Citrus Sinensis ID: 029310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MASLQASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSVLSLDEFYMLTMWMI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEHHHHHHHccccccccccccccccccccccEEEcccccccHHHHHHHHHHcccccccccccEEEEEccccEEEEcEEEEcccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccEEcccccccccccccccEEEcccccccHHccEEEEHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHEEcccccccEEEEHHHHHHHHHccccccccccccccccEEEEEEcccccHHHHHHHHHHHHcccHHHcccccEEEEEcccccEEEEEEEEccHccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
maslqaslpsisaiwssfpdsssinsasivtltsspandrRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVagkttnmqqidvneritglerlnptprpttspflegrwnfewfgsgspgfFVARFIferfpptlanlsnmdVVIKDGKANITANFKLLNSVLSLDEFYMLTMWMI
Flexible Loop (DISEMBL)
maslqaslPSISAIWSSFPDSSSINSASivtltsspandrRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVagkttnmqqidvneritglerlnptprpttspFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSVLSLDEFYMLTMWMI
Low Complexity Region (SEG)
MASLQASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSVLSLDEFYMLTMWMI
Disordered region (IsUnstruct)
*********************************************LRCKAMVQQAVQ*****Y*********KESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGL************PFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSVLSLDEFYMLTMWM*
Disordered Region (DISOPRED)
**********************************************RCKAMVQ****G*****AKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSVLSLDEFYMLTMWM*
Disordered Region (DISEMBL)
********PSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSVLSLDEFYMLTMWMI
Disordered Region (DISPRO)
******************PDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSVLSLDEFYMLTMWMI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASLQASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSVLSLDEFYMLTMWMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q8S9M1	299	Probable plastid-lipid-as	yes	no	0.933	0.608	0.644	5e-61
Q9M2P7	308	Probable plastid-lipid-as	no	no	0.707	0.448	0.710	4e-56

>sp|Q8S9M1|PAP13_ARATH Probable plastid-lipid-associated protein 13, chloroplastic OS=Arabidopsis thaliana GN=PAP13 PE=1 SV=2

 Score =  233 bits (594), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 134/183 (73%), Gaps = 1/183 (0%)

Query: 1   MASLQASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAP 60
           MA +  S+P  SA+   F  S+S +   +             RRR+  +AMVQ+ VQG+P
Sbjct: 1   MALIHGSVPGTSAVRLVFSTSASPSRFCLNVPVVKQGWKNSCRRRV-LRAMVQETVQGSP 59

Query: 61  AAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTT 120
             YA+EMERLSAKESLLLA KDAGGFEALV GKTTNMQ+IDVNERIT LERLNPTPRPTT
Sbjct: 60  LVYAREMERLSAKESLLLALKDAGGFEALVTGKTTNMQRIDVNERITSLERLNPTPRPTT 119

Query: 121 SPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNS 180
           SP  EGRWNFEWFGSGSPG   AR IFERFP TLANLS M+++IKD  A  TAN KLLNS
Sbjct: 120 SPCFEGRWNFEWFGSGSPGLLAARVIFERFPSTLANLSRMEILIKDANAKATANIKLLNS 179

Query: 181 VLS 183
           + S
Sbjct: 180 IES 182

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2P7|PAP9_ARATH Probable plastid-lipid-associated protein 9, chloroplastic OS=Arabidopsis thaliana GN=PAP9 PE=1 SV=1

 Score =  217 bits (552), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 98/138 (71%), Positives = 114/138 (82%)

Query: 44  RRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVN 103
           RR+ C+AMVQ +VQG P+ YA+EMERLSAKESL+LAF DAGGFEALV GK T+MQ+IDVN
Sbjct: 48  RRMICRAMVQDSVQGIPSVYAREMERLSAKESLILAFNDAGGFEALVTGKITDMQKIDVN 107

Query: 104 ERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVV 163
           ERIT LERLNPTPRPTTSP+LEGRW+FEWFG  +PG    R +FERFP TL +LSNM++ 
Sbjct: 108 ERITNLERLNPTPRPTTSPYLEGRWSFEWFGVNTPGSLAVRVMFERFPSTLVSLSNMEIF 167

