccccC-ccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchh
Confidence            69999999999999999988653221    11111 35677788888877       7788887789999999999864 


Q ss_pred             hhh-----------ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC-CCCCceEecCCCchHHHHHCCCeeecCCCcc
Q 029299           74 EYL-----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIAAGASWIEPETMA  141 (195)
Q Consensus        74 ~~l-----------~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG-lL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~  141 (195)
                      ..+           ..++.+.+||+++++++|+|++||+|+++|+++| ||+|+++|+||.....+++.|+.|++.+. .
T Consensus       121 ~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag~lL~Gr~~T~~~~~~~~l~~~Ga~~~~~~~-~  199 (242)
T 3l3b_A          121 KNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPT-I  199 (242)
T ss_dssp             HHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHHTTTCCCEECCCC----CHHHHTCEECCCCT-T
T ss_pred             hhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhCcccCCCEEEecCChHHHHHHCCCEEEcCCC-C
Confidence            222           4579999999999999999999999999999999 99999999999988778888999988531 2


Q ss_pred             eEEEc--CCeEeCCCCCCH
Q 029299          142 ACVVD--GNIITGATYEGH  158 (195)
Q Consensus       142 ~~v~D--g~iiT~~g~~~~  158 (195)
                      .+|+|  ||+||+++...+
T Consensus       200 ~vVvD~~g~liTs~a~~~~  218 (242)
T 3l3b_A          200 KSVKDDVNRIFSCSAYMRN  218 (242)
T ss_dssp             CCEEETTTTEEEECGGGSC
T ss_pred             eEEEECCCCEEECcCcccC
Confidence            47888  999999987543

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.81  E-value=3.7e-20  Score=166.78  Aligned_cols=133  Identities=18%  Similarity=0.237  Sum_probs=113.2

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC-ChhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR-APEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~l~~~~   80 (195)
                      .|++.|+++|++|+++|+.++                +|++++|..+.++..+++++..+||+||||||. ++..+..++
T Consensus       552 ~p~dvL~~AG~~V~ivS~~gg----------------~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~  615 (715)
T 1sy7_A          552 AAYAAISANQAIPLVIGPRRS----------------KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNG  615 (715)
T ss_dssp             HHHHHHHHTTCEEEEEESCSS----------------CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCH
T ss_pred             HHHHHHHhcCCEEEEEECCCC----------------ceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhccCH
Confidence            589999999999999999875                367788999999999998877789999999995 455677899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhC-CCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCC---
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE---  156 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~a-GlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~---  156 (195)
                      .+++||+++++++|+|++||+|+++|+++ ||.+-             ++.|.    .    .+|+|+++||++|+.   
T Consensus       616 ~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlGL~~L-------------~~aGa----~----~VVvDg~lITs~gp~~~~  674 (715)
T 1sy7_A          616 RALHWIREAFGHLKAIGATGEAVDLVAKAIALPQV-------------TVSSE----A----EVHESYGVVTLKKVKPES  674 (715)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTS-------------CCCCS----S----SCEEETTEEEESSCCTTT
T ss_pred             HHHHHHHHHHhCCCEEEEECHHHHHHHHccCcHhH-------------HhcCC----C----cEEEeCCEEECCCCcccc
Confidence            99999999999999999999999999999 98321             22222    2    389999999999986   


Q ss_pred             ---------CHHHHHHHHHHHHcC
Q 029299          157 ---------GHPEFIRLFLKALGG  171 (195)
Q Consensus       157 ---------~~~~~~l~li~~l~~  171 (195)
                               +..+|+..+++.+..
T Consensus       675 l~~~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          675 FTDAVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             TTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             cccccccccCHHHHHHHHHHHHHc
Confidence                     667799999998864

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.65  E-value=1.3e-16  Score=143.13  Aligned_cols=94  Identities=19%  Similarity=0.176  Sum_probs=87.7

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS   81 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~   81 (195)
                      .|++.|+++|++|+++++.++                .|+++.|..+.+|..+++++..+||+|||||| ++..+..++.
T Consensus       618 ~pvdaLr~AG~~V~vVS~~~g----------------~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr~d~~  680 (753)
T 3ttv_A          618 AILKALKAKGVHAKLLYSRMG----------------EVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIADNGD  680 (753)
T ss_dssp             HHHHHHHHHTCEEEEEESSSS----------------EEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTTTCHH
T ss_pred             HHHHHHHHCCCEEEEEEcCCC----------------eEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhhhCHH
Confidence            589999999999999999865                47888999999999999998788999999999 8888889999


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHHHHhCCCC
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLILAAADVV  112 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL  112 (195)
                      +++||+++++++|+|++||+|+++|+++||-
T Consensus       681 vl~~Vre~~~~gKpIAAIC~Gp~lLa~AGL~  711 (753)
T 3ttv_A          681 ANYYLMEAYKHLKPIALAGDARKFKATIKIA  711 (753)
T ss_dssp             HHHHHHHHHHTTCCEEEEGGGGGGGGGGTCC
T ss_pred             HHHHHHHHHhcCCeEEEECchHHHHHHcCCC
Confidence            9999999999999999999999999999973

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.46  E-value=1.6e-13  Score=122.60  Aligned_cols=112  Identities=18%  Similarity=0.258  Sum_probs=91.7

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC-C--------
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR-A--------   72 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~--------   72 (195)
                      .|++.|+++|++|+++++..+.                         .+|.++++++..+||+||||||. +        
T Consensus       549 ~~~~~L~~aG~~V~vVs~~~g~-------------------------~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~  603 (688)
T 2iuf_A          549 KLQVALSSVGVDVVVVAERXAN-------------------------NVDETYSASDAVQFDAVVVADGAEGLFGADSFT  603 (688)
T ss_dssp             HHHHHHGGGTCEEEEEESSCCT-------------------------TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTT
T ss_pred             HHHHHHHHCCCEEEEEeccCCc-------------------------ccccchhcCCccccCeEEecCCCcccccccccc
Confidence            5889999999999999996320                         55778888878899999999995 4        


Q ss_pred             --------hhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEE
Q 029299           73 --------PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACV  144 (195)
Q Consensus        73 --------~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v  144 (195)
                              +..|..++.++++|++++++||+|++||+|+++|.++|+..                               
T Consensus       604 ~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~aGi~~-------------------------------  652 (688)
T 2iuf_A          604 VEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESGQISS-------------------------------  652 (688)
T ss_dssp             CCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHTTCCT-------------------------------
T ss_pred             cccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHcCCCC-------------------------------
Confidence                    55688899999999999999999999999999999999842                               


Q ss_pred             EcCCeEeCCCCCCHHHHHHHHHHHHcC
Q 029299          145 VDGNIITGATYEGHPEFIRLFLKALGG  171 (195)
Q Consensus       145 ~Dg~iiT~~g~~~~~~~~l~li~~l~~  171 (195)
                      .|.++||++++  .-+|+..+++.+..
T Consensus       653 ~d~GVvts~~~--~~~f~~~fi~~la~  677 (688)
T 2iuf_A          653 ERQGVYTGKNA--GDAFAKDIKSGLST  677 (688)
T ss_dssp             TSTTEEEESSS--SHHHHHHHHHHHHH
T ss_pred             CCCCEEEcCCc--cHHHHHHHHHHHHh
Confidence            24567777665  44577777776543

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.38  E-value=1e-12  Score=117.23  Aligned_cols=86  Identities=19%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh--------
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP--------   73 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--------   73 (195)
                      .|++.|+++|++|++++|..+                     .|    +|.++++++..+||+||||||...        
T Consensus       556 ~p~~aL~~aGa~V~vVsp~~g---------------------~G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~  610 (688)
T 3ej6_A          556 ALKEQLEKDGLKVTVIAEYLA---------------------SG----VDQTYSAADATAFDAVVVAEGAERVFSGKGAM  610 (688)
T ss_dssp             HHHHHHHHTTCEEEEEESSCC---------------------TT----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTC
T ss_pred             HHHHHHHHCCCEEEEEeCCCC---------------------CC----cccCcccCChhcCcEEEECCCcccccccccch
Confidence            588999999999999999742                     12    688899888889999999999642        


Q ss_pred             hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCC
Q 029299           74 EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  112 (195)
Q Consensus        74 ~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL  112 (195)
                      ..|..++.+++||+++++++|+|++||+|+++|.++|+-
T Consensus       611 d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~AGI~  649 (688)
T 3ej6_A          611 SPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSIGVE  649 (688)
T ss_dssp             CTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTCC
T ss_pred             hhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHcCCC
Confidence            567889999999999999999999999999999999973

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=98.97  E-value=8.9e-10  Score=85.50  Aligned_cols=56  Identities=30%  Similarity=0.568  Sum_probs=47.3

Q ss_pred             CCcCEEEEcCCCChh-h-----hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCc
Q 029299           60 TKYDGLVIPGGRAPE-Y-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  115 (195)
Q Consensus        60 ~~~D~livpGG~~~~-~-----l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~  115 (195)
                      .++|+||||||.... .     +..++.+.++|+++.+++++|.+||.|.++|+.+|+|.|+
T Consensus        40 ~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~  101 (213)
T 3d54_D           40 DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGA  101 (213)
T ss_dssp             SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSE
T ss_pred             ccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCC
Confidence            579999999996532 1     1235678999999999999999999999999999999884

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.36  E-value=2.8e-07  Score=71.94  Aligned_cols=50  Identities=30%  Similarity=0.634  Sum_probs=40.8

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+||+|||+...  .+..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        59 ~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~  110 (219)
T 1q7r_A           59 EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR  110 (219)
T ss_dssp             TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             hhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            579999999997532  23234456799999999999999999999999985

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.33  E-value=4e-07  Score=69.65  Aligned_cols=50  Identities=32%  Similarity=0.654  Sum_probs=40.4

Q ss_pred             CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+||+|||...  ..+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus        37 ~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~   88 (196)
T 2nv0_A           37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (196)
T ss_dssp             GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             hhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence            46899999999743  223233456899999999999999999999999985

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=98.28  E-value=6.3e-07  Score=68.20  Aligned_cols=47  Identities=19%  Similarity=0.417  Sum_probs=38.8

