Citrus Sinensis ID: 029301

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccHHHcccccccccEEEcccccccccccccccccccccccccEEEEEcccccHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEcccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccHHHHcccccccEEEEEcccccccccHHHHHHHHHHcccccEEEEEEEcccEEEEEEEEcccccccccccEEEcc
Coil and Loop (DISEMBL)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRlsqsngpglsgnlvdsegfprtdidiHLVRSErrrlagddggsnnqnpsilgtvqsasfnnavprnspaamdvdviirrpfavideitdaspaaedglqlGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGglinlavtprpwqgrgllgchfrml
Flexible Loop (DISEMBL)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLsgnlvdsegfprtDIDIHLVRSERRrlagddggsnnqnPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAegrknqgnaVPVVIMRQGGLInlavtprpwqgrgllgchfrml
Low Complexity Region (SEG)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Disordered region (IsUnstruct)
******************************************************DIH******************************************AMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF***
Disordered Region (DISOPRED)
*********IMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGDDGGSNNQNPSILGTVQ***********************RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Disordered Region (DISEMBL)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Disordered Region (DISPRO)
**GTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGDDGGSNNQNPSILGTVQSASFNNA**************IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q9WTV5	222	26S proteasome non-ATPase	yes	no	0.912	0.801	0.284	6e-18
O00233	223	26S proteasome non-ATPase	yes	no	0.928	0.811	0.272	2e-17
Q3SZ19	221	26S proteasome non-ATPase	yes	no	0.928	0.819	0.27	3e-17
Q9CR00	222	26S proteasome non-ATPase	yes	no	0.912	0.801	0.274	4e-17
P40555	220	Probable 26S proteasome r	yes	no	0.943	0.836	0.283	5e-14
Q552Y8	262	Probable 26S proteasome n	yes	no	0.928	0.690	0.257	1e-12
O94393	213	Probable 26S proteasome r	yes	no	0.897	0.821	0.298	7e-12
Q10920	197	Probable 26S proteasome n	yes	no	0.861	0.852	0.244	3e-11

>sp|Q9WTV5|PSMD9_RAT 26S proteasome non-ATPase regulatory subunit 9 OS=Rattus norvegicus GN=Psmd9 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 26/204 (12%)

Query: 8   AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRR-- 65
           ++I  LM ++  +EA + A  D L    G G++  LVD EG+PR D+D++ VR+ R    
Sbjct: 21  SDIQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80

Query: 66  -LAGDDGGSNNQNPSILGTVQS---------------ASFNNAVPRNSPAAMDVDVIIRR 109
            L  D      Q    L  + +                + N  +  +SPA       + +
Sbjct: 81  CLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASDSPA-------LPK 133

Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMR 168
            FA ++ I+  SPA+  GLQ+ D++++FG+V   +   L+ +    + ++G  + V+++R
Sbjct: 134 AFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNVGTVVQHSEGKPLNVMVIR 193

Query: 169 QGGLINLAVTPRPWQGRGLLGCHF 192
           +G    L +TP  W G+GLLGC+ 
Sbjct: 194 RGEKHQLRLTPTRWAGKGLLGCNI 217

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.
Rattus norvegicus (taxid: 10116)

>sp|O00233|PSMD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=3

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 21/202 (10%)

Query: 8   AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
           +++  LM ++  +EA + A  D L    G G++  LVD EG+PR+D+D++ VR+ R  + 
Sbjct: 21  SDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNII 80

Query: 68  GDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDV-----DVIIR-----------RPF 111
                  N + +++  V+ A            A D+     + + R           R F
Sbjct: 81  ----CLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSESQGPPRAF 136

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQG 170
           A ++ I+  SPA+  GLQ+ D++++FG+V   +   L  + +  + ++G  + V ++R+G
Sbjct: 137 AKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRG 196

Query: 171 GLINLAVTPRPWQGRGLLGCHF 192
               L + P  W G+GLLGC+ 
Sbjct: 197 EKHQLRLVPTRWAGKGLLGCNI 218

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.

Homo sapiens (taxid: 9606)

>sp|Q3SZ19|PSMD9_BOVIN 26S proteasome non-ATPase regulatory subunit 9 OS=Bos taurus GN=PSMD9 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 100/200 (50%), Gaps = 19/200 (9%)

Query: 8   AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
           +++  L+ ++  +EA + A  + L    G G++  LVD EG+PR D+D++ VR+ R  + 
Sbjct: 21  SDVQELIRRKEEIEAQIKANYEVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIV 80

Query: 68  GDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIR--------------RPFAV 113
                  N + +++  V+ A            A D+    R              + FA 
Sbjct: 81  ----CLQNDHKAVMKQVEDALHQLHARDKEKQARDLAEAHREALSRDQSQGLSPAQAFAK 136

Query: 114 IDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGL 172
           ++ I+  SPA+  GLQ+ D++L+FG+V   +   L+ + +  + ++G  + V +MR+G  
Sbjct: 137 VNSISPGSPASIAGLQVDDEILEFGSVNTQNFQSLQNIGSVVQHSEGKPLNVTVMRRGEK 196

Query: 173 INLAVTPRPWQGRGLLGCHF 192
             L + P  W G+GLLGC+ 
Sbjct: 197 HQLRLVPTRWAGKGLLGCNI 216

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.

Bos taurus (taxid: 9913)

>sp|Q9CR00|PSMD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus GN=Psmd9 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 26/204 (12%)

Query: 8   AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRR-- 65
           ++I  LM ++  +EA++ A  D L    G G++  LVD EG+PR D+D++ VR+ R    
Sbjct: 21  SDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80

Query: 66  -LAGDDGGSNNQNPSILGTVQS---------------ASFNNAVPRNSPAAMDVDVIIRR 109
            L  D      Q    L  + +                + N  +  NSP       ++ +
Sbjct: 81  CLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASNSP-------VLPQ 133

Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMR 168
            FA ++ I+  SPA+  GLQ+ D++++FG+V   +   ++ +    + ++G  + V ++R
Sbjct: 134 AFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIR 193

Query: 169 QGGLINLAVTPRPWQGRGLLGCHF 192
           +G    L + P  W G+GLLGC+ 
Sbjct: 194 RGEKHQLRLIPTRWAGKGLLGCNI 217

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.

Mus musculus (taxid: 10090)

>sp|P40555|PSMD9_YEAST Probable 26S proteasome regulatory subunit p27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAS2 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 10/194 (5%)

Query: 9   EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRR--L 66
           ++  LM  ++ +E  + A    L Q  G G+   LV  +G+PR+D+D+  V   R+   +
Sbjct: 30  KLSELMVLKTDIETQLEAYFSVLEQQ-GIGMDSALVTPDGYPRSDVDVLQVTMIRKNVNM 88

Query: 67  AGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVD---VIIRRPFAVIDEITDASPA 123
             +D     Q   +L      + N  V  N  A  + D   +    PFA I E+   SP+
Sbjct: 89  LKNDLNHLLQRSHVLLNQHFDNMN--VKSNQDARRNNDDQAIQYTIPFAFISEVVPGSPS 146

Query: 124 AEDGLQLGDQVLKFGTVEAGDN-LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP-RP 181
            +  +++ D+++  G V A ++  L+ +     KN+   +PV+++R+G ++  ++TP R 
Sbjct: 147 DKADIKVDDKLISIGNVHAANHSKLQNIQMVVMKNEDRPLPVLLLREGQILKTSLTPSRN 206

Query: 182 WQGRGLLGCHFRML 195
           W GRGLLGC  + L
Sbjct: 207 WNGRGLLGCRIQEL 220

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC). During the base subcomplex assembly is part of a NAS2:RPT4:RPT5 module; NAS2 is released during the further base assembly process.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q552Y8|PSMD9_DICDI Probable 26S proteasome non-ATPase regulatory subunit 9 OS=Dictyostelium discoideum GN=psmD9 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 52/233 (22%)

Query: 10  IMSLMEKRSALEADMNAIIDRLSQSNGP--GLSGNLVDSEGFPRTDIDIHL-VRSERRRL 66
           I +LM  R  LE ++ ++++ L   +G   GL G+  DSEG+P   +++ + V+  R R+
Sbjct: 25  IKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFTDSEGYPSPHLELIIEVKKARSRI 84

Query: 67  AG--------------------DDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVD-- 104
           A                         + NQ+ S      + S +N    N+   M +D  
Sbjct: 85  AHIQNDYKQVMKDIEFHLEKLHKSPTNKNQSSSTFSINNTTSTSNNNNNNNEDEMKIDKP 144

Query: 105 -------------VIIRR---PFAVIDEITDASPAAEDGLQLGDQVLKFGTV-------E 141
                        V + +   PF  ID +++ SP+ +  L+ GD + +FGTV       +
Sbjct: 145 LTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDKANLKKGDLIFQFGTVGPFFEERQ 204

Query: 142 AGDNL----LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGC 190
            GDNL    L+ +A   R ++  A+ + + R   +I+ ++ PR W G+GL+GC
Sbjct: 205 VGDNLNSNHLQSIATIVRNSENKAIQIKLSRGTSIISTSLIPRKWSGQGLIGC 257

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

>sp|O94393|PSMD9_SCHPO Probable 26S proteasome regulatory subunit p27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nas2 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 43/218 (19%)

Query: 14  MEKRSALEADMNAIIDRLSQSNGPGLSGN------LVDSEGFPRTDIDIHLVRSERRR-- 65
           M++   L+     I +RL++  G  L         L+  +GFPR+DID+  +R+ R    
Sbjct: 1   MDEFKQLDLKKREIENRLNELEGVLLKERVTMDTPLLTEDGFPRSDIDVPSIRTARHEII 60

Query: 66  -LAGDDGGSNNQNPSILGTV------QSASFNN-------AVPRNSPAA---MDVDVIIR 108
            L  D     +Q   +L  V      +S + N+       A P N  AA   M+ D+I R
Sbjct: 61  TLRNDHRELEDQIKKVLEKVFSGFSKESLAANDETKLAQEADPLNFNAANYNMN-DIISR 119

Query: 109 -------RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNA 161
                  +PF V+D +   SPA E GL +GD+++    V +    L  L      N    
Sbjct: 120 SKILGRVKPFCVVDSVAVESPAQEAGLCIGDELVHVQNVTS----LSELPTFISNNVNKT 175

Query: 162 VPVVIMR------QGGLINLAVTPRPWQGRGLLGCHFR 193
           + V+++R         L+ L +TP  WQG GLLGCH R
Sbjct: 176 LDVLLIRGYSADGSTNLVELKLTPHKWQGPGLLGCHLR 213

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q10920|PSMD9_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 9 OS=Caenorhabditis elegans GN=C44B7.1 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 24/192 (12%)

Query: 13  LMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAG--DD 70
           L+++R  L+  +  ++  L ++N   +   L+D+EG+P   ID++ VR  R  L    +D
Sbjct: 10  LLQQRDELDGKIKELMLVL-ETNNSTMDSPLLDAEGYPLNTIDVYAVRHARHDLICLRND 68

Query: 71  GGS---------NNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDAS 121
             +          N+N  + G   + S    V R S            PF  I  + + S
Sbjct: 69  RAALTEKIVVEMENENKEVSGQT-ATSEEKPVHRTS----------NEPFVKISSVVELS 117

Query: 122 PAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180
           PA   G +  D ++++G +  G+ N ++ +A   ++++   + V ++R+   + L + P+
Sbjct: 118 PADIGGFRKDDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRVTVIRENRPVRLEICPK 177

Query: 181 PWQGRGLLGCHF 192
            W G GLLGC+ 
Sbjct: 178 KWSGPGLLGCNI 189

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC).

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
356516992	230	PREDICTED: probable 26S proteasome regul	1.0	0.847	0.6	1e-68
356516996	212	PREDICTED: probable 26S proteasome regul	1.0	0.919	0.646	1e-67
217072122	213	unknown [Medicago truncatula] gi|3885171	1.0	0.915	0.638	1e-66
225445869	216	PREDICTED: 26S proteasome non-ATPase reg	1.0	0.902	0.597	2e-66
359484837	230	PREDICTED: 26S proteasome non-ATPase reg	1.0	0.847	0.565	5e-66
356516994	231	PREDICTED: probable 26S proteasome regul	1.0	0.844	0.593	7e-66
356516988	212	PREDICTED: probable 26S proteasome regul	1.0	0.919	0.627	9e-66
356516984	222	PREDICTED: probable 26S proteasome regul	1.0	0.878	0.594	5e-65
356516986	229	PREDICTED: probable 26S proteasome regul	1.0	0.851	0.576	4e-64
359484839	210	PREDICTED: 26S proteasome non-ATPase reg	1.0	0.928	0.595	5e-64

>gi|356516992|ref|XP_003527174.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 1 [Glycine max]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/230 (60%), Positives = 162/230 (70%), Gaps = 35/230 (15%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSEGFPR+DIDI +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEGFPRSDIDIPVVR 60

Query: 61  SERRRLA-----------------------------------GDDGGSNNQNPSILGTVQ 85
           +ERRRLA                                   G+D GS+ Q  S + TV 
Sbjct: 61  AERRRLAELRSDHNEVTEKINLNIQILHSARLGNRSLPFKNSGNDDGSDTQISSNMDTVA 120

Query: 86  SASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN 145
           S    N +   SP +MDV+V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGDN
Sbjct: 121 STPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDN 180

Query: 146 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
           LL+RL++E + N G AVPVVIMRQG +INL +TPRPWQGRGLLGCHFR+L
Sbjct: 181 LLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQGRGLLGCHFRIL 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516996|ref|XP_003527176.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 3 [Glycine max]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/212 (64%), Positives = 158/212 (74%), Gaps = 17/212 (8%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSEGFPR+DIDI +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEGFPRSDIDIPVVR 60

Query: 61  SERRRLAGDDGGSN------NQNPSILG-----------TVQSASFNNAVPRNSPAAMDV 103
           +ERRRLA      N      N N  IL            TV S    N +   SP +MDV
Sbjct: 61  AERRRLAELRSDHNEVTEKINLNIQILHSARLGNRSNMDTVASTPSQNVLLIRSPNSMDV 120

Query: 104 DVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVP 163
           +V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGDNLL+RL++E + N G AVP
Sbjct: 121 NVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDNLLQRLSSEAQSNLGCAVP 180

Query: 164 VVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
           VVIMRQG +INL +TPRPWQGRGLLGCHFR+L
Sbjct: 181 VVIMRQGTVINLTITPRPWQGRGLLGCHFRIL 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072122|gb|ACJ84421.1| unknown [Medicago truncatula] gi|388517173|gb|AFK46648.1| unknown [Medicago truncatula]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/213 (63%), Positives = 158/213 (74%), Gaps = 18/213 (8%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNG-PGLSGNLVDSEGFPRTDIDIHLV 59
           MVGTN+KAE  SLM+KRSALE++MN+II RLSQ  G PGLSGNL+DSEGFPR+DID+ LV
Sbjct: 1   MVGTNVKAETKSLMDKRSALESEMNSIIARLSQFPGAPGLSGNLIDSEGFPRSDIDVPLV 60

Query: 60  RSERRRLA------GDDGGSNNQNPSILG-----------TVQSASFNNAVPRNSPAAMD 102
           R+ERRRLA       D     NQN  IL            TV S    N +   SP +MD
Sbjct: 61  RAERRRLAELRNDYTDVTDKINQNIHILHSTRLGNHKNSETVASTPSQNVLVSLSPNSMD 120

Query: 103 VDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAV 162
           VDV++ RPFAV+DEI+DASPA EDGLQLGDQ+LKFG VEAG+NLL RLA+E + + G  V
Sbjct: 121 VDVLVSRPFAVVDEISDASPAVEDGLQLGDQILKFGNVEAGENLLHRLASEAQSSMGQTV 180

Query: 163 PVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
           PVVIMRQG +INL VTPR WQGRGLLGCHFR+L
Sbjct: 181 PVVIMRQGTVINLTVTPRTWQGRGLLGCHFRIL 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445869|ref|XP_002278908.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like isoform 1 [Vitis vinifera]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 157/216 (72%), Gaps = 21/216 (9%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MVG NLKAE M+LM++R+ LEA MNAII RL Q  GPG+SG+LVDSEGFPR+DIDI  VR
Sbjct: 1   MVGANLKAEAMALMDRRTELEAQMNAIIQRLCQPGGPGISGSLVDSEGFPRSDIDIPTVR 60

Query: 61  SERRRLA---------------------GDDGGSNNQNPSILGTVQSASFNNAVPRNSPA 99
           +ER+RLA                         GSNNQ  S    V SA+ +N +PR++  
Sbjct: 61  AERQRLAELRNDYKDITEKINENIQLLHSARLGSNNQGSSTATAVPSAASHNVLPRDTLT 120

Query: 100 AMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQG 159
           AMDVD  +  PFAV+DEI +ASPAAEDGLQLGD+++KFG VEAGDNLL RLA+E + N G
Sbjct: 121 AMDVDATVSLPFAVVDEIAEASPAAEDGLQLGDRIVKFGNVEAGDNLLPRLASEAQTNHG 180

Query: 160 NAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
           +A+PV++MRQG LINL +TPR WQGRGLLGCHF+ML
Sbjct: 181 HAIPVIVMRQGALINLTMTPRTWQGRGLLGCHFQML 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484837|ref|XP_003633171.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like isoform 2 [Vitis vinifera] gi|297743643|emb|CBI36526.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (652), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 130/230 (56%), Positives = 159/230 (69%), Gaps = 35/230 (15%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MVG NLKAE M+LM++R+ LEA MNAII RL Q  GPG+SG+LVDSEGFPR+DIDI  VR
Sbjct: 1   MVGANLKAEAMALMDRRTELEAQMNAIIQRLCQPGGPGISGSLVDSEGFPRSDIDIPTVR 60

Query: 61  SERRRLA-----------------------------------GDDGGSNNQNPSILGTVQ 85
           +ER+RLA                                    +D GSNNQ  S    V 
Sbjct: 61  AERQRLAELRNDYKDITEKINENIQLLHSARLAPRSSLHKDLDNDEGSNNQGSSTATAVP 120

Query: 86  SASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN 145
           SA+ +N +PR++  AMDVD  +  PFAV+DEI +ASPAAEDGLQLGD+++KFG VEAGDN
Sbjct: 121 SAASHNVLPRDTLTAMDVDATVSLPFAVVDEIAEASPAAEDGLQLGDRIVKFGNVEAGDN 180

Query: 146 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
           LL RLA+E + N G+A+PV++MRQG LINL +TPR WQGRGLLGCHF+ML
Sbjct: 181 LLPRLASEAQTNHGHAIPVIVMRQGALINLTMTPRTWQGRGLLGCHFQML 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516994|ref|XP_003527175.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 2 [Glycine max]

 Score =  255 bits (651), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 137/231 (59%), Positives = 158/231 (68%), Gaps = 36/231 (15%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSEGFPR+DIDI +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEGFPRSDIDIPVVR 60

Query: 61  SERRRLAGDDGGSN------NQNPSILG------------------------------TV 84
           +ERRRLA      N      N N  IL                               TV
Sbjct: 61  AERRRLAELRSDHNEVTEKINLNIQILHSARLGNRSLPFKNSGTAKSNLYTQISSNMDTV 120

Query: 85  QSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD 144
            S    N +   SP +MDV+V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGD
Sbjct: 121 ASTPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGD 180

Query: 145 NLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
           NLL+RL++E + N G AVPVVIMRQG +INL +TPRPWQGRGLLGCHFR+L
Sbjct: 181 NLLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQGRGLLGCHFRIL 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516988|ref|XP_003527172.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 3 [Glycine max]

 Score =  254 bits (650), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 155/212 (73%), Gaps = 17/212 (8%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSE FP +DID+ +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEDFPHSDIDVPVVR 60

Query: 61  SERRRLAGDDGGSN------NQNPSILG-----------TVQSASFNNAVPRNSPAAMDV 103
           +ERRRLA      N      N N  IL            TV S    N +   SP +MDV
Sbjct: 61  AERRRLAELRSDHNEVTDKINLNIQILHSARLGNRSNMDTVASTPSQNVLLIRSPNSMDV 120

Query: 104 DVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVP 163
           +V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGDNLL+RL++E + N G AVP
Sbjct: 121 NVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDNLLQRLSSEAQSNLGCAVP 180

Query: 164 VVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
           VVIMRQG +INL +TPRPWQ RGLLGCHFR+L
Sbjct: 181 VVIMRQGTVINLTITPRPWQARGLLGCHFRIL 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516984|ref|XP_003527170.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 1 [Glycine max]

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/222 (59%), Positives = 156/222 (70%), Gaps = 27/222 (12%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSE FP +DID+ +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEDFPHSDIDVPVVR 60

Query: 61  SERRRLA---GDDG------------------------GSNNQNPSILGTVQSASFNNAV 93
           +ERRRLA    D                           S+ Q  S + TV S    N +
Sbjct: 61  AERRRLAELRSDHNEVTDKINLNIQILHSARLGNRSFKNSDTQVSSNMDTVASTPSQNVL 120

Query: 94  PRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAE 153
              SP +MDV+V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGDNLL+RL++E
Sbjct: 121 LIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDNLLQRLSSE 180

Query: 154 GRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
            + N G AVPVVIMRQG +INL +TPRPWQ RGLLGCHFR+L
Sbjct: 181 AQSNLGCAVPVVIMRQGTVINLTITPRPWQARGLLGCHFRIL 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516986|ref|XP_003527171.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 2 [Glycine max]

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 132/229 (57%), Positives = 157/229 (68%), Gaps = 34/229 (14%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSE FP +DID+ +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEDFPHSDIDVPVVR 60

Query: 61  SERRRLA-------------------------GDDGGSNN---------QNPSILGTVQS 86
           +ERRRLA                         G+    N+         Q  S + TV S
Sbjct: 61  AERRRLAELRSDHNEVTDKINLNIQILHSARLGNRSFKNSGTAKSNLYTQVSSNMDTVAS 120

Query: 87  ASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL 146
               N +   SP +MDV+V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGDNL
Sbjct: 121 TPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDNL 180

Query: 147 LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
           L+RL++E + N G AVPVVIMRQG +INL +TPRPWQ RGLLGCHFR+L
Sbjct: 181 LQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQARGLLGCHFRIL 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484839|ref|XP_003633172.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like isoform 3 [Vitis vinifera]

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 157/210 (74%), Gaps = 15/210 (7%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MVG NLKAE M+LM++R+ LEA MNAII RL Q  GPG+SG+LVDSEGFPR+DIDI  VR
Sbjct: 1   MVGANLKAEAMALMDRRTELEAQMNAIIQRLCQPGGPGISGSLVDSEGFPRSDIDIPTVR 60

Query: 61  SERRRLA------GDDGGSNNQNPSILGTVQSA---------SFNNAVPRNSPAAMDVDV 105
           +ER+RLA       D     N+N  +L + + A         + +N +PR++  AMDVD 
Sbjct: 61  AERQRLAELRNDYKDITEKINENIQLLHSARLAPRSSLHKDLASHNVLPRDTLTAMDVDA 120

Query: 106 IIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVV 165
            +  PFAV+DEI +ASPAAEDGLQLGD+++KFG VEAGDNLL RLA+E + N G+A+PV+
Sbjct: 121 TVSLPFAVVDEIAEASPAAEDGLQLGDRIVKFGNVEAGDNLLPRLASEAQTNHGHAIPVI 180

Query: 166 IMRQGGLINLAVTPRPWQGRGLLGCHFRML 195
           +MRQG LINL +TPR WQGRGLLGCHF+ML
Sbjct: 181 VMRQGALINLTMTPRTWQGRGLLGCHFQML 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2174453	227	AT5G57950 "AT5G57950" [Arabido	0.707	0.607	0.545	1.2e-33
RGD|621110	222	Psmd9 "proteasome (prosome, ma	0.958	0.842	0.298	1.7e-18
DICTYBASE|DDB_G0275753	262	psmD9 "26S proteasome non-ATPa	0.605	0.450	0.292	4.9e-18
UNIPROTKB|Q3SZ19	221	PSMD9 "26S proteasome non-ATPa	0.923	0.814	0.271	9.5e-18
MGI|MGI:1914401	222	Psmd9 "proteasome (prosome, ma	0.943	0.828	0.285	1.2e-17
UNIPROTKB|O00233	223	PSMD9 "26S proteasome non-ATPa	0.923	0.807	0.273	1.6e-17
SGD|S000001269	220	NAS2 "Proteasome-interacting p	0.938	0.831	0.287	6.7e-17
GENEDB_PFALCIPARUM|PFC0785c	225	PFC0785c "proteasome regulator	0.692	0.6	0.311	3.4e-13
UNIPROTKB|O77379	225	PFC0785c "Proteasome regulator	0.692	0.6	0.311	3.4e-13
UNIPROTKB|Q10920	197	C44B7.1 "Probable 26S proteaso	0.902	0.893	0.241	3.4e-13

TAIR|locus:2174453 AT5G57950 "AT5G57950" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 78/143 (54%), Positives = 96/143 (67%)

Query:    56 IHLVRSERRRLAGDDGGSNNQNPSILGTVQ---SASFNNAVPRNSPAAMDVDVIIRRPFA 112
             +H VR   R  +  D G   +  S+ G      SAS   +    +   MDVDV+   PFA
Sbjct:    87 LHSVRPTSRASSTKDSGP--EETSLSGAAVNSLSASMQTSGFSVTSGPMDVDVVTSIPFA 144

Query:   113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
             ++DEI ++SPAAE GLQLGDQVLKFG VE GDNLL+RLAAE + NQG AV V +MRQG  
Sbjct:   145 MVDEINESSPAAEGGLQLGDQVLKFGNVEGGDNLLQRLAAEAQSNQGQAVSVQVMRQGAK 204

Query:   173 INLAVTPRPWQGRGLLGCHFRML 195
             + L+VTPR WQGRGLLGCHFR++
Sbjct:   205 VVLSVTPRIWQGRGLLGCHFRLV 227

GO:0005838 "proteasome regulatory particle" evidence=ISS

GO:0035556 "intracellular signal transduction" evidence=ISS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

RGD|621110 Psmd9 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 60/201 (29%), Positives = 103/201 (51%)

Query:     8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRR-- 65
             ++I  LM ++  +EA + A  D L    G G++  LVD EG+PR D+D++ VR+ R    
Sbjct:    21 SDIQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80

Query:    66 -LAGDDGGSNNQNPSILGTV-----QSASFNNAVPR----NSPAAMDVDVIIRRPFAVID 115
              L  D      Q    L  +     +  + + A  R    N   A D   +  + FA ++
Sbjct:    81 CLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASDSPAL-PKAFARVN 139

Query:   116 EITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGLIN 174
              I+  SPA+  GLQ+ D++++FG+V   +   L+ +    + ++G  + V+++R+G    
Sbjct:   140 SISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNVGTVVQHSEGKPLNVMVIRRGEKHQ 199

Query:   175 LAVTPRPWQGRGLLGCHFRML 195
             L +TP  W G+GLLGC+   L
Sbjct:   200 LRLTPTRWAGKGLLGCNITPL 220

GO:0000502 "proteasome complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0032024 "positive regulation of insulin secretion" evidence=IDA

GO:0043425 "bHLH transcription factor binding" evidence=IDA;IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0046676 "negative regulation of insulin secretion" evidence=IMP

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO;ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISO

DICTYBASE|DDB_G0275753 psmD9 "26S proteasome non-ATPase regulatory subunit 9" [Dictyostelium discoideum (taxid:44689)]

 Score = 150 (57.9 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
 Identities = 38/130 (29%), Positives = 67/130 (51%)

Query:    73 SNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVI-IRRPFAVIDEITDASPAAEDGLQLG 131
             SNN N +    ++            P  ++V+V  +  PF  ID +++ SP+ +  L+ G
Sbjct:   128 SNNNNNNNEDEMKIDKPLTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDKANLKKG 187

Query:   132 DQVLKFGTV-------EAGDNL----LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180
             D + +FGTV       + GDNL    L+ +A   R ++  A+ + + R   +I+ ++ PR
Sbjct:   188 DLIFQFGTVGPFFEERQVGDNLNSNHLQSIATIVRNSENKAIQIKLSRGTSIISTSLIPR 247

Query:   181 PWQGRGLLGC 190
              W G+GL+GC
Sbjct:   248 KWSGQGLIGC 257

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005838 "proteasome regulatory particle" evidence=ISS

UNIPROTKB|Q3SZ19 PSMD9 "26S proteasome non-ATPase regulatory subunit 9" [Bos taurus (taxid:9913)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 54/199 (27%), Positives = 102/199 (51%)

Query:     8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
             +++  L+ ++  +EA + A  + L    G G++  LVD EG+PR D+D++ VR+ R  + 
Sbjct:    21 SDVQELIRRKEEIEAQIKANYEVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIV 80

Query:    68 GDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDV-----DVIIR---------RPFAV 113
                    N + +++  V+ A            A D+     + + R         + FA 
Sbjct:    81 C----LQNDHKAVMKQVEDALHQLHARDKEKQARDLAEAHREALSRDQSQGLSPAQAFAK 136

Query:   114 IDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGL 172
             ++ I+  SPA+  GLQ+ D++L+FG+V   +   L+ + +  + ++G  + V +MR+G  
Sbjct:   137 VNSISPGSPASIAGLQVDDEILEFGSVNTQNFQSLQNIGSVVQHSEGKPLNVTVMRRGEK 196

Query:   173 INLAVTPRPWQGRGLLGCH 191
               L + P  W G+GLLGC+
Sbjct:   197 HQLRLVPTRWAGKGLLGCN 215

GO:0070682 "proteasome regulatory particle assembly" evidence=ISS

MGI|MGI:1914401 Psmd9 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" [Mus musculus (taxid:10090)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 56/196 (28%), Positives = 99/196 (50%)

Query:     8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRR-- 65
             ++I  LM ++  +EA++ A  D L    G G++  LVD EG+PR D+D++ VR+ R    
Sbjct:    21 SDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80

Query:    66 -LAGDDGGSNNQNPSILGTVQSASFNNAVPRNSPA---AMDVDVIIRRP-----FAVIDE 116
              L  D      Q    L  + +          + A   AM+  +    P     FA ++ 
Sbjct:    81 CLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASNSPVLPQAFARVNS 140

Query:   117 ITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGLINL 175
             I+  SPA+  GLQ+ D++++FG+V   +   ++ +    + ++G  + V ++R+G    L
Sbjct:   141 ISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIRRGEKHQL 200

Query:   176 AVTPRPWQGRGLLGCH 191
              + P  W G+GLLGC+
Sbjct:   201 RLIPTRWAGKGLLGCN 216

GO:0000502 "proteasome complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0032024 "positive regulation of insulin secretion" evidence=ISO;ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISO;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046676 "negative regulation of insulin secretion" evidence=ISO;ISS

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

UNIPROTKB|O00233 PSMD9 "26S proteasome non-ATPase regulatory subunit 9" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 55/201 (27%), Positives = 102/201 (50%)

Query:     8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
             +++  LM ++  +EA + A  D L    G G++  LVD EG+PR+D+D++ VR+ R  + 
Sbjct:    21 SDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNII 80

Query:    68 GDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDV-----DVIIR-----------RPF 111
                    N + +++  V+ A            A D+     + + R           R F
Sbjct:    81 C----LQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSESQGPPRAF 136

Query:   112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQG 170
             A ++ I+  SPA+  GLQ+ D++++FG+V   +   L  + +  + ++G  + V ++R+G
Sbjct:   137 AKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRG 196

Query:   171 GLINLAVTPRPWQGRGLLGCH 191
                 L + P  W G+GLLGC+
Sbjct:   197 EKHQLRLVPTRWAGKGLLGCN 217

GO:0005838 "proteasome regulatory particle" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0046676 "negative regulation of insulin secretion" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0032024 "positive regulation of insulin secretion" evidence=ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

SGD|S000001269 NAS2 "Proteasome-interacting protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 56/195 (28%), Positives = 100/195 (51%)

Query:     9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAG 68
             ++  LM  ++ +E  + A    L Q  G G+   LV  +G+PR+D+D+  V   R+ +  
Sbjct:    30 KLSELMVLKTDIETQLEAYFSVLEQQ-GIGMDSALVTPDGYPRSDVDVLQVTMIRKNVNM 88

Query:    69 DDGGSNN--QNPSILGTVQSASFNNA-VPRNSPAAMDVD---VIIRRPFAVIDEITDASP 122
                  N+  Q   +L    +  F+N  V  N  A  + D   +    PFA I E+   SP
Sbjct:    89 LKNDLNHLLQRSHVL---LNQHFDNMNVKSNQDARRNNDDQAIQYTIPFAFISEVVPGSP 145

Query:   123 AAEDGLQLGDQVLKFGTVEAGDNL-LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP-R 180
             + +  +++ D+++  G V A ++  L+ +     KN+   +PV+++R+G ++  ++TP R
Sbjct:   146 SDKADIKVDDKLISIGNVHAANHSKLQNIQMVVMKNEDRPLPVLLLREGQILKTSLTPSR 205

Query:   181 PWQGRGLLGCHFRML 195
              W GRGLLGC  + L
Sbjct:   206 NWNGRGLLGCRIQEL 220

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IGI;IDA;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GENEDB_PFALCIPARUM|PFC0785c PFC0785c "proteasome regulatory protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 48/154 (31%), Positives = 79/154 (51%)

Query:     5 NLKAEIMSLMEKRSALEADMNAIIDRLS--QSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
             NL+ E   L++KR  +E ++   +D L   ++   G+ GNL+DSEGFPR DIDI+ +R  
Sbjct:     2 NLE-EFNELVKKREDIENELKEHMDFLERPENKNVGMKGNLIDSEGFPRNDIDIYSIRVA 60

Query:    63 RRR---LAGDDGGSNNQNPSILGTVQSA----------SFNNAV---PRNSPAAMDVDVI 106
             R +   L  D    N +    +  V S           + NN +   P+      D+   
Sbjct:    61 RNKIICLKNDYIDINKKLEEYIHKVHSTHPVIRVERKKNINNDLLNTPQQITKEEDIKNA 120

Query:   107 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTV 140
              +  FA+IDE+ + SP+ + GL++ DQ+ +FG +
Sbjct:   121 KKNVFAIIDEVIENSPSHKSGLKINDQIFQFGNI 154

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005838 "proteasome regulatory particle" evidence=ISS

UNIPROTKB|O77379 PFC0785c "Proteasome regulatory protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 48/154 (31%), Positives = 79/154 (51%)

Query:     5 NLKAEIMSLMEKRSALEADMNAIIDRLS--QSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
             NL+ E   L++KR  +E ++   +D L   ++   G+ GNL+DSEGFPR DIDI+ +R  
Sbjct:     2 NLE-EFNELVKKREDIENELKEHMDFLERPENKNVGMKGNLIDSEGFPRNDIDIYSIRVA 60

Query:    63 RRR---LAGDDGGSNNQNPSILGTVQSA----------SFNNAV---PRNSPAAMDVDVI 106
             R +   L  D    N +    +  V S           + NN +   P+      D+   
Sbjct:    61 RNKIICLKNDYIDINKKLEEYIHKVHSTHPVIRVERKKNINNDLLNTPQQITKEEDIKNA 120