Query: 164 IKDGKANITANFKLLNSV 181
           IKD     TAN KLLNS+
Sbjct: 168 IKDNNTKATANIKLLNSI 185

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
363901076	219	putative plastid-lipid-associated protei	0.933	0.831	0.718	1e-67
118488681	311	unknown [Populus trichocarpa]	0.892	0.559	0.713	4e-66
255579735	297	conserved hypothetical protein [Ricinus	0.912	0.599	0.697	3e-64
356500445	299	PREDICTED: probable plastid-lipid-associ	0.733	0.478	0.839	4e-64
363807353	310	uncharacterized protein LOC100779837 [Gl	0.707	0.445	0.862	6e-64
395146484	184	putative RE-encoding protein [Linum usit	0.733	0.777	0.797	1e-63
255644645	299	unknown [Glycine max]	0.733	0.478	0.832	2e-63
255634300	193	unknown [Glycine max]	0.733	0.740	0.832	2e-63
224137846	257	predicted protein [Populus trichocarpa]	0.707	0.536	0.812	1e-60
373431037	314	plastid lipid-associated protein [Vitis	0.933	0.579	0.634	5e-60

>gi|363901076|gb|AEW43292.1| putative plastid-lipid-associated protein, partial [Hevea brasiliensis]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/185 (71%), Positives = 153/185 (82%), Gaps = 3/185 (1%)

Query: 1   MASLQASLPSISAIWSSFPDS-SSIN-SASIVTLTSSPANDRRIRRRLRCKAMVQQAVQG 58
           MA++ +SLP+ SAI S +  S +SI+ +AS+V+    P   RR  R++   AMVQQAVQG
Sbjct: 1   MAAMHSSLPANSAIGSRYSSSFTSIHATASLVSFPRLP-ETRRSNRKIAVTAMVQQAVQG 59

Query: 59  APAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRP 118
           APAAYAKEMERLSAKESLLLAFKD+GGFEALV GKTT++Q+IDVNERITGLERLNPTPRP
Sbjct: 60  APAAYAKEMERLSAKESLLLAFKDSGGFEALVTGKTTDLQRIDVNERITGLERLNPTPRP 119

Query: 119 TTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLL 178
           TTSPFLEGRWNFEWFGSGSPG F ARFI ERFP  LANLS MDV+IKD  A ITA+ KLL
Sbjct: 120 TTSPFLEGRWNFEWFGSGSPGIFAARFILERFPSNLANLSKMDVLIKDSNAKITASMKLL 179

Query: 179 NSVLS 183
           +S+ S
Sbjct: 180 SSIES 184

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488681|gb|ABK96151.1| unknown [Populus trichocarpa]

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 132/185 (71%), Positives = 145/185 (78%), Gaps = 11/185 (5%)

Query: 6   ASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRR------IRRRLRCKAMVQQAVQG- 58
            SLP ISA+ S      S +  S  +LT  P N RR      IRRR+ C AMVQQAVQG 
Sbjct: 13  CSLPPISALRSRL----SPSLCSFQSLTKLPENCRRSSDYRGIRRRMTCTAMVQQAVQGG 68

Query: 59  APAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRP 118
           +PA YAKEMERL+AKESLLLAFKD+GGFEALV GKTT+MQ+IDVNERITGLERLNPTPRP
Sbjct: 69  SPATYAKEMERLAAKESLLLAFKDSGGFEALVTGKTTDMQRIDVNERITGLERLNPTPRP 128

Query: 119 TTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLL 178
           TTSPFLEGRWNFEWFG+GSPG   ARFIFERFP  LANLS MDVVIKDG A +TA+ KLL
Sbjct: 129 TTSPFLEGRWNFEWFGAGSPGLSAARFIFERFPSNLANLSKMDVVIKDGNAKVTAHMKLL 188

Query: 179 NSVLS 183
            S+ S
Sbjct: 189 YSIES 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579735|ref|XP_002530706.1| conserved hypothetical protein [Ricinus communis] gi|223529720|gb|EEF31660.1| conserved hypothetical protein [Ricinus communis]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 146/185 (78%), Gaps = 7/185 (3%)

Query: 1   MASLQASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQA--VQG 58
           MAS+Q SL +I+  W S P  +S N+ +  +L S P   R   R++ CKAMVQ+A  VQG
Sbjct: 1   MASVQTSLSAIT--WRSSPSFTSANATT--SLVSFPRFTRE-NRKMTCKAMVQEAAAVQG 55