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||+.+.   ....+.++|+++.++++|+.+||.|.++|+.+
T Consensus        42 ~~~dglil~Gg~~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~   88 (189)
T 1wl8_A           42 MNPKGIIFSGGPSLE---NTGNCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (189)
T ss_dssp             TCCSEEEECCCSCTT---CCTTHHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             cCCCEEEECCCCChh---hhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHH
Confidence            369999999997332   24556889988778999999999999999986

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=98.18  E-value=1.1e-06  Score=68.05  Aligned_cols=50  Identities=24%  Similarity=0.465  Sum_probs=39.4

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+||+|||....  .+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus        56 ~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~  107 (208)
T 2iss_D           56 DMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKR  107 (208)
T ss_dssp             GGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEE
T ss_pred             hhCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence            469999999985321  12223446789999999999999999999999986

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.16  E-value=6e-06  Score=65.10  Aligned_cols=50  Identities=24%  Similarity=0.504  Sum_probs=40.4

Q ss_pred             CCcCEEEEcCCCCh-hh----hccC--hHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP-EY----LAMN--DSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~-~~----l~~~--~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||+|||+||++. ..    ...-  ..+.++|+++.++++||.+||.|.++|+.+
T Consensus        44 ~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~  100 (236)
T 3l7n_A           44 DDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA  100 (236)
T ss_dssp             GGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHH
T ss_pred             cccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHH
Confidence            57999999999864 21    1111  347899999999999999999999999986

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.16  E-value=1.6e-06  Score=65.80  Aligned_cols=50  Identities=30%  Similarity=0.468  Sum_probs=40.2

Q ss_pred             CCcCEEEEcCCCC--hhhhccChHHHHHHHHHHhCC-CeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRA--PEYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~--~~~l~~~~~l~~~l~~~~~~~-k~i~aic~G~~lLa~a  109 (195)
                      +++|.|++|||+.  ...+..+..+.++|+++.+++ +||.+||.|.++|+.+
T Consensus        38 ~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~   90 (191)
T 2ywd_A           38 EGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE   90 (191)
T ss_dssp             TTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred             ccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence            4689999999953  222322456789999999999 9999999999999986

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=98.14  E-value=4.1e-06  Score=66.81  Aligned_cols=50  Identities=24%  Similarity=0.395  Sum_probs=40.5

Q ss_pred             CCcCEEEEcCCCCh-h-hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP-E-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~-~-~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||.|||+||+.. . .......+.++|+++.+.++|+.+||.|.++|+.+
T Consensus        47 ~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~   98 (250)
T 3m3p_A           47 RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA   98 (250)
T ss_dssp             GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             ccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            57999999999753 2 12223467899999999999999999999999986

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=98.14  E-value=2.9e-06  Score=65.08  Aligned_cols=50  Identities=24%  Similarity=0.398  Sum_probs=39.4

Q ss_pred             CCcCEEEEcCCCCh-hhh--ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP-EYL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~-~~l--~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+||+..+ ..+  ..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        39 ~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   91 (200)
T 1ka9_H           39 EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   91 (200)
T ss_dssp             SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             ccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHh
Confidence            47999999985333 111  123457899999999999999999999999997

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=98.08  E-value=1.9e-06  Score=65.95  Aligned_cols=48  Identities=19%  Similarity=0.305  Sum_probs=36.3

Q ss_pred             CcCEEEEcCCCChhh-hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~~~-l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++|.||++||.+... ..+.+...++|+++ ++++|+.+||.|.++|+.+
T Consensus        45 ~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~   93 (195)
T 1qdl_B           45 DPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             CCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHH
T ss_pred             CCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHH
Confidence            589999988876422 11122356888875 8899999999999999986

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=98.07  E-value=4.8e-06  Score=79.68  Aligned_cols=57  Identities=19%  Similarity=0.356  Sum_probs=46.8

Q ss_pred             CCCcCEEEEcCCCChh-----------hhccChHHHHHHHHHH-hCCCeEEEecHHHHHHHhC-CCCCCc
Q 029299           59 PTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAA-DVVKGR  115 (195)
Q Consensus        59 ~~~~D~livpGG~~~~-----------~l~~~~~l~~~l~~~~-~~~k~i~aic~G~~lLa~a-GlL~g~  115 (195)
                      ..++|.|++|||....           ....++.+.+.|++++ ++++++.+||+|.++|.++ |||.|.
T Consensus      1090 l~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1090 LGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS 1159 (1303)
T ss_dssp             GGGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred             HhhCCEEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCC
Confidence            4679999999996421           1335677888899866 6899999999999999999 999986

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=97.91  E-value=1.2e-05  Score=67.78  Aligned_cols=48  Identities=27%  Similarity=0.444  Sum_probs=41.1

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||++||++...  ......++|+++.++++||.+||.|.++|+.+
T Consensus       230 ~~~DGliLsGGPgdp~--~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A  277 (379)
T 1a9x_B          230 MNPDGIFLSNGPGDPA--PCDYAITAIQKFLETDIPVFGICLGHQLLALA  277 (379)
T ss_dssp             TCCSEEEECCCSBCST--TCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCChH--HHHHHHHHHHHHHHcCCCEEEECchHHHHHHH
Confidence            4699999999986432  35678899999999999999999999999986

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.82  E-value=4.4e-05  Score=60.26  Aligned_cols=50  Identities=20%  Similarity=0.315  Sum_probs=39.6

Q ss_pred             CCcCEEEEcCCCC-hhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~-~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||+. +..   ......+.++|+++.++++|+.+||.|.++|+.+
T Consensus        56 ~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~a  109 (239)
T 1o1y_A           56 EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  109 (239)
T ss_dssp             GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hcCCEEEECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHH
Confidence            5799999999974 211   1111367899999999999999999999999986

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.79  E-value=1.4e-05  Score=62.51  Aligned_cols=50  Identities=30%  Similarity=0.523  Sum_probs=40.6

Q ss_pred             CCcCEEEEcCCCCh--hhhccC--hHHHHHHHHHHhC-CCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP--EYLAMN--DSVIDLVRKFSNS-GKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~--~~l~~~l~~~~~~-~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||...  ..+..+  ..+.++|+++.++ ++||.+||.|.++|+.+
T Consensus        42 ~~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~   96 (227)
T 2abw_A           42 GLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   96 (227)
T ss_dssp             HTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             ccCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence            46999999998742  223232  5689999999999 99999999999999986

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=97.78  E-value=1.7e-05  Score=63.21  Aligned_cols=50  Identities=32%  Similarity=0.545  Sum_probs=39.4

Q ss_pred             CCcCEEEEcCCCCh--hhhc-------------cChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP--EYLA-------------MNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~-------------~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      +++|.||++||.+.  ..+.             .+...+++|+++.++++||.+||.|.++|+.+
T Consensus        60 ~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a  124 (254)
T 3fij_A           60 SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVA  124 (254)
T ss_dssp             HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            46999999999651  1111             12347899999999999999999999999986

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.76  E-value=3.2e-05  Score=58.44  Aligned_cols=47  Identities=28%  Similarity=0.571  Sum_probs=34.9

Q ss_pred             CCcCEEEEcCCCChhh--hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~--l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||++...  +.....+.++++   ++++|+.+||.|.++|+.+
T Consensus        36 ~~~dglil~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G~Qll~~~   84 (186)
T 2ywj_A           36 EGIDALIIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAGMVLLSKG   84 (186)
T ss_dssp             TTCSEEEECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHHHHHHSSC
T ss_pred             ccCCEEEECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHHHHHHHHH
Confidence            5689999999975321  111223556665   7899999999999999987

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=97.68  E-value=5.8e-05  Score=61.28  Aligned_cols=47  Identities=15%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||++...+   +.+.++++++.++++||.+||.|.++|+.+
T Consensus        89 ~~~dgiil~GG~~~~~~---~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a  135 (289)
T 2v4u_A           89 CKADGILVPGGFGIRGT---LGKLQAISWARTKKIPFLGVXLGMQLAVIE  135 (289)
T ss_dssp             HHCSEEEECSCCSSTTH---HHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hhCCEEEecCCCCchhH---HHHHHHHHHHHHcCCcEEEECccHHHHHHH
Confidence            46899999999875322   568899999999999999999999999873

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.62  E-value=9.5e-05  Score=57.23  Aligned_cols=47  Identities=30%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             CCcCEEEEcCC-CChhh-hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGG-RAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG-~~~~~-l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+||| ++... ....+.+.++   ..++++|+.+||.|.++|+.+
T Consensus        53 ~~~DglIl~GG~p~~~~~~~~~~~l~~~---~~~~~~PiLGIC~G~Qll~~~  101 (212)
T 2a9v_A           53 DGLDGLVLSGGAPNIDEELDKLGSVGKY---IDDHNYPILGICVGAQFIALH  101 (212)
T ss_dssp             TTCSEEEEEEECSCGGGTGGGHHHHHHH---HHHCCSCEEEETHHHHHHHHH
T ss_pred             hCCCEEEECCCCCCCCcccccchhHHHH---HHhCCCCEEEEChHHHHHHHH
Confidence            35999999999 65421 1122334444   357899999999999999986

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=97.51  E-value=1.2e-05  Score=62.05  Aligned_cols=50  Identities=24%  Similarity=0.308  Sum_probs=36.0

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+||+..+......-....+++...+.++|+.+||.|.++|+.+
T Consensus        39 ~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~   88 (211)
T 4gud_A           39 LAADKLFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKL   88 (211)
T ss_dssp             HHCSEEEECCCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSE
T ss_pred             hCCCEEEECCCCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHH
Confidence            35799999986544322122223346777788999999999999999875

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.50  E-value=8.3e-05  Score=56.80  Aligned_cols=51  Identities=27%  Similarity=0.442  Sum_probs=38.7

Q ss_pred             CCcCEEEEcCCCChh-hh--ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299           60 TKYDGLVIPGGRAPE-YL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  110 (195)
Q Consensus        60 ~~~D~livpGG~~~~-~l--~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG  110 (195)
                      .++|.||+||+..+. ..  ..+..+.++|+++.++++||.+||.|.++|+.+.
T Consensus        41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~   94 (201)
T 1gpw_B           41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES   94 (201)
T ss_dssp             SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEE
T ss_pred             cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhh
Confidence            579999999963321 11  1112377899999999999999999999999874