Query:   107 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTV 140
              +  FA+IDE+ + SP+ + GL++ DQ+ +FG +
Sbjct:   121 KKNVFAIIDEVIENSPSHKSGLKINDQIFQFGNI 154

GO:0005838 "proteasome regulatory particle" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|Q10920 C44B7.1 "Probable 26S proteasome non-ATPase regulatory subunit 9" [Caenorhabditis elegans (taxid:6239)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 44/182 (24%), Positives = 89/182 (48%)

Query:    13 LMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGDDGG 72
             L+++R  L+  +  ++  L ++N   +   L+D+EG+P   ID++ VR  R  L      
Sbjct:    10 LLQQRDELDGKIKELMLVL-ETNNSTMDSPLLDAEGYPLNTIDVYAVRHARHDLICLRND 68

Query:    73 SNNQNPSILGTVQSASFNNAVPRNSPAAMDVDV--IIRRPFAVIDEITDASPAAEDGLQL 130
                    I+  V+  + N  V   +  + +  V      PF  I  + + SPA   G + 
Sbjct:    69 RAALTEKIV--VEMENENKEVSGQTATSEEKPVHRTSNEPFVKISSVVELSPADIGGFRK 126

Query:   131 GDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLG 189
              D ++++G +  G+ N ++ +A   ++++   + V ++R+   + L + P+ W G GLLG
Sbjct:   127 DDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRVTVIRENRPVRLEICPKKWSGPGLLG 186

Query:   190 CH 191
             C+
Sbjct:   187 CN 188

GO:0005515 "protein binding" evidence=IPI

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0030018001 SubName- Full=Putative uncharacterized protein; (211 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	1e-06
COG0265	347	COG0265, DegQ, Trypsin-like serine proteases, typi	1e-04
pfam13180	81	pfam13180, PDZ_2, PDZ domain	1e-04
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	3e-04
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	5e-04
PRK10779	449	PRK10779, PRK10779, zinc metallopeptidase RseP; Pr	0.003
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	0.004

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 171
            VI E+   SPAA+ GL+ GD++L     +      E L    ++N G  + + + R G 
Sbjct: 14  PVIGEVVPGSPAAKAGLKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE 71

Query: 172 LINLAVTP 179
            I L +TP
Sbjct: 72  TITLTLTP 79

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 171
           AV+  +   SPAA+ G++ GD +          +L + +AA      G+ V + ++R G 
Sbjct: 272 AVVLGVLPGSPAAKAGIKAGDIITAVNGKPV-ASLSDLVAAVASNRPGDEVALKLLRGGK 330

Query: 172 LINLAVTP 179
              LAVT 
Sbjct: 331 ERELAVTL 338

Length = 347

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
             +  + + SPAA+ GL+ GD +L      V +   L+E +        G+ V + + R 
Sbjct: 15  VTVVSVKEGSPAAKAGLKPGDIILSIDGKKVNSLTELIEVI---LNGKPGDTVKLTVYRD 71

Query: 170 GGLINLAVT 178
           G    + V 
Sbjct: 72  GKKKTVEVK 80

Length = 81

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
            ++  +   SPAA+ GL+ GD +L      V++  +L   LA       G+ V + ++R 
Sbjct: 26  VLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALA---ELKPGDKVTLTVLRG 82

Query: 170 GGLINLAV 177
           G  + + V
Sbjct: 83  GKELTVTV 90

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVI 166
              V+  +   SPA   GLQ GD +L     +  +  LE +A   +K  G  V + +
Sbjct: 13  GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQ 169
            V+ E+   S A++ GLQ GD+++K      G  L +        R N G  + + I RQ
Sbjct: 223 PVLAEVQPNSAASKAGLQAGDRIVKVD----GQPLTQWQTFVTLVRDNPGKPLALEIERQ 278

Query: 170 GGLINLAVTP--RPWQGR 185
           G  ++L +TP  +P  G+
Sbjct: 279 GSPLSLTLTPDSKPGNGK 296

Length = 449

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 103 VDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAV 162
           V         V+  +   SPAA+ GL++GD +L+                  +K  G  V
Sbjct: 19  VGGKDEGGGVVVSSVVPGSPAAKAGLRVGDVILEVNGTSVEGLTHLEAVDLLKKA-GGKV 77

Query: 163 PVVIMRQG 170
            + ++R G
Sbjct: 78  TLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG3129	231	consensus 26S proteasome regulatory complex, subun	100.0
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	99.64
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.57
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	99.45
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	99.43
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	99.42
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	99.39
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.33
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	99.25
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.24
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	99.24
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.18
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	99.16
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.14
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.1
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.08
PRK10139	455	serine endoprotease; Provisional	99.07
PRK10898	353	serine endoprotease; Provisional	99.07
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	99.06
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	99.04
PRK10942	473	serine endoprotease; Provisional	98.98
PRK10139	455	serine endoprotease; Provisional	98.93
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	98.92
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.88
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.88
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.87
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.86
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.83
PRK10942	473	serine endoprotease; Provisional	98.83
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.8
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.65
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.57
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	98.53
PRK11186	667	carboxy-terminal protease; Provisional	98.36
KOG3834	462	consensus Golgi reassembly stacking protein GRASP6	98.25
PRK09681	276	putative type II secretion protein GspC; Provision	98.24
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	98.15
KOG3553	124	consensus Tax interaction protein TIP1 [Cell wall/	98.14
KOG1421	955	consensus Predicted signaling-associated protein (	98.09
COG3975	558	Predicted protease with the C-terminal PDZ domain	97.71
KOG3834	462	consensus Golgi reassembly stacking protein GRASP6	97.63
KOG1320	473	consensus Serine protease [Posttranslational modif	97.53
COG3031	275	PulC Type II secretory pathway, component PulC [In	97.5
COG0750	375	Predicted membrane-associated Zn-dependent proteas	97.19
KOG3580	1027	consensus Tight junction proteins [Signal transduc	97.08
KOG3209	984	consensus WW domain-containing protein [General fu	96.91
PF12812	78	PDZ_1: PDZ-like domain	96.69
KOG3532	1051	consensus Predicted protein kinase [General functi	96.64
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	96.12
KOG3550	207	consensus Receptor targeting protein Lin-7 [Extrac	96.1
KOG3580	1027	consensus Tight junction proteins [Signal transduc	96.05
KOG3651	429	consensus Protein kinase C, alpha binding protein	95.85
KOG3552	1298	consensus FERM domain protein FRM-8 [General funct	95.73
KOG3209	984	consensus WW domain-containing protein [General fu	95.65
KOG3605	829	consensus Beta amyloid precursor-binding protein [	95.32
KOG0606	1205	consensus Microtubule-associated serine/threonine	93.8
KOG3606	358	consensus Cell polarity protein PAR6 [Signal trans	92.94
KOG1892	1629	consensus Actin filament-binding protein Afadin [C	91.82
KOG1421	955	consensus Predicted signaling-associated protein (	91.0
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	90.4
KOG3549	505	consensus Syntrophins (type gamma) [Extracellular	90.08
KOG3571	626	consensus Dishevelled 3 and related proteins [Gene	89.45
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	88.32
KOG3551	506	consensus Syntrophins (type beta) [Extracellular s	86.36
PF11874	183	DUF3394: Domain of unknown function (DUF3394); Int	83.48

>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.5e-46  Score=291.17  Aligned_cols=194  Identities=36%  Similarity=0.646  Sum_probs=162.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCchhhhhhHhhHhHhh---hhhhhccc
Q 029301            1 MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGD---DGGSNNQN   77 (195)
Q Consensus         1 ~~~~~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~~~~~~lvd~eG~Pr~d~dl~~vr~~r~~i~~l---~~~i~~~~   77 (195)
                      |+|+.+++++++||.+|++||.||++++++|+++++. |++||||.|||||+|+|+|+||++|++|+||   |+++|+++
T Consensus        14 ~ag~~~~~~~~eLm~~K~eiE~qin~~~~vL~~~~~~-Md~pLvd~eGfPRsDIDV~qVRtaRh~ii~LrNDh~el~~qi   92 (231)
T KOG3129|consen   14 MAGANTKSELKELMDKKTEIETQINELVEVLENNGGT-MDGPLVDAEGFPRSDIDVYQVRTARHNIICLRNDHKELTEQI   92 (231)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-CCCcccCCCCCccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            7999999999999999999999999999999997666 9999999999999999999999999999999   99999999


Q ss_pred             chhhhhhhccc--c------CCCCCCCCCC-CCc-----ccccccCCceEEEEEcCCChhhhcCCCCCCEEEEECCee-C
Q 029301           78 PSILGTVQSAS--F------NNAVPRNSPA-AMD-----VDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVE-A  142 (195)
Q Consensus        78 ~~~~~~~~~~~--~------~~~a~~~a~~-~~~-----~~~~~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~-~  142 (195)
                      +.+++.++...  +      ...+...+.. +++     .......||++|.+|.|+|||++|||+.||.|++|++.. .
T Consensus        93 ~~~l~q~hs~~~~~~~~~~~~t~a~~e~~~~~~~~an~~~~~gP~~~Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sg  172 (231)
T KOG3129|consen   93 EVLLNQLHSERPTSRKEVTDDTGAEEEADSRAAGNANSMTSLGPMRPFAVVDSVVPGSPADEAGLCVGDEILKFGNVHSG  172 (231)
T ss_pred             HHHHHHHhccccccchhhccccchhhccccccccccccccccCCccceEEEeecCCCChhhhhCcccCceEEEecccccc
Confidence            98887655441  1      1111111110 101     111334679999999999999999999999999999988 4


Q ss_pred             CCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccCCCceeeeEE-EEeC
Q 029301          143 GDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCH-FRML  195 (195)
Q Consensus       143 ~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~~~~~lGi~-l~p~  195 (195)
                      ++..++.+....+...++.+.++|.|.|+...+.++|..|+|+|.|||+ +.|+
T Consensus       173 n~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~W~GrGLLGC~~i~pi  226 (231)
T KOG3129|consen  173 NFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKKWQGRGLLGCNYIQPI  226 (231)
T ss_pred             cchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcccccCCcceeeeeeccc
Confidence            4555677777777788999999999999999999999999999999998 6664

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=99.64  E-value=2.7e-16  Score=131.20  Aligned_cols=159  Identities=14%  Similarity=0.114  Sum_probs=131.4

Q ss_pred             ccCCCCCCCCCCCCCCCCCCC---CCchhhhhhHhhHhHhh-------hhhhhcccchhh-h----hhhcc------ccC
Q 029301           32 SQSNGPGLSGNLVDSEGFPRT---DIDIHLVRSERRRLAGD-------DGGSNNQNPSIL-G----TVQSA------SFN   90 (195)
Q Consensus        32 ~~~~~~~~~~~lvd~eG~Pr~---d~dl~~vr~~r~~i~~l-------~~~i~~~~~~~~-~----~~~~~------~~~   90 (195)
                      +.||+.....++|.++|+|..   +++++||+..+++++.+       +.+|++..+... +    +|+..      +|+
T Consensus        31 ~~PGg~~d~~~vv~V~g~~~~~~G~l~ltTV~~~~a~l~~~l~a~l~~~~ei~p~e~i~~~G~sdee~~~~n~~~m~~Sq  110 (342)
T COG3480          31 EGPGGEEDLKQVVKVEGHEDKTSGHLNLTTVSVRDATLITYLYAWLSPQEEIVPREQVTPPGESDEEYERRNQFYMETSQ  110 (342)
T ss_pred             ecCCCccccceeEEecCccCCCCceeEEEEEEcccCcHHHHHHhhhCCceeecchhhcCCCCCcHHHHHHHHHHHHHhhh
Confidence            467889999999999997654   59999999999999998       555665554332 1    44433      588


Q ss_pred             CCCCCCCCCCCcccccccCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEE-
Q 029301           91 NAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR-  168 (195)
Q Consensus        91 ~~a~~~a~~~~~~~~~~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R-  168 (195)
                      +.|.++|+..+++++.+.+.++++..|..+|||... |+.||.|++|||++  +.+.+++..+++. ..|+.+++.+.| 
T Consensus       111 ~~A~y~A~~~a~~pv~~~y~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~--f~s~~e~i~~v~~~k~Gd~VtI~~~r~  187 (342)
T COG3480         111 NAAIYAAYKYAGKPVEVTYAGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEP--FTSSDELIDYVSSKKPGDEVTIDYERH  187 (342)
T ss_pred             hHHHHHHHHHcCCceEEEEeeEEEEEccCCcchhce-eccCCeEEeeCCee--cCCHHHHHHHHhccCCCCeEEEEEEec
Confidence            999999999999999999999999999999999887 99999999999999  9999999999987 689999999997 


Q ss_pred             CCEEEEEEEE--eccCCCceeeeEEEE
Q 029301          169 QGGLINLAVT--PRPWQGRGLLGCHFR  193 (195)
Q Consensus       169 ~g~~~~~~l~--~~~~~~~~~lGi~l~  193 (195)
                      ++.....+++  .....+++.||+.+.
T Consensus       188 ~~~~~~~~~tl~~~~~~g~~giGIsl~  214 (342)
T COG3480         188 NETPEIVTITLIKNDDNGKAGIGISLV  214 (342)
T ss_pred             cCCCceEEEEEEeeccCCcceeeeEee
Confidence            6655544444  334567888998763

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.57  E-value=5.1e-14  Score=97.10  Aligned_cols=67  Identities=31%  Similarity=0.402  Sum_probs=61.6

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  178 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~  178 (195)
                      .+++|.+|.++|||+++||++||+|++|||.+  +.++.++..++.. .+|+++.++|.|+|+..+++++
T Consensus        14 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~   81 (82)
T PF13180_consen   14 GGVVVVSVIPGSPAAKAGLQPGDIILAINGKP--VNSSEDLVNILSKGKPGDTVTLTVLRDGEELTVEVT   81 (82)
T ss_dssp             SSEEEEEESTTSHHHHTTS-TTEEEEEETTEE--SSSHHHHHHHHHCSSTTSEEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEEeCCCCcHHHCCCCCCcEEEEECCEE--cCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence            48999999999999999999999999999999  9999999998865 6899999999999999988875

...

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=99.45  E-value=4.3e-13  Score=101.46  Aligned_cols=84  Identities=24%  Similarity=0.375  Sum_probs=67.5

Q ss_pred             cCCceEEEEEcCCChhhhcCCCC-CCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-cCC
Q 029301          108 RRPFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQ  183 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aGL~~-GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R--~g~~~~~~l~~~-~~~  183 (195)
                      ...+..|..|.|+|||++|||++ .|.|+.+++..  ..+.++|..++..+.++++.+.|.+  ....+.++++|. .|+
T Consensus        41 ~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~--l~~~~~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~Wg  118 (138)
T PF04495_consen   41 EEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGL--LDDEDDLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWG  118 (138)
T ss_dssp             CCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSS
T ss_pred             ccceEEEeEecCCCHHHHCCccccccEEEEcccee--cCCHHHHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCC
Confidence            34678899999999999999999 69999999988  8888999999999999999999986  456789999998 799


Q ss_pred             CceeeeEEEE
Q 029301          184 GRGLLGCHFR  193 (195)
Q Consensus       184 ~~~~lGi~l~  193 (195)
                      |+|.|||.+.
T Consensus       119 G~GlLGc~ig  128 (138)
T PF04495_consen  119 GRGLLGCHIG  128 (138)
T ss_dssp             SSTSSSEEEE
T ss_pred             CCeeeeEEec
Confidence            9999999875

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.43  E-value=2.3e-12  Score=88.35  Aligned_cols=67  Identities=19%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVT  178 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~  178 (195)
                      .+++|.+|.++|||+++||++||+|++|||.+  +.+|+++...+... .++.+.+++.|+|+..+++++
T Consensus        10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~--v~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~   77 (79)
T cd00991          10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTP--ITTLEDFMEALKPTKPGEVITVTVLPSTTKLTNVST   77 (79)
T ss_pred             CcEEEEEECCCChHHhcCCCCCCEEEEECCEE--cCCHHHHHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence            47899999999999999999999999999999  99999999999874 588999999999988887765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=99.42  E-value=3.9e-12  Score=86.94  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=65.0

Q ss_pred             cccCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC
Q 029301          106 IIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW  182 (195)
Q Consensus       106 ~~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~  182 (195)
                      .....+++|.+|.++|||+. ||++||+|++|||.+  +.+|+++...+.. ..+..+.+++.|+|+..++++++..|
T Consensus         4 ~~~~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~--v~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~l~~~   78 (79)
T cd00986           4 DYTYHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKP--FKEAEELIDYIQSKKEGDTVKLKVKREEKELPEDLILKTF   78 (79)
T ss_pred             EEEecCEEEEEECCCCchhh-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecc
Confidence            34456789999999999987 899999999999999  9999999999885 57889999999999999988887654

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.39  E-value=5.7e-12  Score=85.65  Aligned_cols=67  Identities=33%  Similarity=0.518  Sum_probs=60.2

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  179 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~  179 (195)
                      .++|.+|.++|||+++||++||+|++|||.+  +.+++++...+....+..+.+++.|+++..++.++|
T Consensus        13 ~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~--i~~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~~l~~   79 (79)
T cd00989          13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQK--IKSWEDLVDAVQENPGKPLTLTVERNGETITLTLTP   79 (79)
T ss_pred             CcEEEeECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHHCCCceEEEEEEECCEEEEEEecC
Confidence            3789999999999999999999999999999  999999999988766778999999999877777653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.33  E-value=1.3e-11  Score=85.15  Aligned_cols=70  Identities=24%  Similarity=0.287  Sum_probs=62.5

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEEC-CEEEEEEEEec
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ-GGLINLAVTPR  180 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~-g~~~~~~l~~~  180 (195)
                      ..+++|..|.++|||+++||++||+|++|||.+  +.+|  .++..++....++.+.+++.|+ ++..+++++|.
T Consensus        12 ~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~--i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~~~~   84 (85)
T cd00988          12 DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEP--VDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTLTRL   84 (85)
T ss_pred             CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEE--cCCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEEEEC
Confidence            456889999999999999999999999999999  8888  9998888777788999999998 88888888763

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=99.25  E-value=7.7e-11  Score=80.35  Aligned_cols=67  Identities=24%  Similarity=0.375  Sum_probs=56.4

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|.+|.++|||+++||++||+|++|||.+  +.+|.++...+  ..+..+.+++.|+|+..++.+++.
T Consensus        12 ~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~--v~~~~~~l~~~--~~~~~v~l~v~r~g~~~~~~v~~~   78 (80)
T cd00990          12 GLGKVTFVRDDSPADKAGLVAGDELVAVNGWR--VDALQDRLKEY--QAGDPVELTVFRDDRLIEVPLTLA   78 (80)
T ss_pred             CcEEEEEECCCChHHHhCCCCCCEEEEECCEE--hHHHHHHHHhc--CCCCEEEEEEEECCEEEEEEEEec
Confidence            45889999999999999999999999999999  88776654332  467789999999999888887653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00054 RIP metalloprotease RseP

Probab=99.24  E-value=8e-11  Score=104.24  Aligned_cols=78  Identities=21%  Similarity=0.351  Sum_probs=68.7

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccCCCceeeeE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGC  190 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~~~~~lGi  190 (195)
                      +++|.+|.++|||+++||++||+|++|||++  +.+|+++...+....++++.+++.|+|+..+++++|...+.. .+|+
T Consensus       204 g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~--V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~-~iGi  280 (420)
T TIGR00054       204 EPVLSDVTPNSPAEKAGLKEGDYIQSINGEK--LRSWTDFVSAVKENPGKSMDIKVERNGETLSISLTPEAKGKI-GIGI  280 (420)
T ss_pred             CcEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCceEEEEEECCEEEEEEEEEcCCCce-EEEE
Confidence            5789999999999999999999999999999  999999999998878888999999999999999988642222 3777


Q ss_pred             E
Q 029301          191 H  191 (195)
Q Consensus       191 ~  191 (195)
                      .
T Consensus       281 ~  281 (420)
T TIGR00054       281 S  281 (420)
T ss_pred             e
Confidence            4

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=99.24  E-value=9.1e-11  Score=81.42  Aligned_cols=65  Identities=22%  Similarity=0.339  Sum_probs=58.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLA  176 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~  176 (195)
                      .+++|.+|.++|||+++||++||+|++|||.+  +.++.++...+... .+..+.+.+.|+|+..++.
T Consensus        24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~--i~~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~~~   89 (90)
T cd00987          24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKP--VKSVADLRRALAELKPGDKVTLTVLRGGKELTVT   89 (90)
T ss_pred             CEEEEEEECCCCHHHHcCCCcCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEee
Confidence            37889999999999999999999999999999  99999999988764 4789999999999876654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.18  E-value=2.4e-10  Score=101.99  Aligned_cols=80  Identities=29%  Similarity=0.425  Sum_probs=69.5

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccCC--C--ce
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ--G--RG  186 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~--~--~~  186 (195)
                      .++|.+|.++|||++|||++||+|++|||++  +.+|+++...+....++++.++|.|+|+..+++++|....  +  .+
T Consensus       222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~--V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~g~~~~  299 (449)
T PRK10779        222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQP--LTQWQTFVTLVRDNPGKPLALEIERQGSPLSLTLTPDSKPGNGKAEG  299 (449)
T ss_pred             CcEEEeeCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEEeeeecCCCceee
Confidence            3689999999999999999999999999999  9999999999988788899999999999999998886321  2  35


Q ss_pred             eeeEEE
Q 029301          187 LLGCHF  192 (195)
Q Consensus       187 ~lGi~l  192 (195)
                      .+|+..
T Consensus       300 ~iGi~~  305 (449)
T PRK10779        300 FAGVVP  305 (449)
T ss_pred             EEEEec
Confidence            688854

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=99.16  E-value=5.6e-10  Score=97.52  Aligned_cols=86  Identities=26%  Similarity=0.374  Sum_probs=71.9

Q ss_pred             cccCCceEEEEEc--------CCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301          106 IIRRPFAVIDEIT--------DASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV  177 (195)
Q Consensus       106 ~~~~~~~~V~~V~--------~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l  177 (195)
                      .+...++.|.+..        .+|||++|||++||+|++|||.+  +.+|+++.+++....++++.++|.|+|+..++.+
T Consensus       101 ~l~t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~--V~s~~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V  178 (402)
T TIGR02860       101 KLNTKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEK--IKNMDDLANLINKAGGEKLTLTIERGGKIIETVI  178 (402)
T ss_pred             EEecCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCeEEEEEEECCEEEEEEE
Confidence            3445677765542        26999999999999999999999  9999999999988778899999999999999999


Q ss_pred             Eec--cCCCceeeeEEEE
Q 029301          178 TPR--PWQGRGLLGCHFR  193 (195)
Q Consensus       178 ~~~--~~~~~~~lGi~l~  193 (195)
                      .|.  ..++.+.||++++
T Consensus       179 ~Pv~~~~d~~ykLGl~Vr  196 (402)
T TIGR02860       179 KPVKDKEEGRYRIGLYIR  196 (402)
T ss_pred             EEeeeCCCCCEEEEEEEE
Confidence            875  2246789999875

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.14  E-value=4.6e-10  Score=99.54  Aligned_cols=83  Identities=23%  Similarity=0.284  Sum_probs=70.4

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccCC-----
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPWQ-----  183 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~~-----  183 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.++.++...+.. ..++.+.++|.|+|+..++++++..+.     
T Consensus       257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~--i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~  334 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKP--ISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQAS  334 (428)
T ss_pred             CceEEEEccCCCChHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCcccc
Confidence            57899999999999999999999999999999  9999999998876 568899999999999998888765332     


Q ss_pred             -CceeeeEEEEe
Q 029301          184 -GRGLLGCHFRM  194 (195)
Q Consensus       184 -~~~~lGi~l~p  194 (195)
                       ....+|+.+.+
T Consensus       335 ~~~~~lGi~~~~  346 (428)
T TIGR02037       335 SSNPFLGLTVAN  346 (428)
T ss_pred             ccccccceEEec
Confidence             12457776654

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.10  E-value=4.1e-10  Score=74.67  Aligned_cols=55  Identities=29%  Similarity=0.376  Sum_probs=50.3

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVI  166 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V  166 (195)
                      .+++|.+|.++|||+.+||++||+|++|||.+  +.+|  +++...++...|+++.+++
T Consensus        13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          13 GGVVVLSVEPGSPAERAGLQAGDVILAVNGTD--VKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            47899999999999999999999999999999  8888  9999999887788888876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.08  E-value=4.4e-10  Score=100.35  Aligned_cols=103  Identities=15%  Similarity=0.044  Sum_probs=81.3

Q ss_pred             hhhhhhHhhHhHhh-hhhhhcccchhhh---hhhccccCCCCCCCCCCCCcccccccCCceEEEEEcCCChhhhcCCCCC
Q 029301           56 IHLVRSERRRLAGD-DGGSNNQNPSILG---TVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLG  131 (195)
Q Consensus        56 l~~vr~~r~~i~~l-~~~i~~~~~~~~~---~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~V~~V~~~SpA~~aGL~~G  131 (195)
                      -+.-+..++|++.+ .+.++|.+.++.-   .|...                   .....+.|.+|.++|||++|||++|
T Consensus        87 ~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~~~G-------------------~~~~~~lV~~V~~~SpA~kAGLk~G  147 (449)
T PRK10779         87 AFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVFIIG-------------------VPGVRPVVGEIAPNSIAAQAQIAPG  147 (449)
T ss_pred             hhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHHhcC-------------------cccCCccccccCCCCHHHHcCCCCC
Confidence            45667889999988 9999999776432   33211                   1112357899999999999999999


Q ss_pred             CEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEe
Q 029301          132 DQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTP  179 (195)
Q Consensus       132 D~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~  179 (195)
                      |+|++|||++  +.+|+++...+.. ..++++.++|.|+|+..+++++.
T Consensus       148 DvI~~vnG~~--V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l  194 (449)
T PRK10779        148 TELKAVDGIE--TPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTL  194 (449)
T ss_pred             CEEEEECCEE--cCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEe
Confidence            9999999999  9999999887765 46778999999999877666544

>PRK10139 serine endoprotease; Provisional

Probab=99.07  E-value=1.1e-09  Score=97.89  Aligned_cols=69  Identities=22%  Similarity=0.292  Sum_probs=63.6

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.+|+++...+.. ..|+++.++|.|+|+..++++++.
T Consensus       290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~--V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~  359 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLD  359 (455)
T ss_pred             CceEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEC
Confidence            47899999999999999999999999999999  9999999998876 678899999999999988888764

>PRK10898 serine endoprotease; Provisional

Probab=99.07  E-value=1.4e-09  Score=94.26  Aligned_cols=71  Identities=24%  Similarity=0.398  Sum_probs=65.2

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~  182 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.++.++...+.. ..|+.+.+++.|+|+..++.+++..|
T Consensus       279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~--V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~  350 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEY  350 (353)
T ss_pred             CeEEEEEECCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEeccC
Confidence            57899999999999999999999999999999  9999999988876 67889999999999999998887655

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=99.06  E-value=1.2e-09  Score=94.64  Aligned_cols=70  Identities=29%  Similarity=0.351  Sum_probs=64.2

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecc
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRP  181 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~  181 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.+++++...+.. ..|+++.++|.|+|+..++.+++..
T Consensus       278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~--V~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~  348 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAGILVRDVILKYDGKD--VIGAEELMDRIAETRPGSKVMVTVLRQGKQLELPVTIDE  348 (351)
T ss_pred             ccceEeecCCCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEecC
Confidence            47899999999999999999999999999999  9999999998876 6788999999999999988887753

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=99.04  E-value=1.7e-09  Score=89.97  Aligned_cols=67  Identities=16%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  178 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~  178 (195)
                      .+..|..+.++|||+++||++||+|++|||++  +.+++++...+.. ..++.+.++|.|+|+..++.+.
T Consensus       191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~--i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i~v~  258 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLD--LRDPEQAFQALQMLREETNLTLTVERDGQREDIYVR  258 (259)
T ss_pred             eEEEEEecCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEE
Confidence            57889999999999999999999999999999  9999999998887 5678999999999998887764

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK10942 serine endoprotease; Provisional

Probab=98.98  E-value=4e-09  Score=94.79  Aligned_cols=69  Identities=20%  Similarity=0.298  Sum_probs=62.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|..|.++|||++|||++||+|++|||++  +.+|+++...+.. ..++.+.++|.|+|+..++.+++.
T Consensus       311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~--V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~  380 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQ  380 (473)
T ss_pred             CceEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeC
Confidence            57899999999999999999999999999999  9999999998876 568899999999999888887653

>PRK10139 serine endoprotease; Provisional

Probab=98.93  E-value=6.9e-09  Score=92.84  Aligned_cols=65  Identities=25%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV  177 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l  177 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.+|+++...+.... +++.++|.|+|+...+.+
T Consensus       390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~--v~~~~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~  454 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDR--VNSIAEMRKVLAAKP-AIIALQIVRGNESIYLLL  454 (455)
T ss_pred             CceEEEEeCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence            36889999999999999999999999999999  999999999998754 689999999998877664

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=98.92  E-value=4.8e-09  Score=92.33  Aligned_cols=72  Identities=18%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             EEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE-ECCEEEEEEEEeccCCCceeeeEEE
Q 029301          114 IDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM-RQGGLINLAVTPRPWQGRGLLGCHF  192 (195)
Q Consensus       114 V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~-R~g~~~~~~l~~~~~~~~~~lGi~l  192 (195)
                      |.+|.|+|||+++||++||+|++|||++  +.+|.++..++.   +..+.++|. |+|+..++.+.+...   --||+.+
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~--V~Dw~D~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~~~d---edlG~~f   73 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVA--PRDLIDYQFLCA---DEELELEVLDANGESHQIEIEKDLD---EDLGLEF   73 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHhc---CCcEEEEEEcCCCeEEEEEEecCCC---CCCcEEe
Confidence            5679999999999999999999999999  999999888774   356888886 789888888877532   2466655


Q ss_pred             E
Q 029301          193 R  193 (195)
Q Consensus       193 ~  193 (195)
                      .
T Consensus        74 ~   74 (433)
T TIGR03279        74 T   74 (433)
T ss_pred             c
Confidence            3

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.88  E-value=1.1e-08  Score=90.67  Aligned_cols=65  Identities=28%  Similarity=0.412  Sum_probs=59.3

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLA  176 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~  176 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.+++++.+++.. ..++.+.++|.|+|+...+.
T Consensus       362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~--V~s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~~  427 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQP--VSSVAELRKVLDRAKKGGRVALLILRGGATIFVT  427 (428)
T ss_pred             CceEEEEeCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence            47899999999999999999999999999999  9999999999987 46889999999999877654

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.88  E-value=1.5e-08  Score=89.06  Aligned_cols=67  Identities=21%  Similarity=0.234  Sum_probs=58.2

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  179 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~  179 (195)
                      +++|..|.++|||+++||++||+|++|||++  +.  ++.++...+....|..+.++|.|+|+..+++++.
T Consensus       103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~--v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r  171 (389)
T PLN00049        103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTS--TEGLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTR  171 (389)
T ss_pred             cEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEe
Confidence            6889999999999999999999999999999  65  4578878887777889999999999877766643

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.87  E-value=7.6e-09  Score=89.04  Aligned_cols=67  Identities=27%  Similarity=0.330  Sum_probs=56.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVT  178 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~  178 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.+|  .++...+....|.++.+++.|+|+..+++++
T Consensus        62 ~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~  130 (334)
T TIGR00225        62 GEIVIVSPFEGSPAEKAGIKPGDKIIKINGKS--VAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFT  130 (334)
T ss_pred             CEEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEE
Confidence            45889999999999999999999999999999  8775  6777777777788999999998765544443

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.86  E-value=1.6e-08  Score=68.85  Aligned_cols=54  Identities=19%  Similarity=0.314  Sum_probs=47.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVI  166 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V  166 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.  +++++...+....+ ++.+.+
T Consensus        26 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~--i~~~~~~~~~~~l~~~~~-~v~l~v   81 (82)
T cd00992          26 GGIFVSRVEPGGPAERGGLRVGDRILEVNGVS--VEGLTHEEAVELLKNSGD-EVTLTV   81 (82)
T ss_pred             CCeEEEEECCCChHHhCCCCCCCEEEEECCEE--cCccCHHHHHHHHHhCCC-eEEEEE
Confidence            56899999999999999999999999999999  87  89999998887544 666654

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.83  E-value=2.2e-08  Score=68.43  Aligned_cols=55  Identities=16%  Similarity=0.300  Sum_probs=47.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      .+++|.+|.++|||+.+||++||.|++|||.+  +.  +..++...++...+ +++|+|+
T Consensus        25 ~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~--v~~~~~~~~~~~l~~~~~-~v~L~V~   81 (81)
T PF00595_consen   25 KGVFVSSVVPGSPAERAGLKVGDRILEINGQS--VRGMSHDEVVQLLKSASN-PVTLTVQ   81 (81)
T ss_dssp             EEEEEEEECTTSHHHHHTSSTTEEEEEETTEE--STTSBHHHHHHHHHHSTS-EEEEEEE
T ss_pred             CCEEEEEEeCCChHHhcccchhhhhheeCCEe--CCCCCHHHHHHHHHCCCC-cEEEEEC
Confidence            57899999999999999999999999999999  55  56777778877655 8888764

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PRK10942 serine endoprotease; Provisional

Probab=98.83  E-value=2.5e-08  Score=89.70  Aligned_cols=65  Identities=22%  Similarity=0.264  Sum_probs=58.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV  177 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l  177 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.+|+++.+.+.... +.+.++|.|+|..+.+.+
T Consensus       408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~--V~s~~dl~~~l~~~~-~~v~l~V~R~g~~~~v~~  472 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQP--VKNIAELRKILDSKP-SVLALNIQRGDSSIYLLM  472 (473)
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence            46889999999999999999999999999999  999999999998754 689999999998877654

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.80  E-value=2.8e-08  Score=67.72  Aligned_cols=58  Identities=31%  Similarity=0.470  Sum_probs=46.4

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHH--HHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAA--EGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~--~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+.+||++||+|++|||..  +.++.+...  .+.. .+..+.+.+.|++
T Consensus        26 ~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~--v~~~~~~~~~~~~~~-~~~~~~l~i~r~~   85 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTS--VEGLTHLEAVDLLKK-AGGKVTLTVLRGG   85 (85)
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Confidence            57999999999999999999999999999999  776544433  3333 3458888888864

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>TIGR00054 RIP metalloprotease RseP

Probab=98.65  E-value=6.4e-08  Score=85.84  Aligned_cols=101  Identities=16%  Similarity=0.028  Sum_probs=76.2

Q ss_pred             hhhhhhHhhHhHhh-hhhhhcccchhhh---hhhccccCCCCCCCCCCCCcccccccCCceEEEEEcCCChhhhcCCCCC
Q 029301           56 IHLVRSERRRLAGD-DGGSNNQNPSILG---TVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLG  131 (195)
Q Consensus        56 l~~vr~~r~~i~~l-~~~i~~~~~~~~~---~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~V~~V~~~SpA~~aGL~~G  131 (195)
                      -+.-+..+.|++.+ .+.++|.+.+.+-   .|...               .  .....+++|.+|.++|||++|||++|
T Consensus        87 ~f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~~~G---------------~--~~~~~g~~V~~V~~~SpA~~AGL~~G  149 (420)
T TIGR00054        87 LFNNKSVFQKAIIIFAGPLANFIFAIFVYIFISLIG---------------V--PGYEVGPVIELLDKNSIALEAGIEPG  149 (420)
T ss_pred             hhccCCHHHHHHhhhcccHHHHHHHHHHHHHHHhcC---------------C--ccCCCCceeeccCCCCHHHHcCCCCC
Confidence            45556777777777 8888888765432   22111               0  00135678999999999999999999