Query: 59  APAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRP 118
           APA YAK MERLSAKESLLLAFKD+GGFEALV GK T MQ+IDVNERI GLERLNPTPRP
Sbjct: 56  APATYAKAMERLSAKESLLLAFKDSGGFEALVTGKVTEMQRIDVNERIIGLERLNPTPRP 115

Query: 119 TTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLL 178
           TTSPFLEGRWNFEWFGSGSPG   ARF+FERFP +LANLS MDVVIKDG A +TA  KLL
Sbjct: 116 TTSPFLEGRWNFEWFGSGSPGLLAARFLFERFPSSLANLSKMDVVIKDGNAKVTAIMKLL 175

Query: 179 NSVLS 183
           +S+ S
Sbjct: 176 SSIES 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500445|ref|XP_003519042.1| PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic-like [Glycine max]

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 120/143 (83%), Positives = 127/143 (88%)

Query: 39  DRRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQ 98
            R   +R  C+AMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALV+GKTT  Q
Sbjct: 37  QRGSNKRSGCRAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVSGKTTEWQ 96

Query: 99  QIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLS 158
           +IDVNERITGLERLNPTPRPTTSPFLEG+WNFEWFGSGSPG F ARFIFE FP TLANLS
Sbjct: 97  KIDVNERITGLERLNPTPRPTTSPFLEGQWNFEWFGSGSPGLFAARFIFEIFPSTLANLS 156

Query: 159 NMDVVIKDGKANITANFKLLNSV 181
            MDVVIKDG A ITAN +LLNS+
Sbjct: 157 KMDVVIKDGNAKITANMRLLNSI 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807353|ref|NP_001242119.1| uncharacterized protein LOC100779837 [Glycine max] gi|255641773|gb|ACU21156.1| unknown [Glycine max]

 Score =  248 bits (634), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 119/138 (86%), Positives = 125/138 (90%)

Query: 44  RRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVN 103
           +R  C+AMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALV+GKTT  Q+IDVN
Sbjct: 53  KRWGCRAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVSGKTTEWQKIDVN 112

Query: 104 ERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVV 163
           ERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPG F ARFIFE FP TLANLS MD V
Sbjct: 113 ERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGLFAARFIFETFPSTLANLSKMDFV 172

Query: 164 IKDGKANITANFKLLNSV 181
           IKDG A ITAN +LLNS+
Sbjct: 173 IKDGNAKITANMRLLNSI 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146484|gb|AFN53640.1| putative RE-encoding protein [Linum usitatissimum]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/143 (79%), Positives = 127/143 (88%)

Query: 40  RRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQ 99
           +++R R+ C+AMVQQ VQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALV GKTT +Q+
Sbjct: 41  QKVRLRMSCRAMVQQTVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVTGKTTEVQK 100

Query: 100 IDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSN 159
           IDVNERITGLERLNPTPRPTTSP+LEGRWNFEWFG+GSPG F A+ +F+RFP  LANLSN
Sbjct: 101 IDVNERITGLERLNPTPRPTTSPYLEGRWNFEWFGAGSPGLFAAKLLFQRFPSDLANLSN 160

Query: 160 MDVVIKDGKANITANFKLLNSVL 182
           MDVVIK+GKA  TAN KL  SV 
Sbjct: 161 MDVVIKEGKAKATANMKLFYSVF 183

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644645|gb|ACU22825.1| unknown [Glycine max]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/143 (83%), Positives = 126/143 (88%)

Query: 39  DRRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQ 98
            R   +R  C+AMVQQAVQGAPAAYAKEMERLSAKESL LAFKDAGGFEALV+GKTT  Q
Sbjct: 37  QRGSNKRSGCRAMVQQAVQGAPAAYAKEMERLSAKESLFLAFKDAGGFEALVSGKTTEWQ 96

Query: 99  QIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLS 158
           +IDVNERITGLERLNPTPRPTTSPFLEG+WNFEWFGSGSPG F ARFIFE FP TLANLS
Sbjct: 97  KIDVNERITGLERLNPTPRPTTSPFLEGQWNFEWFGSGSPGLFAARFIFEIFPSTLANLS 156

Query: 159 NMDVVIKDGKANITANFKLLNSV 181
            MDVVIKDG A ITAN +LLNS+
Sbjct: 157 KMDVVIKDGNAKITANMRLLNSI 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634300|gb|ACU17514.1| unknown [Glycine max]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/143 (83%), Positives = 126/143 (88%)