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=97.44  E-value=1.4e-05  Score=62.28  Aligned_cols=47  Identities=19%  Similarity=0.365  Sum_probs=29.4

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||.+...-...+   .+.+...++++|+.+||.|.++|+.+
T Consensus        66 ~~~dglil~Gg~~~~~~~~~~---~~~~~~~~~~~PilGIC~G~Qll~~~  112 (218)
T 2vpi_A           66 QGFRAIIISGGPNSVYAEDAP---WFDPAIFTIGKPVLGICYGMQMMNKV  112 (218)
T ss_dssp             HTCSEEEEEC---------CC---CCCGGGGTSSCCEEEETHHHHHHHHH
T ss_pred             cCCCEEEECCCCcccccccch---hHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            469999999997532111111   12234457899999999999999985

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=97.40  E-value=0.0002  Score=57.57  Aligned_cols=46  Identities=15%  Similarity=0.181  Sum_probs=38.6

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      .++|.||+|||++...   .+...++++++.++++|+.+||.|.++|+.
T Consensus        66 ~~~dgiil~GG~~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Qll~~  111 (273)
T 2w7t_A           66 LGCDGIFVPGGFGNRG---VDGKCAAAQVARMNNIPYFGVXLGMQVAVI  111 (273)
T ss_dssp             HTCSEEEECCCCTTTT---HHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred             hhCCEEEecCCCCCcC---chhHHHHHHHHHHCCCcEEEECcCHHHHHH
Confidence            4689999999976532   235778899999999999999999999986

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=97.35  E-value=0.00011  Score=60.38  Aligned_cols=50  Identities=18%  Similarity=0.300  Sum_probs=36.0

Q ss_pred             CCcCEEEEcCCCC-hhh--h-ccChHHHHHHHHHHhCC--CeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRA-PEY--L-AMNDSVIDLVRKFSNSG--KTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~-~~~--l-~~~~~l~~~l~~~~~~~--k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||.+ +..  + .....+.+.++++.+++  +||.+||.|.++|+.+
T Consensus        85 ~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a  140 (315)
T 1l9x_A           85 KSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  140 (315)
T ss_dssp             HHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             hcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH
Confidence            3689999999974 211  1 01135677777776664  9999999999999875

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=97.33  E-value=0.00024  Score=62.70  Aligned_cols=56  Identities=20%  Similarity=0.321  Sum_probs=37.7

Q ss_pred             CCCCCCCCcCEEEEcCCCChhhhccChHH-HHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           54 FDEIDPTKYDGLVIPGGRAPEYLAMNDSV-IDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        54 ~~~~~~~~~D~livpGG~~~~~l~~~~~l-~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++++...++|.||+|||++.......+.+ ..+++.+.++++|+.+||.|.++|+.+
T Consensus        43 ~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~   99 (556)
T 3uow_A           43 LKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQ   99 (556)
T ss_dssp             GGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             HHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHH
Confidence            33333347899999999864221112222 244555667899999999999999986

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.18  E-value=0.00017  Score=55.71  Aligned_cols=50  Identities=18%  Similarity=0.143  Sum_probs=40.9

Q ss_pred             CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+.|+|++|||...  ........+.+.|++++++|++++++|.|+.+|++.
T Consensus        78 ~~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A           78 RKNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPN  129 (206)
T ss_dssp             HHSSEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred             HhCCEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence            45899999998643  223456678999999999999999999999999753

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=97.17  E-value=0.00015  Score=56.85  Aligned_cols=51  Identities=10%  Similarity=0.119  Sum_probs=41.1

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  110 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG  110 (195)
                      .+.|+||+|||....  .......+.+.|++++++|+|++++|.|+.+|++..
T Consensus        78 ~~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A           78 EKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             hcCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence            458999999986432  233455688999999999999999999999998753

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=97.04  E-value=0.00085  Score=58.49  Aligned_cols=48  Identities=13%  Similarity=0.235  Sum_probs=40.8

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..++|.|++|||+|...   .....++|+.+.++++|+.+||.|.++|+.+
T Consensus       348 L~~~DgIIlpGG~G~~~---~~g~i~~ir~a~~~~~PiLGIClG~Qll~va  395 (535)
T 3nva_A          348 LGNVNGIIVLPGFGSRG---AEGKIKAIKYAREHNIPFLGICFGFQLSIVE  395 (535)
T ss_dssp             TTSCSEEEECCCCSSTT---HHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             ccCCCEEEECCCCCCcc---HHHHHHHHHHHHHcCCcEEEECcchhHHHHH
Confidence            46899999999987532   3567889999999999999999999998765

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=96.92  E-value=0.00062  Score=59.72  Aligned_cols=47  Identities=17%  Similarity=0.258  Sum_probs=32.2

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||++...   +.......+..++.++||.+||.|.++|+.+
T Consensus        52 ~~~dgIILsGGp~sv~---~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~   98 (527)
T 3tqi_A           52 FNPHGIILSGGPETVT---LSHTLRAPAFIFEIGCPVLGICYGMQTMAYQ   98 (527)
T ss_dssp             TCCSEEEECCCCC------------CCCSTTTSSSCEEEETHHHHHHHHH
T ss_pred             cCCCEEEECCcCcccc---cCCChhhHHHHHhcCCCEEEEChHHHHHHHH
Confidence            3579999999976321   1222334456678899999999999999976

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=96.86  E-value=0.0014  Score=57.57  Aligned_cols=47  Identities=17%  Similarity=0.318  Sum_probs=39.2

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||+|....   +...++++.+.++++|+.+||.|.++|+.+
T Consensus       354 ~~~DGIILpGGfGd~~~---~g~i~~ir~a~e~~iPiLGICLGmQlL~~a  400 (550)
T 1vco_A          354 RDVSGILVPGGFGVRGI---EGKVRAAQYARERKIPYLGICLGLQIAVIE  400 (550)
T ss_dssp             TTCSCEEECCCCSSTTH---HHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hcCCEEEECCCCCCcch---hhhHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence            57999999999875422   346688898888999999999999999865

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.85  E-value=0.00087  Score=59.14  Aligned_cols=50  Identities=26%  Similarity=0.310  Sum_probs=38.4

Q ss_pred             CCcCEEEEcCCCChhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||..+..   ...+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus        43 ~~~DglILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a   95 (555)
T 1jvn_A           43 SGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG   95 (555)
T ss_dssp             TTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEE
T ss_pred             ccCCEEEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhh
Confidence            4799999999533211   1122346789999999999999999999999986

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=96.85  E-value=0.0018  Score=56.96  Aligned_cols=48  Identities=19%  Similarity=0.287  Sum_probs=40.0

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..++|.||+|||+|...   .....++++++.++++|+.+||.|.++|+.+
T Consensus       341 l~~~DGIilsGGpg~~~---~~g~~~~i~~a~~~~~PiLGIClG~Qll~va  388 (545)
T 1s1m_A          341 LKGLDAILVPGGFGYRG---VEGMITTARFARENNIPYLGICLGMQVALID  388 (545)
T ss_dssp             TTTCSEEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hhcCCEEEECCCCCCcc---chhhHHHHHHHHHCCCcEEEECChHHHHHHH
Confidence            35799999999987542   2457788999999999999999999999863

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=96.83  E-value=0.0015  Score=49.45  Aligned_cols=45  Identities=18%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             cCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           62 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        62 ~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .|.+|+.||.+...  +......+++ ..++++|+.+||.|.++|+.+
T Consensus        48 ~~~iil~gGpg~~~--~~~~~~~l~~-~~~~~~PilGIC~G~Qll~~~   92 (192)
T 1i1q_B           48 NPVLMLSPGPGVPS--EAGCMPELLT-RLRGKLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             SEEEEECCCSSCGG--GSTTHHHHHH-HHBTTBCEEEETHHHHHHHHH
T ss_pred             CCeEEECCCCcCch--hCchHHHHHH-HHhcCCCEEEECcChHHHHHH
Confidence            44577777776432  1223344444 467899999999999999986

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=96.81  E-value=0.0019  Score=57.98  Aligned_cols=51  Identities=24%  Similarity=0.377  Sum_probs=40.3

Q ss_pred             CCCcCEEEEcCCCChhhhccC---hHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           59 PTKYDGLVIPGGRAPEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~---~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..++|.|||+||++...-..+   ..+.++|+++.+.++|+.+||-|.++|+.+
T Consensus       484 ~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~a  537 (645)
T 3r75_A          484 LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAI  537 (645)
T ss_dssp             GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence            457999999999874321122   246788999999999999999999999975

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=96.24  E-value=0.0048  Score=50.51  Aligned_cols=56  Identities=18%  Similarity=0.288  Sum_probs=42.2

Q ss_pred             CCCCCCCCCcCEEEEcCCCC-h---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           53 TFDEIDPTKYDGLVIPGGRA-P---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        53 ~~~~~~~~~~D~livpGG~~-~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      ++.+++..+||++||-|++- .   +....-+++.++++...++++++.+||-|.++++.
T Consensus       103 ~f~~~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~  162 (312)
T 2h2w_A          103 TFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLY  162 (312)
T ss_dssp             CGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred             CcccccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHH
Confidence            35555557899999999973 2   22222367888999888999999999999999444

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=96.20  E-value=0.0012  Score=57.90  Aligned_cols=46  Identities=15%  Similarity=0.312  Sum_probs=32.3

Q ss_pred             CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+|.||+|||++...-...+.+   .+...+.++||.+||.|.++|+.+
T Consensus        50 ~~dgiILsGGp~s~~~~~~~~~---~~~~~~~g~PvLGIC~G~Qlla~~   95 (525)
T 1gpm_A           50 NPSGIILSGGPESTTEENSPRA---PQYVFEAGVPVFGVCYGMQTMAMQ   95 (525)
T ss_dssp             CCSEEEECCCSSCTTSTTCCCC---CGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             CCCEEEECCcCccccccCCcch---HHHHHHCCCCEEEEChHHHHHHHH
Confidence            4699999999753211111222   244567899999999999999985