Q ss_pred             CEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEE
Q 029301          132 DQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLA  176 (195)
Q Consensus       132 D~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~  176 (195)
                      |+|+++||++  +.+++++...+.... .++.+.+.|+++..++.
T Consensus       150 DvI~~vng~~--v~~~~dl~~~ia~~~-~~v~~~I~r~g~~~~l~  191 (420)
T TIGR00054       150 DEILSVNGNK--IPGFKDVRQQIADIA-GEPMVEILAERENWTFE  191 (420)
T ss_pred             CEEEEECCEE--cCCHHHHHHHHHhhc-ccceEEEEEecCceEec
Confidence            9999999999  999999999887755 67889999877665543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.57  E-value=3.2e-07  Score=81.02  Aligned_cols=68  Identities=25%  Similarity=0.358  Sum_probs=56.7

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ--GGLINLAV  177 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~--g~~~~~~l  177 (195)
                      -...|.++.+++||++|||++||.|++|||.++.-.+.+++...++..+|..++|++.|.  ++.+++++
T Consensus       112 ~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l  181 (406)
T COG0793         112 GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTL  181 (406)
T ss_pred             CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEE
Confidence            668899999999999999999999999999992223357788888889999999999996  44555554

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=9.3e-07  Score=76.37  Aligned_cols=72  Identities=28%  Similarity=0.299  Sum_probs=65.4

Q ss_pred             cCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecc
Q 029301          108 RRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRP  181 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~  181 (195)
                      ...++.|.+|.++|||+++|++.||+|+++||.+  +.+..++...+.. ..|..+.+.+.|+|+..++.++...
T Consensus       268 ~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~--v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~l~~  340 (347)
T COG0265         268 VAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKP--VASLSDLVAAVASNRPGDEVALKLLRGGKERELAVTLGD  340 (347)
T ss_pred             CCCceEEEecCCCChHHHcCCCCCCEEEEECCEE--ccCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEEEecC
Confidence            3567899999999999999999999999999999  9999999998876 5699999999999999999887754

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.36  E-value=1.9e-06  Score=80.23  Aligned_cols=69  Identities=22%  Similarity=0.328  Sum_probs=54.7

Q ss_pred             CceEEEEEcCCChhhhc-CCCCCCEEEEEC--Cee-CCC--CcHHHHHHHHhhCCCCeEEEEEEEC---CEEEEEEEE
Q 029301          110 PFAVIDEITDASPAAED-GLQLGDQVLKFG--TVE-AGD--NLLERLAAEGRKNQGNAVPVVIMRQ---GGLINLAVT  178 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~in--g~~-~~v--~~~~~l~~~l~~~~g~~v~l~V~R~---g~~~~~~l~  178 (195)
                      .+.+|.+|.|||||+++ ||++||+|++||  |.+ ..+  .+++++...|++..|.+|.|+|.|+   +...+++++
T Consensus       255 ~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~  332 (667)
T PRK11186        255 DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLT  332 (667)
T ss_pred             CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEE
Confidence            45788999999999998 999999999999  443 112  3466888899888999999999983   455666654

>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=2.1e-06  Score=74.87  Aligned_cols=78  Identities=24%  Similarity=0.431  Sum_probs=66.7

Q ss_pred             EEEEEcCCChhhhcCCCC-CCEEEEE-CCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEEEEec-cCCCcee
Q 029301          113 VIDEITDASPAAEDGLQL-GDQVLKF-GTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ--GGLINLAVTPR-PWQGRGL  187 (195)
Q Consensus       113 ~V~~V~~~SpA~~aGL~~-GD~I~~i-ng~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~--g~~~~~~l~~~-~~~~~~~  187 (195)
                      .|.+|.++|||+.|||++ +|.|+.+ +.+-   ...+|+..+|..+.++++.+.|+.-  +..++++++|. .|+|.|.
T Consensus       112 Hvl~V~p~SPaalAgl~~~~DYivG~~~~~~---~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGgeg~  188 (462)
T KOG3834|consen  112 HVLSVEPNSPAALAGLRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGA  188 (462)
T ss_pred             eeeecCCCCHHHhcccccccceEecchhhhc---cchHHHHHHHHhccCCCcceeEeecCCCccceEEeeccccccccce
Confidence            477999999999999995 7999999 5544   6788999999999999999999863  45688999987 7999999


Q ss_pred             eeEEEE
Q 029301          188 LGCHFR  193 (195)
Q Consensus       188 lGi~l~  193 (195)
                      |||.|.
T Consensus       189 lGCgIG  194 (462)
T KOG3834|consen  189 LGCGIG  194 (462)
T ss_pred             eccccc
Confidence            999764

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=98.24  E-value=6.6e-06  Score=68.86  Aligned_cols=62  Identities=13%  Similarity=0.236  Sum_probs=51.6

Q ss_pred             EEcCC---ChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEe
Q 029301          116 EITDA---SPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTP  179 (195)
Q Consensus       116 ~V~~~---SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~  179 (195)
                      .+.|+   +-..++|||+||++++|||.+  ..+.++..++++. .....++|+|+|+|+..++.+..
T Consensus       210 rl~Pgkd~~lF~~~GLq~GDva~sING~d--L~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~i~l  275 (276)
T PRK09681        210 AVKPGADRSLFDASGFKEGDIAIALNQQD--FTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIAL  275 (276)
T ss_pred             EECCCCcHHHHHHcCCCCCCEEEEeCCee--CCCHHHHHHHHHHhccCCeEEEEEEECCEEEEEEEEc
Confidence            34565   345789999999999999999  9999888888876 56778999999999998887643

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=98.15  E-value=1.8e-05  Score=55.38  Aligned_cols=65  Identities=20%  Similarity=0.153  Sum_probs=45.9

Q ss_pred             CceEEEEEcCC--------ChhhhcCCC--CCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC-EEEEEE
Q 029301          110 PFAVIDEITDA--------SPAAEDGLQ--LGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINLA  176 (195)
Q Consensus       110 ~~~~V~~V~~~--------SpA~~aGL~--~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g-~~~~~~  176 (195)
                      -+..|..+.++        ||..+.|+.  +||.|++|||++  +..-.++..+|.+..|+.+.|+|.+.+ ..+++.
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~--v~~~~~~~~lL~~~agk~V~Ltv~~~~~~~R~v~   87 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQP--VTADANPYRLLEGKAGKQVLLTVNRKPGGARTVV   87 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE---BTTB-HHHHHHTTTTSEEEEEEE-STT-EEEEE
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEE--CCCCCCHHHHhcccCCCEEEEEEecCCCCceEEE
Confidence            44566666664        888888865  999999999999  888888999999999999999999865 455554

>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]

Probab=98.14  E-value=3e-06  Score=60.02  Aligned_cols=51  Identities=16%  Similarity=0.181  Sum_probs=40.1

Q ss_pred             cccCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh
Q 029301          106 IIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK  156 (195)
Q Consensus       106 ~~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~  156 (195)
                      .....+.+|..|.++|||+.|||+.+|+|+++||...+.-+.+...+++..
T Consensus        55 ~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k  105 (124)
T KOG3553|consen   55 SYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK  105 (124)
T ss_pred             CcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence            345578999999999999999999999999999988223345555555544

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]

Probab=98.09  E-value=2.6e-05  Score=71.71  Aligned_cols=66  Identities=26%  Similarity=0.351  Sum_probs=60.8

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+|..|.++|||++. |++||++++||+.-  +.++.++.+.+....|+.+.++|+|+|+..+++++.+
T Consensus       305 LvV~~vL~~gpa~k~-Le~GDillavN~t~--l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvq  370 (955)
T KOG1421|consen  305 LVVETVLPEGPAEKK-LEPGDILLAVNSTC--LNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQ  370 (955)
T ss_pred             EEEEEeccCCchhhc-cCCCcEEEEEccee--hHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEec
Confidence            578899999999998 99999999999999  8899999999988899999999999999988888765

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=97.71  E-value=6.9e-05  Score=67.20  Aligned_cols=62  Identities=23%  Similarity=0.387  Sum_probs=49.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      -+.+|..|.++|||..|||.+||.|++|||..   ..+.      ..+.+..+.+.+.|.|..+++.+++.
T Consensus       462 g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s---~~l~------~~~~~d~i~v~~~~~~~L~e~~v~~~  523 (558)
T COG3975         462 GHEKITFVFPGGPAYKAGLSPGDKIVAINGIS---DQLD------RYKVNDKIQVHVFREGRLREFLVKLG  523 (558)
T ss_pred             CeeEEEecCCCChhHhccCCCccEEEEEcCcc---cccc------ccccccceEEEEccCCceEEeecccC
Confidence            44588999999999999999999999999984   1111      12467789999999998888776553

>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.00018  Score=63.04  Aligned_cols=80  Identities=23%  Similarity=0.326  Sum_probs=61.4

Q ss_pred             CceEEEEEcCCChhhhcCCCC-CCEEEEECCeeCCCCcHHH-HHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-cCCC
Q 029301          110 PFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLER-LAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQG  184 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~-GD~I~~ing~~~~v~~~~~-l~~~l~~~~g~~v~l~V~R--~g~~~~~~l~~~-~~~~  184 (195)
                      .+..|..|.++|||.+|||.+ -|.|++|||..  .+.-+| |...++.+..+ ++++|..  .-..+.+.+++. .|.|
T Consensus        15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~r--L~~dnd~Lk~llk~~sek-Vkltv~n~kt~~~R~v~I~ps~~wgg   91 (462)
T KOG3834|consen   15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIR--LNKDNDTLKALLKANSEK-VKLTVYNSKTQEVRIVEIVPSNNWGG   91 (462)
T ss_pred             eeEEEEEeecCChHHhcCcchhhhhhheeCccc--ccCchHHHHHHHHhcccc-eEEEEEecccceeEEEEecccccccc
Confidence            456788999999999999998 69999999999  665444 44455555444 8998875  345677888887 7988


Q ss_pred             ceeeeEEEE
Q 029301          185 RGLLGCHFR  193 (195)
Q Consensus       185 ~~~lGi~l~  193 (195)
                      . +||+.++
T Consensus        92 q-llGvsvr   99 (462)
T KOG3834|consen   92 Q-LLGVSVR   99 (462)
T ss_pred             c-ccceEEE
Confidence            7 8998765

>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.0004  Score=62.14  Aligned_cols=68  Identities=22%  Similarity=0.246  Sum_probs=59.5

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEec
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+.|..|.|++++...|+.+||+|++|||++  +.+..++...+... ....+.+..+|..+..++.+.+.
T Consensus       399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~--V~n~~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il~~  467 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKP--VKNLKHLYELIEECSTEDKVAVLDRRSAEDATLEILPE  467 (473)
T ss_pred             EEEEEEeccCCCcccccccCCCEEEEECCEE--eechHHHHHHHHhcCcCceEEEEEecCccceeEEeccc
Confidence            4678899999999999999999999999999  99999999999874 45677777778888888888765

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=97.50  E-value=0.00034  Score=57.09  Aligned_cols=58  Identities=19%  Similarity=0.227  Sum_probs=50.0

Q ss_pred             cCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEE
Q 029301          118 TDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAV  177 (195)
Q Consensus       118 ~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l  177 (195)
                      .++|..+..|||.||+.+++|+.+  ..+.+++..+++. ..-..+.++|.|+|....+.+
T Consensus       215 kd~slF~~sglq~GDIavaiNnld--ltdp~~m~~llq~l~~m~s~qlTv~R~G~rhdInV  273 (275)
T COG3031         215 KDGSLFYKSGLQRGDIAVAINNLD--LTDPEDMFRLLQMLRNMPSLQLTVIRRGKRHDINV  273 (275)
T ss_pred             CCcchhhhhcCCCcceEEEecCcc--cCCHHHHHHHHHhhhcCcceEEEEEecCccceeee
Confidence            456888999999999999999999  9999999998886 444679999999998877665

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=97.19  E-value=0.0025  Score=55.28  Aligned_cols=68  Identities=22%  Similarity=0.352  Sum_probs=55.9

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCe---EEEEEEE-CCEE--------EEEEEE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNA---VPVVIMR-QGGL--------INLAVT  178 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~---v~l~V~R-~g~~--------~~~~l~  178 (195)
                      .+.+.++..+|+|..+|+++||.|+++|+.+  +.+|+++...+....+..   +.+.+.| ++..        ..+.+.
T Consensus       130 ~~~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  207 (375)
T COG0750         130 SPVVGEVAPKSAAALAGLRPGDRIVAVDGEK--VASWDDVRRLLVAAAGDVFNLLTILVIRLDGEAHAVAAEIIKSLGLT  207 (375)
T ss_pred             cCeeeecCCCCHHHHcCCCCCCEEEeECCEE--ccCHHHHHHHHHhccCCcccceEEEEEeccceeeeccccceeeEeee
Confidence            3455579999999999999999999999999  999999998887766655   7888889 6666        455666


Q ss_pred             ec
Q 029301          179 PR  180 (195)
Q Consensus       179 ~~  180 (195)
                      |.
T Consensus       208 P~  209 (375)
T COG0750         208 PV  209 (375)
T ss_pred             cc
Confidence            63

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=97.08  E-value=0.00059  Score=62.22  Aligned_cols=56  Identities=29%  Similarity=0.348  Sum_probs=43.6

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc---HHHHHHHHhhCCCCeEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL---LERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~---~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      .+.+|.+|.++|||++-||+.||.|++||.++  +.+   -+.+..+|.-.+|+.++|.-.
T Consensus       429 VGIFVaGvqegspA~~eGlqEGDQIL~VN~vd--F~nl~REeAVlfLL~lPkGEevtilaQ  487 (1027)
T KOG3580|consen  429 VGIFVAGVQEGSPAEQEGLQEGDQILKVNTVD--FRNLVREEAVLFLLELPKGEEVTILAQ  487 (1027)
T ss_pred             eeEEEeecccCCchhhccccccceeEEecccc--chhhhHHHHHHHHhcCCCCcEEeehhh
Confidence            46789999999999999999999999999999  544   333444444467888877544

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=96.91  E-value=0.0017  Score=60.23  Aligned_cols=60  Identities=23%  Similarity=0.341  Sum_probs=46.9

Q ss_pred             cCCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          108 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ..|..-|..|.+||||++-| |++||.|++|||+.+--.+..++..+|+. .|-+|+|+|.-
T Consensus       776 ~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKd-aGlsVtLtIip  836 (984)
T KOG3209|consen  776 NKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKD-AGLSVTLTIIP  836 (984)
T ss_pred             cCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHh-cCceEEEEEcC
Confidence            34556688999999999976 99999999999999222346788888876 46688888764

>PF12812 PDZ_1: PDZ-like domain

Probab=96.69  E-value=0.0071  Score=41.26  Aligned_cols=45  Identities=16%  Similarity=0.094  Sum_probs=39.1

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCC
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ  158 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~  158 (195)
                      .++.....++++..-|+..|.+|.+||+++  +.++++|.+.+++-+
T Consensus        32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kp--t~~Ld~f~~vvk~ip   76 (78)
T PF12812_consen   32 GVYVAVSGGSLAFAGGISKGFIITSVNGKP--TPDLDDFIKVVKKIP   76 (78)
T ss_pred             EEEEEecCCChhhhCCCCCCeEEEeECCcC--CcCHHHHHHHHHhCC
Confidence            555577889999877799999999999999  999999999988644

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=96.64  E-value=0.0054  Score=56.87  Aligned_cols=54  Identities=17%  Similarity=0.223  Sum_probs=45.6

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      +.|-.|.+|+||.++.|++||++++|||.+  +.+.+++.+.++...+. +.+.+.|
T Consensus       400 v~v~tv~~ns~a~k~~~~~gdvlvai~~~p--i~s~~q~~~~~~s~~~~-~~~l~~~  453 (1051)
T KOG3532|consen  400 VKVCTVEDNSLADKAAFKPGDVLVAINNVP--IRSERQATRFLQSTTGD-LTVLVER  453 (1051)
T ss_pred             EEEEEecCCChhhHhcCCCcceEEEecCcc--chhHHHHHHHHHhcccc-eEEEEee
Confidence            567899999999999999999999999999  99999999999876553 4444443

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=96.12  E-value=0.0063  Score=56.53  Aligned_cols=56  Identities=21%  Similarity=0.261  Sum_probs=42.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHH--HHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~--~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      -+.+|.+|.|+|.|+.+||+.||.|++|||+.  +.++.  ...++|.++  ..++++|..+
T Consensus       562 fgifV~~V~pgskAa~~GlKRgDqilEVNgQn--fenis~~KA~eiLrnn--thLtltvKtN  619 (1283)
T KOG3542|consen  562 FGIFVAEVFPGSKAAREGLKRGDQILEVNGQN--FENISAKKAEEILRNN--THLTLTVKTN  619 (1283)
T ss_pred             ceeEEeeecCCchHHHhhhhhhhhhhhccccc--hhhhhHHHHHHHhcCC--ceEEEEEecc
Confidence            35789999999999999999999999999999  55543  333455443  4566666543

>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]

Probab=96.10  E-value=0.022  Score=43.57  Aligned_cols=55  Identities=25%  Similarity=0.320  Sum_probs=42.5

Q ss_pred             eEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          112 AVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       112 ~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      .+|..+.||+.|..- ||+.||.++++||....-...+...++++...| .+.+.|+
T Consensus       117 iyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g-svklvvr  172 (207)
T KOG3550|consen  117 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG-SVKLVVR  172 (207)
T ss_pred             eEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC-cEEEEEe
Confidence            789999999999875 899999999999998223346667777777655 5666553

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=96.05  E-value=0.01  Score=54.40  Aligned_cols=68  Identities=24%  Similarity=0.293  Sum_probs=51.6

Q ss_pred             eEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          112 AVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       112 ~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+|.++...+-|++ -+|+.||+|++|||......++.|...+|....| .+.+.|+|+....-+.+++.
T Consensus       221 IFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~G-KL~lvVlRD~~qtLiNiP~l  289 (1027)
T KOG3580|consen  221 IFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRDSQQTLINIPSL  289 (1027)
T ss_pred             hhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccC-ceEEEEEecCCceeeecCCC
Confidence            45666666666655 5799999999999988334568888888888776 68899999877666666553

>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]

Probab=95.85  E-value=0.028  Score=47.63  Aligned_cols=57  Identities=21%  Similarity=0.321  Sum_probs=44.2

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      |..+|..|..++||++-| ++.||.|++|||....-.+-.++.+.++...+ ++.+.+-
T Consensus        30 PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~-eV~IhyN   87 (429)
T KOG3651|consen   30 PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLN-EVKIHYN   87 (429)
T ss_pred             CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhcc-ceEEEeh
Confidence            778999999999999886 89999999999999323345677777776554 5666653

>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]

Probab=95.73  E-value=0.017  Score=55.27  Aligned_cols=55  Identities=24%  Similarity=0.347  Sum_probs=45.0

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ++|..|.+|+|+... |++||.|+.|||.++.-..|+.+.++++..+ ..|.++|.+
T Consensus        77 viVr~VT~GGps~GK-L~PGDQIl~vN~Epv~daprervIdlvRace-~sv~ltV~q  131 (1298)
T KOG3552|consen   77 VIVRFVTEGGPSIGK-LQPGDQILAVNGEPVKDAPRERVIDLVRACE-SSVNLTVCQ  131 (1298)
T ss_pred             eEEEEecCCCCcccc-ccCCCeEEEecCcccccccHHHHHHHHHHHh-hhcceEEec
Confidence            678899999999876 9999999999999933345899999988754 357777766

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=95.65  E-value=0.032  Score=52.19  Aligned_cols=61  Identities=21%  Similarity=0.328  Sum_probs=48.4

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~  169 (195)
                      -.|..|.+|.+++||++-| |+.||+|+.|||..+--.+..++.+.++. ..|..+.|++.|+
T Consensus       370 DefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRg  432 (984)
T KOG3209|consen  370 DEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRG  432 (984)
T ss_pred             CceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecC
Confidence            3467899999999999987 79999999999998222345666677765 4589999999885

>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]

Probab=95.32  E-value=0.032  Score=51.63  Aligned_cols=61  Identities=26%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             cCCceEEEEEcCCChhhhcC-CCCCCEEEEECCee-CCCCcHHHHHHHHhhCCCC-eEEEEEEEC
Q 029301          108 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQGN-AVPVVIMRQ  169 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~-~~v~~~~~l~~~l~~~~g~-~v~l~V~R~  169 (195)
                      ..|.++|.....++||++.| |-.||.|++|||.. +.. -+..-+.+|++.+++ .|+++|.+.
T Consensus       671 mLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGL-PLstcQs~Ik~~KnQT~VkltiV~c  734 (829)
T KOG3605|consen  671 ILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGL-PLSTCQSIIKGLKNQTAVKLNIVSC  734 (829)
T ss_pred             cchHHHHHhcccCChhhhcCCccccceeEeecCceeccc-cHHHHHHHHhcccccceEEEEEecC
Confidence            34777788888999999987 89999999999998 211 245556677764443 456665554

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=93.80  E-value=0.12  Score=50.57  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             EEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhh
Q 029301          113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRK  156 (195)
Q Consensus       113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~  156 (195)
                      .|..|.++|||..||+++||.|+.+||..  +.  ...++.+++.+
T Consensus       661 ~v~sv~egsPA~~agls~~DlIthvnge~--v~gl~H~ev~~Lll~  704 (1205)
T KOG0606|consen  661 SVGSVEEGSPAFEAGLSAGDLITHVNGEP--VHGLVHTEVMELLLK  704 (1205)
T ss_pred             eeeeecCCCCccccCCCccceeEeccCcc--cchhhHHHHHHHHHh
Confidence            47889999999999999999999999999  54  46677776654

>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]

Probab=92.94  E-value=0.32  Score=40.81  Aligned_cols=59  Identities=19%  Similarity=0.317  Sum_probs=47.5

Q ss_pred             cCCceEEEEEcCCChhhhcCC-CCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          108 RRPFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aGL-~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      ..|+.+|....||+-|+..|| ...|.|++|||+...-++++++...+..+. ..+.++|+
T Consensus       192 kvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANs-hNLIiTVk  251 (358)
T KOG3606|consen  192 KVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANS-HNLIITVK  251 (358)
T ss_pred             ccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcc-cceEEEec
Confidence            468999999999999999997 569999999999944568999988776543 34566664

>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]

Probab=91.82  E-value=0.34  Score=47.12  Aligned_cols=61  Identities=30%  Similarity=0.397  Sum_probs=46.5

Q ss_pred             cCCceEEEEEcCCChhhhcC-CCCCCEEEEECCee-CCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          108 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~-~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ...+.+|.+|.+|++|..-| |++||.+++|||.. +.+ +-+...+++. ..|..|.+.|...|
T Consensus       958 ~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGi-sQErAA~lmt-rtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen  958 RKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGI-SQERAARLMT-RTGNVVHLEVAKQG 1020 (1629)
T ss_pred             cccceEEEEeccCCccccccccccCceeeeecCcccccc-cHHHHHHHHh-ccCCeEEEehhhhh
Confidence            45789999999999998776 89999999999999 333 3445555554 45678888887544

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]

Probab=91.00  E-value=1  Score=42.51  Aligned_cols=69  Identities=17%  Similarity=0.077  Sum_probs=55.8

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCC-CCeEEEEEE-ECCEEEEEEEEec
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ-GNAVPVVIM-RQGGLINLAVTPR  180 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~-g~~v~l~V~-R~g~~~~~~l~~~  180 (195)
                      ..+++|.....+|||-+ +|++--.|++|||..  ..++++|...+...+ +.-+.+... ++|-..-+++.+.
T Consensus       861 p~gvyvt~rg~gspalq-~l~aa~fitavng~~--t~~lddf~~~~~~ipdnsyv~v~~mtfd~vp~~~s~k~n  931 (955)
T KOG1421|consen  861 PEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHD--TNTLDDFYHMLLEIPDNSYVQVKQMTFDGVPSIVSVKPN  931 (955)
T ss_pred             CCceEEeecccCChhHh-hcchheeEEEecccc--cCcHHHHHHHHhhCCCCceEEEEEeccCCCceEEEeccC
Confidence            36889999999999999 899999999999999  999999999888754 444555433 5777777777664

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=90.40  E-value=0.59  Score=42.56  Aligned_cols=56  Identities=23%  Similarity=0.419  Sum_probs=45.2

Q ss_pred             ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      .++|..+..|+.+.+.| |+.||.|..+||....-.+..++...+.+..| ++++.+.
T Consensus       147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G-~itfkii  203 (542)
T KOG0609|consen  147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG-SITFKII  203 (542)
T ss_pred             ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC-cEEEEEc
Confidence            47788889999999888 58999999999999434568899999988665 6777664

>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]

Probab=90.08  E-value=0.56  Score=40.71  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=44.2

Q ss_pred             eEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          112 AVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      ++|..+.++-.|+..| |=.||-|++|||....--..+++..+|++ .|+.++++|.
T Consensus        82 vviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN-AGdeVtlTV~  137 (505)
T KOG3549|consen   82 VVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN-AGDEVTLTVK  137 (505)
T ss_pred             EEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh-cCCEEEEEeH
Confidence            6788999999999888 46899999999998222347888888876 5678888885

>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]

Probab=89.45  E-value=0.93  Score=41.14  Aligned_cols=59  Identities=15%  Similarity=0.200  Sum_probs=40.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCee-CCCCcHHHHHHHHhh--CCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRK--NQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~-~~v~~~~~l~~~l~~--~~g~~v~l~V~R~  169 (195)
                      -+.+|.++.+++.-+.-| |.+||.|++||... .+..+- +....|+.  +...+++++|-..
T Consensus       277 ggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd-~AVrvLREaV~~~gPi~ltvAk~  339 (626)
T KOG3571|consen  277 GGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSND-QAVRVLREAVSRPGPIKLTVAKC  339 (626)
T ss_pred             CceEEeeeccCceeeccCccCccceEEEeeecchhhcCch-HHHHHHHHHhccCCCeEEEEeec
Confidence            568899999987665554 99999999999998 333333 34444443  2223688888653

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=88.32  E-value=0.84  Score=40.28  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=34.2

Q ss_pred             CceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCCcHHHHHHHHh
Q 029301          110 PFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGR  155 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~~~~~l~~~l~  155 (195)
                      .++.|.+|...||+.. -||.+||+|+++||-+  +.+.+|-.+.++
T Consensus       220 ~gV~Vtev~~~Spl~gprGL~vgdvitsldgcp--V~~v~dW~ecl~  264 (484)
T KOG2921|consen  220 EGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCP--VHKVSDWLECLA  264 (484)
T ss_pred             ceEEEEeccccCCCcCcccCCccceEEecCCcc--cCCHHHHHHHHH
Confidence            4578999999999854 3999999999999999  666555444444

>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]

Probab=86.36  E-value=0.81  Score=40.27  Aligned_cols=55  Identities=22%  Similarity=0.327  Sum_probs=40.9

Q ss_pred             eEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          112 AVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      ..|..+.+|-.|.++| |..||.|++|||.+..-.+.++..+.|+. .|+.+.+.|+
T Consensus       112 IlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKr-aGkeV~levK  167 (506)
T KOG3551|consen  112 ILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKR-AGKEVLLEVK  167 (506)
T ss_pred             eehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHh-hCceeeeeee
Confidence            5678888998898875 89999999999998223356666677754 5677766654

>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised

Probab=83.48  E-value=1.6  Score=34.58  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=26.9

Q ss_pred             cCCceEEEEEcCCChhhhcCCCCCCEEEEEC
Q 029301          108 RRPFAVIDEITDASPAAEDGLQLGDQVLKFG  138 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aGL~~GD~I~~in  138 (195)
                      .-....|..|..||||+++|+.-|+.|+++-
T Consensus       120 e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~  150 (183)
T PF11874_consen  120 EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE  150 (183)
T ss_pred             eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence            3355789999999999999999999999874

This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	5e-08
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	3e-06
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	3e-06
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	1e-05
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	6e-05
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	6e-05
4fgm_A	597	Aminopeptidase N family protein; structural genomi	9e-05
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	1e-04
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	3e-04
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	4e-04
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	5e-04
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	5e-04
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	7e-04
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	6e-04

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91

 Score = 47.9 bits (114), Expect = 5e-08
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 171
            V++ +   S A+  GLQ GD+++                   R N G ++ + I RQG 
Sbjct: 6   PVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGS 63

Query: 172 LINLAVTPRPWQGRG 186
            ++L + P    G G
Sbjct: 64  PLSLTLIPESXPGNG 78

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
            +I ++   SPA   GL+ GD +L  G   V+  +++ E +         + + V I R 
Sbjct: 37  VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT------QSQLAVQIRRG 90

Query: 170 GGLINLAVTPRPWQGRGLLG 189
              + L VTP   +G G   
Sbjct: 91  RETLTLYVTPEVTEGGGWTM 110

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
             + E+   SP+   G+Q GD ++K     +     L E +         + + + + R 
Sbjct: 37  IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVL------TESPLLLEVRRG 90

Query: 170 GGLINLAVTPRPWQGRG 186
              +  ++ P    G G
Sbjct: 91  NDDLLFSIAPEVVMGGG 107

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 113 VIDEITDASPAAEDGLQ-LGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 171
            + E+   SPAA  GL+   D ++   TV      L  L      ++   + + +     
Sbjct: 115 HVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLI---ETHEAKPLKLYVYNTDT 171

Query: 172 LINLAVTPRP---WQGRGLLGCHFR 193
                V   P   W G G LGC   
Sbjct: 172 DNCREVIITPNSAWGGEGSLGCGIG 196

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
            +I ++   SPA   GL+ GD +L  G   V+  +++ E +         + + V I R 
Sbjct: 258 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT------QSQLAVQIRRG 311

Query: 170 GGLINLAVTP 179
              + L VTP
Sbjct: 312 RETLTLYVTP 321

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
           A I E+   +PA   GL+  D ++     +V + +++ + +       + + + +V+ R 
Sbjct: 256 AYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIK------RESTLNMVVRRG 309

Query: 170 GGLINLAVTP 179
              I + V P
Sbjct: 310 NEDIMITVIP 319

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 92  AVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKF-GTVEAGDNLLERL 150
           A  + +                +  +     A   GL  GD+++          ++   L
Sbjct: 478 ASEQPARVNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRIL 537

Query: 151 AAEGRKNQGNAVPVVIMRQGGLINLAVTPRP 181
               R   G+ V +   R+  L+ L +T + 
Sbjct: 538 E---RYIPGDTVTIHAFRRDELMTLELTWQE 565

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
            V++E++   PAA  G+Q+ D ++        +    ++++A       G+ +PVV+MR 
Sbjct: 246 IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVA---EIRPGSVIPVVVMRD 302

Query: 170 GGLINLAVT 178
              + L VT
Sbjct: 303 DKQLTLQVT 311

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
           A + E+   S +A+ G++ GD +       + +   L  R+A       G  V + ++R 
Sbjct: 265 AFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTE---PGTKVKLGLLRN 321

Query: 170 GGLINLAVT 178
           G  + + VT
Sbjct: 322 GKPLEVEVT 330

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
           A + E+   S +A+ G++ GD +       + +   L  R+A       G  V + ++R 
Sbjct: 265 AFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTE---PGTKVKLGLLRN 321

Query: 170 GGLINLAVT 178
           G  + + VT
Sbjct: 322 GKPLEVEVT 330

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
           A I E+     AA  G+  G  V K     + + D L+  + +   K  G  V +     
Sbjct: 244 AKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRS---KAPGATVALTFQDP 300

Query: 170 GG 171
            G
Sbjct: 301 SG 302

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
           A + ++   S AA+ G++ GD +       + +   L  ++        G+ + + ++R 
Sbjct: 288 AFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMP---VGSKLTLGLLRD 344

Query: 170 GGLINLAVT 178
           G  +N+ + 
Sbjct: 345 GKQVNVNLE 353

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 81  LGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTV 140
           L        +++   N     ++    +    V++ +   +PAA+ GL+ GD ++     
Sbjct: 354 LQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQ 413

Query: 141 EAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 177
              +   L ++           + + I R    I L +
Sbjct: 414 AVKNIAELRKVLDSKPS----VLALNIQRGDSTIYLLM 447

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
           A++ ++   SPA   GL+ GD + +     +     +   ++       G+ V +++ R 
Sbjct: 284 ALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLR---VGSTVKIIVERD 340

Query: 170 GGLINLAVT 178
              + L+  
Sbjct: 341 NKPLTLSAV 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	99.64
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	99.55
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	99.55
2kl1_A	94	YLBL protein; structure genomics, structural genom	99.52
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	99.5
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	99.44
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.43
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	99.43
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	99.4
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	99.39
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	99.38
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.37
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.36
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	99.35
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.33
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.32
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.32
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.31
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.31
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.31
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.3
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.29
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.27
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.25
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.25
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.24
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.23
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.23
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.22
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.22
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.2
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.2
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.2
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.2
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.19
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.18
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.18
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.18
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.18
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.17
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.17
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.17
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.17
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.17
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.17
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.17
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.16
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.16
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.16
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.16
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.16
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.16
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.16
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.15
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.15
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.15
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.15
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.15
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.15
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.15
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.14
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.14
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.14
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.14
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.14
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.13
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.13
2ego_A	96	General receptor for phosphoinositides 1- associat	99.13
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.13
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.12
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.12
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.12
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.12
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.12
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.11
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.11
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.11
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.1
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.1
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.1
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.1
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.1
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.1
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.1
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.1
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.1
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.09
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.09
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.09
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.09
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.08
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.08
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.08
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.08
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.08
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.08
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.08
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.08
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.07
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.07
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.07
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.07
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.07
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.07
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.07
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.06
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.06
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.06
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.06
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.05
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.05
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.05
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.05
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.05
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.05
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.04
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.04
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.04
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.04
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.04
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.04
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.04
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.03
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.03
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.03
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.03
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.03
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.02
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.02
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.02
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.02
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.02
4fgm_A	597	Aminopeptidase N family protein; structural genomi	99.01
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.0
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.0
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.0
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.0
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.0
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.99
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.99
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.99
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.99
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.98
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.98
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.97
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.97
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.97
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.97
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.97
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.97
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.97
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.96
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.96
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.95
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.95
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.95
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.95
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.95
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.94
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.93
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.93
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.93
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.93
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.92
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.92
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.92
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.91
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.91
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.91
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.91
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.9
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.89
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.88
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.88
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.88
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.87
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.87
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.87
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.87
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.86
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.8
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.79
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.78
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.77
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.76
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.76
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.75
3k50_A	403	Putative S41 protease; structural genomics, joint	98.69
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.69
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.64
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.64
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.6
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.03
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.55
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.39
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.38
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.36
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.27
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.2
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.79
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.74
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	93.89
3m48_A	33	General control protein GCN4; leucine zipper, synt	92.91
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	92.83
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	91.38
1uo4_A	34	General control protein GCN4; four helix bundle, c	91.06
2bni_A	34	General control protein GCN4; four helix bundle, a	90.96
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	90.75
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	88.87
2hy6_A	34	General control protein GCN4; protein design, para	88.48
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	87.83
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	87.66