Query: 39  DRRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQ 98
            R   +R  C+AMVQQAVQGAPAAYAKEMERLSAKESL LAFKDAGGFEALV+GKTT  Q
Sbjct: 37  QRGSNKRSGCRAMVQQAVQGAPAAYAKEMERLSAKESLFLAFKDAGGFEALVSGKTTEWQ 96

Query: 99  QIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLS 158
           +IDVNERITGLERLNPTPRPTTSPFLEG+WNFEWFGSGSPG F ARFIFE FP TLANLS
Sbjct: 97  KIDVNERITGLERLNPTPRPTTSPFLEGQWNFEWFGSGSPGLFAARFIFEIFPSTLANLS 156

Query: 159 NMDVVIKDGKANITANFKLLNSV 181
            MDVVIKDG A ITAN +LLNS+
Sbjct: 157 KMDVVIKDGNAKITANMRLLNSI 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137846|ref|XP_002322666.1| predicted protein [Populus trichocarpa] gi|222867296|gb|EEF04427.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 123/139 (88%), Gaps = 1/139 (0%)

Query: 46  LRCKAMVQQAVQG-APAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNE 104
           + C AMVQQAVQG +PA YAKEMERL+AKESLLLAFKD+GGFEALV GKTT+MQ+IDVNE
Sbjct: 1   MTCTAMVQQAVQGGSPATYAKEMERLAAKESLLLAFKDSGGFEALVTGKTTDMQRIDVNE 60

Query: 105 RITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVI 164
           RITGLERLNPTPRPTTSPFLEGRWNFEWFG+GSPG   ARFIFERFP  LANLS MDVVI
Sbjct: 61  RITGLERLNPTPRPTTSPFLEGRWNFEWFGAGSPGLSAARFIFERFPSNLANLSKMDVVI 120

Query: 165 KDGKANITANFKLLNSVLS 183
           KDG A +TA+ KLL S+ S
Sbjct: 121 KDGNAKVTAHMKLLYSIES 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373431037|gb|AEY70471.1| plastid lipid-associated protein [Vitis pseudoreticulata]

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 144/197 (73%), Gaps = 15/197 (7%)

Query: 1   MASLQASLPSISAIWSS-----FPDSSSINSASIVTLTSSPANDRRI---RRRLR----- 47
           MA +Q   P+ SAI +       P S+S+  AS+V++++   N RR+   RR  R     
Sbjct: 1   MALVQGIAPATSAIRTPRSLLYSPHSASL-IASLVSVSAPLENGRRVLVGRRFGRISEAR 59

Query: 48  -CKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERI 106
            C+AMVQQA QGAPA YAKEMERLSAKESLLLAFKD+GGFEALV GKTT MQ IDVNERI
Sbjct: 60  VCRAMVQQAAQGAPATYAKEMERLSAKESLLLAFKDSGGFEALVTGKTTEMQSIDVNERI 119

Query: 107 TGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKD 166
           TGLERLNPTPRPTTSP+LEG+WN EWFG+G PG   ARF+F+ FP  LANLS +DVVIKD
Sbjct: 120 TGLERLNPTPRPTTSPYLEGQWNLEWFGTGKPGSLAARFLFQIFPSALANLSKVDVVIKD 179

Query: 167 GKANITANFKLLNSVLS 183
                T N KLLNSV S
Sbjct: 180 SYGKTTVNLKLLNSVES 196

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2060020	299	AT2G42130 [Arabidopsis thalian	0.933	0.608	0.644	8.6e-56
TAIR|locus:2095803	308	PGL34 "plastoglobulin 34kD" [A	0.928	0.587	0.594	5.6e-52

TAIR|locus:2060020 AT2G42130 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 118/183 (64%), Positives = 134/183 (73%)

Query:     1 MASLQASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAP 60
             MA +  S+P  SA+   F  S+S +   +             RRR+  +AMVQ+ VQG+P
Sbjct:     1 MALIHGSVPGTSAVRLVFSTSASPSRFCLNVPVVKQGWKNSCRRRV-LRAMVQETVQGSP 59