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=96.13  E-value=0.0021  Score=56.05  Aligned_cols=46  Identities=22%  Similarity=0.371  Sum_probs=32.3

Q ss_pred             CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+|.||++||++...-...+.+   .+...+.++||.+||.|.++|+.+
T Consensus        42 ~~dgiIlsGGp~s~~~~~~~~~---~~~~~~~~~PvLGIC~G~Qlla~~   87 (503)
T 2ywb_A           42 RPQALILSGGPRSVFDPDAPRP---DPRLFSSGLPLLGICYGMQLLAQE   87 (503)
T ss_dssp             CCSEEEECCCSSCSSCTTCCCC---CGGGGCSSCCEEEETHHHHHHHHT
T ss_pred             CCCEEEECCCCchhccCCCcch---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            4699999999763211111111   244567899999999999999986

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=95.81  E-value=0.0046  Score=50.40  Aligned_cols=51  Identities=20%  Similarity=0.318  Sum_probs=39.3

Q ss_pred             CCCCcCEEEEcCCCC-h---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299           58 DPTKYDGLVIPGGRA-P---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  108 (195)
Q Consensus        58 ~~~~~D~livpGG~~-~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~  108 (195)
                      +..+||++||-|++- .   +....-+++.++++...++++++.+||-|.++++.
T Consensus        96 ~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~  150 (301)
T 2vdj_A           96 ENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLY  150 (301)
T ss_dssp             TTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred             cccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHH
Confidence            346899999999973 2   12222367888999888999999999999999443

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=95.69  E-value=0.0016  Score=58.89  Aligned_cols=47  Identities=19%  Similarity=0.365  Sum_probs=31.1

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+||++||++...-...+.+   .+...+.++||.+||.|.++|+.+
T Consensus        71 ~~~dGIILsGGp~s~~~~~~~~~---~~~i~~~g~PvLGIC~G~QlLa~~  117 (697)
T 2vxo_A           71 QGFRAIIISGGPNSVYAEDAPWF---DPAIFTIGKPVLGICYGMQMMNKV  117 (697)
T ss_dssp             HTCSEEEEEECC-------CCCC---CGGGTTSSCCEEEEEHHHHHHHHH
T ss_pred             cCCCEEEECCCCCcccCccchhH---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            46899999999863211111111   233457899999999999999985

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=94.30  E-value=0.027  Score=45.57  Aligned_cols=49  Identities=18%  Similarity=0.407  Sum_probs=40.3

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCC-CeEEEecHHHHHHHh
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAA  108 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~-k~i~aic~G~~lLa~  108 (195)
                      .+.|+|+|+||.-..  .......+.+.|++.+++| .++++.|.|+.+++.
T Consensus       109 ~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          109 EQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH  160 (291)
T ss_dssp             HHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred             hcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence            468999999997542  2346778999999999999 899999999998753

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=81.54  E-value=2.7  Score=33.14  Aligned_cols=39  Identities=18%  Similarity=0.224  Sum_probs=27.4

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEec
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC  100 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic  100 (195)
                      ..+||+||++-- ....  -++...+.|+++.++|.-++.+.
T Consensus        48 L~~yDvIIl~d~-~~~~--l~~~~~~~L~~yV~~GGgLi~~g   86 (259)
T 3rht_A           48 LAKQDLVILSDY-PAER--MTAQAIDQLVTMVKAGCGLVMLG   86 (259)
T ss_dssp             HHTCSEEEEESC-CGGG--BCHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HhcCCEEEEcCC-cccc--CCHHHHHHHHHHHHhCCeEEEec
Confidence            358999999742 2222  36677888888888887776663

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*

Probab=80.38  E-value=5.3  Score=35.82  Aligned_cols=59  Identities=20%  Similarity=0.350  Sum_probs=41.8

Q ss_pred             hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHH
Q 029299            4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVI   83 (195)
Q Consensus         4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~   83 (195)
                      |..|.+.|+.|+++++..                                    +..+|++||+|.-.     .-++++.
T Consensus       431 y~aL~~~gi~vD~v~~~~------------------------------------dL~~Yklvv~P~~~-----~~~~~~~  469 (675)
T 3tty_A          431 YDALYKQNIQTDMISVEE------------------------------------DLSKYKVVIAPVMY-----MVKPGFA  469 (675)
T ss_dssp             HHHHHTTTCCEEEECTTS------------------------------------CCTTCSEEEETTCC-----BCCTTHH
T ss_pred             HHHHHHcCceEEEecCcC------------------------------------CcccCCEEEEeccE-----ecCHHHH
Confidence            667788888888887741                                    13579999999753     2367788


Q ss_pred             HHHHHHHhCCCe-EEEecHHH
Q 029299           84 DLVRKFSNSGKT-IASICHGQ  103 (195)
Q Consensus        84 ~~l~~~~~~~k~-i~aic~G~  103 (195)
                      +.|+++.++|.. |++-.+|.
T Consensus       470 ~~L~~yV~~GG~lv~t~~sG~  490 (675)
T 3tty_A          470 ERVERFVAQGGTFVTTFFSGI  490 (675)
T ss_dssp             HHHHHHHHTTCEEEEETTCSC
T ss_pred             HHHHHHHhcCCEEEEEccCCc
Confidence            889999887665 55544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	3e-29
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	7e-26
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	1e-25
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	3e-23
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	3e-22
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	3e-20
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	6e-15
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	4e-14
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	1e-12
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	3e-12
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	3e-11

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (264), Expect = 3e-29
 Identities = 27/171 (15%), Positives = 47/171 (27%), Gaps = 15/171 (8%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNA--TFDEID 58
           ++   A+   G       P K+  DV      ++                       + D
Sbjct: 23  VLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQAD 82

Query: 59  PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
             + D L++PGG                  ++  +  L +    +GK +  +C    +L 
Sbjct: 83  AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLP 142

Query: 108 AADVVKGR-KCTAYPPVKPVLIAAGASWIEPETMAACVV-DGNIITGATYE 156
                  R           VL   GA  +        V  D  I+T   Y 
Sbjct: 143 KIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYM 193

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.6 bits (242), Expect = 7e-26
 Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 35/204 (17%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF------ 54
           + PF      G  VD      K G    +        Q  ++ +  +   N T       
Sbjct: 31  LHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTP 90

Query: 55  DEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---- 109
            E++   Y   +   G    +       + D+  +   +G  +A++CHG  +        
Sbjct: 91  KEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKK 150

Query: 110 ---DVVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAAC--VV 145
               +++G+  T +                     V+ V    GA ++ P        + 
Sbjct: 151 TGRPLIEGKSITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSIT 210

Query: 146 DGNIITGATYEGHPEFIRLFLKAL 169
           DG ++TG             + AL
Sbjct: 211 DGRLVTGVNPASAHSTAVRSIDAL 234

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score = 95.3 bits (236), Expect = 1e-25
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 17/170 (10%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
             P       G  V                     G     +    +  ++ + DE+ P 
Sbjct: 18  TSPADEFRKAGHEVITIEKQA--------------GKTVKGKKGEASVTIDKSIDEVTPA 63

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L +ADV++GRK TA 
Sbjct: 64  EFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAV 123

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG 170
            P+   +  AGA + + E     V    ++T  T +  P F R  L+ LG
Sbjct: 124 KPIIIDVKNAGAEFYDQE---VVVDKDQLVTSRTPDDLPAFNREALRLLG 170

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 89.1 bits (220), Expect = 3e-23
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 20/169 (11%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           + P+  L   G  V  A   +                 T +   G++  ++ TFD+++P 
Sbjct: 17  IYPYHRLKEEGHEVYIASFER----------------GTITGKHGYSVKVDLTFDKVNPE 60

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
           ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  IL +A V++GRK T+Y
Sbjct: 61  EFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSY 120

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 169
           P +K  +I AG  W++    A  VVDGN ++         ++R F+K L
Sbjct: 121 PGIKDDMINAGVEWVD----AEVVVDGNWVSSRVPADLYAWMREFVKLL 165

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 87.6 bits (216), Expect = 3e-22
 Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 26/194 (13%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
            VP+      G  V  A    + G+V       +    +++E         A   + D  
Sbjct: 29  AVPYLVFQEKGYDVKVASI--QGGEVPLDPRSINEKDPSWAEAEAA-LKHTARLSKDDAH 85

Query: 61  KYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA------ADVVK 113
            +D + +PGG    +    N+++  ++++F+  G+ IA++CHG   L          +VK
Sbjct: 86  GFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVK 145

Query: 114 GRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CVVDGNIITGATYEG 157
           G+  T++                 ++  L   GA+++         V DGN+ITG   + 
Sbjct: 146 GKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQS 205

Query: 158 HPEFIRLFLKALGG 171
                   + AL  
Sbjct: 206 SRSTAEKVVAALEE 219

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 83.6 bits (206), Expect = 3e-20
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 30/199 (15%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAV-HQSTGHQTYSETRGHNFAL-----NATF 54
           ++P   L A G   + A            A+ H+      + E     F       +   
Sbjct: 75  LLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVA 134

Query: 55  DEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD--- 110
                ++Y  + +PGG      L  +  V   ++    + + + S+CHG     A     
Sbjct: 135 SLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGD 194

Query: 111 -VVKGRKCTAYPP-------------------VKPVLIAAGASWIEPETMAACVVDGNII 150
             + G    A+P                        L   G + I  +       D  ++
Sbjct: 195 NPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLL 254

Query: 151 TGATYEGHPEFIRLFLKAL 169
           TG +        +L  + +
Sbjct: 255 TGDSPFAANALGKLAAQEM 273

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 67.4 bits (164), Expect = 6e-15
 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 2/128 (1%)

Query: 44  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103
            G     + ++D +DP   D LVIPGG + E       +  LV++F +  + +A IC   
Sbjct: 46  GGLKVTPDTSYDALDPVDIDALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAA 104

Query: 104 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 163
             L    V+     T           A             V DG ++T A       F  
Sbjct: 105 SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAV 163