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=99.64  E-value=3.3e-15  Score=105.83  Aligned_cols=84  Identities=13%  Similarity=0.111  Sum_probs=73.8

Q ss_pred             ccCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC--C
Q 029301          107 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW--Q  183 (195)
Q Consensus       107 ~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~--~  183 (195)
                      ....+++|.+|.++|||++ ||++||+|++|||++  +.+|+++..++.. ..|+.+.++|.|+|+..++++++..|  .
T Consensus         4 ~~~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~--v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~   80 (100)
T 3i18_A            4 VTYDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNA--FKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAIDKK   80 (100)
T ss_dssp             CCCCCEEEEEECTTSGGGG-TCCTTCEEEEETTBC--CSSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEECSTT
T ss_pred             EeCCCEEEEEeCCCCchHH-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecCCCC
Confidence            3457899999999999995 999999999999999  9999999999987 46899999999999999999888754  4


Q ss_pred             CceeeeEEEE
Q 029301          184 GRGLLGCHFR  193 (195)
Q Consensus       184 ~~~~lGi~l~  193 (195)
                      +++.||+.+.
T Consensus        81 ~~~~iGi~~~   90 (100)
T 3i18_A           81 GTPGIGITLV   90 (100)
T ss_dssp             CCEECSEEEG
T ss_pred             CCcEEeEEEe
Confidence            6788998764

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=99.55  E-value=1.2e-15  Score=106.52  Aligned_cols=79  Identities=16%  Similarity=0.218  Sum_probs=69.6

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEecc---CCCce
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRP---WQGRG  186 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~~---~~~~~  186 (195)
                      +++|..|.++|||++ ||++||+|++|||.+  +.++.++..++... +|+++.++|.|+|+..++++++..   +.+++
T Consensus         2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~gr~   78 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-KIEVGDKIISADGKN--YQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRA   78 (91)
T ss_dssp             CSSCCCCCCSSCCSS-CCCSSCEEEEETTBC--CSSHHHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCCTTCTTSC
T ss_pred             ceEEEEECCCChHHH-cCCCCCEEEEECCEE--CCCHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEeccCCCCCcc
Confidence            466788999999999 999999999999999  99999999999875 689999999999999998888863   35678


Q ss_pred             eeeEEE
Q 029301          187 LLGCHF  192 (195)
Q Consensus       187 ~lGi~l  192 (195)
                      .||+.+
T Consensus        79 ~~~~~~   84 (91)
T 2kjp_A           79 GIGVSL   84 (91)
T ss_dssp             SCCSCC
T ss_pred             eeEEee
Confidence            888754

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=99.55  E-value=2.5e-14  Score=99.09  Aligned_cols=81  Identities=25%  Similarity=0.400  Sum_probs=68.7

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecc--CCC--cee
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP--WQG--RGL  187 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~--~~~--~~~  187 (195)
                      ++|..|.++|||+++||++||+|++|||++  +.+|+++..++....++.+.++|.|+|+..++.+++..  +.+  .+.
T Consensus         6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~g~   83 (91)
T 2zpm_A            6 PVLENVQPNSAASXAGLQAGDRIVXVDGQP--LTQWVTFVMLVRDNPGXSLALEIERQGSPLSLTLIPESXPGNGXAIGF   83 (91)
T ss_dssp             CBCSEECTTSHHHHTTCCTTCEEEEETTEE--CCCHHHHHHHHHHCTTCCEEEEEEETTEEEEEEECCEEECCSSSCEEE
T ss_pred             eEEEEECCCChHHhcCCCCCCEEEEECCeE--cCCHHHHHHHHhcCCCCeEEEEEEECCeEEEEEEEEeeecCCCceEEE
Confidence            568899999999999999999999999999  99999999999887788999999999999888887753  222  246


Q ss_pred             eeEEEEe
Q 029301          188 LGCHFRM  194 (195)
Q Consensus       188 lGi~l~p  194 (195)
                      +||.+..
T Consensus        84 ~g~~~~~   90 (91)
T 2zpm_A           84 VGIEPXV   90 (91)
T ss_dssp             CCEECCC
T ss_pred             EEEEEee
Confidence            7876543

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=99.52  E-value=2.9e-14  Score=99.94  Aligned_cols=80  Identities=20%  Similarity=0.260  Sum_probs=69.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEeccC---CCc
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRPW---QGR  185 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~~~---~~~  185 (195)
                      .+++|..|.++|||++ ||++||+|++|||.+  +.++.++..++... .|+++.++|.|+|+..++++++..+   .++
T Consensus         5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~   81 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQP--INTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKPFPHHPNQ   81 (94)
T ss_dssp             CCEECCCCCTTSTTBT-TBCTTCEEEEETTBC--CCCHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCCBCSSCTTC
T ss_pred             CcEEEEEECCCChHHh-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEeeCCCCCCC
Confidence            4678899999999999 999999999999999  99999999999875 7899999999999999999888633   456


Q ss_pred             eeeeEEE
Q 029301          186 GLLGCHF  192 (195)
Q Consensus       186 ~~lGi~l  192 (195)
                      ..+|+.+
T Consensus        82 ~~~~~~~   88 (94)
T 2kl1_A           82 IGLGVTL   88 (94)
T ss_dssp             BCCSCC-
T ss_pred             cEEEEEe
Confidence            7788765

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=99.50  E-value=1.2e-13  Score=96.89  Aligned_cols=71  Identities=17%  Similarity=0.223  Sum_probs=62.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCC-CCeEEEEEEECC--EEEEEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ-GNAVPVVIMRQG--GLINLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~-g~~v~l~V~R~g--~~~~~~l~~~~~  182 (195)
                      +.++|.+|.++|||++|||++||+|++|||++  +.+|+++...+.... ++.+.++|.|+|  ...++++....|
T Consensus         2 ~~p~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~   75 (95)
T 3id1_A            2 VRPVVGEIAANSIAAEAQIAPGTELKAVDGIE--TPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHW   75 (95)
T ss_dssp             CCCBEEEECTTSHHHHTTCCTTCEEEEETTEE--CSSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTC
T ss_pred             CCCEEEeeCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEcccc
Confidence            34789999999999999999999999999999  999999999888754 478999999987  457777777766

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.44  E-value=4.9e-13  Score=92.15  Aligned_cols=67  Identities=13%  Similarity=0.078  Sum_probs=58.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  178 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~  178 (195)
                      .+..|..+.|+|||++|||++||+|++|||++  +.+|.++..++.. ..++++.++|.|+|+..++.++
T Consensus        19 ~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~--v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~   86 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ   86 (87)
T ss_dssp             EEEEEEECSCHHHHHHTTCCTTCEEEEETTEE--TTCHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEeCCCCCHHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence            35667888888899999999999999999999  9999999988876 4688999999999988777764

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.43  E-value=2.9e-13  Score=107.83  Aligned_cols=82  Identities=24%  Similarity=0.366  Sum_probs=72.5

Q ss_pred             CceEEEEEcCCChhhhcCCCC-CCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC--EEEEEEEEec-cCCCc
Q 029301          110 PFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG--GLINLAVTPR-PWQGR  185 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~-GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g--~~~~~~l~~~-~~~~~  185 (195)
                      .+++|.+|.++|||++|||++ ||+|++||| .  +.+++++..++....++++.++|.|++  ..++++++|. .|++.
T Consensus       112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing-~--v~~~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p~~~~~g~  188 (209)
T 3rle_A          112 NVWHVLEVESNSPAALAGLRPHSDYIIGADT-V--MNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGE  188 (209)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTTEEEEEESS-C--CCSSSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECCCTTSSSS
T ss_pred             cceEEEEeCCCChHHHCCCCCCCCEEEECCC-E--eCCHHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEecCCCCCc
Confidence            578999999999999999999 999999999 4  788999999998888899999999964  5678888887 68888


Q ss_pred             eeeeEEEEe
Q 029301          186 GLLGCHFRM  194 (195)
Q Consensus       186 ~~lGi~l~p  194 (195)
                      +.|||.+.+
T Consensus       189 g~lG~~~~~  197 (209)
T 3rle_A          189 GSLGCGIGY  197 (209)
T ss_dssp             SSSCEEEEC
T ss_pred             eeeeEEecC
Confidence            999998763

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=99.43  E-value=9.9e-13  Score=97.87  Aligned_cols=68  Identities=15%  Similarity=0.162  Sum_probs=63.3

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|.+|.++|||+ |||++||+|++|||++  +.++.++..++... .|+++.++|.|+|+..++++++.
T Consensus        57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~  125 (134)
T 2l97_A           57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKE--IASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLN  125 (134)
T ss_dssp             SCEEEEECSTTSGGG-TTSCSSCEEEEETTEE--CCCHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECC
T ss_pred             CCEEEEEECCCCchH-HCCCCCCEEEEECCEE--cCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEc
Confidence            568899999999999 9999999999999999  99999999998875 78999999999999999999875

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=99.40  E-value=7.5e-13  Score=95.20  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=62.3

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~  182 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.++.++..++.  .++++.++|.|+|+..++++++..+
T Consensus        35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~--~g~~v~l~v~R~g~~~~~~v~~~~~  103 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRP--LVDSSELQEAVL--TESPLLLEVRRGNDDLLFSIAPEVV  103 (112)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHH--HCSSEEEEEEETTEEEEEEECCEEE
T ss_pred             CCeEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHh--CCCeEEEEEEECCEEEEEEEEEeee
Confidence            57899999999999999999999999999999  999999998884  4678999999999999998887644

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=99.39  E-value=2.2e-12  Score=95.06  Aligned_cols=81  Identities=19%  Similarity=0.218  Sum_probs=67.3

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec-cCCCce
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR-PWQGRG  186 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~-~~~~~~  186 (195)
                      ..+++|..|.++|||+++ |++||+|++|||++  +.+|+++..++.. ..++++.++| |+|+ .++++.+. .+.+.+
T Consensus        24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~--v~~~~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l~~~~~~~~~~   98 (125)
T 2hga_A           24 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMP--TSNLTTYSAALKTISVGEVINITT-DQGT-FHLKTGRNPNNSSRA   98 (125)
T ss_dssp             CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEE--CSSHHHHHHHHTTCCTTCEEEEEE-TTEE-EEEECCBCSSSCCSC
T ss_pred             CCceEEEEECCCChHHHh-cCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEE-ECCE-EEEEEeccCCCCCce
Confidence            467899999999999999 99999999999999  9999999999985 6788999999 9888 55555433 234567


Q ss_pred             eeeEEEEe
Q 029301          187 LLGCHFRM  194 (195)
Q Consensus       187 ~lGi~l~p  194 (195)
                      .|||.+.+
T Consensus        99 ~lGi~~~~  106 (125)
T 2hga_A           99 YMGIRTSN  106 (125)
T ss_dssp             BCCEEEEC
T ss_pred             EEEEEecC
Confidence            89987654

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=99.38  E-value=3.2e-12  Score=91.95  Aligned_cols=69  Identities=28%  Similarity=0.317  Sum_probs=62.9

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecc
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP  181 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~  181 (195)
                      ..+++|..|.++|||+++||++||+|++|||++  +.++.++..++..  ++++.++|.|+|+..++++++..
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~~~~  102 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPEV  102 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHHH--CSSEEEEEEETTEEEEEEECCEE
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEee
Confidence            367899999999999999999999999999999  9999999998876  57899999999999999988763

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.37  E-value=4.3e-12  Score=91.08  Aligned_cols=69  Identities=19%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             CceEEEEEcCCChhhhcCC-CCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL-~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|..|.++|||+++|| ++||+|++|||.+  +.+  ++++..++....|+++.++|.|+++..++.+.+.
T Consensus        26 ~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~   97 (112)
T 1qau_A           26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP--LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETT   97 (112)
T ss_dssp             SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCSSSEEEEEEECCTTSEEEEEEE
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCcEEEEEEeCCcccceEeeee
Confidence            4689999999999999998 9999999999999  888  9999999988778899999999998877777765

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.36  E-value=2.8e-12  Score=88.62  Aligned_cols=67  Identities=27%  Similarity=0.321  Sum_probs=51.1

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  179 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~  179 (195)
                      .+++|.+|.++|||+++| |++||+|++|||.+  +.  ++.++..++.... ..+.++|.|+|+..++.++|
T Consensus        23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~~~~~~v~p   92 (92)
T 3cyy_A           23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTV--TENMSLTDAKTLIERSK-GKLKMVVQRDERATLLNVPD   92 (92)
T ss_dssp             EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTT-TEEEEEEEC-----------
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CcEEEEEEeCCceeeeeCCC
Confidence            467899999999999999 99999999999999  88  9999999887744 48999999999887777654

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.35  E-value=3.2e-12  Score=91.08  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=57.8

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  178 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~  178 (195)
                      +..|..+.|+|||+++||++||+|++|||++  +.+|.++..++.. ..++++.++|.|+|+..+++++
T Consensus        38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~--v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~  104 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ  104 (105)
T ss_dssp             EEEEEECSCTHHHHHHTCCTTCEEEEETTEE--TTSTTHHHHHHHHHTTCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEecCCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEe
Confidence            4557777788888999999999999999999  9999999988876 5788999999999988877764

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.33  E-value=2.7e-12  Score=88.55  Aligned_cols=61  Identities=18%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCC--CcHHHHHHHHhh-CCCCeEEEEEEECCE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD--NLLERLAAEGRK-NQGNAVPVVIMRQGG  171 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~-~~g~~v~l~V~R~g~  171 (195)
                      ..+++|..|.++|||+++||++||+|++|||.+  +  .++.++..++.. ..++++.++|.|+|+
T Consensus        27 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   90 (90)
T 2eaq_A           27 IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTK--FSYNDSKEWEEAMAKAQETGHLVMDVRRYGK   90 (90)
T ss_dssp             TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CCTTCHHHHHHHHHHHHHHTEEEEEEEEEC-
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEE--ccCCCHHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            457899999999999999999999999999999  8  899999998876 467899999999763

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.32  E-value=4.4e-12  Score=100.97  Aligned_cols=84  Identities=24%  Similarity=0.306  Sum_probs=69.3

Q ss_pred             CCceEEEEEcCCChhhhcCCCCC-CEEEEECCeeCCCCcHHHHHHHHh-hCCCCeEEEEEEECC--EEEEEEEEec-cCC
Q 029301          109 RPFAVIDEITDASPAAEDGLQLG-DQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQG--GLINLAVTPR-PWQ  183 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~G-D~I~~ing~~~~v~~~~~l~~~l~-~~~g~~v~l~V~R~g--~~~~~~l~~~-~~~  183 (195)
                      ..+++|.+|.++|||++|||++| |+|++|||++  +.+|.++...+. ...++++.++|.|++  ...++++.|. .|.
T Consensus        15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~   92 (209)
T 3rle_A           15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSR--LNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWG   92 (209)
T ss_dssp             SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEE--CCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSS
T ss_pred             CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEE--CcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEccccccc
Confidence            35789999999999999999999 9999999999  999888776544 467889999999964  5667777665 576


Q ss_pred             CceeeeEEEEe
Q 029301          184 GRGLLGCHFRM  194 (195)
Q Consensus       184 ~~~~lGi~l~p  194 (195)
                      ..+.+|+.+.+
T Consensus        93 ~~~~lGi~~~~  103 (209)
T 3rle_A           93 GQGLLGVSIRF  103 (209)
T ss_dssp             SSSSSCEEEEE
T ss_pred             ccCccceEEee
Confidence            77788987653

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.32  E-value=1.8e-12  Score=89.71  Aligned_cols=61  Identities=15%  Similarity=0.127  Sum_probs=54.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHH--HHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.++.  ++..++.. .++++.++|.|+++..
T Consensus        27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~~   89 (91)
T 2pkt_A           27 QPLAISRVTPGSKAALANLCIGDVITAIDGEN--TSNMTHLEAQNRIKG-CTDNLTLTVARSEHES   89 (91)
T ss_dssp             EEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEEEECCCC
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCccc
Confidence            35789999999999999999999999999999  77766  88888877 7889999999987643

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.31  E-value=7.9e-12  Score=93.58  Aligned_cols=68  Identities=16%  Similarity=0.247  Sum_probs=56.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  179 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~  179 (195)
                      .+++|..|.++|||++|||++||+|++|||.+  +.  ++.++..++....|+++.++|.|+|+..++.+..
T Consensus        64 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~~  133 (139)
T 2vz5_A           64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWD--MTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSM  133 (139)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHCCTTCSEEEEEEEECC-------CC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEee
Confidence            57899999999999999999999999999999  77  6999999998877889999999999887776654

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.31  E-value=7.1e-12  Score=89.04  Aligned_cols=70  Identities=17%  Similarity=0.226  Sum_probs=52.3

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~  182 (195)
                      .+++|.+|.++|||+++| |++||+|++|||.+  +.  ++.++...+... +..+.++|.|++....+.++|..|
T Consensus        33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~~~~~~p~~w  105 (105)
T 2awx_A           33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVS--LEEVTHEEAVTALKNT-SDFVYLKVAKPTSMYISRHHHHHH  105 (105)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCBHHHHHHHHHSC-CSEEEEEEECCCC-----------
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEcCCCCCCccccccCC
Confidence            468999999999999999 99999999999999  64  477777777654 789999999999999999988777

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.31  E-value=8.6e-12  Score=85.49  Aligned_cols=59  Identities=10%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.+  ++++..++.... +++.++|.|+++
T Consensus        26 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~   86 (87)
T 2pa1_A           26 TPIMVTKVAERGKAKDADLRPGDIIVAINGES--AEGMLHAEAQSKIRQSP-SPLRLQLDRITS   86 (87)
T ss_dssp             EEEEEEEECSSSHHHHTTCCTTCEEEEETTEE--STTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence            46889999999999999999999999999999  877  899999998766 789999999874

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.30  E-value=4.2e-12  Score=87.85  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=51.4

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      ++++|..|.++|||+++||++||+|++|||++  +.  +++++..++... ++++.++|.|++..
T Consensus        27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~   88 (91)
T 2vsp_A           27 PGSFIKEVQKGGPADLAGLEDEDVIIEVNGVN--VLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQ   88 (91)
T ss_dssp             SCCBC-CCCTTSHHHHTTCCTTCEEEEETTEE--CTTSCHHHHHHHHTTS-CSEEEEEEEC----
T ss_pred             CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEeCCcc
Confidence            56789999999999999999999999999999  87  899999999876 88999999998764

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.29  E-value=2.9e-12  Score=89.46  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=53.9

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      +++|..|.++|||+++||++||+|++|||.+  +.+  +.++...+... ++++.++|.|++..
T Consensus        31 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~   91 (96)
T 2v90_A           31 GQFLWEVDPGLPAKKAGMQAGDRLVAVAGES--VEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD   91 (96)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred             CeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence            6889999999999999999999999999999  777  89999998875 88999999998754

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.27  E-value=2.1e-11  Score=104.11  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=65.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~  182 (195)
                      .+++|.+|.++|||++|||++||+|++|||++  +.++.++...+.. .+|+++.|+|.|+|+.+++++++..+
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~  334 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS  334 (345)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEECEETTEE--CSCHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEEC
T ss_pred             ceEEEEEeccCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccc
Confidence            57899999999999999999999999999999  9999999999987 57999999999999999999988643

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.25  E-value=1.2e-11  Score=86.45  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=54.8

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  ++++..++.. .++++.++|.|++..
T Consensus        32 ~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~   94 (97)
T 2jil_A           32 RPVVITSVRPGGPADREGTIKPGDRLLSVDGIR--LLGTTHAEAMSILKQ-CGQEAALLIEYDVSE   94 (97)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-SCSEEEEEEEEECCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence            467899999999999999 99999999999999  887  9999999988 788999999997754

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=5.5e-12  Score=92.41  Aligned_cols=68  Identities=22%  Similarity=0.222  Sum_probs=60.5

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  179 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~  179 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.++.++..+|....++.+.|+|.|++..++....+
T Consensus        48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~  116 (124)
T 1wh1_A           48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIE--VQNREEAVALLTSEENKNFSLLIARPELQLDEGWMD  116 (124)
T ss_dssp             CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCB--CCSHHHHHHHHTCSSCCSCCEEEEECSSCCCCCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCEEEEEEEECCEEeecccCC
Confidence            578999999999999999 99999999999999  999999999998877889999999998765554443

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.24  E-value=2.4e-11  Score=83.31  Aligned_cols=58  Identities=16%  Similarity=0.257  Sum_probs=51.3

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      +++|..|.++|||+++||++||+|++|||++  +.++  .++...+... ++++.++|.|++.
T Consensus        28 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~   87 (88)
T 2uzc_A           28 PLTISSLKDGGKAAQANVRIGDVVLSIDGIN--AQGMTHLEAQNKIKGC-TGSLNMTLQRESD   87 (88)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred             CeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence            4789999999999999999999999999999  7776  8888777655 7899999999764

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.23  E-value=3.2e-11  Score=83.10  Aligned_cols=59  Identities=19%  Similarity=0.294  Sum_probs=53.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.++  +++..++... +.++.++|.|.+.
T Consensus        28 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~   88 (90)
T 2he4_A           28 PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQN--VEGLRHAEVVASIKAR-EDEARLLVVGPST   88 (90)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence            57899999999999999999999999999999  7776  8999988876 7899999998754

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.23  E-value=3.5e-11  Score=101.38  Aligned_cols=69  Identities=25%  Similarity=0.390  Sum_probs=64.7

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|.+|.++|||++|||++||+|++|||++  +.++.++..++.. ..|+++.|+|.|+|+..++++++.
T Consensus       244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~  313 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ  313 (318)
T ss_dssp             CCEEEEEECTTSTTTTTCCCTTCCEEEETTEE--CCCHHHHHHHHHTSCTTCEEEEEEESSSCEEEEEEECE
T ss_pred             CcEEEEEeCCCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence            57899999999999999999999999999999  9999999999987 678999999999999999988875

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.22  E-value=3.3e-11  Score=84.27  Aligned_cols=59  Identities=19%  Similarity=0.179  Sum_probs=51.5

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.++  .++..++.. .++++.++|.|+|+
T Consensus        37 ~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~   98 (98)
T 1ihj_A           37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKD--VRNSTEQAVIDLIKE-ADFKIELEIQTFDK   98 (98)
T ss_dssp             EEEEEEEECTTSHHHHHCSCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-SCSEEEEEEEEC--
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Confidence            368899999999999999 99999999999999  7764  888888877 78899999999864

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.22  E-value=1.2e-11  Score=86.60  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=53.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.+  +.++..++....++.+.++|.|+|+
T Consensus        33 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~   94 (98)
T 2jxo_A           33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAGGDETKLLVVDRETD   94 (98)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence            47899999999999999999999999999999  887  9999999988777777888888654

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.20  E-value=6.2e-11  Score=79.61  Aligned_cols=58  Identities=29%  Similarity=0.402  Sum_probs=50.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|.+|.++|||+++| |++||+|++|||.+  +.  ++.++...+....+ .+.++|.|+|
T Consensus        21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~R~g   81 (81)
T 2rcz_A           21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTV--TENMSLTDAKTLIERSKG-KLKMVVQRDE   81 (81)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSTT-EEEEEEEC--
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHCCCC-eEEEEEEeCC
Confidence            467899999999999999 99999999999999  88  99999998887544 8899998864

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.20  E-value=4.1e-11  Score=84.00  Aligned_cols=58  Identities=21%  Similarity=0.234  Sum_probs=52.3

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      +++|..|.++|||+++||++||+|++|||.+  +.  ++.++...+. ..|+.+.++|.|+++
T Consensus        35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~   94 (99)
T 3khf_A           35 HHVVWSVEDGSPAQEAGLRAGDLITHINGES--VLGLVHMDVVELLL-KSGNKISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence            5689999999999999999999999999999  77  8999998887 467899999999764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.20  E-value=7.1e-11  Score=99.64  Aligned_cols=72  Identities=26%  Similarity=0.216  Sum_probs=65.3

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEE-CCEEEEEEEEeccC
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR-QGGLINLAVTPRPW  182 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R-~g~~~~~~l~~~~~  182 (195)
                      ..+++|..|.++|||++|||++||+|++|||++  +.+|.++..++.. ..|+++.|+|.| +|+.+++++++..+
T Consensus       241 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v~~~~~  314 (324)
T 1y8t_A          241 TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRP--INSADALVAAVRSKAPGATVALTFQDPSGGSRTVQVTLGKA  314 (324)
T ss_dssp             SSSEEEEEECTTSTTTTTTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEECSSCCEEEEEEECEEC
T ss_pred             CCceEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCCCEEEEEEEEccC
Confidence            356889999999999999999999999999999  9999999999876 578999999999 99999998887643

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.20  E-value=5.3e-11  Score=81.86  Aligned_cols=59  Identities=20%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.  ++.++...+... ++.+.++|.|++.
T Consensus        27 ~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~   87 (89)
T 2q3g_A           27 VPLSISRLTPGGKAAQAGVAVGDWVLSIDGEN--AGSLTHIEAQNKIRAC-GERLSLGLSRAIT   87 (89)
T ss_dssp             EEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--GGGCCHHHHHHHHHTC-TTEEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEeCCC
Confidence            34789999999999999999999999999999  76  568888777654 7789999998764

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.19  E-value=6.7e-12  Score=88.87  Aligned_cols=66  Identities=12%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      ++|..|.++|||++|||++||+|++|||++  +.++  .++...+... ++.+.++|.|+++..+++++|.
T Consensus        31 v~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~~~~~~v~p~   98 (103)
T 1wf7_A           31 LTISSLKDGGKASQAHVRIGDVVLSIDGIS--AQGMTHLEAQNKIKAC-TGSLNMTLQRASAAAKSEPVSS   98 (103)
T ss_dssp             EEECCCCTTCHHHHTTCCTTCBEEEETTEE--CSSCCHHHHHHHHHHC-SSEEEEEECCCSCCCCCCCCCC
T ss_pred             EEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcCCCCCCCC
Confidence            688999999999999999999999999999  7664  7777777654 7789999999998887777764

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.18  E-value=1e-10  Score=82.60  Aligned_cols=59  Identities=19%  Similarity=0.332  Sum_probs=52.5

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      ..+++|..|.++|||+++||++||+|++|||.+  +.  +|+++...+....++++.++|.|+
T Consensus        44 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWD--MTMVTHDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence            356899999999999999999999999999999  64  488999999877788999999874

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.18  E-value=1e-11  Score=88.80  Aligned_cols=71  Identities=24%  Similarity=0.272  Sum_probs=60.1

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW  182 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~  182 (195)
                      .++++|..|.++|||+++| |++||+|++|||++  +.  ++.++...+.. .++.+.|+|.|++...++.++|..|
T Consensus        35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~~~~~v~~~~~  108 (110)
T 1um1_A           35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS--LLGLGYLRAVDLIRH-GGKKMRFLVAKSDVETAKKIHSGPS  108 (110)
T ss_dssp             CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCB--CSSCCHHHHHHHHHT-CCSEEEEEEECCCHHHHHHHSSCSS
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcceeEEEEecCC
Confidence            4678999999999999999 99999999999999  64  57788777766 4789999999998877777776543

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.18  E-value=6.4e-11  Score=81.59  Aligned_cols=58  Identities=16%  Similarity=0.268  Sum_probs=52.8

Q ss_pred             ceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .++|..|.++|||++ +||++||+|++|||++  +.  +|+++..+++...+ ++.++|.|.+.
T Consensus        26 ~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~   86 (88)
T 1kwa_A           26 HCIVARIMHGGMIHRQGTLHVGDEIREINGIS--VANQTVEQLQKMLREMRG-SITFKIVPSYR   86 (88)
T ss_dssp             GEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--GGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence            578999999999999 8999999999999999  87  89999999998776 89999988764

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.18  E-value=2.2e-11  Score=84.79  Aligned_cols=60  Identities=13%  Similarity=0.250  Sum_probs=52.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.++  .++..++.... +++.++|.|+++.
T Consensus        30 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~~   91 (94)
T 1vb7_A           30 TPIIVTKVTERGKAEAADLRPGDIIVAINGQS--AENMLHAEAQSKIRQSA-SPLRLQLDRSSGP   91 (94)
T ss_dssp             EEEECCCBCTTSSHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred             CCeEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCC-CcEEEEEEECCcC
Confidence            35788999999999999999999999999999  7775  99999888765 7899999998754

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.17  E-value=5.3e-11  Score=83.00  Aligned_cols=62  Identities=24%  Similarity=0.355  Sum_probs=51.1

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHh-hCCCCeEEEEEEECCEE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~-~~~g~~v~l~V~R~g~~  172 (195)
                      ..+++|..|.++|||+++||++||+|++|||.+  +.++.++..... ...+.++.++|.|+|+.
T Consensus        33 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~   95 (97)
T 2w4f_A           33 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVA--LQGAEHHEAVEALRGAGTAVQMRVWRERET   95 (97)
T ss_dssp             BCSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence            357899999999999999999999999999999  877665543322 24788999999998753

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.17  E-value=5.8e-11  Score=84.02  Aligned_cols=59  Identities=12%  Similarity=0.137  Sum_probs=51.2

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh--CCCCeEEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK--NQGNAVPVVIM  167 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~--~~g~~v~l~V~  167 (195)
                      ...++|.+|.++|||++|||++||+|++|||.+..+.+|+++..++..  ..++++.+.|.
T Consensus        38 ~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~   98 (101)
T 3qik_A           38 NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA   98 (101)
T ss_dssp             TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence            356789999999999999999999999999999223599999999987  47889988875

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.17  E-value=1.1e-11  Score=90.31  Aligned_cols=63  Identities=16%  Similarity=0.279  Sum_probs=57.1

Q ss_pred             CceEEEEEcC--CChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEEEEE
Q 029301          110 PFAVIDEITD--ASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINL  175 (195)
Q Consensus       110 ~~~~V~~V~~--~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~  175 (195)
                      .+++|..|.+  +|||++|||++||+|++|||++  +.+|  +++..++... ++.+.++|.|+++..++
T Consensus        44 ~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~--v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~~~~~  110 (118)
T 2yub_A           44 TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTP--VRTLRVEEVEDAIKQT-SQTLQLLIEHDPVPQRL  110 (118)
T ss_dssp             CEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSB--TTTSCHHHHHHHHHCC-SSCEEEEEEECSSCCCC
T ss_pred             CcEEEEEecCCCCChHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHHhC-CCEEEEEEEECCEEEee
Confidence            5788999999  9999999999999999999999  8888  9999999877 88999999999876543

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.17  E-value=1e-10  Score=89.52  Aligned_cols=79  Identities=20%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHH-HHH-HHhhCCCCeEEEEEEECCEEEEEEEEeccCCCce
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLER-LAA-EGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRG  186 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~-l~~-~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~~~~  186 (195)
                      ..+++|..|.++|||++|||++||+|++|||++  +.+|.+ +.. ++....++++.++|+|+++..++++++..   ..
T Consensus        26 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~~~~~v~l~vr~~~~~~~v~l~~~~---~~  100 (166)
T 1w9e_A           26 DNGIFVQLVQANSPASLVGLRFGDQVLQINGEN--CAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDS---TG  100 (166)
T ss_dssp             TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCSSEEEEEEECCTTCEEEEEECCT---TS
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEcCCCcEEEEEecCC---CC
Confidence            367899999999999999999999999999999  888877 554 44456778999999554477888887532   24


Q ss_pred             eeeEEE
Q 029301          187 LLGCHF  192 (195)
Q Consensus       187 ~lGi~l  192 (195)
                      .+|+.+
T Consensus       101 ~lG~~~  106 (166)
T 1w9e_A          101 HVGFIF  106 (166)
T ss_dssp             CCSEEE
T ss_pred             cEeEEE
Confidence            467654

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.17  E-value=5.3e-11  Score=101.53  Aligned_cols=71  Identities=21%  Similarity=0.230  Sum_probs=65.5

Q ss_pred             CceEEEEEcCCChhhhcCCCC-----------CCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQL-----------GDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAV  177 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~-----------GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l  177 (195)
                      .+++|.+|.++|||++|||++           ||+|++|||++  +.+|+++..++.. ..|++++|+|.|+|+..++++
T Consensus       251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~--v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v  328 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTK--VSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISV  328 (348)
T ss_dssp             SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBC--CSSSHHHHHHHTTCCTTCEEEEEEECSSSEEEEEE
T ss_pred             ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEE--eCCHHHHHHHHHhCCCcCEEEEEEEECCEEEEEEE
Confidence            689999999999999999999           99999999999  9999999999976 578999999999999999888


Q ss_pred             EeccC
Q 029301          178 TPRPW  182 (195)
Q Consensus       178 ~~~~~  182 (195)
                      ++..|
T Consensus       329 ~l~~~  333 (348)
T 3qo6_A          329 TLEPK  333 (348)
T ss_dssp             ECEEC
T ss_pred             EEccC
Confidence            87644

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.17  E-value=1.3e-10  Score=79.06  Aligned_cols=57  Identities=21%  Similarity=0.255  Sum_probs=50.2

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R  168 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.  ++.++..++... .++++.++|.|
T Consensus        25 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC--VLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             BCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            458999999999999999 99999999999999  76  578999888875 47889998875

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.17  E-value=7.2e-11  Score=86.59  Aligned_cols=60  Identities=23%  Similarity=0.350  Sum_probs=54.2

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhh-CCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRK-NQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~-~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++  +++..++.. ..++++.|+|.|+++
T Consensus        51 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  113 (124)
T 3tsv_A           51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKKD  113 (124)
T ss_dssp             SCEEEEEECTTCHHHHTTCCTTEEEEEETTEE--CSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence            57899999999999999999999999999999  8877  899988876 678899999999764

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.16  E-value=1.2e-10  Score=83.67  Aligned_cols=58  Identities=10%  Similarity=0.089  Sum_probs=51.4

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .++|..|.++|||++|||++||+|++|||++  +.  +++++..++....++++.++|.|..
T Consensus        45 ~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~--v~~~~~~dv~~~i~~~~~~~v~l~V~~~~  104 (109)
T 2vsv_A           45 PVQVHFLDPYCSASVAGAREGDYIVSIQLVD--CKWLTLSEVMKLLKSFGEDEIEMKVVSLL  104 (109)
T ss_dssp             SCEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence            4679999999999999999999999999999  88  6799999988766667999988754

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=1e-10  Score=83.59  Aligned_cols=61  Identities=25%  Similarity=0.369  Sum_probs=50.9

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      ..+++|..|.++|||+++||++||+|++|||.+  +.+  +.++...+.. .++++.|+|.|+++.
T Consensus        45 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~  107 (110)
T 1x5q_A           45 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVA--LQGAEHHEAVEALRG-AGTAVQMRVWRESGP  107 (110)
T ss_dssp             CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHS-CCSEEEEEEEECSSC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHhhC-CCCeEEEEEEECCcc
Confidence            356889999999999999999999999999999  776  4444444444 788999999998864