Query: 164 LFLKALGG 171
             LK+LG 
Sbjct: 164 EILKSLGL 171

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 65.3 bits (158), Expect = 4e-14
 Identities = 20/162 (12%), Positives = 39/162 (24%), Gaps = 19/162 (11%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
              + A+ A         P                  +  +         +         
Sbjct: 20  DAAYAAISANQAIPLVIGP---------------RRSKVTAANGSTVQPHHHLEGFRSTM 64

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 120
                +  G +A E L+ N   +  +R+     K I +      ++A A  +     ++ 
Sbjct: 65  VDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSE 124

Query: 121 PPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 162
             V           ++PE       D   I         EF 
Sbjct: 125 AEVHESYGVVTLKKVKPE----SFTDAVKIAKGAAGFLGEFF 162

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 60.5 bits (146), Expect = 1e-12
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 17/116 (14%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           +   +AL A GV                            +   G    + ATF      
Sbjct: 20  LAILKALKAKGVHAKLLYSR----------------MGEVTADDGTVLPIAATFAGAPSL 63

Query: 61  KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK 116
             D +++P G   + +A N      + +     K IA     +   A   +    +
Sbjct: 64  TVDAVIVPCGNIAD-IADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGE 118

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 60.5 bits (146), Expect = 3e-12
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 23/175 (13%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           +     L+  G+ V  A            +             RG     +A   E+   
Sbjct: 18  VTTIDLLVRGGIKVTTASVASDGNLAITCS-------------RGVKLLADAPLVEVADG 64

Query: 61  KYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICH-GQLILAAADVVKGRKCT 118
           +YD +V+PGG    E    +  +++ V++F  SG+ +A+IC     +L   D+      T
Sbjct: 65  EYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMT 124

Query: 119 AYPPVKPVLIAAGASWIEPETMAACVVDGN--IITGATYEGHPEFIRLFLKALGG 171
            +P +K  + A              V D    ++T        +F    +  L G
Sbjct: 125 GFPTLKDKIPAEQWLD------KRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVG 173

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 3e-11
 Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 20/173 (11%)

Query: 1   MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT 60
           ++P   +   G+ V  A                  G      +R      +A+ ++    
Sbjct: 18  VIPVDVMRRAGIKVTVAGL---------------AGKDPVQCSRDVVICPDASLEDAKKE 62

Query: 61  K-YDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT 118
             YD +V+PGG    + L+ + +V +++++  N    IA+IC G   L A ++  G K T
Sbjct: 63  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 122

Query: 119 AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGG 171
            +P  K  ++          +      DG I+T        EF    ++AL G
Sbjct: 123 THPLAKDKMMNG---GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNG 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	100.0
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.97
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.97
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.97
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.96
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.95
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.91
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.78
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.35
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.31
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.23
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	98.18
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	97.89
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	97.88
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	97.87
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	97.79
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	97.61
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.58
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	97.36
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	97.2
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	97.15
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	96.91
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	96.81
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	96.31
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	96.06
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	95.9
d1kwga3	197	A4 beta-galactosidase middle domain {Thermus therm	90.35
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	90.02
d1t0ba_	240	GK2113 homologue {Bacillus stearothermophilus [Tax	84.23

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.7e-37  Score=233.77  Aligned_cols=148  Identities=39%  Similarity=0.702  Sum_probs=139.2

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS   81 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~   81 (195)
                      .|++.|+++|++|+++|++++                +|+++.|..+.++.++++++..+||+|+||||.++..+..+++
T Consensus        18 ~p~~~l~~ag~~v~~vs~~~~----------------~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~~~~   81 (166)
T d1g2ia_          18 YPYHRLKEEGHEVYIASFERG----------------TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEK   81 (166)
T ss_dssp             HHHHHHHHTTCEEEEEESSSE----------------EEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTCHH
T ss_pred             HHHHHHHHCCCEEEEEeCCCc----------------eEeecCCcEEeccccHHHcCcccccEEEEecccchhhhccChH
Confidence            699999999999999999864                5888999999999999999888999999999988776777899


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHH
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF  161 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~  161 (195)
                      +.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.+++.+..|++.+    +|.|||+|||+|+.++.+|
T Consensus        82 ~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~----vV~Dg~iiTs~g~~~~~~f  157 (166)
T d1g2ia_          82 AVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAE----VVVDGNWVSSRVPADLYAW  157 (166)
T ss_dssp             HHHHHHHHHHTTCCEEEETTTTHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS----CEEETTEEEECSGGGHHHH
T ss_pred             HHHHHHHHHhcCCeeeeccccchhhhhcCcccCCccccCccHHHHHHHcCCeEcCCC----EEEeCCEEECCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999899998765    8999999999999999999


Q ss_pred             HHHHHHHH
Q 029299          162 IRLFLKAL  169 (195)
Q Consensus       162 ~l~li~~l  169 (195)
                      ++++++.|
T Consensus       158 ~~~~i~~L  165 (166)
T d1g2ia_         158 MREFVKLL  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999987

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-37  Score=236.09  Aligned_cols=162  Identities=23%  Similarity=0.346  Sum_probs=140.8

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCC-CCcCEEEEcCCCC-hhhhccC
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP-TKYDGLVIPGGRA-PEYLAMN   79 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~-~~~D~livpGG~~-~~~l~~~   79 (195)
                      .|++.|+++|++|+++|++++               +++++++|..+.+|.+++++.. .+||+|+||||.+ +..+..+
T Consensus        19 ~p~~~l~~ag~~v~~~s~~~~---------------~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l~~~   83 (186)
T d1p5fa_          19 IPVDVMRRAGIKVTVAGLAGK---------------DPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSES   83 (186)
T ss_dssp             HHHHHHHHTTCEEEEEETTCS---------------SCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHHHHC
T ss_pred             HHHHHHHHCCCEEEEEEecCC---------------cceecCCCccccCccchhccCCcccccEEEEecCccccccccch
Confidence            699999999999999999764               2688899999999999987643 5899999999975 5567789


Q ss_pred             hHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHH
Q 029299           80 DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHP  159 (195)
Q Consensus        80 ~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~  159 (195)
                      +.+.+|||++++++|+|+++|+|+++|+++|||+|+++|+||...+.+++.+..+....   .+++|||+|||+|+.++.
T Consensus        84 ~~l~~~lr~~~~~~k~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---~vv~Dg~iiT~~g~~~~~  160 (186)
T d1p5fa_          84 AAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN---RVEKDGLILTSRGPGTSF  160 (186)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCC---SEEEETTEEEECSGGGHH
T ss_pred             HHHHHHHHHhhccccceeecccCcchhhhcCCccccccccchhHHHHHHhcCceEEecc---cEEecCCEEECCCccHHH
Confidence            99999999999999999999999999999999999999999999999988765544443   489999999999999999


Q ss_pred             HHHHHHHHHHcCcc-ccc-cccee
Q 029299          160 EFIRLFLKALGGTI-TGS-DKRIL  181 (195)
Q Consensus       160 ~~~l~li~~l~~~~-a~~-~~~~~  181 (195)
                      +|++++++++.++. +.+ ++.++
T Consensus       161 d~al~li~~l~g~~~a~~va~~l~  184 (186)
T d1p5fa_         161 EFALAIVEALNGKEVAAQVKAPLV  184 (186)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHGGGT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhhc
Confidence            99999999888875 555 44443

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-34  Score=219.43  Aligned_cols=151  Identities=32%  Similarity=0.567  Sum_probs=138.2

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCcccccccc-CcceeeccCCCCCCCCCcCEEEEcCCCChhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR-GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~-g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~   80 (195)
                      .|++.|+++|++|+++|+.++.               ++.++. +.++.+|.+++++++.+||+||||||+++..+..++
T Consensus        19 ~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~~~l~~~~   83 (170)
T d1oi4a1          19 SPADEFRKAGHEVITIEKQAGK---------------TVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDN   83 (170)
T ss_dssp             HHHHHHHHTTCEEEEEESSTTC---------------EEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHTTSH
T ss_pred             HHHHHHHHCCCEEEeccCCCCc---------------eeeeeccCeEEecCCcHHHCChhhceEEEEccchhhhhhccCh
Confidence            5899999999999999997542               456555 489999999999988899999999999887788899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHH
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE  160 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~  160 (195)
                      ++++||+++++++|+|+++|+|+++|+++|+|+||++|+||.....+++.++.|.+.+   .||.||++||++|+.++.+
T Consensus        84 ~~~~~i~~~~~~~k~i~aiC~g~~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~---~VVdd~~liTs~g~~~~~~  160 (170)
T d1oi4a1          84 RFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE---VVVDKDQLVTSRTPDDLPA  160 (170)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS---CEEETTTEEEESSGGGHHH
T ss_pred             HHHHHHHHHhhcCCeeeecccchHHHhhhhhccccccccCchHHHHHHhCCCEEecCC---EEEECCEEEECCChhhHHH
Confidence            9999999999999999999999999999999999999999999999999999998886   3777889999999999999


Q ss_pred             HHHHHHHHHc
Q 029299          161 FIRLFLKALG  170 (195)
Q Consensus       161 ~~l~li~~l~  170 (195)
                      |++++++.|+
T Consensus       161 fa~~~i~~Lg  170 (170)
T d1oi4a1         161 FNREALRLLG  170 (170)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999885

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-35  Score=229.04  Aligned_cols=171  Identities=20%  Similarity=0.394  Sum_probs=147.3

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC-hhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~~~   80 (195)
                      .|++.|+++|++|+++++...+.             .++++++|.++.+|..+++++..+||+||||||.+ +..+..++
T Consensus        19 ~p~d~L~rag~~v~~~s~~~~~~-------------~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~   85 (195)
T d2ab0a1          19 TTIDLLVRGGIKVTTASVASDGN-------------LAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDST   85 (195)
T ss_dssp             HHHHHHHHTTCEEEEEECSSTTC-------------CEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCH
T ss_pred             HHHHHHHHCCCEEEEEEEcCCCC-------------ceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccH
Confidence            69999999999999999865321             36888999999999999998888999999999975 45677899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHH-HHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCC--eEeCCCCCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN--IITGATYEG  157 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~-~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~--iiT~~g~~~  157 (195)
                      .+.+|||++++++|+|+++|+|+ ++|+++|||+|+++|+||...+.+.  +..|.+.+    +++|||  +|||+|+++
T Consensus        86 ~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~--~~~~~~~~----vv~Dgn~~liTa~g~~a  159 (195)
T d2ab0a1          86 LLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP--AEQWLDKR----VVWDARVKLLTSQGPGT  159 (195)
T ss_dssp             HHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSC--TTTBCCCS----EEEETTTTEEEECSGGG
T ss_pred             HHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcc--cceEeecc----eEEECCCeEEECCCHHH
Confidence            99999999999999999999995 8899999999999999998665442  45666554    889986  699999999


Q ss_pred             HHHHHHHHHHHHcCcc-ccc-ccceeeeccCccccc
Q 029299          158 HPEFIRLFLKALGGTI-TGS-DKRILFLCGVSFCFQ  191 (195)
Q Consensus       158 ~~~~~l~li~~l~~~~-a~~-~~~~~~~~~~~~~~~  191 (195)
                      +++|++++|+++.++. +++ ++.++|..+...||+
T Consensus       160 ~~d~al~lie~l~g~e~A~~va~~l~~~~~~~~~~~  195 (195)
T d2ab0a1         160 AIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE  195 (195)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTTCCTTSCCCCC
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHhcCCcchhhhcC
Confidence            9999999999998875 566 888888888877764

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=2.4e-32  Score=214.38  Aligned_cols=169  Identities=22%  Similarity=0.386  Sum_probs=137.4

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hhhccC
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMN   79 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~l~~~   79 (195)
                      ++||++|+++|++|+++||.|++......+...   ...........+..+..+++++..+||+||||||+++ .++..+
T Consensus        29 ~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~---~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~  105 (221)
T d1u9ca_          29 AVPYLVFQEKGYDVKVASIQGGEVPLDPRSINE---KDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDN  105 (221)
T ss_dssp             HHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSS---CCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTC
T ss_pred             HHHHHHHHHCCCEEEEEecCCCcceeccCcccc---ccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhh
Confidence            379999999999999999998763322222111   1122223345677788888888899999999999986 458899


Q ss_pred             hHHHHHHHHHHhCCCeEEEecHHHHHHHhCC------CCCCceEecCCC---------------chHHHHHCCCeeecCC
Q 029299           80 DSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPP---------------VKPVLIAAGASWIEPE  138 (195)
Q Consensus        80 ~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG------lL~g~~~T~~~~---------------~~~~l~~~g~~~~~~~  138 (195)
                      +.+.++++++++++|+|++||+|+++|+.++      |++||++|+|+.               ..+.+++.|+.|.+..
T Consensus       106 ~~l~~li~~~~~~~k~iaAIChgp~~l~~a~~~~g~~ll~Gk~~T~~p~~~e~~~~~~~~~p~~~~~~l~~~Ga~y~~~~  185 (221)
T d1u9ca_         106 ETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGG  185 (221)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHHHHTCGGGSSSCHHHHHHHTTCEECCCS
T ss_pred             HHHHHHHHHHHhccCcceeecccceeeeccccCCCCceeCCceeeccCCHHHhhcccccchhhhHHHHHHHCCCEEeecC
Confidence            9999999999999999999999999999864      899999999865               4456778899998765


Q ss_pred             Cc-ceEEEcCCeEeCCCCCCHHHHHHHHHHHHcCc
Q 029299          139 TM-AACVVDGNIITGATYEGHPEFIRLFLKALGGT  172 (195)
Q Consensus       139 ~~-~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~~  172 (195)
                      .+ ..+++|||+||++|+.++.+|++.+++.|..+
T Consensus       186 ~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         186 KWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             TTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence            32 46999999999999999999999999988654

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.97  E-value=6.1e-32  Score=207.21  Aligned_cols=148  Identities=26%  Similarity=0.385  Sum_probs=125.1

Q ss_pred             chhHHHHh-CCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccCh
Q 029299            2 VPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~-~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~   80 (195)
                      .+...|++ +|++|+++|++++                +|++++|..+.+|..+++++..+||+|+||||.+... ..++
T Consensus        19 ~~~~~l~~~~g~~v~~vs~~~~----------------~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~-~~~~   81 (188)
T d2fexa1          19 LLAAAARSYLGVEIVHATPDGM----------------PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEK-GTAA   81 (188)
T ss_dssp             HHHHHHHHHSCCEEEEEETTSS----------------CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHH-TCCC
T ss_pred             HHHHHHhhcCCcEEEEEeCCCC----------------cEEcCCCCEEeecCchHHCChhhccEEEecCCccccc-cccH
Confidence            35677876 8999999999875                4889999999999999999888999999999987654 4577


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHH-HHHC--CCeeecCCCcceEEEcCCeEeCCCCCC
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV-LIAA--GASWIEPETMAACVVDGNIITGATYEG  157 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~-l~~~--g~~~~~~~~~~~~v~Dg~iiT~~g~~~  157 (195)
                      .+.+|||++++++++|+++|+|+++||++|||+|+++|+||..... +..+  +..+.+.+   .+|.|||+|||+| ++
T Consensus        82 ~l~~~lr~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~---~vV~DgnliTs~G-~a  157 (188)
T d2fexa1          82 DLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQP---RAVSDGGVVTAAG-SA  157 (188)
T ss_dssp             CCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCS---SCEEETTEEEECT-TC
T ss_pred             HHHHHHHHHHHhCCEEEEecchhHHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCC---EEEECCCEEECCC-ch
Confidence            8999999999999999999999999999999999999999754333 3332  23344443   4899999999988 68


Q ss_pred             HHHHHHHHHHHHc
Q 029299          158 HPEFIRLFLKALG  170 (195)
Q Consensus       158 ~~~~~l~li~~l~  170 (195)
                      ++||++++++.|+
T Consensus       158 a~d~al~ii~~L~  170 (188)
T d2fexa1         158 PVSFAVEILKSLG  170 (188)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999985

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-31  Score=210.59  Aligned_cols=170  Identities=19%  Similarity=0.286  Sum_probs=134.6

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCcc------ccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ------TYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE   74 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~------~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~   74 (195)
                      ++||++|+++|++|+++||+|+++....++.......+      ......+..+..+.++++++..+||+|++|||+++.
T Consensus        31 ~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ydav~ipGG~g~~  110 (236)
T d1qvwa_          31 LHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTL  110 (236)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGCSEEEECCSTTHH
T ss_pred             HHHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHHHHHhcccChhhCCHhHCCEEEEeCCccch
Confidence            37999999999999999998875321111111111100      011112346778889999999999999999999974


Q ss_pred             -hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC-------CCCCCceEecCCC-------------------chHHH
Q 029299           75 -YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPP-------------------VKPVL  127 (195)
Q Consensus        75 -~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a-------GlL~g~~~T~~~~-------------------~~~~l  127 (195)
                       ++.+++.+.++|+++++++|+|++||||+.+|+.+       ++++||++|+|+.                   .++.+
T Consensus       111 ~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~~~~~~g~~ll~Gk~vT~f~~~ee~~~~~~~~~~~~~~~~le~~l  190 (236)
T d1qvwa_         111 FDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNLATVEDVA  190 (236)
T ss_dssp             HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTCSBTTTTCEECCSCHHHHHHTTCHHHHHHTTCCCHHHHH
T ss_pred             hcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHHhhcccccccccCceeccCCcHHHhhccccccccCCCcccHHHHH
Confidence             48899999999999999999999999999998876       6999999999964                   34567


Q ss_pred             HHCCCeeecCC-C-cceEEEcCCeEeCCCCCCHHHHHHHHHHHHc
Q 029299          128 IAAGASWIEPE-T-MAACVVDGNIITGATYEGHPEFIRLFLKALG  170 (195)
Q Consensus       128 ~~~g~~~~~~~-~-~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~  170 (195)
                      ++.|+.|.+.. . ...+|+|||+||++++.|+..+++.+++.|.
T Consensus       191 ~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         191 KKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             HHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             HHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            77899998754 2 2579999999999999999999999999764

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.3e-30  Score=209.70  Aligned_cols=171  Identities=17%  Similarity=0.225  Sum_probs=129.4

Q ss_pred             CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCC-CCccccccccCcceeeccCC-----CCCCCCCcCEEEEcCCCCh-
Q 029299            1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQS-TGHQTYSETRGHNFALNATF-----DEIDPTKYDGLVIPGGRAP-   73 (195)
Q Consensus         1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~-~~~~~v~~~~g~~i~~~~~~-----~~~~~~~~D~livpGG~~~-   73 (195)
                      ++||++|+++||+|+++||+|++.....++.... ...+.........+..+..+     +..+..+||+||+|||+|+ 
T Consensus        75 ~~P~~~l~~AG~eVdiASp~G~~~~~D~~s~~~~d~~~~~~~~~~~~~~~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~  154 (279)
T d1n57a_          75 LLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGAL  154 (279)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGG
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCcCccccccccHHHHHHHHhHHHHHhCchhhhhhhhcccccccccEEEecCCccch
Confidence            3799999999999999999998754433443221 11011111111112222222     2234468999999999986 


Q ss_pred             hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC----CCCCCceEecCCC-------------------chHHHHHC
Q 029299           74 EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA----DVVKGRKCTAYPP-------------------VKPVLIAA  130 (195)
Q Consensus        74 ~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a----GlL~g~~~T~~~~-------------------~~~~l~~~  130 (195)
                      .++.+++.+.++|+++++++|+|++||||+..|..+    ++++||++|+|++                   ..+.+++.
T Consensus       155 ~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~vT~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~  234 (279)
T d1n57a_         155 IGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKM  234 (279)
T ss_dssp             SSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeEEeecCCHHHhccchhccCcccccccHHHHHHHc
Confidence            458899999999999999999999999999999877    6999999999864                   35678888


Q ss_pred             CCeeecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcC
Q 029299          131 GASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGG  171 (195)
Q Consensus       131 g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~  171 (195)
                      |+.|.+.+....+++|||+||++++.++..+++.+++.|-.
T Consensus       235 Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~  275 (279)
T d1n57a_         235 GMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLA  275 (279)
T ss_dssp             TCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHH
T ss_pred             CCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHH
Confidence            99998765445799999999999999999999999987643