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.16  E-value=1.8e-11  Score=89.84  Aligned_cols=69  Identities=19%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             CceEEEEEcCCChhhhcCC-CCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL-~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|..|.++|||+++|| ++||+|++|||.+  +.+  ++++..++....|+.+.++|.|+++..++++.+.
T Consensus        33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~  104 (127)
T 1b8q_A           33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP--LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETT  104 (127)
T ss_dssp             SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEE--CSSSCHHHHHHHHHSCCSSCEEEEEECCCCSEEECCCCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEeCCceEEEEEEEE
Confidence            4688999999999999999 9999999999999  888  9999999988778899999999998888877664

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.16  E-value=2.6e-11  Score=85.86  Aligned_cols=60  Identities=22%  Similarity=0.143  Sum_probs=54.7

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      .++|..|.++|||+++||++||+|++|||++  +.+  +.++..++... ++++.|+|.|+++..
T Consensus        30 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~~   91 (103)
T 1v5l_A           30 PLVITRITPGSKAAAANLCPGDVILAIDGFG--TESMTHADAQDRIKAA-SYQLCLKIDRAETRL   91 (103)
T ss_dssp             EEECSCBCTTSTTGGGTCCTTCBEEEETTEE--CSSCCHHHHHHHHTTC-CSEEECEECCCTTTT
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEECCeEc
Confidence            5788899999999999999999999999999  888  99999999876 889999999988644

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.16  E-value=2.5e-10  Score=100.25  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=65.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~  182 (195)
                      .+++|.+|.++|||++|||++||+|++|||++  +.+|.++...+.. ..|+++.++|.|+|+..++++++..|
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~  334 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS  334 (436)
T ss_pred             cceEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCC
Confidence            57899999999999999999999999999999  9999999998876 56899999999999999998887644

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.3e-10  Score=81.78  Aligned_cols=58  Identities=14%  Similarity=0.235  Sum_probs=50.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.+  +.++...+..  ++++.|+|.|+++
T Consensus        36 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~--~~~v~l~v~R~g~   95 (100)
T 2eeh_A           36 LGIFVSKVEEGSSAERAGLCVGDKITEVNGLS--LESTTMGSAVKVLTS--SSRLHMMVRRMGS   95 (100)
T ss_dssp             CCEEEEEECTTSHHHHHTCCSSCEEEEETTEE--CSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence            46899999999999999999999999999999  665  6777777765  6889999999875

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.16  E-value=2e-12  Score=94.94  Aligned_cols=69  Identities=20%  Similarity=0.230  Sum_probs=60.5

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEEE--EEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLIN--LAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~--~~l~~~  180 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.+  +.++..++....+..+.++|.|+|+..+  +++++.
T Consensus        33 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~~~~~~~~l~~~  105 (128)
T 2kjd_A           33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPS  105 (128)
T ss_dssp             CSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTCSEEEEEEECHHHHHHHHHHTCCCC
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCEEEEEEEeCCcceEEEEEEEec
Confidence            47899999999999999999999999999999  888  9999999988777788899999887655  555554

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.15  E-value=1.4e-10  Score=98.07  Aligned_cols=67  Identities=28%  Similarity=0.328  Sum_probs=62.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|.+|.++|||++|||++||+|++|||++  +.+++++..++..  ++++.|+|.|+|+.++++++|.
T Consensus       256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~--v~~~~~l~~~l~~--~~~v~l~v~R~g~~~~~~v~~~  322 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPE  322 (325)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHTT--CSSEEEEEEETTEEEEEEECCE
T ss_pred             CCeEEEEeCcCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEe
Confidence            47899999999999999999999999999999  9999999999875  5789999999999999998774

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.15  E-value=7.4e-11  Score=80.27  Aligned_cols=57  Identities=19%  Similarity=0.237  Sum_probs=48.8

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECC
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      +++|..|.++|||+++||++||+|++|||.+  +.++  .++...+... +.++.++|.|++
T Consensus        26 ~v~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~   84 (85)
T 1rgw_A           26 PLTISRITPGSKAAQSQLSQGDLVVAIDGVN--TDTMTHLEAQNKIKSA-SYNLSLTLQKSK   84 (85)
T ss_dssp             CCBEEEECTTSHHHHSSCCCCSBEEEETTEE--CTTCCHHHHHHHHTTC-SSCEEEEEESCC
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            5789999999999999999999999999999  7665  7777777553 457999999876

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=2e-11  Score=89.69  Aligned_cols=69  Identities=19%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec--cC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR--PW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~--~~  182 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.++  .++...+..  ++++.++|.|+|+..++.+++.  .|
T Consensus        46 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~~~~~v~~~~~~w  118 (128)
T 1uf1_A           46 LGIYITGVDPGSEAEGSGLKVGDQILEVNGRS--FLNILHDEAVRLLKS--SRHLILTVKDVGRLPHARTTVDETKW  118 (128)
T ss_dssp             CCCEEEEECTTCHHHHHTCCTTCEEEEETTEE--CSSCCHHHHHHHHTT--CSEEEEEEECCSCCSSCSCCCCSSCS
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc--CCeEEEEEEECCccccccccccccce
Confidence            36899999999999999999999999999999  7764  455555543  5699999999998887777665  56

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.15  E-value=1.9e-10  Score=83.92  Aligned_cols=60  Identities=22%  Similarity=0.308  Sum_probs=53.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhC-CCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN-QGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~-~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  ++++..++... .++++.|+|.|+++
T Consensus        58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~  121 (121)
T 2kom_A           58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD--LVGKSQEEVVSLLRSTKMEGTVSLLVFRQED  121 (121)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEE--CTTSCHHHHHHHHHHCCSSCEEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhcCCCCCEEEEEEEeCCC
Confidence            468999999999999999 99999999999999  766  68999888874 58899999999763

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=2.1e-10  Score=79.26  Aligned_cols=59  Identities=22%  Similarity=0.207  Sum_probs=50.0

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      +++|..|.++|||+++||++||+|++|||.+  +.  ++.++...+.. .+..+.++|.|++..
T Consensus        25 ~~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~   85 (91)
T 2f5y_A           25 PVRVQAVDSGGPAERAGLQQLDTVLQLNERP--VEHWKCVELAHEIRS-CPSEIILLVWRMVPQ   85 (91)
T ss_dssp             SCEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEEECC--
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCC
Confidence            4789999999999999999999999999999  77  46888888766 455899999998754

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.15  E-value=7.1e-11  Score=84.06  Aligned_cols=60  Identities=23%  Similarity=0.316  Sum_probs=53.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++..++.. .+.++.|+|.|++..
T Consensus        44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~  106 (108)
T 2jre_A           44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVN--VQGMAQSDVVEVLRN-AGNPVRLLLIRRLPL  106 (108)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEE--CTTSCHHHHHHHHHH-HCSEEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence            478999999999999999 99999999999999  776  7888888876 678999999998753

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.15  E-value=1.5e-10  Score=80.81  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=52.3

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+... ++++.++|.|++...
T Consensus        30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~   93 (98)
T 2opg_A           30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGID--LRKATHDEAINVLRQT-PQRVRLTLYRDEAPY   93 (98)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEECSSCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcCCCCC
Confidence            478999999999999999 99999999999999  765  67888777654 478999999987643

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=1.5e-10  Score=81.62  Aligned_cols=59  Identities=20%  Similarity=0.267  Sum_probs=51.5

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++..++....+ ++.++|.|.+.
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~  100 (103)
T 2fcf_A           39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMD--LRDASHEQAVEAIRKAGN-PVVFMVQSIIS  100 (103)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCCS-SEEEEEECCCC
T ss_pred             CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCC-cEEEEEEECCC
Confidence            468999999999999999 99999999999999  877  9999999987644 89999988653

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.14  E-value=2.2e-10  Score=79.73  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=52.2

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.  ++.++...+.. .++++.++|.|++.
T Consensus        33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~   94 (96)
T 1d5g_A           33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS--LEGATHKQAVETLRN-TGQVVHLLLEKGQS   94 (96)
T ss_dssp             SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence            578999999999999999 99999999999999  76  67888888876 67899999998764

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.14  E-value=1.9e-10  Score=80.31  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=52.8

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++. ..++.+.++|.|+++.
T Consensus        30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~~   92 (97)
T 1n7e_A           30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSS--LKGKPLSEAIHLLQ-MAGETVTLKIKKQTDA   92 (97)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TCCSEEEEEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEeCCCC
Confidence            468899999999999999 99999999999999  75  5789988887 5778999999998753

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.14  E-value=1.5e-10  Score=79.84  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=49.6

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.+  +.++...+....+..+.+.+.|+++
T Consensus        27 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~   88 (91)
T 1g9o_A           27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGEN--VEKETHQQVVSRIRAALNAVRLLVVDPETD   88 (91)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCSSEEEEEEECCCCS
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCcEEEEEEcCCcc
Confidence            57899999999999999999999999999999  766  7888888887666555555555543

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=2.3e-10  Score=83.05  Aligned_cols=60  Identities=20%  Similarity=0.296  Sum_probs=53.0

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+....+ ++.|+|.|+++.
T Consensus        53 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~-~v~l~v~R~g~~  115 (117)
T 2fne_A           53 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS--LEGVTHEEAVAILKRTKG-TVTLMVLSSDET  115 (117)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCS-SEEEEEEECSCE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEeCCcc
Confidence            357899999999999999 99999999999999  77  89999998887544 699999998764

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.13  E-value=2.4e-10  Score=81.69  Aligned_cols=61  Identities=21%  Similarity=0.314  Sum_probs=53.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  +++++...+... .+..+.++|.|+++.
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD--LAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEE--CTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred             cCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence            468999999999999999 99999999999999  74  468999988874 588999999998753

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.13  E-value=1.5e-10  Score=82.79  Aligned_cols=61  Identities=18%  Similarity=0.255  Sum_probs=53.6

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhC--CCCeEEEEEEECCE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN--QGNAVPVVIMRQGG  171 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~--~g~~v~l~V~R~g~  171 (195)
                      ..+++|..|.++|||+++| |++||+|++|||++  +.+  ++++..+++..  .+..+.|+|.|.+.
T Consensus        32 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN--FENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             CCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--TTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence            3568899999999999999 99999999999999  776  99999999875  45579999998764

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.13  E-value=2.6e-10  Score=79.57  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=50.6

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.+  ++++..++... +.++.++|.+.
T Consensus        37 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~~~   95 (96)
T 2ego_A           37 MVTFVARVHESSPAQLAGLTPGDTIASVNGLN--VEGIRHREIVDIIKAS-GNVLRLETLYG   95 (96)
T ss_dssp             EEEEEEEECTTCHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEECC
T ss_pred             CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence            46789999999999999999999999999999  777  79999999876 45899988764

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.13  E-value=1.1e-10  Score=85.09  Aligned_cols=60  Identities=25%  Similarity=0.266  Sum_probs=54.3

Q ss_pred             ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCC-CCeEEEEEEECCEE
Q 029301          111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ-GNAVPVVIMRQGGL  172 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~-g~~v~l~V~R~g~~  172 (195)
                      .++|..|.++|||+++| |++||+|++|||++  +.+  ++++..++.... ++++.|+|.|++..
T Consensus        46 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           46 PPLISYIEADSPAERCGVLQIGDRVMAINGIP--TEDSTFEEANQLLRDSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             CCEEEEECTTSHHHHSCCCCTTCCEEEETTEE--SSSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred             CcEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence            47899999999999999 99999999999999  876  999999998754 88999999998763

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.12  E-value=2.5e-11  Score=87.73  Aligned_cols=60  Identities=25%  Similarity=0.226  Sum_probs=54.3

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC---cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN---LLERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~---~~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.   ++.++...+.. .++.+.++|.|++..
T Consensus        49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~--v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~  112 (117)
T 2o2t_A           49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQA--LDQTITHQQAISILQK-AKDTVQLVIARGSLP  112 (117)
T ss_dssp             EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEE--CCTTSCHHHHHHHHHH-CCSEEEEEEESSCCG
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCCHHHHHHHHHc-CCCEEEEEEEeCCcc
Confidence            468899999999999999 99999999999999  87   89999998877 578999999998764

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.3e-10  Score=80.81  Aligned_cols=59  Identities=14%  Similarity=0.068  Sum_probs=50.2

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      ..++|..|.++|||+++||++||+|++|||++  +.+  +.++...+.. .++++.++|.|+++
T Consensus        32 ~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~   92 (94)
T 2eeg_A           32 APLTISRVHAGSKAALAALCPGDLIQAINGES--TELMTHLEAQNRIKG-CHDHLTLSVSSGPS   92 (94)
T ss_dssp             SCCEECCCCSSSHHHHTTCCTTCEEEEETTEE--TTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence            34789999999999999999999999999999  776  4677766665 67789999999764

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.12  E-value=3.4e-10  Score=99.32  Aligned_cols=71  Identities=23%  Similarity=0.249  Sum_probs=65.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccCC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ  183 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~  183 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.+|+++.++++...+ .+.++|.|+|+.+++.+.|..|.
T Consensus       363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~l~~~~~-~v~l~v~R~g~~~~~~~~~~~~~  433 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDR--VNSIAEMRKVLAAKPA-IIALQIVRGNESIYLLMRLEHHH  433 (436)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCC-eEEEEEEECCEEEEEEEEecccC
Confidence            36889999999999999999999999999999  9999999999987544 89999999999999999998664

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.12  E-value=2.4e-10  Score=80.96  Aligned_cols=57  Identities=21%  Similarity=0.166  Sum_probs=51.7

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.+  ++++..+++.  ++++.|+|.|+.
T Consensus        41 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~--~~~v~l~v~r~~   99 (104)
T 1wi2_A           41 LGIFISKVIPDSDAHRAGLQEGDQVLAVNDVD--FQDIEHSKAVEILKT--AREISMRVRFFS   99 (104)
T ss_dssp             CCCEEEEECTTSHHHHHTCCTTCEEEEETTEE--CSSCCHHHHHHHHHH--SSSEEEEEECCC
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC--CCEEEEEEEECC
Confidence            46889999999999999999999999999999  877  9999999887  678999998864

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.11  E-value=3e-10  Score=78.98  Aligned_cols=60  Identities=28%  Similarity=0.326  Sum_probs=51.2

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .++++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+.. .+.++.++|.|+++
T Consensus        28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~   90 (95)
T 2vwr_A           28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHD--LKYGTPELAAQIIQA-SGERVNLTIARPGK   90 (95)
T ss_dssp             SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEEEESC
T ss_pred             CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEcCCc
Confidence            3578999999999999999 99999999999999  654  6777776664 47899999999764

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.11  E-value=3.7e-10  Score=99.61  Aligned_cols=69  Identities=17%  Similarity=0.284  Sum_probs=64.4

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|.+|.++|||++|||++||+|++|||++  +.+|.++...+.. ..|+++.++|.|+|+..++++++.
T Consensus       282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~--v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~  351 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAGLKAGDIITQINDTK--ITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVT  351 (451)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECB
T ss_pred             ceEEEEecCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence            57899999999999999999999999999999  9999999999886 678999999999999999888765

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.11  E-value=3e-10  Score=80.00  Aligned_cols=61  Identities=28%  Similarity=0.336  Sum_probs=53.3

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      ..+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+.. .+.++.++|.|++..
T Consensus        33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~   96 (102)
T 2i1n_A           33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD--VSEVVHSRAVEALKE-AGPVVRLVVRRRQPP   96 (102)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-SCSEEEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCC
Confidence            3578999999999999999 99999999999999  755  8888888876 578999999997754

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.10  E-value=2.8e-10  Score=89.20  Aligned_cols=61  Identities=25%  Similarity=0.293  Sum_probs=55.2

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC-CCeEEEEEEECCE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG  171 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~-g~~v~l~V~R~g~  171 (195)
                      ..+++|..|.++|||++|| |++||+|++|||++  +.  +|.++..++.... +.++.++|.|+++
T Consensus        35 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   99 (196)
T 1p1d_A           35 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIP--TEDSTFEEANQLLRDSSITSKVTLEIEFDVA   99 (196)
T ss_dssp             SCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBC--STTSCHHHHHHHHHTCCSSSEEEEEEEECSC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEecCC
Confidence            4568999999999999999 99999999999999  87  7999999998754 8899999999884

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.10  E-value=6.3e-11  Score=84.07  Aligned_cols=59  Identities=29%  Similarity=0.387  Sum_probs=51.3

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.++  .++...+.. .+.++.++|.|++.
T Consensus        26 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~   86 (106)
T 3ngh_A           26 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVF--VDKEEHAQVVELVRK-SGNSVTLLVLDGDS   86 (106)
T ss_dssp             CSCEEECCCTTSHHHHTTCCTTCEEEEETTEE--CTTSCHHHHHHHHHH-TTTEEEEEEECHHH
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCEEEEEEEECCe
Confidence            46889999999999999999999999999999  6655  488888874 57799999998764

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=4.2e-10  Score=82.14  Aligned_cols=60  Identities=22%  Similarity=0.280  Sum_probs=54.0

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.  ++.++..++... .++.+.|+|.|++.
T Consensus        44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  107 (123)
T 1ueq_A           44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVC--VLGHTHADVVKLFQSVPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEE--CTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            458899999999999999 99999999999999  76  789999999875 48899999999764

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.10  E-value=2.7e-10  Score=80.30  Aligned_cols=59  Identities=24%  Similarity=0.310  Sum_probs=52.7

Q ss_pred             CCceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCC--CcHHHHHHHHhhC-CCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKN-QGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~-~g~~v~l~V~R~  169 (195)
                      .++++|..|.++|||++ +||++||+|++|||++  +  .+++++..++... .++.+.|+|.|.
T Consensus        36 ~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   98 (101)
T 2yt7_A           36 LPTAVIANLLHGGPAERSGALSIGDRLTAINGTS--LVGLPLAACQAAVRETKSQTSVTLSIVHC   98 (101)
T ss_dssp             SCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCB--CTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             ccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence            35689999999999999 6799999999999999  8  8999999999874 788999998874

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.10  E-value=4.1e-10  Score=77.93  Aligned_cols=58  Identities=24%  Similarity=0.351  Sum_probs=50.0

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+... +.++.++|.|++
T Consensus        33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~g   93 (94)
T 2fe5_A           33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN--LQDVRHEEAVASLKNT-SDMVYLKVAKPG   93 (94)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCBHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEcCC
Confidence            468999999999999999 99999999999999  765  67877777654 458999999876

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.10  E-value=1.9e-10  Score=78.89  Aligned_cols=58  Identities=21%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhh-CCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRK-NQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~-~~g~~v~l~V~R~g~  171 (195)
                      .+.+|..| ++|||+ +||++||+|++|||.+  +.++  +++...+.. ..++++.++|.|+++
T Consensus        27 ~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   87 (88)
T 3bpu_A           27 GGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKN--VQALTHNQVVDMLVESPKGSEVTLLVQRQTR   87 (88)
T ss_dssp             SSEEEEEC-CC--CC-TTCCTTCEEEEETTEE--CTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred             CcEEEEEe-cCChhH-hCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence            45677776 999999 9999999999999999  7765  899888875 578899999999764

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.10  E-value=2.3e-10  Score=79.43  Aligned_cols=59  Identities=22%  Similarity=0.316  Sum_probs=49.4

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.++  .++..++... +..+.+.+.|.+.
T Consensus        29 ~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~~~~~~~r~~~   89 (95)
T 3r68_A           29 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKS--VEALDHDGVVEMIRKG-GDQTTLLVLDKEL   89 (95)
T ss_dssp             CSEEEECCCTTSHHHHHTCCTTEEEEEETTEE--CTTCCHHHHHHHHHTT-TTEEEEEEEECC-
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEECCcc
Confidence            36889999999999999999999999999999  7776  9999998874 4566666666543

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.10  E-value=5.7e-10  Score=87.75  Aligned_cols=81  Identities=16%  Similarity=0.135  Sum_probs=60.7

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc----HHHHHHHHhhCCCCeEEEEEEECCEEE--EEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL----LERLAAEGRKNQGNAVPVVIMRQGGLI--NLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~----~~~l~~~l~~~~g~~v~l~V~R~g~~~--~~~l~~~~~  182 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.+    +.++...+....+..+.++|.|++...  .+++....+
T Consensus        45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v~l~~~  122 (206)
T 3r0h_A           45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTP--IHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKK  122 (206)
T ss_dssp             SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSCCEEEEEEEEECC
T ss_pred             CCeEEEEECCCChHHhcCCCCCCCEEEEECCEE--cCCCccCHHHHHHHHHhcCCCceEEEEEecccCCCcEEEEEEecC
Confidence            578999999999999998 99999999999999  777    778877776655555999999987543  344433322


Q ss_pred             CCceeeeEEEE
Q 029301          183 QGRGLLGCHFR  193 (195)
Q Consensus       183 ~~~~~lGi~l~  193 (195)
                      .. ..||+.+.
T Consensus       123 ~~-~~lG~~~~  132 (206)
T 3r0h_A          123 AG-KELGLSLS  132 (206)
T ss_dssp             TT-CCCCEEEE
T ss_pred             CC-CccCeEEE
Confidence            22 34676553

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.10  E-value=8.3e-11  Score=84.18  Aligned_cols=69  Identities=32%  Similarity=0.429  Sum_probs=56.0

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~  182 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.  ++.++..++.. .++.+.|+|.|++.. ....+|..|
T Consensus        38 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~-~~~~~~~~~  109 (111)
T 2dlu_A           38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTN--VQGMTSEQVAQVLRN-CGNSVRMLVARDPAG-DISVTSGPS  109 (111)
T ss_dssp             SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCC--CTTSCHHHHHHHHHH-HCSEEEEEEEESCTT-CCCCCCCTT
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCCCC-ccCCCCCCC
Confidence            468999999999999999 99999999999999  76  57888888876 467899999997654 333334344

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=2.3e-10  Score=80.81  Aligned_cols=59  Identities=22%  Similarity=0.255  Sum_probs=51.7

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+.. .+.++.|+|.|+++
T Consensus        38 ~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~   99 (104)
T 2djt_A           38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGES--TQGLTHAQAVERIRA-GGPQLHLVIRRPLS   99 (104)
T ss_dssp             CCCEEEEECTTCHHHHHCSCCTTCBEEEETTEE--CTTCCHHHHHHHHHH-TCSEEEEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence            457899999999999999 99999999999999  765  6788877776 67899999999875

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=1.6e-10  Score=81.74  Aligned_cols=60  Identities=15%  Similarity=0.160  Sum_probs=52.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC-CCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~-g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.  ++.++..++.... +..+.|+|.|++.
T Consensus        34 ~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   97 (103)
T 1uep_A           34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIP--VAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence            457899999999999999 99999999999999  74  5899999888754 7899999998754

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.09  E-value=2.6e-10  Score=78.41  Aligned_cols=58  Identities=16%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCC-CCeEEEEEEECC
Q 029301          111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQ-GNAVPVVIMRQG  170 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~-g~~v~l~V~R~g  170 (195)
                      +++|..|.++|||+++| |++||+|++|||.+  +  .++.++...+.... +.++.++|.|..
T Consensus        28 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~   89 (90)
T 2q9v_A           28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTP--VIGKSHQLVVQLMQQAAKQGHVNLTVRQTR   89 (90)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred             CEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence            37899999999999999 99999999999999  7  67999998887643 458999998853

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.09  E-value=2.2e-10  Score=80.61  Aligned_cols=57  Identities=12%  Similarity=0.297  Sum_probs=50.2

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  |+++..++... +.++.++|.+.
T Consensus        36 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~--v~~~~~~~~~~~l~~~-~~~v~L~V~~~   95 (97)
T 2ejy_A           36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTN--VTNHSVDQLQKAMKET-KGMISLKVIPN   95 (97)
T ss_dssp             CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBC--CCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            468999999999999999 99999999999999  875  99999999875 55788887754

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=4e-10  Score=81.71  Aligned_cols=59  Identities=22%  Similarity=0.262  Sum_probs=52.7

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+... +..+.|+|.|++.
T Consensus        54 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~  115 (117)
T 2byg_A           54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYS--LEEVTHEEAVAILKNT-SEVVYLKVGKPTT  115 (117)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence            468999999999999999 99999999999999  76  789998888754 7899999999764

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=3.7e-10  Score=78.24  Aligned_cols=54  Identities=11%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             EEEEEcCCChhhhcCCCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      +|.+|.++|||+++||++||+|++|||.+  +  .++.++..++... ++++.++|.+.
T Consensus        34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~p~   89 (90)
T 1y7n_A           34 IICSLMRGGIAERGGVRVGHRIIEINGQS--VVATPHEKIVHILSNA-VGEIHMKTMPA   89 (90)
T ss_dssp             EEEEECTTSHHHHHTCCSSCEEEEETTEE--CTTSCHHHHHHHHHHC-CEEEEEEEECC
T ss_pred             EEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            89999999999999999999999999999  7  5899999999854 67888888754

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.08  E-value=1e-10  Score=84.22  Aligned_cols=66  Identities=26%  Similarity=0.330  Sum_probs=56.0

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAV  177 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l  177 (195)
                      ..+++|..|.++|||+++||++||+|++|||++  +.+  +.++...+... |+++.++|.|+++..++.+
T Consensus        37 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~~~~~~~  104 (114)
T 2edz_A           37 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVF--VDKEEHAQVVELVRKS-GNSVTLLVLDGDSYEKAVK  104 (114)
T ss_dssp             CCSCEEECCCTTCTTGGGTCCTTCEEEEESSSB--CSSSCHHHHHHHHHHT-CSEEEEEEECHHHHHHHHH
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEECCcceehhh
Confidence            356899999999999999999999999999999  765  68998888764 8899999999876544433

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=3.6e-10  Score=80.11  Aligned_cols=59  Identities=19%  Similarity=0.301  Sum_probs=52.4

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++..++... +..+.|+|.|++
T Consensus        37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~   98 (105)
T 1wha_A           37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVD--VTEARHDHAVSLLTAA-SPTIALLLEREA   98 (105)
T ss_dssp             CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCB--CTTCCHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            3578999999999999999 99999999999999  766  89998888765 778999999975

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.08  E-value=5.2e-11  Score=85.51  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=58.2

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      ..+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++... ++.+.++|.|++...+++++|.
T Consensus        34 ~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~~~~~~v~p~  105 (113)
T 2g5m_B           34 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS--LVGVTQSFAASVLRNT-KGRVRFMIGRERPGEQSEVAQL  105 (113)
T ss_dssp             CEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEE--CSSCCHHHHHHHHHHS-CSSCEEEEEECCCCTTSSCSSC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcC-CCeEEEEEEeCCCCCcchhhhh
Confidence            3568899999999999999 99999999999999  65  477777777764 7889999999987766666553

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.08  E-value=2.9e-10  Score=81.44  Aligned_cols=60  Identities=20%  Similarity=0.311  Sum_probs=53.7

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCC---CCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ---GNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~---g~~v~l~V~R~g~  171 (195)
                      +.++|..|.++|||+++| |++||+|++|||++  +.+  ++++..+|+...   +.++.|.+.|++.
T Consensus        41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~--~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKES--MIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSC--CTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence            458899999999999999 99999999999999  655  999999998876   8899999998764

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.08  E-value=1e-09  Score=78.10  Aligned_cols=59  Identities=22%  Similarity=0.329  Sum_probs=51.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|.+|.++|||+++| |++||+|++|||.+  +  .++.++...+.. .+.++.++|.|++.
T Consensus        32 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~   93 (106)
T 4amh_A           32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVA--LEEVTHEEAVTALKN-TSDFVYLKVAKPGS   93 (106)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHS-CCSEEEEEEECCSS
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC-CCCeEEEEEEeCCC
Confidence            468999999999999999 99999999999999  6  458888888865 45699999999764

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.08  E-value=4.5e-10  Score=80.11  Aligned_cols=57  Identities=16%  Similarity=0.297  Sum_probs=50.3

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      ++++|..|.++|||+++||++||+|++|||++  +.++  .++...+... +..+.++|.|.
T Consensus        45 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~~~  103 (109)
T 1q3o_A           45 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQG-GNTLMVKVVMV  103 (109)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEEC
Confidence            36899999999999999999999999999999  8777  8998888764 67888888763

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.07  E-value=7.2e-10  Score=86.03  Aligned_cols=79  Identities=23%  Similarity=0.285  Sum_probs=57.2

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHH--HHHhhCCCCeEEEEEEECC--EEEEEEEEeccCC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLA--AEGRKNQGNAVPVVIMRQG--GLINLAVTPRPWQ  183 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~--~~l~~~~g~~v~l~V~R~g--~~~~~~l~~~~~~  183 (195)
                      .++++|..|.|+|||+++| |++||+|++|||++  +.+|.+..  ..+. ..+..+.++|.|++  ....+++....+.
T Consensus        34 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~r~~~~~~~~~~v~l~~~~  110 (196)
T 3gsl_A           34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD--VREVTHSAAVEALK-EAGSIVRLYVMRRKPPAEKVMEIKLIKGP  110 (196)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TSCSEEEEEEEEECCCCEEEEEEEEEEBT
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-hCCCcEEEEEEecCCCccccEEEEEecCC
Confidence            4578999999999999999 99999999999999  87764443  3333 45789999999976  3344444433332


Q ss_pred             CceeeeEEE
Q 029301          184 GRGLLGCHF  192 (195)
Q Consensus       184 ~~~~lGi~l  192 (195)
                      .  .+|+.+
T Consensus       111 ~--~lG~~~  117 (196)
T 3gsl_A          111 K--GLGFSI  117 (196)
T ss_dssp             T--BSCEEE
T ss_pred             C--CceEEE
Confidence            2  455554

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.07  E-value=4.9e-10  Score=81.99  Aligned_cols=58  Identities=22%  Similarity=0.288  Sum_probs=51.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.+  ++++...+.... .++.++|.|..
T Consensus        59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~~  119 (123)
T 2iwq_A           59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMD--LRDASHEQAVEAIRKAG-NPVVFMVQSII  119 (123)
T ss_dssp             CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-SSEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            468999999999999999 99999999999999  877  999999998764 48999998854

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.07  E-value=3.1e-10  Score=78.79  Aligned_cols=58  Identities=12%  Similarity=0.237  Sum_probs=47.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.++  .++...++  .++++.|+|.|++.
T Consensus        29 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~--~g~~v~l~v~R~~~   88 (93)
T 2dls_A           29 RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTM--VTNSSHLEVVKLIK--SGAYVALTLLGSSS   88 (93)
T ss_dssp             SSCEEEEECSSSTTTTTTCCSSCEEEEETTEE--CSSSCHHHHHHHHT--SSSEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhhc--CCCEEEEEEEECCC
Confidence            46889999999999999999999999999999  6664  34444443  58899999999753

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=2.9e-10  Score=81.86  Aligned_cols=59  Identities=25%  Similarity=0.271  Sum_probs=53.2

Q ss_pred             ceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          111 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      .++|..|.++|||++ +||++||+|++|||.+  +.+  ++++..++.. .+..+.|+|.|+++.
T Consensus        44 ~~~V~~V~~~spA~~~agL~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~  105 (114)
T 1uew_A           44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQS--IINMPHADIVKLIKD-AGLSVTLRIIPQEEL  105 (114)
T ss_dssp             SCEEEEECTTCTTGGGSSCCTTCBEEEETTBC--TTTSCHHHHHHHHHH-TTTEEEEEECCCSCC
T ss_pred             CeEEEEECCCChHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence            368999999999999 9999999999999999  777  7999999987 788999999998753

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.07  E-value=1.4e-10  Score=78.66  Aligned_cols=56  Identities=25%  Similarity=0.275  Sum_probs=48.8

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEEC
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      +++|..|.++|||+++||++||+|++|||.+  +.++  .++...+... +..+.++|.|+
T Consensus        24 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~   81 (83)
T 2kv8_A           24 PCVLSCVMRGSPADFVGLRAGDQILAVNEIN--VKKASHEDVVKLIGKC-SGVLHMVIAEG   81 (83)
T ss_dssp             SCBCCBCCTTSTTTTTTCCTTCEEEEETTEE--CSSCCHHHHHHHHTTC-SSCEEEEEECC
T ss_pred             CeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence            4788999999999999999999999999999  7777  8888887654 46799999885

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.07  E-value=6.2e-10  Score=79.92  Aligned_cols=60  Identities=17%  Similarity=0.260  Sum_probs=51.5

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+.. .+.++.|+|.|++..
T Consensus        49 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~  111 (112)
T 2r4h_A           49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGET--TKNMKHSRAIELIKN-GGRRVRLFLKRGETS  111 (112)
T ss_dssp             CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-TTTEEEEEEECCEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence            468899999999999999 99999999999999  654  6777777765 577899999997653

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.07  E-value=8.3e-10  Score=75.99  Aligned_cols=57  Identities=23%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.++  .++...+. ..++.+.++|.|+
T Consensus        32 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~R~   90 (91)
T 1m5z_A           32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVR--TRDFDCCLVVPLIA-ESGNKLDLVISRN   90 (91)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCEEEEEEEeC
Confidence            57889999999999999999999999999999  7764  44445554 3578899999885

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.06  E-value=2.6e-10  Score=80.32  Aligned_cols=59  Identities=20%  Similarity=0.302  Sum_probs=51.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.+  +.++...+.. .++++.++|.|++.
T Consensus        30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~   90 (102)
T 2d90_A           30 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKS--VEALDHDGVVEMIRK-GGDQTTLLVLDKEA   90 (102)
T ss_dssp             SSEEEECCCTTSTTTTTTCCTTCEEEEESSCB--CTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence            56899999999999999999999999999999  766  6888888876 47799999988654

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.06  E-value=1.1e-10  Score=84.46  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=54.5

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHh-hCCCCeEEEEEEECCEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGLINLA  176 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~-~~~g~~v~l~V~R~g~~~~~~  176 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.++.++...+. ...++++.++|.|+++.+++.
T Consensus        42 ~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~  107 (117)
T 1uit_A           42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGIN--LRSATEQQARLIIGQQCDTITILAQYNPHVHQLS  107 (117)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEECEETTEE--TTTCCHHHHHHHTTSCCSEEEEEECCCSCCCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCeEEEEEEECCchhhhh
Confidence            46889999999999999999999999999999  888776665543 356889999999988765443

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.06  E-value=3.2e-10  Score=83.24  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=55.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  ++++..++.. .+..+.|+|.|++...
T Consensus        46 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~  109 (129)
T 2dmz_A           46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN--IQGFANHDVVEVLRN-AGQVVHLTLVRRKTSS  109 (129)
T ss_dssp             CEEEEEEECTTSHHHHHTCCCSSCBEEEETTBC--CTTCCHHHHHHHHHH-CCSSEEEEEEEESSSS
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCccc
Confidence            568899999999999999 99999999999999  877  9999999988 7889999999987643

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.06  E-value=2.3e-10  Score=80.51  Aligned_cols=58  Identities=22%  Similarity=0.261  Sum_probs=50.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.  ++.++..++.... ..+.++|.|++
T Consensus        36 ~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~   95 (100)
T 1whd_A           36 SPVRVQAVDSGGPAERAGLQQLDTVLQLNERP--VEHWKCVELAHEIRSCP-SEIILLVWRVS   95 (100)
T ss_dssp             SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEE--CTTCCHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            34778999999999999999999999999999  77  5789988887754 46999999875

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.05  E-value=1.9e-10  Score=84.74  Aligned_cols=58  Identities=24%  Similarity=0.394  Sum_probs=53.1