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.95  E-value=3.6e-30  Score=196.00  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=128.0

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC-hhhhccCh
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMND   80 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~~~   80 (195)
                      .|++.|+++|++++++++.++                +++++.|..+.++.++++.+..+||++++|||.+ ...+..++
T Consensus        21 ~~~~~l~~ag~~v~ivs~~~~----------------~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~~~~   84 (184)
T d1sy7a1          21 AAYAAISANQAIPLVIGPRRS----------------KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNG   84 (184)
T ss_dssp             HHHHHHHHTTCEEEEEESCSS----------------CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCEEEEEEecCC----------------cccccccccccccccccccccccceEEEEeecccccccccccc
Confidence            589999999999999999875                4788999999999999998888999999999964 45577899


Q ss_pred             HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHH
Q 029299           81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE  160 (195)
Q Consensus        81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~  160 (195)
                      .+.+||+++++++|+|++||+|+++|+++|+|+|+++|+||...+.+...+..+...    .++.||+++|++++....+
T Consensus        85 ~~~~~l~~~~~~~k~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~----~~v~dg~~it~~~~~~~~~  160 (184)
T d1sy7a1          85 RALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKP----ESFTDAVKIAKGAAGFLGE  160 (184)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCT----TTTTSCCCCSTTCSSHHHH
T ss_pred             chhHHHHHHHhcCCceEEechHHHHHHHcCCCCCceeccCcchhhhhccccceeccC----ceEeECCEEecCCHhHHHH
Confidence            999999999999999999999999999999999999999999876665434444444    3789999999999988889


Q ss_pred             HHHHHHH
Q 029299          161 FIRLFLK  167 (195)
Q Consensus       161 ~~l~li~  167 (195)
                      |+..+.+
T Consensus       161 f~~~i~~  167 (184)
T d1sy7a1         161 FFYAIAQ  167 (184)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9888875

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=9.2e-25  Score=170.12  Aligned_cols=152  Identities=18%  Similarity=0.226  Sum_probs=111.8

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccC--CCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hhh--
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQ--STGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYL--   76 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~--~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~l--   76 (195)
                      .||+.|+|+|++|+++||++++.+...-....  ...+.......++....+.++++++..+||+||+|||++. .++  
T Consensus        24 ~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v~~~~yDaliiPGG~g~~~~l~~  103 (217)
T d1vhqa_          24 LTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSN  103 (217)
T ss_dssp             HHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBC
T ss_pred             HHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHCCHhHCCEEEecCCcccHHHHhh
Confidence            69999999999999999988753321100000  0000111123344455667788888899999999999975 333  


Q ss_pred             --------ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEec-CCCchHHHHHCCCeeecCCCcceEEE-c
Q 029299           77 --------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA-YPPVKPVLIAAGASWIEPETMAACVV-D  146 (195)
Q Consensus        77 --------~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~-~~~~~~~l~~~g~~~~~~~~~~~~v~-D  146 (195)
                              ..++.+.++|++|++++|+|++||+|+++|++++.+.+++.++ |+...+.+++.|+.|++.+.+..+|. |
T Consensus       104 ~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~~~~~~~~~~~~~~~~l~~~Ga~~v~~~~~~~vVD~d  183 (217)
T d1vhqa_         104 FASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDED  183 (217)
T ss_dssp             HHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCCEECCCSCHHHHHHHHHTTCEECCCCTTCCEEETT
T ss_pred             hhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhccCCCeeeccChhhHHHHHHcCCcEEeccCCeEEEecC
Confidence                    3368899999999999999999999999999998888875554 56677888999999998764333332 4


Q ss_pred             CCeEeCC
Q 029299          147 GNIITGA  153 (195)
Q Consensus       147 g~iiT~~  153 (195)
                      ||+||+.
T Consensus       184 g~ivTsp  190 (217)
T d1vhqa_         184 NKIVTTP  190 (217)
T ss_dssp             TTEEEEC
T ss_pred             CCEEccc
Confidence            9999984

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.78  E-value=8.2e-20  Score=135.03  Aligned_cols=98  Identities=18%  Similarity=0.196  Sum_probs=89.5

Q ss_pred             chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299            2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS   81 (195)
Q Consensus         2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~   81 (195)
                      .|++.|.++|+++++++++.+                ++++++|..+.++.++++.+..+||+|+||||.+.. +..++.
T Consensus        21 ~~~~~l~~ag~~v~~v~~~~~----------------~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~~-l~~~~~   83 (156)
T d1p80a1          21 AILKALKAKGVHAKLLYSRMG----------------EVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIAD-IADNGD   83 (156)
T ss_dssp             HHHHHHHHHTCEEEEEESSSS----------------EEECTTSCEEECCEETTTSCGGGCSEEEECCSCTHH-HHTCHH
T ss_pred             HHHHHHHHCCCEEEEEecccc----------------cccccceeEEeeeeeeccCCcccCCEEEeeCCchHH-HhcchH
Confidence            589999999999999999865                477889999999999999888899999999997654 678999


Q ss_pred             HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCce
Q 029299           82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK  116 (195)
Q Consensus        82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~  116 (195)
                      +++||+++++++|+|+++|+|+++|+.+|+++++.
T Consensus        84 ~~~~i~e~~~~~K~I~aic~g~~~La~agl~~~~~  118 (156)
T d1p80a1          84 ANYYLMEAYKHLKPIALAGDARKFKATIKIADQGE  118 (156)
T ss_dssp             HHHHHHHHHHTTCCEEEEGGGGGGGGTTTCCSSCC
T ss_pred             HHHHHHHHHHcCCeEEEECchHHHHHHcCCCcCCC
Confidence            99999999999999999999999999999998753

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.35  E-value=1.5e-07  Score=70.68  Aligned_cols=50  Identities=30%  Similarity=0.638  Sum_probs=40.6

Q ss_pred             CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||...  ........+.++|+++.++++|+.+||.|.++|++.
T Consensus        42 ~~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~~~   93 (202)
T d1q7ra_          42 EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR   93 (202)
T ss_dssp             TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             hcCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehhhHHhhhh
Confidence            57999999998642  222344567899999999999999999999999864

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.31  E-value=2.1e-07  Score=69.54  Aligned_cols=50  Identities=32%  Similarity=0.654  Sum_probs=40.2

Q ss_pred             CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||+|||...  ........+.++|+++.++++|+.+||.|.++|++.
T Consensus        37 ~~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~   88 (195)
T d2nv0a1          37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (195)
T ss_dssp             GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             hhCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccccHHHHHhh
Confidence            46899999998542  223344457788999999999999999999999885

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.23  E-value=6.4e-07  Score=69.97  Aligned_cols=56  Identities=20%  Similarity=0.346  Sum_probs=41.5

Q ss_pred             CCCcCEEEEcCCCChhh-----------hccChHHHHHHHHHHh-CCCeEEEecHHHHHHHhCC-CCCC
Q 029299           59 PTKYDGLVIPGGRAPEY-----------LAMNDSVIDLVRKFSN-SGKTIASICHGQLILAAAD-VVKG  114 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~-----------l~~~~~l~~~l~~~~~-~~k~i~aic~G~~lLa~aG-lL~g  114 (195)
                      ..+||+|++|||++..+           ...+..+...+.+++. .++++.+||+|.++|.+.| |+.|
T Consensus        49 L~~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg  117 (262)
T d1t3ta2          49 LGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPG  117 (262)
T ss_dssp             GGGCSEEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTT
T ss_pred             ccccceEEEeccccccccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCC
Confidence            46899999999975321           1234555666666665 5899999999999999985 5554

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=1.8e-06  Score=66.11  Aligned_cols=50  Identities=20%  Similarity=0.315  Sum_probs=40.4

Q ss_pred             CCcCEEEEcCCCC-hhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~-~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||+|||+||+. +..   ......+.++|++..++++|+.+||.|.++|+.+
T Consensus        47 ~~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a  100 (230)
T d1o1ya_          47 EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  100 (230)
T ss_dssp             GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hhCCEEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHH
Confidence            4699999999864 321   1223567899999999999999999999999986

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=7e-06  Score=62.70  Aligned_cols=53  Identities=25%  Similarity=0.427  Sum_probs=43.4

Q ss_pred             CCCCCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           55 DEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        55 ~~~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      +++...++|+||+.||+|-..  +.....+.++++.+.+.||.|||-|.++|+.+
T Consensus        74 ~~i~~~~pdgivlS~GPg~P~--~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~  126 (228)
T d1a9xb2          74 EDVLKMNPDGIFLSNGPGDPA--PCDYAITAIQKFLETDIPVFGICLGHQLLALA  126 (228)
T ss_dssp             HHHHTTCCSEEEECCCSBCST--TCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEeCCCCccc--cchhHHHHHHHHHhCCCCEEEEEcChHHHHHH
Confidence            333335799999999987532  45678889999999999999999999999986

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.88  E-value=9.2e-06  Score=60.31  Aligned_cols=49  Identities=24%  Similarity=0.352  Sum_probs=37.6

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+||.||++||.+... .....+..+++...++++|+.+||.|.++|+.+
T Consensus        41 ~~~dgiIl~Gg~~~~~-~~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~   89 (196)
T d2a9va1          41 DGLDGLVLSGGAPNID-EELDKLGSVGKYIDDHNYPILGICVGAQFIALH   89 (196)
T ss_dssp             TTCSEEEEEEECSCGG-GTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHH
T ss_pred             hcCCcEEEeccccccc-cccchhhhHHHHHhhcCceEEEeehhhhhhhhc
Confidence            5799999999865322 123445666666677899999999999999986

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.87  E-value=3.2e-06  Score=62.74  Aligned_cols=49  Identities=22%  Similarity=0.230  Sum_probs=36.7

Q ss_pred             CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ++|.|++.||++...-..+.....++.+..++++|+.+||-|.++|+.+
T Consensus        45 ~~~gvilsgGp~~~~~~~~~~~~~~i~~~~~~~~PiLGIClG~Qll~~~   93 (195)
T d1qdlb_          45 DPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             CCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHH
T ss_pred             CCCccccCCCCCccccccccccchhhhhhhcCCCCEEEeehhhhhhhhc
Confidence            5799999999764221122234456777888999999999999999986