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhh-CCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRK-NQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~-~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||++|| |++||+|++|||.+  +  .+++++..++.. ..|+++.|+|.|+
T Consensus        49 ~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~--v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           49 PYLQISHLINKGAAASDGILQPGDVLISVGHAN--VLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSC--CTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            457899999999999999 99999999999999  8  489999999987 5689999999997

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.05  E-value=5.1e-10  Score=78.64  Aligned_cols=59  Identities=24%  Similarity=0.237  Sum_probs=50.8

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+.. .++.+.++|.|++.
T Consensus        37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~   98 (101)
T 2jik_A           37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQD--LKNLLHQDAVDLFRN-AGYAVSLRVQHRLE   98 (101)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHT-CCSEEEEEEEEESC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence            468899999999999999 99999999999999  765  5787777765 47789999998764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.05  E-value=6.7e-10  Score=76.92  Aligned_cols=58  Identities=17%  Similarity=0.285  Sum_probs=51.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..++|..|.++|||+++| |++||+|++|||.+  +  .+++++..+++...+ .+.++|.|..
T Consensus        28 ~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~~~~   88 (93)
T 3o46_A           28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIP--VEDKRPEEIIQILAQSQG-AITFKIIPGS   88 (93)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--STTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence            467899999999999999 99999999999999  7  889999999987665 8888888754

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=4.7e-10  Score=77.67  Aligned_cols=58  Identities=21%  Similarity=0.179  Sum_probs=51.5

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC-CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v-~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      ..+++|..|.++|||+++| |++||+|++|||++  + .+++++..++... +.++.++|.|.
T Consensus        28 ~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~--v~~~~~~~~~~l~~~-~~~v~l~v~~~   87 (91)
T 2e7k_A           28 GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQP--VGSDPRALQELLRNA-SGSVILKILSG   87 (91)
T ss_dssp             SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            3568899999999999987 99999999999999  8 8999999999874 56888888874

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.05  E-value=6.7e-10  Score=81.76  Aligned_cols=60  Identities=20%  Similarity=0.215  Sum_probs=53.3

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC-CCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~-g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.  ++.++..++.... ++.+.|+|.|++.
T Consensus        43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC--VLGHTHAQVVKIFQSIPIGASVDLELCRGYP  106 (129)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            347899999999999999 99999999999999  76  5889999998864 8899999999763

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.05  E-value=2e-10  Score=82.71  Aligned_cols=56  Identities=13%  Similarity=0.157  Sum_probs=51.0

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      .++|..|.++|||++|||++||+|++|||++  +.  +|+++..++....++++.|+|.|
T Consensus        37 ~v~V~~V~~~spA~~aGL~~GD~Il~InG~~--v~~~~~~d~~~~i~~~~~~~v~l~V~~   94 (111)
T 1vae_A           37 PVQVHFLDPHCSASLAGAKEGDYIVSIQGVD--CKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             SCEECCCCTTSSHHHHHCCTTCEEEEETTEE--CSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence            4678999999999999999999999999999  88  99999999988777788888876

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.04  E-value=8.2e-10  Score=81.63  Aligned_cols=59  Identities=25%  Similarity=0.284  Sum_probs=53.0

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g  170 (195)
                      ++++|..|.++|||+++| |++||+|++|||++  +.  +++++..++... .+..+.|+|.|++
T Consensus        65 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A           65 LCAFITKVKKGSLADTVGHLRPGDEVLEWNGRL--LQGATFEEVYNIILESKPEPQVELVVSRSG  127 (131)
T ss_dssp             EEEEEEEECTTSHHHHTSCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence            478899999999999999 99999999999999  64  579999999875 6789999999865

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=3.4e-10  Score=81.91  Aligned_cols=60  Identities=20%  Similarity=0.187  Sum_probs=52.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      ++++|..|.++|||+++| |++||+|++|||.+  +.+  +.++..++.. .+..+.|+|.|++..
T Consensus        49 ~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIP--LTSKTYEEVQSIISQ-QSGEAEICVRLDLNM  111 (117)
T ss_dssp             EEEEEEEECTTCHHHHHSSCCTTCEEEEETTEE--CTTCCHHHHHHHHSC-CSSCEEEEEESSCCC
T ss_pred             cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhc-CCCEEEEEEEECCcc
Confidence            368899999999999999 99999999999999  654  8888888876 567899999998753

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.04  E-value=8.9e-10  Score=76.42  Aligned_cols=59  Identities=25%  Similarity=0.390  Sum_probs=50.8

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+.. .+.++.++|.|++.
T Consensus        33 ~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r~g~   94 (97)
T 2iwn_A           33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN--LQGFTNQQAVEVLRH-TGQTVLLTLMRRGE   94 (97)
T ss_dssp             CCCEEEEECTTCHHHHHCCCCTTCEEEEETTEE--CTTSCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred             CCEEEEEeCCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence            468899999999999999 99999999999999  664  5777777765 77899999998764

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=1.6e-10  Score=81.38  Aligned_cols=59  Identities=15%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.++.+. .++.. ..++++.++|.|+++
T Consensus        35 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~-~~~~~~~~~~~v~l~v~R~g~   94 (101)
T 1uez_A           35 VGIYVSLVEPGSLAEKEGLRVGDQILRVNDKS--LARVTHA-EAVKALKGSKKLVLSVYSAGR   94 (101)
T ss_dssp             CCEEEEEECTTSHHHHHTCCSSCCEEEETTEE--CSSCCHH-HHHHHSSSSSSCCEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHH-HHHHhhcCCCeEEEEEEECCc
Confidence            46889999999999999999999999999999  8877663 33333 456688999998875

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.04  E-value=4.2e-10  Score=81.49  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=55.2

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLIN  174 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~  174 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.  ++.++...+....+..+.+++.|++...+
T Consensus        42 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~~  107 (119)
T 1x6d_A           42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKS--LKGTTHHDALAILRQAREPRQAVIVTRKLTPEA  107 (119)
T ss_dssp             SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEE--CSSCCHHHHHHHHHHTTSSSEEEEEEECCCSSS
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEcCCCccc
Confidence            568999999999999999 99999999999999  76  69999999988777777788899876543

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.04  E-value=3.9e-10  Score=80.02  Aligned_cols=60  Identities=25%  Similarity=0.288  Sum_probs=50.7

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+ +||++||+|++|||++  +.++.++...+.. ..++++.++|.|+++.
T Consensus        39 ~gv~V~~V~~~spA~-agl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           39 TSIVISDVLKGGPAE-GQLQENDRVAMVNGVS--MDNVEHAFAVQQLRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             CCEEEEEECTTSTTB-TTBCTTCEEEEETTEE--CTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred             CCEEEEEECCCCchh-hCCCCCCEEEEECCEE--CCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence            478999999999999 9999999999999999  8887666554433 5688999999997753

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=5.6e-10  Score=79.41  Aligned_cols=61  Identities=18%  Similarity=0.251  Sum_probs=53.2

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      ..+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+.. .+.++.++|.|++..
T Consensus        41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~  104 (108)
T 1q7x_A           41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS--LEGATHKQAVETLRN-TGQVVHLLLEKGQSP  104 (108)
T ss_dssp             SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEE--CBSCTTSHHHHHHHH-TTSEEEEEEECCCCS
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence            3578999999999999999 99999999999999  66  77788888876 478999999998753

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.03  E-value=9.8e-10  Score=77.87  Aligned_cols=59  Identities=24%  Similarity=0.262  Sum_probs=51.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+.. .++++.++|.|++.
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~   99 (106)
T 3axa_A           38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS--LVGLSQERAAELMTR-TSSVVTLEVAKQGA   99 (106)
T ss_dssp             EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEECCCS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence            468899999999999999 99999999999999  65  58888877765 67899999999875

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.03  E-value=4.3e-11  Score=86.07  Aligned_cols=69  Identities=22%  Similarity=0.328  Sum_probs=55.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHH--HHHHHHhhCCCCeEEEEEEEC-CEEEEEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQ-GGLINLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~--~l~~~l~~~~g~~v~l~V~R~-g~~~~~~l~~~~~  182 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.++.  ++...+...  ..+.++|.|+ ++..++.+.+..|
T Consensus        41 ~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~~~~~--~~v~l~v~r~~g~~~~~~~~~~~~  112 (114)
T 1x5n_A           41 PGIFISHVKPGSLSAEVGLEIGDQIVEVNGVD--FSNLDHKEAVNVLKSS--RSLTISIVAAAGRELFMTDRSGPS  112 (114)
T ss_dssp             CSEEEEEECTTSTTTTTTCCTTCEEEEETTEE--TTSCCTTHHHHHHHHC--SSEEEEECSSTTTHHHHSSCCCCS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcC--CeEEEEEEcCCCCceEEEeccCCC
Confidence            46899999999999999999999999999999  77664  466666553  5789999998 7665555555444

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.03  E-value=8.3e-10  Score=79.38  Aligned_cols=59  Identities=20%  Similarity=0.323  Sum_probs=52.5

Q ss_pred             CceEEEEEcCCChhhhcCC-CCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL-~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++|| ++||+|++|||++  +.  +++++..++.... .++.|+|.|+++
T Consensus        48 ~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~  109 (113)
T 1va8_A           48 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIE--IRGKDVNEVFDLLSDMH-GTLTFVLIPSSG  109 (113)
T ss_dssp             SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence            5688999999999999999 9999999999999  77  7899999987654 479999998775

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.03  E-value=2.5e-11  Score=102.86  Aligned_cols=69  Identities=19%  Similarity=0.225  Sum_probs=0.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW  182 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~  182 (195)
                      .+++|.+|.++|||++|||++||+|++|||++  +.++.++..++..  ++++.++|.|+|+.++++++|..|
T Consensus       254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~p~~~  322 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQS--VVSANDVSDVIKR--ESTLNMVVRRGNEDIMITVIPEEI  322 (332)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEeee
Confidence            47889999999999999999999999999999  9999999988864  678999999999999999999754

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.03  E-value=5.1e-10  Score=81.05  Aligned_cols=58  Identities=22%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      +++|..|.++|||+++| |++||+|++|||++  +  .+++++..++.. .+..+.|+|.|+++
T Consensus        43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~  103 (117)
T 1v62_A           43 VITIDRIKPASVVDRSGALHPGDHILSIDGTS--MEHCSLLEATKLLAS-ISEKVRLEILPVPQ  103 (117)
T ss_dssp             EEEEEECCTTSHHHHHTCCCTTCBEEEETTEE--TTSCCHHHHHHHHHS-CSSEEEEEECCBTT
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEECCC
Confidence            38899999999999999 99999999999999  7  779999999984 68899999999765

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.02  E-value=1.6e-09  Score=74.71  Aligned_cols=59  Identities=24%  Similarity=0.205  Sum_probs=50.1

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.+  +.++...+.. .+.++.++|.|.+.
T Consensus        29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~   90 (92)
T 2qg1_A           29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGED--VRNATQEAVAALLKC-SLGTVTLEVGRIST   90 (92)
T ss_dssp             CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEcccc
Confidence            578899999999999999 99999999999999  654  6777777765 46789999998763

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.02  E-value=2.8e-10  Score=82.96  Aligned_cols=61  Identities=11%  Similarity=0.164  Sum_probs=52.0

Q ss_pred             CceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          110 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      .+++|..|.++|||+++ ||++||+|++|||.+  +.+  +.++...++.. +..+.|+|.|+++..
T Consensus        53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~~~  116 (120)
T 2iwo_A           53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS--TEGMTHTQAVNLLKNA-SGSIEMQVVAGGDVS  116 (120)
T ss_dssp             EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCBHHHHHHHHHHC-CSEEEEEEECCTTSS
T ss_pred             CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECCccc
Confidence            35789999999999999 999999999999999  654  78888888775 457999999987643

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=4e-10  Score=79.25  Aligned_cols=58  Identities=12%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             ceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCc-HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL-LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~-~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .++|..|.++|||+++ ||++||+|++|||++  +.+ +.++...+... ++.+.|+|.|+++
T Consensus        36 ~v~V~~V~~~spA~~agGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~~~v~l~v~R~~~   95 (100)
T 2edp_A           36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTP--LYGSRQEALILIKGS-FRILKLIVRRRNS   95 (100)
T ss_dssp             EEEECCCCTTSHHHHHTSCCTTCEEEEETTEE--CCSCSHHHHHHHHTC-CSSCEEEEEECCC
T ss_pred             CeEEEEECCCCHHHHcCCCCCCCEEEEECCEE--ccchHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence            4688999999999999 999999999999999  776 46677777654 6789999999875

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.02  E-value=8.1e-10  Score=78.76  Aligned_cols=58  Identities=17%  Similarity=0.125  Sum_probs=51.7

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +  .+++++...++...+.++.|+|.|.
T Consensus        44 ~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~v~l~v~R~  104 (108)
T 2d92_A           44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYC--LDNTSLAEAVEILKAVPPGLVHLGICSG  104 (108)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEESSCB--CTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence            568899999999999999 99999999999999  6  4599999999887666899999874

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.02  E-value=8.6e-10  Score=81.07  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=52.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      ++++|..|.++|||+++| |++||+|++|||.+  +  .++.++..++... +..+.++|.|+++
T Consensus        65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~  126 (128)
T 1nf3_C           65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIE--VSGKSLDQVTDMMIAN-SRNLIITVRPANQ  126 (128)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEE--STTCCHHHHHHHHHHT-TTSEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence            468899999999999999 99999999999999  7  7899999998864 4569999999764

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=99.01  E-value=1.3e-09  Score=99.20  Aligned_cols=68  Identities=16%  Similarity=0.237  Sum_probs=61.6

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|.+|.++|||++|||++||+|++|||.+  + ++.++..++.. .+|+++.|+|.|+|+..++++++.
T Consensus       496 ~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~--v-~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~  564 (597)
T 4fgm_A          496 QGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQ--A-TEQSVKRILERYIPGDTVTIHAFRRDELMTLELTWQ  564 (597)
T ss_dssp             TEEEEEEECTTSHHHHHTCCTTCEEEEETTEE--C-CTTTHHHHHTTCCTTCEEEEEEEETTEEEEEEEECC
T ss_pred             CeEEEEEeCCCChHHHCCCCCCCEEEEECCEE--C-CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence            35789999999999999999999999999999  8 57888888876 578999999999999999998876

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.00  E-value=1.2e-09  Score=78.87  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=49.2

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ++++|..|.++|||+++| |++||+|++|||.+  +  .+++++..++....+ .+.++|.+
T Consensus        50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~~  108 (114)
T 2gzv_A           50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS--IKGKTKVEVAKMIQEVKG-EVTIHYNK  108 (114)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCS-EEEEEEEC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEe
Confidence            458899999999999999 99999999999999  8  889999998886544 57887764

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.00  E-value=1.7e-09  Score=76.12  Aligned_cols=58  Identities=26%  Similarity=0.298  Sum_probs=49.5

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ++++|..|.++|||+++| |++||+|++|||.+  +  .++.++...+.. .++++.++|.|++
T Consensus        35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r~~   95 (104)
T 3i4w_A           35 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKN-AGQTVTIIAQYKP   95 (104)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEE--CTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence            478999999999999999 99999999999999  7  456666666655 5678999999874

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.00  E-value=1.2e-09  Score=85.71  Aligned_cols=58  Identities=19%  Similarity=0.213  Sum_probs=53.4

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.+  ++++...+..  +..+.++|.|+|.
T Consensus       110 ~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~l~~--~~~v~l~v~r~g~  169 (192)
T 3k1r_A          110 CGLFISHLIKGGQADSVGLQVGDEIVRINGYS--ISSCTHEEVINLIRT--EKTVSIKVRHIGL  169 (192)
T ss_dssp             EEEEEEEECTTSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHTS--SSEEEEEEEECCE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHcC--CCeEEEEEEECCc
Confidence            46789999999999999999999999999999  777  9999998876  7899999999987

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.00  E-value=1.8e-09  Score=74.89  Aligned_cols=58  Identities=17%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..+++|..|.++|||++ ||++||+|++|||++  +.+  +.++...+.. .++++.++|.|+.
T Consensus        34 ~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~   93 (95)
T 1mfg_A           34 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKT-FQNTVELIIVREV   93 (95)
T ss_dssp             CCCEEEEEECTTSTTTT-TCCTTCEEEEETTEE--CTTCBHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred             CCCEEEEEECCCCchhh-CCCCCCEEEEECCEE--cCCCCHHHHHHHhhc-CCCeEEEEEEeCC
Confidence            45789999999999999 999999999999999  765  7777777764 5789999998853

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.5e-10  Score=84.93  Aligned_cols=59  Identities=17%  Similarity=0.294  Sum_probs=53.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.  +++++..++... +..+.|+|.|+++
T Consensus        61 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~  121 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAFEAGLCTGDRIIKVNGES--VIGKTYSQVIALIQNS-DTTLELSVMPKDS  121 (126)
T ss_dssp             CCCCBCCCCSSSHHHHHTCCSSCCCCEETTEE--CSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence            45788999999999999999999999999999  76  899999998864 8899999998764

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.99  E-value=7.9e-10  Score=79.57  Aligned_cols=61  Identities=30%  Similarity=0.363  Sum_probs=52.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.+  +.++...+.... ..+.|+|.|++...
T Consensus        43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~~~  106 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD--LRNSSHEEAITALRQTP-QKVRLVVYRDEAHY  106 (116)
T ss_dssp             SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEE--CSSSCHHHHHHHHHTCC-SEEEEEEECCSSCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCC-CeEEEEEEeCCccc
Confidence            468899999999999999 99999999999999  766  788888887644 78999999987643

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=3.4e-10  Score=79.69  Aligned_cols=58  Identities=19%  Similarity=0.338  Sum_probs=50.3

Q ss_pred             ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      +++|..|.++|||+++| |++||+|++|||++  +.+  +.++...+. ..+..+.|+|.|++.
T Consensus        37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~   97 (103)
T 1wfv_A           37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGES--TRDMTHARAIELIK-SGGRRVRLLLKRGTG   97 (103)
T ss_dssp             EEECCCBCTTSHHHHHCSSCTTCEEEEETTEE--CSSCCHHHHHHHHH-HHCSEECEEEECTTC
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence            67889999999999999 99999999999999  665  677777776 456789999999875

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.99  E-value=9.8e-10  Score=85.26  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=54.2

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.+  |.++...++. .++.+.|+|.|++...
T Consensus       130 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~  193 (196)
T 3gsl_A          130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG--LEDVMHEDAVAALKN-TYDVVYLKVAKPSNAE  193 (196)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCBHHHHHHHHHS-CCEEEEEEEEEESCCC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCCc--CCCCCHHHHHHHHHc-CCCeEEEEEeCCCCcc
Confidence            468999999999999999 99999999999999  877  9999999965 4678999999987644

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.99  E-value=1e-09  Score=80.54  Aligned_cols=59  Identities=15%  Similarity=0.173  Sum_probs=53.1

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC---cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN---LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~---~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.   ++.++..++.. .+..+.|+|.|+..
T Consensus        54 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~~  116 (128)
T 2db5_A           54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTP--LDQNISHQQAIALLQQ-TTGSLRLIVAREPV  116 (128)
T ss_dssp             EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCB--CSTTSCHHHHHHHHHH-CCSEEEEEEEECCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence            468899999999999999 99999999999999  76   89999999887 56899999999753

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.98  E-value=1.6e-09  Score=74.45  Aligned_cols=56  Identities=27%  Similarity=0.380  Sum_probs=49.4

Q ss_pred             ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      +++|..|.++|||+++| |++||+|++|||.+  +  .+++++..+++...+ ++.+++.+.
T Consensus        22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~i~~~~~-~v~L~v~~~   80 (88)
T 3e17_A           22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTV--TENMSLTDARKLIEKSRG-KLQLVVLRD   80 (88)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHTTT-EEEEEECCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEeCC
Confidence            57899999999999999 99999999999999  7  789999999987654 788877653

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.98  E-value=2.7e-09  Score=73.27  Aligned_cols=56  Identities=18%  Similarity=0.203  Sum_probs=48.0

Q ss_pred             CceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      .+++|..|.++|||+++ ||++||+|++|||.+  +.  ++.++...+... +.++.++|.|
T Consensus        30 ~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r   88 (90)
T 1qav_A           30 MPILISKIFKGLAADQTEALFVGDAILSVNGED--LSSATHDEAVQALKKT-GKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence            45789999999999999 999999999999999  65  477777777654 6789998887

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.97  E-value=1.8e-09  Score=78.40  Aligned_cols=57  Identities=14%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..+++.. +.++.++|.|.
T Consensus        53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~--v~~~~~~~~~~~l~~~-~~~v~L~v~R~  112 (118)
T 3b76_A           53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVE--LTEVSRSEAVALLKRT-SSSIVLKALEV  112 (118)
T ss_dssp             CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEE--GGGSCHHHHHHHHHSC-CSEEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            458899999999999999 99999999999999  77  899999988764 67899999874

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.97  E-value=1.3e-09  Score=76.06  Aligned_cols=57  Identities=19%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.+  +.++...+.. .+.++.++|.|.
T Consensus        31 ~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~   90 (96)
T 2qkv_A           31 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVSYALFKG-ANGKVSMEVTRP   90 (96)
T ss_dssp             SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEECC
T ss_pred             CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCcEEEEEEeC
Confidence            468999999999999999 99999999999999  754  4555555544 456899999885

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.97  E-value=2e-09  Score=78.59  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=49.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ++++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+....+ .+.++|.|
T Consensus        45 ~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r  103 (125)
T 3hpk_A           45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS--IKGKTKVEVAKMIQEVKG-EVTIHYNK  103 (125)
T ss_dssp             SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHSCS-EEEEEEEE
T ss_pred             CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEE
Confidence            457899999999999999 99999999999999  76  79999999987554 58999987

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.9e-09  Score=74.36  Aligned_cols=58  Identities=21%  Similarity=0.219  Sum_probs=49.7

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.  ++.++...+... +.++.++|.|+.
T Consensus        30 ~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~   90 (93)
T 2dkr_A           30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS--VEGEQHEKAVELLKAA-QGSVKLVVRSGP   90 (93)
T ss_dssp             CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEE--CTTSCHHHHHHHHHHC-CSEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCcEEEEEEeCC
Confidence            468899999999999996 99999999999999  76  578888888764 357899998864

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.97  E-value=2.3e-09  Score=74.95  Aligned_cols=53  Identities=13%  Similarity=0.241  Sum_probs=45.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      .+++|.+|.++|||++|||++||+|++|||++  +.  +|+++..++.+   ..++++|.
T Consensus        35 ~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~--v~~~~~~~l~~~l~~---~~l~ltV~   89 (94)
T 3kzd_A           35 RRLYVNSVKETGLASKKGLKAGDEILEINNRA--ADALNSSMLKDFLSQ---PSLGLLVR   89 (94)
T ss_dssp             CEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--GGGCCHHHHHHHHHS---SEEEEEEE
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC---CeEEEEEE
Confidence            46899999999999999999999999999999  66  58999988864   46777664

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.97  E-value=7.7e-10  Score=78.45  Aligned_cols=59  Identities=15%  Similarity=0.188  Sum_probs=51.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC----CCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN----QGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~----~g~~v~l~V~R~g  170 (195)
                      |.++|..|.++|||+++| |++||+|++|||.+  +.  +|+++..+|+..    .++++.+.|.|.+
T Consensus        32 ~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT--LRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN   97 (103)
T ss_dssp             SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEE--CTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred             CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcc
Confidence            556899999999999999 99999999999999  74  499999988864    6778999888864

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.97  E-value=4.5e-09  Score=82.40  Aligned_cols=58  Identities=12%  Similarity=0.153  Sum_probs=50.9

Q ss_pred             CceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++ ||++||+|++|||++  +.+|  .++...+.. .+.++.++|.|++
T Consensus        33 ~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   93 (200)
T 2qt5_A           33 GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGIN--LAKFRHDEIISLLKN-VGERVVLEVEYEL   93 (200)
T ss_dssp             SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEE--CTTSCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred             CCeEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEeccC
Confidence            35789999999999999 999999999999999  8887  888877654 4779999999876

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.96  E-value=1.9e-09  Score=94.97  Aligned_cols=65  Identities=15%  Similarity=0.189  Sum_probs=59.5

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV  177 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l  177 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.+++++.+++.. .++.+.++|.|+|+.+.+.+
T Consensus       386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~--v~~~~~~~~~l~~-~~~~v~l~v~R~g~~~~v~l  450 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAGIRPGDIIISANKKP--VTDVKSLQTIAQE-KKKELLVQVLRGPGSMYLLV  450 (451)
T ss_dssp             EEEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHTTS-SCSCEEEEEEETTEEEEEEE
T ss_pred             CceEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhc-CCCeEEEEEEECCEEEEEEe
Confidence            36789999999999999999999999999999  9999999999877 66789999999999887765

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.96  E-value=2e-09  Score=76.50  Aligned_cols=58  Identities=22%  Similarity=0.247  Sum_probs=50.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++.. .+.++.|+|.|++
T Consensus        40 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~  100 (107)
T 1wf8_A           40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS--LVGVTQNFAATVLRN-TKGNVRFVIGREK  100 (107)
T ss_dssp             EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEE--CBSCCHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCeEEEEEEeCC
Confidence            568899999999999999 99999999999999  65  57777777766 4789999999864

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.95  E-value=2.6e-09  Score=79.05  Aligned_cols=59  Identities=15%  Similarity=0.233  Sum_probs=51.5

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.  ++.++...++. .+..+.|+|.|.+.
T Consensus        65 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~~~~~  125 (132)
T 3l4f_D           65 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQ-GGNTLMVKVVMVTR  125 (132)
T ss_dssp             CSEEEEEECTTSGGGGGTCCTTCEEEEESSSB--CTTSCHHHHHHHHHH-TTTEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence            36899999999999999999999999999999  66  58888888877 66789999987654

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=5.5e-09  Score=74.14  Aligned_cols=59  Identities=19%  Similarity=0.348  Sum_probs=50.5

Q ss_pred             CCceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..+++|..|.++|||+++ ||++||+|++|||++  +.  ++.++...+.. .+.++.++|.|++
T Consensus        40 ~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~  101 (107)
T 1uhp_A           40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRD--LSRATHDQAVEAFKT-AKEPIVVQVLRRT  101 (107)
T ss_dssp             SCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEE--CTTCCHHHHHHHHHH-CCSSEEEEEEECC
T ss_pred             CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCcEEEEEEeCC
Confidence            357899999999999999 999999999999999  64  47788787776 4678999998864

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.95  E-value=3.1e-09  Score=91.80  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=60.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE---EEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG---LINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~---~~~~~l~~~  180 (195)
                      .+++|..|.++|||++|||++||+|++|||++  +.++  +++...+....|+++.++|.|+|.   .+++++++.
T Consensus        99 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l~r~  172 (388)
T 1fc6_A           99 KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTA--VKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQ  172 (388)
T ss_dssp             SCEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEECB
T ss_pred             CcEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEEEEc
Confidence            56889999999999999999999999999999  7775  788888887789999999999987   677777653

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=2.4e-09  Score=77.67  Aligned_cols=61  Identities=23%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      ..+++|..|.++|||+++| |++||+|++|||++  +.+  +.++...+... +..+.|+|.|++..
T Consensus        46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~~  109 (120)
T 2eno_A           46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQD--LKNLLHQDAVDLFRNA-GYAVSLRVQHRLQV  109 (120)
T ss_dssp             CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEE--CCSCCHHHHHHHHHHH-CSEEEEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCcC
Confidence            3568999999999999999 99999999999999  666  66888777654 67899999997653

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.95  E-value=1.2e-09  Score=77.27  Aligned_cols=54  Identities=24%  Similarity=0.333  Sum_probs=48.3

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVI  166 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V  166 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.  +++++..++....+ ++.|+|
T Consensus        48 ~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~-~v~l~v  103 (104)
T 2z17_A           48 MFTLICKIQEDSPAHCAGLQAGDVLANINGVS--TEGFTYKQVVDLIRSSGN-LLTIET  103 (104)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCBCCEETTEE--CTTCCHHHHHHHHHHTTT-EEEEEC
T ss_pred             CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCC-cEEEEE
Confidence            56899999999999999999999999999999  87  89999999988754 777765

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.94  E-value=3e-09  Score=77.58  Aligned_cols=67  Identities=22%  Similarity=0.324  Sum_probs=54.1

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEE-EEEEEe
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI-NLAVTP  179 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~-~~~l~~  179 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.  ++.++...+... +..+.|+|.|++... .+.++|
T Consensus        51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~~~~~~~P  121 (124)
T 2daz_A           51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQI--LYGRSHQNASAIIKTA-PSKVKLVFIRNEDAVNQMASGP  121 (124)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEECEESSCB--CTTSCHHHHHHHHHHS-CSEEEEEEEECTTHHHHBCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcccccccCC
Confidence            578999999999999999 99999999999999  74  477877777665 458999999987542 344443

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.93  E-value=2.1e-09  Score=84.27  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=55.1

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  +++++..++.. .++++.++|.|++...
T Consensus       135 ~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~  198 (200)
T 2qt5_A          135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIR--LLGTTHAEAMSILKQ-CGQEATLLIEYDVSVM  198 (200)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-TCSEEEEEEEEEEEC-
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCccC
Confidence            467899999999999999 99999999999999  88  99999999987 7889999999987643

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.93  E-value=2.1e-09  Score=76.65  Aligned_cols=57  Identities=19%  Similarity=0.131  Sum_probs=46.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|.+|.++|||+++| |++||+|++|||++  +.+  ..++...+.. .+.++.++|.|.
T Consensus        25 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~   84 (106)
T 2la8_A           25 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVCYALFKG-ANGKVSMEVTRP   84 (106)
T ss_dssp             SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCB--CSSSCHHHHHHHHHS-CBSCEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence            568999999999999999 99999999999999  754  4555555544 456799999885

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.93  E-value=1.2e-09  Score=80.34  Aligned_cols=60  Identities=22%  Similarity=0.252  Sum_probs=52.3

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhC------CCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN------QGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~------~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.+  +.++..+|+..      .+..+.|+|.|++.
T Consensus        55 ~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A           55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGET--LLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEE--STTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence            357899999999999999 99999999999999  655  88999888764      47899999999764

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.4e-09  Score=78.71  Aligned_cols=56  Identities=13%  Similarity=0.218  Sum_probs=48.4

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++||++||+|++|||++  +.+  |+++..++..   ..+.|+|.|..
T Consensus        44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~---~~v~l~v~R~p  101 (114)
T 2d8i_A           44 RRLYVNSVKETGLASKKGLKAGDEILEINNRA--ADALNSSMLKDFLSQ---PSLGLLVRTYP  101 (114)
T ss_dssp             EEEEEEECCTTSSHHHHTCCTTCCEEEESSCB--GGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence            46889999999999999999999999999999  666  7888888864   38889888853

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.92  E-value=4.2e-09  Score=71.81  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=46.8

Q ss_pred             ceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          111 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      +++|..|.++|||++ +||++||+|++|||.+  +  .++.++...+.. .+.++.++|.+
T Consensus        29 ~~~V~~V~~gspA~~~agl~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~~   86 (87)
T 4e34_A           29 PILISEIHPGQPADRCGGLHVGDAILAVNGVN--LRDTKHKEAVTILSQ-QRGEIEFEVVY   86 (87)
T ss_dssp             EEEEEEECTTSHHHHHSCCCTTEEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred             CEEEEEECCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence            478999999999999 7999999999999999  6  567888888875 45678887754

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.92  E-value=1.3e-09  Score=80.37  Aligned_cols=60  Identities=18%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             CceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      ..++|..|.++|||+++ ||++||+|++|||++  +.+  ++++..+++...+..+.++|.|++.
T Consensus        57 ~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~  119 (130)
T 1i16_A           57 KPLTINRIFKGAASEQSETVQPGDEILQLGGTA--MQGLTRFEAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             CCCEEEEECSSCCCSSSCCCCTTCCEEECSSCB--GGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCceEEEEEEeCCC
Confidence            34889999999999999 999999999999999  554  8999999988777889999988653

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.92  E-value=3.6e-09  Score=74.98  Aligned_cols=57  Identities=12%  Similarity=0.141  Sum_probs=48.2

Q ss_pred             ceEEEEEcCCChhhhcC--CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC---CCeEEEEEEEC
Q 029301          111 FAVIDEITDASPAAEDG--LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ---GNAVPVVIMRQ  169 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG--L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~---g~~v~l~V~R~  169 (195)
                      +++|..|.++|||+++|  |++||+|++|||.+  +.  ++.++...+....   +..+.|+|.|+
T Consensus        44 ~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~--v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD--IAEHTHDQVVLFIKASCERHSGELMLLVRPN  107 (107)
T ss_dssp             EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEE--CTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred             CeEEEEECCCCchHHcCCccCCCCEEEEECCEE--CCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence            47899999999999999  99999999999999  66  4577777777643   35899998874

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.91  E-value=1.1e-08  Score=79.63  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=55.8

Q ss_pred             cCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEE---CCEEEEEEEEe
Q 029301          108 RRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMR---QGGLINLAVTP  179 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R---~g~~~~~~l~~  179 (195)
                      ...+++|..|.++|||++ ||++||+|++|||++  +.+  +.++...+... +..+.|.|.|   +|+...+.+.+
T Consensus        22 ~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~~G~~~~~~v~~   94 (195)
T 2qbw_A           22 DDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKTF-QNTVELIIVREVGNGAKQEIRVRV   94 (195)
T ss_dssp             TCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEE--CTTCCHHHHHHHHHHC-CSEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCCCEEEEEECCCChHHh-CCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEcCCCCCCceeEeEe
Confidence            346789999999999999 999999999999999  655  66777777664 4589999999   88777666554

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.91  E-value=4.7e-09  Score=71.60  Aligned_cols=55  Identities=22%  Similarity=0.214  Sum_probs=46.9

Q ss_pred             EEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      .|..|.++|||+++||++||+|++|||++..-.+.+++.+.|+ ..+..++++|..
T Consensus        26 ~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p   80 (82)
T 1r6j_A           26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP   80 (82)
T ss_dssp             EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence            4789999999999999999999999999933346889999998 567788888764

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.91  E-value=2.6e-09  Score=75.26  Aligned_cols=58  Identities=17%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..+++|..|.++|||++ ||++||+|++|||.+  +.+  +.++...+.. .++++.++|.|+.
T Consensus        42 ~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~  101 (103)
T 1n7t_A           42 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKT-FQNTVELIIVREV  101 (103)
T ss_dssp             CCSEECCCBSSSSTTSS-SCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred             CCCEEEEEECCCCchHH-CCCCCCEEEEECCEE--CCCCCHHHHHHHhhc-CCCeEEEEEEecC
Confidence            45788999999999999 999999999999999  755  7777777764 5788999998863

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=1.4e-09  Score=75.97  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=49.2

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+ +||++||+|++|||++  +.+  +.++...+.. .++.+.++|.|++
T Consensus        31 ~~~~V~~V~~~spA~-agL~~GD~Il~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   89 (96)
T 2edv_A           31 LPLTVVAVTAGGSAH-GKLFPGDQILQMNNEP--AEDLSWERAVDILRE-AEDSLSITVVRCT   89 (96)
T ss_dssp             SSCBCCCBCSSSSST-TTSCTTCBEEEESSCB--STTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred             CCeEEEEECCCCchh-hCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            357889999999995 9999999999999999  654  7788777776 6789999999976