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.79  E-value=9.9e-06  Score=59.49  Aligned_cols=47  Identities=19%  Similarity=0.417  Sum_probs=39.1

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      -.+|.|+++||.+..   .......++++..+.++|+.+||.|.++|+.+
T Consensus        42 ~~~~gvilsgg~~~~---~~~~~~~~i~~~~~~~~PiLGIClG~Q~l~~~   88 (188)
T d1wl8a1          42 MNPKGIIFSGGPSLE---NTGNCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (188)
T ss_dssp             TCCSEEEECCCSCTT---CCTTHHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             hccceeeeccCcccc---cccccccccccccccccceeehhhhhhhhhhh
Confidence            357999999987643   34457788899999999999999999999975

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.58  E-value=1.1e-05  Score=59.82  Aligned_cols=49  Identities=33%  Similarity=0.605  Sum_probs=38.9

Q ss_pred             CCcCEEEEcC-CC-Ch--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPG-GR-AP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpG-G~-~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+|.||+|| |. +.  ..+ ....+.+.|+++.++++||.+||.|.++|+..
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~   93 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQLLFEE   93 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHHTTEEE
T ss_pred             hccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEecceeEEeee
Confidence            5799999998 53 21  223 34467899999999999999999999999864

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=97.36  E-value=3.1e-05  Score=57.22  Aligned_cols=47  Identities=15%  Similarity=0.170  Sum_probs=36.3

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|+|++.||++....   .....++++..++++|+.+||-|.++|+.+
T Consensus        46 ~~~~~iils~Gpg~~~~---~~~~~~i~~~l~~~iPiLGIClG~Q~la~~   92 (192)
T d1i7qb_          46 MEQPVLMLSPGPGTPSE---AGCMPELLQRLRGQLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             CSSEEEEECCCSSCGGG---STTHHHHHHHHBTTBCEEEETHHHHHHHHH
T ss_pred             cCCCeEEecCccccccc---cccchhhHHhhhcCccEEeeeHHHHHHHHH
Confidence            36899999888875432   222445778889999999999999999986

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.20  E-value=9.2e-05  Score=55.19  Aligned_cols=50  Identities=32%  Similarity=0.519  Sum_probs=34.1

Q ss_pred             CCcCEEEEcCCCChh----hhccChHHHHHHHHH-HhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE----YLAMNDSVIDLVRKF-SNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~----~l~~~~~l~~~l~~~-~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.||||||....    .+.....+.+.|.++ ..+++||.+||.|.++|++.
T Consensus        41 ~~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~   95 (218)
T d2abwa1          41 GLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   95 (218)
T ss_dssp             HTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             hhCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHh
Confidence            579999999974321    121223344445554 45799999999999999875

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.00047  Score=49.91  Aligned_cols=50  Identities=24%  Similarity=0.351  Sum_probs=39.0

Q ss_pred             CCcCEEEEcCCCChh---hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~---~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .++|.+|+||+....   .......+...+......++|+.++|.|.++|+..
T Consensus        37 ~~~d~lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiClG~qll~~~   89 (195)
T d1ka9h_          37 EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   89 (195)
T ss_dssp             SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             HHHhhhhcCCCccccchhhhccccCCcccccccccccchhhhhhhhhheeeec
Confidence            468999999986532   22334456678888999999999999999999864

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=5.5e-05  Score=56.19  Aligned_cols=47  Identities=15%  Similarity=0.321  Sum_probs=34.5

Q ss_pred             CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      ..+|.+++.||++...   +.....++++..+.++|+.|||-|.++|+.+
T Consensus        47 ~~~~giils~gp~~~~---~~~~~~~~~~~~~~~~PiLGIClG~Qlla~~   93 (205)
T d1gpma2          47 FNPSGIILSGGPESTT---EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQ   93 (205)
T ss_dssp             HCCSEEEECCCSSCTT---STTCCCCCGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             cCCCeEEecCCCCccc---hhhhhhHHHHHHhCCCCEEEeccchhhhhhh
Confidence            3679999999986421   1112234556678899999999999999986

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.001  Score=51.02  Aligned_cols=46  Identities=20%  Similarity=0.311  Sum_probs=38.4

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHH
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  107 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa  107 (195)
                      ..++|.|+||||+|.+   ..+-.+..++-+.+++.|..+||.|.+++.
T Consensus        55 L~~~dGIlvPGGFG~R---G~eGki~ai~yARen~iPfLGIClGmQ~av  100 (258)
T d1s1ma1          55 LKGLDAILVPGGFGYR---GVEGMITTARFARENNIPYLGICLGMQVAL  100 (258)
T ss_dssp             TTTCSEEEECCCCSST---THHHHHHHHHHHHHTTCCEEEETHHHHHHH
T ss_pred             ccccccEEeecccCcC---CHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence            4689999999999854   244567788888999999999999999853

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.31  E-value=0.0028  Score=48.24  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHH
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  106 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lL  106 (195)
                      ..++|.|+||||+|.+.   -+--+..++-+.+++.|..+||.|.++.
T Consensus        56 L~~~dGIlvPGGFG~rG---~eGki~ai~yARen~iPfLGIClGmQ~a  100 (250)
T d1vcoa1          56 FRDVSGILVPGGFGVRG---IEGKVRAAQYARERKIPYLGICLGLQIA  100 (250)
T ss_dssp             TTTCSCEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             HhcCCeEEecCCCCccc---hHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence            46799999999998543   2345666888889999999999999975

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0019  Score=50.23  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             CcCEEEEcCCCCh---hh-hccChHHHHHHHHHHh--CCCeEEEecHHHHHHHhC
Q 029299           61 KYDGLVIPGGRAP---EY-LAMNDSVIDLVRKFSN--SGKTIASICHGQLILAAA  109 (195)
Q Consensus        61 ~~D~livpGG~~~---~~-l~~~~~l~~~l~~~~~--~~k~i~aic~G~~lLa~a  109 (195)
                      ..|.|++|||...   .. ....+.+.++......  ++.||.|||.|..+|+.+
T Consensus        59 ~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~  113 (288)
T d1l9xa_          59 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  113 (288)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             hcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHH
Confidence            4699999999642   11 1122344444444444  456999999999999764

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=95.90  E-value=0.0018  Score=50.34  Aligned_cols=57  Identities=21%  Similarity=0.335  Sum_probs=44.7

Q ss_pred             CCCCCCCCCcCEEEEcCCCC-hh---hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           53 TFDEIDPTKYDGLVIPGGRA-PE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        53 ~~~~~~~~~~D~livpGG~~-~~---~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      +++++...+||++||-|++. ..   ....-+++.++++...++.+.+.+||-|..+++.+
T Consensus        75 ~~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~  135 (281)
T d2ghra1          75 TFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  135 (281)
T ss_dssp             CHHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             hHHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHH
Confidence            44555557899999999863 21   22234789999999999999999999999998876

>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: A4 beta-galactosidase middle domain
domain: A4 beta-galactosidase middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.35  E-value=0.4  Score=34.45  Aligned_cols=56  Identities=23%  Similarity=0.386  Sum_probs=38.0

Q ss_pred             hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHH
Q 029299            4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVI   83 (195)
Q Consensus         4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~   83 (195)
                      |..|.+.|..|||++|+.                                    +.++|.+||+|+-+-.     +++  
T Consensus        38 Y~al~~~gv~vDiv~~~~------------------------------------dls~Yklvv~P~l~~~-----~~~--   74 (197)
T d1kwga3          38 YSALRRLGLDVDVVPPGA------------------------------------SLRGYAFAVVPSLPIV-----REE--   74 (197)
T ss_dssp             HHHHHTTTCCEEEECTTS------------------------------------CCTTCSEEEESCCSSC-----CHH--
T ss_pred             HHHHHHcCCceeecCCCC------------------------------------CcccCCEEEEcchHhC-----CHH--
Confidence            678999999999998852                                    1357999999985422     333  


Q ss_pred             HHHHHHHhC-CCeEEEecHHH
Q 029299           84 DLVRKFSNS-GKTIASICHGQ  103 (195)
Q Consensus        84 ~~l~~~~~~-~k~i~aic~G~  103 (195)
                       +++++.++ |+.|.+-.+|.
T Consensus        75 -~l~~~v~~GG~lv~g~rsG~   94 (197)
T d1kwga3          75 -ALEAFREAEGPVLFGPRSGS   94 (197)
T ss_dssp             -HHHHHHTCSSCEEECTTTTC
T ss_pred             -HHHHHHHCCCEEEEeccCcc
Confidence             35555554 56676666653

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.02  E-value=0.068  Score=39.70  Aligned_cols=50  Identities=10%  Similarity=0.146  Sum_probs=40.0

Q ss_pred             CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299           60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  109 (195)
Q Consensus        60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a  109 (195)
                      .+.|+|++.||.-..  .......+.+.|++.+++|+++++...|+.++...
T Consensus        78 ~~ad~I~v~GGn~~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v~~~~  129 (229)
T d1fyea_          78 EKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT  129 (229)
T ss_dssp             HHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred             hhCCEEEEcCCCHHHHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHhhcCcc
Confidence            568999999997532  12345568899999999999999999999988743

>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: ThuA-like
domain: GK2113 homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.23  E-value=0.78  Score=33.76  Aligned_cols=44  Identities=23%  Similarity=0.276  Sum_probs=31.4

Q ss_pred             CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299           59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL  104 (195)
Q Consensus        59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~  104 (195)
                      +.+||+||+-+-.+...  -+++-.+-|.++.++|+.++++=+|+.
T Consensus        60 L~~~Dvli~~~~~~~~~--l~~~q~~al~~~v~~G~G~VglH~a~~  103 (240)
T d1t0ba_          60 LDRCDVLVWWGHIAHDE--VKDEVVERVHRRVLEGMGLIVLHSGHF  103 (240)
T ss_dssp             HHTCSEEEEECSSCGGG--SCHHHHHHHHHHHHTTCEEEEEGGGGG
T ss_pred             HhcCCEEEEeCCCCCCc--CCHHHHHHHHHHHHcCCCEEEEecCcC
Confidence            36799998865333322  356667778889999999999877754