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.8e-09  Score=76.45  Aligned_cols=59  Identities=15%  Similarity=0.218  Sum_probs=50.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.  ++.++...+... +..+.++|.|.+.
T Consensus        32 ~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~   92 (106)
T 2eei_A           32 KGVYMTDITPQGVAMRAGVLADDHLIEVNGEN--VEDASHEEVVEKVKKS-GSRVMFLLVDKET   92 (106)
T ss_dssp             CSCEECCCCTTSHHHHHTCCSSEEEEEETTEE--CTTCCHHHHHHHHHHH-CSEEEEEECCTTT
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcCch
Confidence            56889999999999999999999999999999  65  568887777653 5688999988654

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.89  E-value=1.1e-09  Score=78.33  Aligned_cols=59  Identities=17%  Similarity=0.187  Sum_probs=51.8

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..+++|..|.++|||+++| |++||+|++|||++  +.  ++.++..++.. .+..+.|+|.|+.
T Consensus        43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~  104 (111)
T 1uju_A           43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQS--LLGLTHGEAVQLLRS-VGDTLTVLVCDGF  104 (111)
T ss_dssp             CCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCB--CTTSCHHHHHHHHSS-CSSEEEECCCCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            3568999999999999999 99999999999999  77  78998888865 5788999988864

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.88  E-value=7.7e-09  Score=79.82  Aligned_cols=57  Identities=19%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +  .++.++...++. .+..+.|+|.|+
T Consensus       111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~--v~~~~~~~~~~~l~~-~g~~v~L~V~R~  170 (170)
T 3egg_C          111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS--LVGVTQSFAASVLRN-TKGRVRFMIGRE  170 (170)
T ss_dssp             BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTBCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence            568899999999999999 99999999999999  6  678899888887 567999999885

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.88  E-value=4.3e-09  Score=76.06  Aligned_cols=58  Identities=26%  Similarity=0.284  Sum_probs=47.8

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHH--HHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERL--AAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l--~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.++.+.  ...+. ..+.++.++|.|++
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~~~~v~l~v~r~~   98 (119)
T 1tp5_A           38 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALK-NAGQTVTIIAQYKP   98 (119)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEE--CTTCCHHHHHHHHH-TSCSEEEEEEEECH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEECC
Confidence            578999999999999999 99999999999999  8776433  33333 46789999999865

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.88  E-value=4.4e-09  Score=82.37  Aligned_cols=58  Identities=24%  Similarity=0.319  Sum_probs=53.8

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|.+|.++|||+++| |++||+|++|||.+  +.+  ++++..++... ++.+.++|.|++
T Consensus       135 ~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~~  195 (196)
T 1p1d_A          135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIR--LDSCSMEDAVQILQQC-EDLVKLKIRKDE  195 (196)
T ss_dssp             CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEE--GGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred             CCEEEEEECCCCcHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence            467999999999999999 99999999999999  887  99999999887 889999999976

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.87  E-value=6.6e-09  Score=72.55  Aligned_cols=58  Identities=17%  Similarity=0.212  Sum_probs=50.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCC-CCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ-GNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~-g~~v~l~V~R~g~  171 (195)
                      .+.+|..|.+  +|+++||++||+|++|||++  +.+  |+++..+++..+ ++++.|+|.|++.
T Consensus        32 ~Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           32 TGQRVKQILD--IQGCPGLCEGDLIVEINQQN--VQNLSHTEVVDILKDCPIGSETSLIIHRGSG   92 (96)
T ss_dssp             TEEEEEEESC--GGGSTTCCSSCEEEEETTEE--CSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred             CCEEEEEEec--ccccCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence            3678899988  37899999999999999999  754  699999998864 8899999999864

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.87  E-value=4.7e-09  Score=76.04  Aligned_cols=57  Identities=18%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             ceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCc--HHHHHHHHhhC---CCCeEEEEEEEC
Q 029301          111 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL--LERLAAEGRKN---QGNAVPVVIMRQ  169 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~---~g~~v~l~V~R~  169 (195)
                      .++|..|.++|||+++ ||++||+|++|||.+  +.+  ++++...++..   .|+++.|+|.|.
T Consensus        44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~  106 (118)
T 1v6b_A           44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKI--VTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCB--CTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence            3789999999999999 999999999999999  665  88988888753   478999999984

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.87  E-value=9.3e-09  Score=72.60  Aligned_cols=58  Identities=19%  Similarity=0.230  Sum_probs=49.4

Q ss_pred             ceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      +++|..|.++|||+++ ||++||+|++|||.+  +  .++.++...+.... ..+.++|.|...
T Consensus        36 ~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~~~~~   96 (103)
T 2dc2_A           36 PILISEIHPGQPADRCGGLHVGDAILAVNGVN--LRDTKHKEAVTILSQQR-GEIEFEVVYVAL   96 (103)
T ss_dssp             EEEEEEECTTSHHHHHTCCCSSEEEEEETTEE--STTSCHHHHHHHHHHCC-SEEEEEEEECC-
T ss_pred             CEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCC-CcEEEEEEecCC
Confidence            5789999999999995 999999999999999  6  45899998888754 488999888643

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.87  E-value=5.1e-09  Score=75.50  Aligned_cols=60  Identities=20%  Similarity=0.299  Sum_probs=50.8

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      ..+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+.. .++.+.|+|.|...
T Consensus        49 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           49 LKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVD--LQNASHSEAVEAIKN-AGNPVVFIVQSLSS  111 (117)
T ss_dssp             CCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCB--CTTCCHHHHHHHHHT-SCSSEEEEECCBSC
T ss_pred             cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence            3578999999999999999 99999999999999  644  7788877765 57789999987543

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.86  E-value=3.3e-09  Score=76.74  Aligned_cols=60  Identities=12%  Similarity=0.132  Sum_probs=50.8

Q ss_pred             ceEEEEEcCCChhhhc--CCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC---CCeEEEEEEECCEE
Q 029301          111 FAVIDEITDASPAAED--GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ---GNAVPVVIMRQGGL  172 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~a--GL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~---g~~v~l~V~R~g~~  172 (195)
                      +++|..|.++|||+++  ||++||+|++|||.+  +.  ++.++...+....   +.++.++|.|+...
T Consensus        42 ~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~--v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~  108 (119)
T 2cs5_A           42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD--IAEHTHDQVVLFIKASCERHSGELMLLVRPNAVY  108 (119)
T ss_dssp             EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBC--TTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCCC
T ss_pred             CeEEEEECCCCHHHHhhcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhccccCCCEEEEEEEccccc
Confidence            4789999999999999  999999999999999  65  4788888887643   35899999997653

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.80  E-value=9.1e-10  Score=97.02  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=61.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|.+|.++|||++|||++||+|++|||++  +.++.++..++.. ..|+++.++|.|+|+..++++++.
T Consensus       286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~  355 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ  355 (448)
T ss_dssp             CSEECCCCTTCSSSTTTTCCTTCEECBSSSSB--CCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC--
T ss_pred             CceEEEEeccCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEe
Confidence            47889999999999999999999999999999  9999999998876 578899999999998887776653

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.79  E-value=1.2e-08  Score=88.34  Aligned_cols=59  Identities=24%  Similarity=0.327  Sum_probs=53.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhh-CCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRK-NQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~-~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.+||||++|||++||+|++|||.+  +.+  ++++...+.. ..|+++.++|.|++
T Consensus        31 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~--v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~   92 (391)
T 3tsz_A           31 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKK   92 (391)
T ss_dssp             TEEEEEEECTTCHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence            57889999999999999999999999999999  754  9999999987 68899999999875

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.78  E-value=1.2e-08  Score=73.65  Aligned_cols=60  Identities=22%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      ..+++|..|.++|||+ +||++||+|++|||++  +.+  +.++...+.. .++.+.|+|.|.+..
T Consensus        45 ~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~  106 (117)
T 2csj_A           45 ETSIVISDVLPGGPAD-GLLQENDRVVMVNGTP--MEDVLHSFAVQQLRK-SGKIAAIVVKRPRKV  106 (117)
T ss_dssp             CCBCEEEEECTTSSHH-HHBCTTCEEEEESSCB--CBTCCHHHHHHHHHH-SCSEEEEEEEEEEEC
T ss_pred             CCCEEEEEECCCCccc-ccCCCCCEEEEECCEE--CCCcCHHHHHHHHhc-CCCeEEEEEEECCcc
Confidence            3568999999999997 9999999999999999  654  6777777776 578999999986553

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.77  E-value=2.9e-09  Score=92.18  Aligned_cols=81  Identities=17%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             cCCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcH--HHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEeccCC
Q 029301          108 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRPWQ  183 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~--~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~~~~  183 (195)
                      ..++++|..|.++|||+++| |++||+|++|||.+  +.+|  .++...+... .+..+.++|.|++...++.+....  
T Consensus       230 ~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~--v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~~v~l~~~~--  305 (388)
T 3suz_A          230 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTS--LVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPD--  305 (388)
T ss_dssp             CSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEE--CSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC----------
T ss_pred             cCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEE--ccCCCHHHHHHHHHhccCCCccccccccccccceeeEeecC--
Confidence            34568999999999999999 99999999999999  8777  6777888764 567799999998877666663321  


Q ss_pred             CceeeeEEE
Q 029301          184 GRGLLGCHF  192 (195)
Q Consensus       184 ~~~~lGi~l  192 (195)
                      ..+.||+.+
T Consensus       306 ~~~~lG~~i  314 (388)
T 3suz_A          306 LKYQLGFSV  314 (388)
T ss_dssp             ---------
T ss_pred             CCCccceEE
Confidence            234566654

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.76  E-value=9e-09  Score=73.46  Aligned_cols=58  Identities=26%  Similarity=0.298  Sum_probs=48.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++| |++||+|++|||++  +.++  .++...+. ..++.+.++|.|++
T Consensus        39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~~~-~~~~~v~l~v~r~~   99 (113)
T 1um7_A           39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVN--LRNATHEQAAAALK-RAGQSVTIVAQYRP   99 (113)
T ss_dssp             CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCB--CTTCCHHHHHHHHH-SCCSEEEEEEECCH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-hCCCcEEEEEEECc
Confidence            467889999999999999 99999999999999  7664  66666665 45778999998865

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.76  E-value=2.5e-08  Score=89.55  Aligned_cols=68  Identities=18%  Similarity=0.212  Sum_probs=57.6

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHH----------HHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLER----------LAAEGRK-NQGNAVPVVIMRQGGLINLAVT  178 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~----------l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~  178 (195)
                      .+++|.+|.++|||+++ |++||+|++|||++  +.+..+          +..++.. .+|+++.|+|.|+|+.++++++
T Consensus       277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~--V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vt  353 (539)
T 4fln_A          277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLH--VGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVV  353 (539)
T ss_dssp             BCEEEEEECTTSGGGGT-CCTTCEEEEETTEE--CBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEE
T ss_pred             CceeeecccCCChHHhC-ccCCCEEEEECCEE--eCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEE
Confidence            48999999999999876 99999999999999  654332          5566665 6899999999999999998887


Q ss_pred             ec
Q 029301          179 PR  180 (195)
Q Consensus       179 ~~  180 (195)
                      ..
T Consensus       354 l~  355 (539)
T 4fln_A          354 LR  355 (539)
T ss_dssp             CB
T ss_pred             Ec
Confidence            64

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.75  E-value=2.9e-09  Score=85.30  Aligned_cols=68  Identities=22%  Similarity=0.314  Sum_probs=58.1

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeE-EEEEEECCEEE--EEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAV-PVVIMRQGGLI--NLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v-~l~V~R~g~~~--~~~l~~~  180 (195)
                      .+++|..|.++|||+++||++||+|++|||.+  +.  +++++..++... |..+ .++|.|+|...  ++.+++.
T Consensus        33 ~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~--V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g~~~~~~v~v~p~  105 (216)
T 2krg_A           33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAG-GDETKLLVVDRETDEFFKKCRVIPS  105 (216)
T ss_dssp             CSCBEEEECTTSHHHHHTCCTTCBCCEETTEE--CTTCCTHHHHHHHHHH-CSEEEEEECCHHHHHHHHHHTCCCC
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhc-CCeEEEEEEEECCEEEEEEEEEEEe
Confidence            46889999999999999999999999999999  88  899999988776 7788 88898888655  4555443

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.69  E-value=8.1e-09  Score=89.81  Aligned_cols=57  Identities=18%  Similarity=0.119  Sum_probs=49.7

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      +++|..|.++|||++|||++||+|++|||++  +.+++ +..++.. .|.++.|+|.|+|.
T Consensus        91 ~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~--v~~~~-~~~~l~~-~g~~v~l~v~R~g~  147 (403)
T 3k50_A           91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDY--ITKKV-ESELLQG-STRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTCEEEEETTBC--BCTTT-GGGGTSC-SCEEEEEEEEEEEC
T ss_pred             eEEEEEeCCCChHHHcCCCCCCEEEEECCEE--ccchh-HHHHhhC-CCCEEEEEEEeCCc
Confidence            4789999999999999999999999999999  87774 6666666 88899999999764

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.69  E-value=3.3e-08  Score=77.54  Aligned_cols=57  Identities=19%  Similarity=0.131  Sum_probs=49.3

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|.+|.++|||+++| |++||+|++|||++  +.+  +.++...++. .++.+.|+|.|.
T Consensus       136 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~--v~~~~~~~~~~~l~~-~~~~v~L~V~R~  195 (206)
T 3r0h_A          136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVCYALFKG-ANGKVSMEVTRP  195 (206)
T ss_dssp             SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred             ceEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            568999999999999999 99999999999999  774  4788888865 456899999884

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.64  E-value=6.2e-08  Score=85.65  Aligned_cols=59  Identities=24%  Similarity=0.327  Sum_probs=53.7

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhh-CCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRK-NQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~-~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.+||||+++||++||+|++|||.+  +.+  ++++...|.. ..|..+.|+|.|++
T Consensus        23 ~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~--v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g   84 (468)
T 3shw_A           23 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKK   84 (468)
T ss_dssp             TEEEEEEECSSSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            57889999999999999999999999999999  766  9999999987 47889999999965

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.64  E-value=1.6e-07  Score=67.74  Aligned_cols=59  Identities=22%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEECCEEE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQGGLI  173 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g~~~  173 (195)
                      +..|..|.+  |++.+||++||+|++|||.+  +.  +++++...|+.. .|..+.|+|.|++...
T Consensus        35 g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~--v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~   96 (113)
T 3soe_A           35 GQKVKMILD--SQWCQGLQKGDIIKEIYHQN--VQNLTHLQVVEVLKQFPVGADVPLLILRGGPPS   96 (113)
T ss_dssp             EEEEEEESC--GGGSTTCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC-
T ss_pred             CcEEEEecC--hHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCCCEEEEEEEECCccC
Confidence            345777776  68899999999999999999  76  678999999874 5889999999988643

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.60  E-value=4.7e-09  Score=92.42  Aligned_cols=65  Identities=20%  Similarity=0.265  Sum_probs=0.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV  177 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l  177 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.+++++..++....+ .+.|+|.|+|+.+++.+
T Consensus       383 ~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~--v~~~~~l~~~l~~~~~-~v~l~v~R~g~~~~~~l  447 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQA--VKNIAELRKVLDSKPS-VLALNIQRGDSTIYLLM  447 (448)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHcCCC-eEEEEEEECCEEEEEEe
Confidence            35788999999999999999999999999999  9999999999887655 88999999998776654

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.03  E-value=5e-09  Score=75.36  Aligned_cols=55  Identities=20%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             CceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEE
Q 029301          110 PFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      .+++|..|.++|||++ +||++||+|++|||.+  +  .++.++...++... ..+.++|.
T Consensus        53 ~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~--v~~~~~~~~~~~l~~~~-~~v~l~V~  110 (112)
T 2lob_A           53 VPILISEIHPGQPADRCGGLHVGDAILAVNGVN--LRDTKHKEAVTILSQQR-GEIEFEVV  110 (112)
Confidence            3578999999999999 9999999999999999  7  56888888776533 34666654

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.55  E-value=9.3e-08  Score=78.63  Aligned_cols=59  Identities=17%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             CceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          110 PFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .+++|..|.++|||++ +||++||+|++|||++  +.+  +.++..+++.. ++.+.|+|.|.++
T Consensus       103 ~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~--v~~~t~~e~v~~l~~~-g~~V~L~V~R~~~  164 (263)
T 1z87_A          103 MPILISKIFKGLAADQTEALFVGDAILSVNGED--LSSATHDEAVQALKKT-GKEVVLEVKYMKE  164 (263)
T ss_dssp             EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCB--CTTSCHHHHHHHHHHC-CSCCCEEEECCSS
T ss_pred             CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCcCHHHHHHHHhcC-CCeEEEEEEeCcc
Confidence            3578999999999999 7999999999999999  655  78888888775 6679999998654

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.39  E-value=3.6e-08  Score=75.20  Aligned_cols=33  Identities=24%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             EEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH
Q 029301          113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL  147 (195)
Q Consensus       113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~  147 (195)
                      +|..|.++|||+++||++||+|++|||.+  +.+|
T Consensus       110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~--v~~~  142 (166)
T 1w9e_A          110 KITSIVKDSSAARNGLLTEHNICEINGQN--VIGL  142 (166)
T ss_dssp             EEEEECTTSHHHHTTCCSSEEEEEETTEE--CTTC
T ss_pred             EEEEEccCCHHHHcCCCCCCEEEEECCEE--CCCC
Confidence            78899999999999999999999999999  7765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.38  E-value=5.2e-07  Score=83.66  Aligned_cols=60  Identities=25%  Similarity=0.382  Sum_probs=50.7

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      ..+++|..|.++|||+++| |++||+|++|||.+  +.++  .++...+.. .|..+.++|.|++.
T Consensus        88 ~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~  150 (721)
T 2xkx_A           88 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD--VREVTHSAAVEALKE-AGSIVRLYVMRRKP  150 (721)
T ss_pred             CCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHhhc-cccccceEEEeccc
Confidence            4568999999999999999 99999999999999  7665  666666654 57789999999874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.36  E-value=6.9e-07  Score=85.11  Aligned_cols=68  Identities=13%  Similarity=0.100  Sum_probs=59.7

Q ss_pred             CCceEEEEEcCC--------ChhhhcC--CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC-EEEEEEE
Q 029301          109 RPFAVIDEITDA--------SPAAEDG--LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINLAV  177 (195)
Q Consensus       109 ~~~~~V~~V~~~--------SpA~~aG--L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g-~~~~~~l  177 (195)
                      ..+.+|..|.++        |||+++|  |+ ||+|++|||++  +.++.++..++....|+.+.|+|.|++ +.+++++
T Consensus       747 ~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~--~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~  823 (1045)
T 1k32_A          747 GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGET--VGAGSNIYRVLSEKAGTSARIRLSGKGGDKRDLMI  823 (1045)
T ss_dssp             TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEE--CBTTBCHHHHHHTTTTSEEEEEEECSSSCEEEEEE
T ss_pred             CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEE--ccchhhHHHhhcCCCCCEEEEEEECCCCceEEEEE
Confidence            356788999988        9999999  99 99999999999  888778888898888999999999987 5667787


Q ss_pred             Ee
Q 029301          178 TP  179 (195)
Q Consensus       178 ~~  179 (195)
                      ++
T Consensus       824 ~~  825 (1045)
T 1k32_A          824 DI  825 (1045)
T ss_dssp             EC
T ss_pred             EE
Confidence            75

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.27  E-value=6.7e-06  Score=57.32  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=48.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R  168 (195)
                      ...+|..+.++|||++.| |++||.|++|||+...-.+..++.+.|++ ..|.++++.+.+
T Consensus        28 g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~   88 (95)
T 3gge_A           28 GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE   88 (95)
T ss_dssp             SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence            346799999999999986 89999999999999333467899999988 457788887765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.20  E-value=3.2e-06  Score=78.38  Aligned_cols=58  Identities=26%  Similarity=0.296  Sum_probs=50.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  ++++...+... +..+.+.|.|+.
T Consensus       331 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~--v~~~~~~e~~~~l~~~-~~~v~L~v~r~~  391 (721)
T 2xkx_A          331 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKNA-GQTVTIIAQYKP  391 (721)
T ss_pred             CCeEEEEeCCCChHHhcCCCccCCEEEEECCEE--CCCCCHHHHHHHHHhc-CCeEEEEEEeCc
Confidence            467899999999999999 99999999999999  765  89999998764 567899998864

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.79  E-value=3e-06  Score=73.14  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=0.0

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+|.+|.++|||+++||++||+|++|||++  +.  +++++...+.. .+..+.++|.+.
T Consensus       317 g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~--v~~~s~~~~~~~l~~-~~~~v~L~V~p~  373 (388)
T 3suz_A          317 GIICSLMRGGIAERGGVRVGHRIIEINGQS--VVATAHEKIVQALSN-SVGEIHMKTMPA  373 (388)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CEEEEeecCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEec
Confidence            478899999999999999999999999999  75  57888887765 345667776543

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.74  E-value=6.2e-05  Score=67.59  Aligned_cols=61  Identities=11%  Similarity=0.037  Sum_probs=52.7

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      .+++|..|.++|+|..+|+++||+|++|||++  +.+..+|.+++....++.+.+.+. ++..+
T Consensus       415 ~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~--V~s~~~l~~~l~~~k~~~l~~~~~-~~~~i  475 (539)
T 4fln_A          415 QIVILSQVLANEVNIGYEDMNNQQVLKFNGIP--IRNIHHLAHLIDMCKDKYLVFEFE-DNYVA  475 (539)
T ss_dssp             CCEEEEEECCCGGGTTCSSCCSEEEEEETTEE--CCSHHHHHHHHHTCCSSEEEEEET-TSCEE
T ss_pred             eEEEEEEecCCchhhhcCCCCCCEEEeECCEE--cCCHHHHHHHHHHcCCCeEEEEEC-CCEEE
Confidence            36789999999999999999999999999999  999999999999888777776643 44443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=93.89  E-value=0.15  Score=27.97  Aligned_cols=29  Identities=17%  Similarity=0.304  Sum_probs=26.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301            4 TNLKAEIMSLMEKRSALEADMNAIIDRLS   32 (195)
Q Consensus         4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~   32 (195)
                      .++-+++.+|+.++.++|+|...|-+.|.
T Consensus         4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~   32 (34)
T 2oxj_A            4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            35778999999999999999999999984

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=92.91  E-value=0.24  Score=27.00  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=26.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301            4 TNLKAEIMSLMEKRSALEADMNAIIDRLS   32 (195)
Q Consensus         4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~   32 (195)
                      .++-+++.+|+.++.++|+|...|.+.|.
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~   31 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKKLVG   31 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            36778999999999999999999999984

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=92.83  E-value=0.27  Score=26.73  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301            5 NLKAEIMSLMEKRSALEADMNAIIDRLS   32 (195)
Q Consensus         5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~   32 (195)
                      ++-+++.+|+.++.++|.|...+-+.|.
T Consensus         4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~   31 (33)
T 3c3g_A            4 XIEXKLXEIXSKXYHXENXLARIKXLLX   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            5678999999999999999999999984

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=91.38  E-value=0.5  Score=25.79  Aligned_cols=28  Identities=11%  Similarity=0.181  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301            5 NLKAEIMSLMEKRSALEADMNAIIDRLS   32 (195)
Q Consensus         5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~   32 (195)
                      ++-+++.+|+.++.++|.|...+-+.|.
T Consensus         5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~   32 (34)
T 3c3f_A            5 QIEXKLEXILSXLYHXENEXARIXKLLX   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            5678999999999999999999999884

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=91.06  E-value=0.56  Score=25.67  Aligned_cols=29  Identities=14%  Similarity=0.218  Sum_probs=26.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301            4 TNLKAEIMSLMEKRSALEADMNAIIDRLS   32 (195)
Q Consensus         4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~   32 (195)
                      .++-+++.+|..++.++|.|...+-+.|.
T Consensus         4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~   32 (34)
T 1uo4_A            4 KQIEDKGEEILSKLYHIENELARIKKLLG   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence            35778999999999999999999999984

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=90.96  E-value=0.51  Score=25.85  Aligned_cols=28  Identities=11%  Similarity=0.267  Sum_probs=25.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301            5 NLKAEIMSLMEKRSALEADMNAIIDRLS   32 (195)
Q Consensus         5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~   32 (195)
                      ++-+++.+|+.++.++|.|...+-+.|.
T Consensus         5 QLEdKvEeLl~~~~~L~~EV~RLk~lL~   32 (34)
T 2bni_A            5 QIEDKLEEILSKGHHICNELARIKKLLG   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence            5778999999999999999999999884

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=90.75  E-value=0.61  Score=25.32  Aligned_cols=28  Identities=11%  Similarity=0.023  Sum_probs=25.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301            5 NLKAEIMSLMEKRSALEADMNAIIDRLS   32 (195)
Q Consensus         5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~   32 (195)
                      ++-+++.+|..++.++|.|+..+.+.|-
T Consensus         4 QLEdKVEell~~~~~le~EV~Rl~~ll~   31 (33)
T 2wq1_A            4 QLEDKIEENTSKIYHNTNEIARNTKLVG   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            5678999999999999999999999883

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=88.87  E-value=1  Score=24.62  Aligned_cols=27  Identities=7%  Similarity=0.119  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301            5 NLKAEIMSLMEKRSALEADMNAIIDRL   31 (195)
Q Consensus         5 ~~~~~~~~l~~~k~~iE~el~~~~~~L   31 (195)
                      ++-+++.+|..++..+|.|+..+...|
T Consensus         5 QledKvEel~~~~~~l~nEv~Rl~~lL   31 (34)
T 2r2v_A            5 QVADKLEEVASKLYHNANELARVAKLL   31 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            567899999999999999999999988

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=88.48  E-value=1.1  Score=24.41  Aligned_cols=29  Identities=10%  Similarity=0.166  Sum_probs=25.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301            4 TNLKAEIMSLMEKRSALEADMNAIIDRLS   32 (195)
Q Consensus         4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~   32 (195)
                      .++-+++.+|..++.++|.|...|.+.|-
T Consensus         4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~   32 (34)
T 2hy6_A            4 KQLADAVEELASANYHLANAVARLAKAVG   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            35778999999999999999999998883

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=87.83  E-value=1.3  Score=24.51  Aligned_cols=29  Identities=21%  Similarity=0.258  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301            5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ   33 (195)
Q Consensus         5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~   33 (195)
                      ++.+++.+|..++.++|.|...|-+.|.+
T Consensus         5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~   33 (36)
T 1kd8_B            5 QLKAKVEELKSKLWHLKNKVARLKKKNAE   33 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            57789999999999999999999998854

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=87.66  E-value=1.2  Score=24.68  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301            5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ   33 (195)
Q Consensus         5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~   33 (195)
                      ++-+++.+|..++.++|.|...|...|.+
T Consensus         5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~   33 (36)
T 1kd8_A            5 QLEAEVEEIESEVWHLENEVARLEKENAE   33 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence            56789999999999999999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	4e-05
d2hgaa1	103	b.36.1.6 (A:23-125) Uncharacterized protein MTH136	4e-04
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	5e-04
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	0.002
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	0.003
d1sota1	99	b.36.1.4 (A:255-353) Stress sensor protease DegS,	0.004

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 171
           A I E+     AA  G+  G  V K       ++    +AA   K  G  V +      G
Sbjct: 18  AKIVEVVAGGAAANAGVPKGVVVTKVDD-RPINSADALVAAVRSKAPGATVALTFQDPSG 76

Query: 172 -LINLAVT 178
               + VT
Sbjct: 77  GSRTVQVT 84

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.1 bits (83), Expect = 4e-04
 Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 7/80 (8%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
             ID +   SPA++  L  G  +                 L      + G  + +   + 
Sbjct: 5   VQIDSVVPGSPASK-VLTPGLVIESINGMPTSNLTTYSAAL---KTISVGEVINITTDQG 60

Query: 170 GGLINLAVTPRPWQGRGLLG 189
              +     P     R  +G
Sbjct: 61  TFHLKTGRNPNN-SSRAYMG 79

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 5e-04
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
            +I ++   SPA   GL+ GD +L  G   V+  +++ E +         + + V I R 
Sbjct: 33  VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT------QSQLAVQIRRG 86

Query: 170 GGLINLAVTP 179
              + L VTP
Sbjct: 87  RETLTLYVTP 96

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
            V++ +   +PAA+ GL+ GD ++      V+    L + L ++        + + I R 
Sbjct: 27  VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSV-----LALNIQRG 81

Query: 170 GGLINL 175
              I L
Sbjct: 82  DSTIYL 87

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
            + ++T  S A + GL+ GDQ+L+F  +       ++ A      Q + + ++      +
Sbjct: 45  YVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQ-ARLIIGQQCDTITILAQYNPHV 103

Query: 173 INLAVTPR 180
             L+   R
Sbjct: 104 HQLSSHSR 111

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 33.2 bits (75), Expect = 0.004
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 171
            V++E++   PAA  G+Q+ D ++     +   + LE +        G+ +PVV+MR   
Sbjct: 28  IVVNEVSPDGPAANAGIQVNDLIISVDN-KPAISALETMDQVAEIRPGSVIPVVVMRDDK 86

Query: 172 LINLAVTP 179
            + L VT 
Sbjct: 87  QLTLQVTI 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.57
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.55
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	99.53
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	99.45
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.42
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	99.4
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.39
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.38
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	99.3
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.09
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.07
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.06
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.01
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.01
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.01
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.0
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.97
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	98.95
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	98.94
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.94
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	98.9
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	98.87
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	98.87
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.85
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.83
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.83
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.82
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.82
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.82
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.81
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.81
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	98.8
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.8
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	98.8
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.79
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	98.79
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.79
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.79
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	98.77
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.76
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.75
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.74
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.73
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.73
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.7
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	98.69
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.68
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.67
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.67
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.67
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	98.66
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.65
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.64
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.62
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.62
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.61
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	98.61
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.6
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.56
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.52
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.47
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.46
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.06

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.9e-15  Score=101.93  Aligned_cols=68  Identities=28%  Similarity=0.330  Sum_probs=63.1

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      ..+++|.+|.++|||++|||++||+|++|||++  +.+++++...++  .|+++.++|.|+|+..+++++|.
T Consensus        30 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~--V~s~~dl~~~l~--~g~~v~l~v~R~g~~~~~~v~pe   97 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVR--TQSQLAVQIRRGRETLTLYVTPE   97 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHT--TCSSEEEEEEETTEEEEEEECCE
T ss_pred             CCcEEEEEECCCchHhhcCCCCCcEEEEECCEE--cCCHHHHHHHhc--CCCEEEEEEEECCEEEEEEEEee
Confidence            357899999999999999999999999999999  999999999884  67899999999999999999885

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=3.2e-14  Score=96.94  Aligned_cols=71  Identities=27%  Similarity=0.237  Sum_probs=63.3

Q ss_pred             cCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEE-CCEEEEEEEEec
Q 029301          108 RRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR-QGGLINLAVTPR  180 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R-~g~~~~~~l~~~  180 (195)
                      ...+++|.+|.|+|||++|||++||+|++|||.+  +.++.++...+.. .+|+.+.++|.| +|+.+++++++.
T Consensus        14 ~~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--i~~~~~~~~~i~~~~~g~~v~l~v~r~~g~~~~v~vtL~   86 (88)
T d2z9ia1          14 DTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRP--INSADALVAAVRSKAPGATVALTFQDPSGGSRTVQVTLG   86 (88)
T ss_dssp             -CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEEETTTEEEEEEEECE
T ss_pred             CCCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCc--CCcHHHHHHHHHhCCCCCEEEEEEEECCCCEEEEEEEEc
Confidence            3467899999999999999999999999999999  9999999998876 578999999998 678888888763

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.53  E-value=1.1e-14  Score=102.26  Aligned_cols=79  Identities=16%  Similarity=0.187  Sum_probs=68.4

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccCCCceeee
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLG  189 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~~~~~~lG  189 (195)
                      +++|.+|.++|||+++ |++||+|++|||++  +.+|.+|..++.. .+|+.+.|+|.|++...++...|. ..+++.||
T Consensus         4 Gv~V~~V~~~sPA~~~-L~~GD~I~~ing~~--v~~~~~l~~~i~~~~~G~~v~l~v~R~~~~~~l~~~p~-~~~~~~iG   79 (103)
T d2hgaa1           4 GVQIDSVVPGSPASKV-LTPGLVIESINGMP--TSNLTTYSAALKTISVGEVINITTDQGTFHLKTGRNPN-NSSRAYMG   79 (103)
T ss_dssp             CEEEEEECSSSGGGGT-SCTTCEEEEETTEE--CSSHHHHHHHHTTCCTTCEEEEEETTEEEEEECCBCSS-SCCSCBCC
T ss_pred             cEEEEEECCCChHHhc-CCCCCEEEEECCEE--cCCHHHHHHHHhhCCCCCEEEEEEEECCEEEEEEeccC-CCCceEEE
Confidence            7899999999999875 99999999999999  9999999999987 579999999999887776666664 34678899


Q ss_pred             EEEE
Q 029301          190 CHFR  193 (195)
Q Consensus       190 i~l~  193 (195)
                      +.+.
T Consensus        80 i~~~   83 (103)
T d2hgaa1          80 IRTS   83 (103)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8654

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=99.45  E-value=1.7e-13  Score=93.17  Aligned_cols=68  Identities=13%  Similarity=0.067  Sum_probs=63.0

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  178 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~  178 (195)
                      ..+..|..+.++|||++|||++||+|++|||.+  +.+++++..++.. ..++++.++|.|+|+..++++.
T Consensus        18 ~~G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~--v~~~~~~~~~~~~~~~~~~~~l~v~R~g~~~~i~v~   86 (87)
T d2i6va1          18 VLGYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ   86 (87)
T ss_dssp             EEEEEEEECSCHHHHHHTTCCTTCEEEEETTEE--TTCHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEecCCCCCHHHHCCCCCCCEEEEECCEE--eecHHHHHHHHHhhccccccEEEEEECCEEEEEEEE
Confidence            467889999999999999999999999999999  9999999999987 6789999999999999998875

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=6.7e-14  Score=95.38  Aligned_cols=64  Identities=20%  Similarity=0.264  Sum_probs=57.5

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINL  175 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~  175 (195)
                      ..+++|.+|.|+|||+++||++||+|++|||++  +.+++++..++.. .+..+.++|.|+|+.+++
T Consensus        24 ~~Gv~V~~V~~~spA~~aGl~~GDvI~~ing~~--v~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~l   87 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQA--VKNIAELRKVLDS-KPSVLALNIQRGDSTIYL   87 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGGTCCSSCEEEEETTEE--CSSHHHHHHHTTT-CCSCCCEEEESSSCEEEE
T ss_pred             CCeEEEEEECCCCHHHHcCCCCCcEEEEECCEE--cCCHHHHHHHHHh-CCCEEEEEEEECCEEEEE
Confidence            457889999999999999999999999999999  9999999998865 556799999999988764

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=2.7e-14  Score=99.49  Aligned_cols=69  Identities=25%  Similarity=0.390  Sum_probs=58.0

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  180 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~  180 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.++.++...+.. ..|+++.++|.|+|+.+++++++.
T Consensus        26 ~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~   95 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ   95 (99)
T ss_dssp             -CEECCCCCSSSTTTSSSCCTTCEECBSSSSB--CCCSHHHHHHHHHSCTTCEEEECC-----CCCEEEECE
T ss_pred             CccEEEEecCCCCHHHcCCCcceEEEEECCEe--cccHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEe
Confidence            57889999999999999999999999999999  9999999998866 678999999999999988888764

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.39  E-value=2.1e-12  Score=88.50  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=54.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI  173 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~  173 (195)
                      ..++|.+|.++|||++|||++||+|++|||++  +.  +.+++...++..+|..+.|+|.|+|...
T Consensus        19 ~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~--v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~~~   82 (92)
T d1fc6a3          19 KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTA--VKGMSLYDVSDLLQGEADSQVEVVLHAPGAPS   82 (92)
T ss_dssp             SCEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHCBSTTCEEEEEEEETTEEE
T ss_pred             ceEEEEEecCCCChhHHhhHcCCcceecCceE--cCCCCHHHHHHHhhCCCCCEEEEEEEECCCcC
Confidence            35788999999999999999999999999999  55  6788888888788999999999987643

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=3.7e-14  Score=97.85  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=60.5

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAV  177 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l  177 (195)
                      .+++|.+|.++|||+++||++||+|++|||++  +.++.++..++.. .+|+++.++|.|+|+.+++++
T Consensus        27 ~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v   93 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNL   93 (94)
T ss_dssp             CSEECCCCTTCSSSTTTTCCTTCEECBSSSSB--CCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCC
T ss_pred             CCcEEEECCCChhHHHhCCCcccEEEEECCEE--eCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence            47889999999999999999999999999999  9999999999976 578999999999998877654

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.30  E-value=4.3e-12  Score=86.84  Aligned_cols=72  Identities=13%  Similarity=0.113  Sum_probs=61.0

Q ss_pred             cccCCceEEEEEcCC--------ChhhhcCC-CCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC-EEEEE
Q 029301          106 IIRRPFAVIDEITDA--------SPAAEDGL-QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINL  175 (195)
Q Consensus       106 ~~~~~~~~V~~V~~~--------SpA~~aGL-~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g-~~~~~  175 (195)
                      ...-.+.+|..|.++        |||++||| ++||+|++|||++  +.++.++..+|....|+.+.|+|.|.| ..+++
T Consensus         8 ~~~~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~--v~~~~~~~~~l~g~~G~~V~L~i~R~g~~~r~~   85 (91)
T d1k32a1           8 KLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGET--VGAGSNIYRVLSEKAGTSARIRLSGKGGDKRDL   85 (91)
T ss_dssp             EEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEE--CBTTBCHHHHHHTTTTSEEEEEEECSSSCEEEE
T ss_pred             EEECCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEe--ecCcceeEEEEecCCCCEEEEEEEeCCCCEEEE
Confidence            334456788888876        99999999 8999999999999  999999999999999999999999965 45666


Q ss_pred             EEEe
Q 029301          176 AVTP  179 (195)
Q Consensus       176 ~l~~  179 (195)
                      .++.
T Consensus        86 ~V~~   89 (91)
T d1k32a1          86 MIDI   89 (91)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6653

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.7e-10  Score=76.51  Aligned_cols=58  Identities=21%  Similarity=0.259  Sum_probs=51.4

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ..+.+|..|.++|||+++||++||+|++|||++  +.  +.+++...++...+..+.++|.+
T Consensus        24 ~~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          24 DNGIFVQLVQANSPASLVGLRFGDQVLQINGEN--CAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCccEEEEECCEE--eCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            457889999999999999999999999999999  55  57899999988888889988854

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.6e-10  Score=78.49  Aligned_cols=60  Identities=23%  Similarity=0.363  Sum_probs=50.3

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .++++|.+|.++|||+++||++||+|++|||....-.+..++...+++ .+..+.|+|.|+
T Consensus        38 ~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~   97 (97)
T d1x5qa1          38 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVWRE   97 (97)
T ss_dssp             CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEEEC
T ss_pred             CCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHHHHHHhC-CCCEEEEEEEEC
Confidence            456899999999999999999999999999999222346777788866 567999999985

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.9e-10  Score=74.39  Aligned_cols=54  Identities=24%  Similarity=0.300  Sum_probs=47.3

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEE
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ++|..|.++|||+++||++||.|++|||.+  +.+  ..++...++.. +.+++++|.|
T Consensus        20 ~~V~~V~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~v~~~i~~~-~~~v~L~v~R   75 (77)
T d2f5ya1          20 VRVQAVDSGGPAERAGLQQLDTVLQLNERP--VEHWKCVELAHEIRSC-PSEIILLVWR   75 (77)
T ss_dssp             CEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-SSEEEEEEEE
T ss_pred             EEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHCC-CCEEEEEEEE
Confidence            789999999999999999999999999999  664  57888888754 5689999987

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.2e-10  Score=77.07  Aligned_cols=60  Identities=18%  Similarity=0.174  Sum_probs=50.6

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      +++|..|.++|||+++||++||+|++|||.+..-.+.+++...|+.. +..+.|+|.|+++
T Consensus        26 ~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~-~~~v~L~V~R~~r   85 (85)
T d1rgwa_          26 PLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTLQKSKR   85 (85)
T ss_dssp             CCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEEESCCC
T ss_pred             CEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence            37899999999999999999999999999993333678888888764 5689999998763

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=9.4e-10  Score=74.80  Aligned_cols=60  Identities=23%  Similarity=0.240  Sum_probs=50.9

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .++.+|..|.++|||+++||++||+|++|||....-.+..++..+++. .+..+.++|.|+
T Consensus        31 ~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~R~   90 (91)
T d1m5za_          31 EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE-SGNKLDLVISRN   90 (91)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-STTEEEEEEEEC
T ss_pred             CCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEEC
Confidence            357899999999999999999999999999999333457788888875 466899999885

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.9e-10  Score=75.29  Aligned_cols=60  Identities=23%  Similarity=0.251  Sum_probs=51.1

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+.+|..|.|+|||+++| |++||.|++|||.+..-.+.+++..+|++. +..++|+|.|.|
T Consensus        31 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~-~~~v~L~v~R~g   91 (92)
T d1t2ma1          31 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT-SSVVTLEVAKQG   91 (92)
T ss_dssp             CEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSC-CSEEEEEEEECC
T ss_pred             CCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            467899999999999999 999999999999993233678888888764 568999999976

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1e-09  Score=75.57  Aligned_cols=60  Identities=22%  Similarity=0.298  Sum_probs=51.9

Q ss_pred             cCCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          108 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       108 ~~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ...+.+|..|.++|||+++| |++||+|++|||.+  +.  +.+++..+|++. +..++|+|.|+.
T Consensus        35 ~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~--v~~~s~~~a~~~lk~~-~~~v~L~v~R~~   97 (99)
T d1ozia_          35 RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVS--LEGATHKQAVETLRNT-GQVVHLLLEKGQ   97 (99)
T ss_dssp             SCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEE--CSSCCHHHHHHHHHHS-CSEEEEEEECCC
T ss_pred             CCCCEEEEEECCCChHHhcCCCCccCEEEEECCEE--cCCCCHHHHHHHHHCC-CCeEEEEEEeCC
Confidence            34568899999999999999 99999999999999  55  688888888874 568999998864

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=6.1e-10  Score=77.39  Aligned_cols=56  Identities=16%  Similarity=0.311  Sum_probs=48.7

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ...+|..|.++|||++|||++||+|++|||++  +.++  .++...|++. +..++|+|.+
T Consensus        43 ~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~--v~~~~h~evv~~ik~~-~~~v~L~V~~  100 (104)
T d1q3oa_          43 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQG-GNTLMVKVVM  100 (104)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEEcCeE--cCCCCHHHHHHHHHcC-CCeEEEEEEe
Confidence            45789999999999999999999999999999  6654  7888888864 6789998876

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.3e-09  Score=74.12  Aligned_cols=61  Identities=25%  Similarity=0.362  Sum_probs=51.8

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..+.+|..|.|+|||+++| |++||+|++|||.+..-.+.+++..+|+.. +..++++|.|.|
T Consensus        30 ~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~-~~~v~L~v~Rpg   91 (92)
T d2fe5a1          30 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKPG   91 (92)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC-CCEEEEEEECCC
Confidence            3568999999999999999 999999999999993334678888988864 568999999876

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=1.5e-09  Score=73.93  Aligned_cols=60  Identities=25%  Similarity=0.397  Sum_probs=50.7

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .++++|.+|.++|||+++| |++||+|++|||.+..-.+.+++..+|+.. +..+.|+|.|.
T Consensus        30 ~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~L~v~R~   90 (93)
T d1rgra_          30 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-GSIVRLYVMRR   90 (93)
T ss_dssp             CCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT-TTEEEEEEECS
T ss_pred             CCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence            4678899999999999999 999999999999992233578888888764 56899999885

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=1.5e-09  Score=74.05  Aligned_cols=58  Identities=19%  Similarity=0.235  Sum_probs=49.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ++.+|..|.|+|||+++| |++||+|++|||.+..-.+.+++.+.|++. +..++++|.|
T Consensus        35 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~-~~~v~L~V~R   93 (94)
T d1ihja_          35 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA-DFKIELEIQT   93 (94)
T ss_dssp             EEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEe
Confidence            457899999999999998 999999999999993334688899999875 4679999987

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.6e-09  Score=74.20  Aligned_cols=59  Identities=25%  Similarity=0.397  Sum_probs=47.7

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      .++.+|..|.++|||+++| |++||+|++|||.+..-.+.+++...|++. +..++++|+|
T Consensus        35 ~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~-~~~v~L~V~r   94 (96)
T d2fcfa1          35 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA-GNPVVFMVQS   94 (96)
T ss_dssp             ---EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence            4568999999999999998 999999999999993233678888888764 5679998876

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.8e-09  Score=72.39  Aligned_cols=59  Identities=20%  Similarity=0.270  Sum_probs=48.9

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++||++||+|++|||.+..-.+.+++..+++.. +.+++++|.+.
T Consensus        27 ~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~-~~~v~L~v~~~   85 (91)
T d1g9oa_          27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVDP   85 (91)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEECC
T ss_pred             CCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEECC
Confidence            467899999999999999999999999999992223578888888764 56788888753

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.3e-09  Score=74.44  Aligned_cols=59  Identities=15%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .++|..|.|+|||+++||++||+|++|||.+..-.+..++..+|+.. +..+.|+|.|..
T Consensus        31 ~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~V~R~~   89 (94)
T d1vb7a_          31 PIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQS-ASPLRLQLDRSS   89 (94)
T ss_dssp             EEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEECCC
T ss_pred             CEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            36889999999999999999999999999993233567888888764 568999999864

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.2e-09  Score=72.42  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+.+|.+|.++|||+++| |++||.|++|||.+..-.+.+++...|++.. ..++++|.|+
T Consensus        33 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~L~V~R~   92 (94)
T d1wf8a1          33 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-GNVRFVIGRE   92 (94)
T ss_dssp             EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC-SEEEEEEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeC
Confidence            457899999999999999 9999999999999932346888888888654 5899999874

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=3.6e-09  Score=72.87  Aligned_cols=60  Identities=23%  Similarity=0.319  Sum_probs=50.7

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+.+|..|.|+|||+++| |++||+|++|||....-.+.+++..+|++.. ..++|+|.|+.
T Consensus        38 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~-~~v~L~V~r~~   98 (99)
T d1p1da2          38 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE-DLVKLKIRKDE   98 (99)
T ss_dssp             CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCT-TCEEEEEECCC
T ss_pred             CCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            458999999999999999 9999999999999922236889999998764 46999998863

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=5.6e-09  Score=70.72  Aligned_cols=57  Identities=18%  Similarity=0.221  Sum_probs=48.8

Q ss_pred             ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      +.+|..|.|+|||+++| |++||.|++|||.+..-.+.+++..+|++. +..+.++|+|
T Consensus        31 ~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~-~~~v~l~v~~   88 (90)
T d1qava_          31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred             CEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence            57899999999999999 999999999999993334678888888875 4579999876

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=5e-09  Score=72.80  Aligned_cols=57  Identities=23%  Similarity=0.195  Sum_probs=47.5

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      .+++|..|.++|||+++||++||+|++|||++..-.+.+++..+|+..  ..+.++|+|
T Consensus        41 ~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~--~~v~l~V~~   97 (104)
T d1wi2a_          41 LGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA--REISMRVRF   97 (104)
T ss_dssp             CCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHS--SSEEEEEEC
T ss_pred             CCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEE
Confidence            457899999999999999999999999999993333578888988764  357888865

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=2e-09  Score=75.76  Aligned_cols=55  Identities=13%  Similarity=0.183  Sum_probs=48.4

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEE
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ++|..|.++|||+++||++||+|++|||++  +.  +.+++.++|+...+..+.|+|.+
T Consensus        38 v~V~~V~~~spA~~~GL~~GD~Il~INg~~--v~~~~~~ev~~llk~~~~~~v~l~v~~   94 (111)
T d1vaea_          38 VQVHFLDPHCSASLAGAKEGDYIVSIQGVD--CKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             CEECCCCTTSSHHHHHCCTTCEEEEETTEE--CSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             EEEEEEcCCChHHhcccCcccEEEEECCEE--cCCCCHHHHHHHHHcCCCCeEEEEEEC
Confidence            689999999999999999999999999999  65  56899999988777788887754

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.1e-09  Score=69.00  Aligned_cols=55  Identities=22%  Similarity=0.224  Sum_probs=46.2

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      .+|..|.++|||+++||++||+|++|||++..-.+.+++..+|++. +..++|+|.
T Consensus        25 g~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~-~~~v~l~v~   79 (82)
T d1r6ja_          25 GKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTS-GTVVTITIM   79 (82)
T ss_dssp             TEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEE
T ss_pred             EEEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcC-CCEEEEEEE
Confidence            4689999999999999999999999999993334578888888864 567888775

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=7.7e-09  Score=72.48  Aligned_cols=61  Identities=21%  Similarity=0.291  Sum_probs=46.8

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .++.+|.+|.++|||+++| |++||.|++|||+...-.+.+++..+|+...+....+.+.|.
T Consensus        25 ~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~l~~~~   86 (112)
T d1qaua_          25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG   86 (112)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEEC
T ss_pred             CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEEEEEeC
Confidence            3568999999999999999 999999999999993233678999999875543332233443

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.1e-09  Score=72.45  Aligned_cols=61  Identities=18%  Similarity=0.315  Sum_probs=50.9

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..+++|..|.|+|||+++| |++||+|++|||++..-.+.+++..+|+.. +..+.|+|.|..
T Consensus        37 ~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l~v~R~~   98 (105)
T d1whaa_          37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLEREA   98 (105)
T ss_dssp             CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred             CCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcC-CCeEEEEEEECC
Confidence            3457899999999999998 999999999999993334678888888764 457999998864

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.4e-08  Score=67.99  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCC-CCeEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ-GNAVPVVI  166 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~-g~~v~l~V  166 (195)
                      .++++|..|.|+|||+++| |++||+|++|||+...-.+.+++..+|++.. ...+.+.|
T Consensus        25 ~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V   84 (85)
T d1x45a1          25 LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI   84 (85)
T ss_dssp             SCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            4568999999999999999 9999999999999943446889999998743 44566654

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.1e-08  Score=71.35  Aligned_cols=60  Identities=18%  Similarity=0.357  Sum_probs=49.6

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .++++|..|.|+|||+++| |++||+|++|||++..-.+.+++..+|+.. +..+.++|.|.
T Consensus        40 ~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~-~~~v~l~v~r~  100 (107)
T d1uhpa_          40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA-KEPIVVQVLRR  100 (107)
T ss_dssp             SCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEEC
Confidence            4567899999999999999 999999999999992233578888888875 45788888774

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=1.2e-08  Score=70.65  Aligned_cols=60  Identities=25%  Similarity=0.313  Sum_probs=50.8

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .++++|..|.++|||+++| |++||.|++|||....-.+.+++..+|+.. +..+++.|.|+
T Consensus        32 ~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~L~v~~~   92 (102)
T d1tp5a1          32 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYK   92 (102)
T ss_dssp             GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEEC
T ss_pred             CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            3578999999999999998 999999999999994344678999999864 56889988774

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=3.1e-09  Score=76.48  Aligned_cols=62  Identities=23%  Similarity=0.311  Sum_probs=53.0

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g  170 (195)
                      .++++|..|.|+|||+++| |++||+|++|||....-.+.+++.++|+.. .|..++|+|.|+.
T Consensus        48 ~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~~  111 (126)
T d1wifa_          48 GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGF  111 (126)
T ss_dssp             TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSS
T ss_pred             CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeCC
Confidence            3568899999999999999 999999999999993234688999999874 5789999999864

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.3e-08  Score=71.31  Aligned_cols=61  Identities=26%  Similarity=0.331  Sum_probs=50.7

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .++++|..|.++|||+++| |++||+|++|||....-.+.+++..+|+.. +..+.|+|.|..
T Consensus        35 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~-~~~v~l~v~r~~   96 (110)
T d1um1a_          35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKSD   96 (110)
T ss_dssp             CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            4568899999999999999 999999999999992233678999998865 468899888753

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=7.1e-09  Score=70.98  Aligned_cols=59  Identities=19%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhC---CCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN---QGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~---~g~~v~l~V~R  168 (195)
                      ++++|..|.++|||+++| |++||.|++|||+...-.+.+++.++|+..   .+.++.+.+.|
T Consensus        34 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          34 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             CCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            567899999999999999 999999999999993334688999988863   46678888765

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=1.3e-08  Score=69.42  Aligned_cols=60  Identities=20%  Similarity=0.302  Sum_probs=50.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.++|||+++| |++||+|++|||....-.+.+++...|++. +..+.++|.|..
T Consensus        28 ~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l~v~r~~   88 (95)
T d1n7ea_          28 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA-GETVTLKIKKQT   88 (95)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            347999999999999999 999999999999993333678888888864 568999998864

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.1e-08  Score=67.65  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      .+|..|.|+|||+++||++||+|++|||.+..-.+.+++.+.|+... ..+.+++.
T Consensus        22 g~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~~v~l~vi   76 (79)
T d1y7na1          22 GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTM   76 (79)
T ss_dssp             TEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCC-EEEEEEEE
T ss_pred             CEEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCC-CEEEEEEE
Confidence            47999999999999999999999999999933335789999998754 46777663

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.79  E-value=1.2e-08  Score=69.99  Aligned_cols=58  Identities=17%  Similarity=0.304  Sum_probs=48.2

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ++.+|..|.|+|||+++| |++||+|++|||.+..-.+.+++..+|+... ..+.++|..
T Consensus        38 ~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~v~p   96 (98)
T d1rzxa_          38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANS-SNLIITVKP   96 (98)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTC-TEEEEEEEC
T ss_pred             CCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCC-CeEEEEEEe
Confidence            567899999999999999 9999999999999932346789999998653 578887753

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.1e-09  Score=74.23  Aligned_cols=59  Identities=25%  Similarity=0.299  Sum_probs=51.5

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      ..+++|..|.|+|||++.| |++||.|++|||..  +.++.+....+....+..+.+.|.|.
T Consensus        47 ~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~--v~~~~~~~~~l~~~~~~~v~l~v~r~  106 (124)
T d1wh1a_          47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE--VQNREEAVALLTSEENKNFSLLIARP  106 (124)
T ss_dssp             CCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCB--CCSHHHHHHHHTCSSCCSCCEEEEEC
T ss_pred             CCCEEEEEECCCChhhhhcccCCCCEEEEECCEE--CCCHHHHHHHHhhCCCCcEEEEEEeC
Confidence            3568899999999999988 99999999999999  99999988887766667788888774

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=9.3e-09  Score=71.90  Aligned_cols=59  Identities=22%  Similarity=0.213  Sum_probs=49.9

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R  168 (195)
                      ++.+|..|.++|||+++| |++||+|++|||.+..-.+.+++...|+.. .+..+.+.|.|
T Consensus        47 ~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          47 LGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             EEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             cCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            468999999999999998 999999999999993334688999998864 45678998877

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.77  E-value=1.8e-08  Score=68.38  Aligned_cols=60  Identities=15%  Similarity=0.194  Sum_probs=48.5

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhC--CCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN--QGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~--~g~~v~l~V~R~  169 (195)
                      .+.+|.+|.|+|||++.| |++||+|++|||.+..-.+.+++.+.|+..  ....+.++|.|.
T Consensus        29 ~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          29 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             CCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            467899999999999999 999999999999993333578888888652  234688888873

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.8e-09  Score=73.27  Aligned_cols=62  Identities=18%  Similarity=0.219  Sum_probs=50.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL  172 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~  172 (195)
                      .+++|..|.++|||+++||++||+|++|||.+..-.+..++..+|+. .+..+.|+|.|+...
T Consensus        42 ~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~p~~  103 (117)
T d1uita_          42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQ-QCDTITILAQYNPHV  103 (117)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTS-CCSEEEEEECCCSCC
T ss_pred             CCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHC-CCCeEEEEEEECCcc
Confidence            46899999999999999999999999999999223356788888765 467899998876543

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.5e-08  Score=71.81  Aligned_cols=59  Identities=19%  Similarity=0.203  Sum_probs=49.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++| |++||+|++|||.+..-.+.+++..+|++.. ..+.|+|.|.
T Consensus        49 ~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~-~~v~l~v~r~  108 (117)
T d1ujda_          49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEICVRLD  108 (117)
T ss_dssp             EEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCS-SCEEEEEESS
T ss_pred             cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC-CeEEEEEEEC
Confidence            357899999999999999 9999999999999933346889888888654 4689999875

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.8e-08  Score=72.51  Aligned_cols=59  Identities=19%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      +++|..|.+++||+++||++||+|++|||+...-.+.+++.++|+..  ..+.++|.+.+.
T Consensus        47 gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr~~--~~v~l~v~~~~~  105 (128)
T d1uf1a_          47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS--RHLILTVKDVGR  105 (128)
T ss_dssp             CCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC--SEEEEEEECCSC
T ss_pred             CEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--CcEEEEEEECCc
Confidence            57899999999999999999999999999992233578888888753  468888877654

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.9e-08  Score=70.86  Aligned_cols=60  Identities=22%  Similarity=0.327  Sum_probs=51.3

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~  169 (195)
                      .+++|..|.+++||+++| |++||+|++|||+...-.+.+++..+|+.. .+..+.|+|.|.
T Consensus        44 ~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~  105 (123)
T d1ueqa_          44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG  105 (123)
T ss_dssp             CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred             CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcC
Confidence            457899999999999998 999999999999992223578999999875 478899999885

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.1e-08  Score=70.80  Aligned_cols=60  Identities=15%  Similarity=0.238  Sum_probs=49.3

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~  169 (195)
                      .+++|..|.+++||+++| |++||+|++|||+...-.+.+++..+|+.. .+..+.++|.|.
T Consensus        34 ~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~   95 (103)
T d1uepa_          34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK   95 (103)
T ss_dssp             SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeC
Confidence            347899999999999998 999999999999993334578888988864 345788888874

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.6e-08  Score=68.03  Aligned_cols=58  Identities=16%  Similarity=0.342  Sum_probs=47.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      .+.+|..|.++|||+++| |++||.|++|||.+..-.+.+++..++++.. .+++|+|..
T Consensus        25 ~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~~v~L~i~p   83 (88)
T d1kwaa_          25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-GSITFKIVP   83 (88)
T ss_dssp             GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-EEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEe
Confidence            457899999999999999 9999999999999922346888999998754 467777653

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.4e-08  Score=70.43  Aligned_cols=60  Identities=25%  Similarity=0.289  Sum_probs=49.4

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..+.+|..|.++|||+ +||++||.|++|||++..-.+.+++.++|++. +..+.++|.|.+
T Consensus        38 ~~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~-~~~v~l~V~R~~   97 (104)
T d2csja1          38 ETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS-GKIAAIVVKRPR   97 (104)
T ss_dssp             CCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS-CSEEEEEEEEEE
T ss_pred             CCCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCC
Confidence            3568999999999997 78999999999999992223678899999875 468999998853

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.1e-08  Score=67.96  Aligned_cols=59  Identities=17%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .++.+|..|.|+|||+++ |++||+|++|||.+..-.+..++...|+.. +..+.|.|.|.
T Consensus        42 ~~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t~~eav~~l~~~-~~~v~L~V~R~  100 (103)
T d2h3la1          42 DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVRE  100 (103)
T ss_dssp             CCSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHHHC-CSEEEEEEEEE
T ss_pred             CCCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEEE
Confidence            366899999999999987 999999999999993233578888888875 45899999874

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.2e-08  Score=70.37  Aligned_cols=60  Identities=23%  Similarity=0.242  Sum_probs=49.4

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..++|..|.|+|||+++| |++||+|++|||.+..-.+.+++.++|++. +..++|+|.|..
T Consensus        43 ~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~-~~~v~l~V~r~~  103 (114)
T d1uewa_          43 VPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDA-GLSVTLRIIPQE  103 (114)
T ss_dssp             CSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHT-TTEEEEEECCCS
T ss_pred             CCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            447899999999999998 999999999999992233568999999864 457999888753

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.7e-09  Score=72.92  Aligned_cols=61  Identities=16%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      ..+++|..|.|+|||+++| |++||+|++|||+...-.+.+++..+|+. .+..++|+|.|..
T Consensus        43 ~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~-~~~~v~L~V~r~~  104 (111)
T d1ujua_          43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTVLVCDGF  104 (111)
T ss_dssp             CCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEECCCCCC
T ss_pred             CCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            4668999999999999999 99999999999999223357888888875 4568898887753

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.9e-08  Score=69.72  Aligned_cols=60  Identities=15%  Similarity=0.208  Sum_probs=50.2

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  171 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~  171 (195)
                      .++|..|.+++||++++|++||+|++|||++..-.+.+++.++|+.. +..+.|+|.|...
T Consensus        30 ~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~-~~~v~L~v~R~~~   89 (103)
T d1wf7a_          30 PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRASA   89 (103)
T ss_dssp             EEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCCSC
T ss_pred             CEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCC
Confidence            47888999999999999999999999999993234678888888774 6789999988654

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2e-08  Score=72.26  Aligned_cols=60  Identities=18%  Similarity=0.188  Sum_probs=51.0

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~  169 (195)
                      .+++|..|.+++||+++| |++||+|++|||....-.+.+++..+|+...+..+.++|.|.
T Consensus        57 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~  117 (130)
T d1i16a_          57 KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK  117 (130)
T ss_dssp             CCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred             CCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcC
Confidence            457899999999999999 999999999999993334688999999876666889998874

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.1e-08  Score=70.99  Aligned_cols=59  Identities=22%  Similarity=0.137  Sum_probs=49.0

Q ss_pred             ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .++|..|.+++||+++||++||+|++|||+...-.+..++..+|+. .+..+.|+|.|.+
T Consensus        30 ~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~-~~~~v~l~V~R~~   88 (103)
T d1v5la_          30 PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKA-ASYQLCLKIDRAE   88 (103)
T ss_dssp             EEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTT-CCSEEECEECCCT
T ss_pred             CEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence            4778899999999999999999999999999333346688888876 4568999999865

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.5e-08  Score=65.29  Aligned_cols=57  Identities=19%  Similarity=0.266  Sum_probs=47.1

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      .+.+|..|.++|||+++| |++||.|++|||.+..-.+.+++.++|++. +..++++|.
T Consensus        30 ~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~-~~~v~L~Vl   87 (88)
T d2fnea1          30 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KGTVTLMVL   87 (88)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEE
T ss_pred             cCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEE
Confidence            457899999999999998 999999999999993333678999999875 456787764

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.6e-08  Score=68.75  Aligned_cols=58  Identities=21%  Similarity=0.333  Sum_probs=46.0

Q ss_pred             CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      .++++|..|.++|||+++||++||.|++|||++..-.+.+++.++|+...  .+.++|.+
T Consensus        33 ~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~--~~~l~v~~   90 (101)
T d1x5na1          33 KPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR--SLTISIVA   90 (101)
T ss_dssp             SCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCS--SEEEEECS
T ss_pred             CCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhCCC--CEEEEEEE
Confidence            35789999999999999999999999999999932334678888887753  35555544

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.6e-08  Score=69.81  Aligned_cols=57  Identities=16%  Similarity=0.225  Sum_probs=46.8

Q ss_pred             CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .+++|..|.+++||+++||++||+|++|||++  +.  +..++..+|+...  .+.++|.|.+
T Consensus        35 ~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~--v~~~~~~~v~~ll~~~~--~~~l~V~~~~   93 (101)
T d1ueza_          35 VGIYVSLVEPGSLAEKEGLRVGDQILRVNDKS--LARVTHAEAVKALKGSK--KLVLSVYSAG   93 (101)
T ss_dssp             CCEEEEEECTTSHHHHHTCCSSCCEEEETTEE--CSSCCHHHHHHHSSSSS--SCCEEECCCC
T ss_pred             CCEEEEEECCCChHHhcCCCCCcEEEEECCEE--CCCCCHHHHHHHHhcCC--CEEEEEEECC
Confidence            35789999999999999999999999999999  55  5688888887643  3567777654

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.3e-08  Score=67.72  Aligned_cols=60  Identities=17%  Similarity=0.231  Sum_probs=46.7

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  168 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R  168 (195)
                      ..+++|..|.++|||+++| |++||.|++|||....-.+.+++...|+...+....+.+.|
T Consensus        34 ~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~~r   94 (107)
T d1x6da1          34 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTR   94 (107)
T ss_dssp             CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEEEC
Confidence            3568999999999999998 99999999999999323367899999987654433333334

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4e-08  Score=67.50  Aligned_cols=59  Identities=25%  Similarity=0.291  Sum_probs=48.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R  168 (195)
                      .+++|..+.++|||+++| |++||.|++|||.+..-.+.+++.++|++ .....+.|.+..
T Consensus        38 ~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~v~~   98 (99)
T d1x5ra1          38 SPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEVEF   98 (99)
T ss_dssp             SCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEc
Confidence            457999999999999998 99999999999999334468899999986 355667777654

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=9.7e-08  Score=65.65  Aligned_cols=58  Identities=21%  Similarity=0.333  Sum_probs=47.6

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  167 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~  167 (195)
                      ..+++|..|.++|||+++| |++||.|++|||.+..-.+.+++.++|++..+ +++++|.
T Consensus        40 ~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~-~v~L~v~   98 (100)
T d1va8a1          40 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHG-TLTFVLI   98 (100)
T ss_dssp             SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCE-EEEEEEE
T ss_pred             CCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCC-eEEEEEE
Confidence            3468999999999999999 99999999999999323368899999987653 6777653

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.6e-08  Score=69.11  Aligned_cols=61  Identities=21%  Similarity=0.220  Sum_probs=50.9

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      .++++|..|.|+++|+++| |++||+|++|||.+..-.+++++..+|++ .+..+.|+|.|..
T Consensus        41 ~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~-~~~~v~l~v~~~~  102 (117)
T d1v62a_          41 KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS-ISEKVRLEILPVP  102 (117)
T ss_dssp             SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS-CSSEEEEEECCBT
T ss_pred             CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHc-CCCcEEEEEEECC
Confidence            4678999999999999998 99999999999999333468899999886 4567888887643

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.3e-08  Score=66.62  Aligned_cols=60  Identities=12%  Similarity=0.193  Sum_probs=47.3

Q ss_pred             CceEEEEEcCCChhhhc--CCCCCCEEEEECCeeCCCCcHHHHHHHHhh---CCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAED--GLQLGDQVLKFGTVEAGDNLLERLAAEGRK---NQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~a--GL~~GD~I~~ing~~~~v~~~~~l~~~l~~---~~g~~v~l~V~R~  169 (195)
                      .+++|..|.++|||+++  ||++||.|++|||.+..-.+.+++..+|+.   .....+.++|.++
T Consensus        34 ~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          34 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN   98 (106)
T ss_dssp             EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred             CCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCC
Confidence            34789999999999987  899999999999999333457888888875   2344677777664

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.1e-07  Score=67.42  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=49.6

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhh---CCCCeEEEEEEEC
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRK---NQGNAVPVVIMRQ  169 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~---~~g~~v~l~V~R~  169 (195)
                      ..++|..|.|+|||++.| |++||+|++|||.+..-.+.+++..+|+.   ..+..+++.|.|.
T Consensus        43 ~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~  106 (118)
T d1v6ba_          43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeC
Confidence            357899999999999998 99999999999999323357888888875   3467899998874

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4.1e-08  Score=67.95  Aligned_cols=59  Identities=19%  Similarity=0.324  Sum_probs=49.5

Q ss_pred             ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301          111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  170 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g  170 (195)
                      +++|..|.+++||+++| |++||.|++|||....-.+..++.++|+.. +..+.++|.|..
T Consensus        37 ~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~-~~~v~l~v~R~~   96 (103)
T d1wfva_          37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG-GRRVRLLLKRGT   96 (103)
T ss_dssp             EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHH-CSEECEEEECTT
T ss_pred             CEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcC-CCEEEEEEEECC
Confidence            57889999999999998 999999999999993334578888988764 568999998853

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=1.7e-07  Score=66.68  Aligned_cols=59  Identities=27%  Similarity=0.328  Sum_probs=46.3

Q ss_pred             CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEE
Q 029301          110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMR  168 (195)
Q Consensus       110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R  168 (195)
                      ..++|..|.|++||+++| |++||+|++|||.+..-.+++++.++|+.. ....+.|.+.|
T Consensus        45 ~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~~~  105 (122)
T d1v5qa_          45 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF  105 (122)
T ss_dssp             SCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             CCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEEEEEec
Confidence            447899999999999998 899999999999993334588999999874 33455555443

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.9e-07  Score=64.49  Aligned_cols=60  Identities=15%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhC----CCCeEEEEEEE
Q 029301          109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN----QGNAVPVVIMR  168 (195)
Q Consensus       109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~----~g~~v~l~V~R  168 (195)
                      .++++|..|.|++||+++| |++||+|++|||.+..-.+.+++..+|+..    ....+.+.|.+
T Consensus        31 ~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v~~   95 (103)
T d1ufxa_          31 QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE   95 (103)
T ss_dssp             CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECC
T ss_pred             CCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEEeC
Confidence            4568899999999999998 999999999999993334688888888763    22355555543

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.1e-07  Score=68.12  Aligned_cols=59  Identities=20%  Similarity=0.255  Sum_probs=48.5

Q ss_pred             ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhC------CCCeEEEEEEEC
Q 029301          111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN------QGNAVPVVIMRQ  169 (195)
Q Consensus       111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~------~g~~v~l~V~R~  169 (195)
                      +++|..|.|++||+++| |++||+|++|||+...-.+.+++.+.|+..      ...++++.|.|.
T Consensus        56 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~  121 (127)
T d1wg6a_          56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR  121 (127)
T ss_dssp             EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             CEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeC
Confidence            57899999999999998 999999999999993234678888888753      246899999884

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.2e-06  Score=55.76  Aligned_cols=50  Identities=14%  Similarity=0.156  Sum_probs=40.7

Q ss_pred             CChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEEC
Q 029301          120 ASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQ  169 (195)
Q Consensus       120 ~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~  169 (195)
                      .+++..+||++||+|++|||++..-.+.+++.++|++. .+..++++|.|.
T Consensus        40 ~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~   90 (96)
T d1ujva_          40 LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            35666689999999999999993334688999999874 578999999885