Query:    61 AAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTT 120
               YA+EMERLSAKESLLLA KDAGGFEALV GKTTNMQ+IDVNERIT LERLNPTPRPTT
Sbjct:    60 LVYAREMERLSAKESLLLALKDAGGFEALVTGKTTNMQRIDVNERITSLERLNPTPRPTT 119

Query:   121 SPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNS 180
             SP  EGRWNFEWFGSGSPG   AR IFERFP TLANLS M+++IKD  A  TAN KLLNS
Sbjct:   120 SPCFEGRWNFEWFGSGSPGLLAARVIFERFPSTLANLSRMEILIKDANAKATANIKLLNS 179

Query:   181 VLS 183
             + S
Sbjct:   180 IES 182

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TAIR|locus:2095803 PGL34 "plastoglobulin 34kD" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:     1 MASLQ-ASLPSISAIWSSFPDSSSINSAS--IVTLTSSPANDRR-IRRRLRCKAMVQQAV 56
             MA +Q  S+   SA+  SF  S S  S+S  +  ++ +  ++++   RR+ C+AMVQ +V
Sbjct:     1 MALIQHGSVSGTSAVRLSFSSSVSPPSSSPPLSRVSLNFQSEKKSCYRRMICRAMVQDSV 60

Query:    57 QGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTP 116
             QG P+ YA+EMERLSAKESL+LAF DAGGFEALV GK T+MQ+IDVNERIT LERLNPTP
Sbjct:    61 QGIPSVYAREMERLSAKESLILAFNDAGGFEALVTGKITDMQKIDVNERITNLERLNPTP 120

Query:   117 RPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFK 176
             RPTTSP+LEGRW+FEWFG  +PG    R +FERFP TL +LSNM++ IKD     TAN K
Sbjct:   121 RPTTSPYLEGRWSFEWFGVNTPGSLAVRVMFERFPSTLVSLSNMEIFIKDNNTKATANIK 180

Query:   177 LLNSV 181
             LLNS+
Sbjct:   181 LLNSI 185


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       195   0.00078  111 3  11 22  0.44    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.77u 0.09s 19.86t   Elapsed:  00:00:01
  Total cpu time:  19.77u 0.09s 19.86t   Elapsed:  00:00:01
  Start:  Fri May 10 14:43:49 2013   End:  Fri May 10 14:43:50 2013

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9M1	PAP13_ARATH	No assigned EC number	0.6448	0.9333	0.6086	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XVI000350 SubName- Full=Putative uncharacterized protein; (257 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.59

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.59  E-value=6.6e-15  Score=115.89  Aligned_cols=95  Identities=25%  Similarity=0.442  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhhcCCCCCCCCC-CcccceeEEEEecCCCchHHHHHHHHH-
Q 029310           71 SAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTS-PFLEGRWNFEWFGSGSPGFFVARFIFE-  148 (195)
Q Consensus        71 sAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~LNPTPrPttS-pLLeG~W~Lly~G~~SPG~~Aar~L~~-  148 (195)
                      .+|++||.+++   |.++|+.  .++.||.+|+++|.+||++||||+|+++ ++|+|+|+|.|........    .|.. 
T Consensus         2 ~~K~~Ll~~~~---~~~rG~~--~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~----~l~~~   72 (198)
T PF04755_consen    2 DLKQELLQAVA---GTNRGLR--ASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRS----LLQRG   72 (198)
T ss_pred             hHHHHHHHHHh---ccCCCcc--CCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccc----ccccc
Confidence            58999999999   8888887  5677899999999999999999999999 8999999999988665551    1222 


Q ss_pred             hccccccccCCceEEEeCCccceeeeeE
Q 029310          149 RFPPTLANLSNMDVVIKDGKANITANFK  176 (195)
Q Consensus       149 rfPs~la~l~~l~v~I~dg~~k~ta~~k  176 (195)
                      ++|.  +.++.+-=.|...+.+++-.++
T Consensus        73 ~~~~--~~~~~v~Q~id~~~~~~~N~v~   98 (198)
T PF04755_consen   73 RLPG--VRVGRVFQTIDADNGRVENVVE   98 (198)
T ss_pred             cccc--ccccceEEEEECCCceEEEEEE
Confidence            2333  4566666666444444444333

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
1utr_A	96	Uteroglobin; clara cell 17 kDa protein (CC10), pho	82.75

>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1

Probab=82.75  E-value=2.6  Score=30.78  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=52.8

Q ss_pred             HHHHHHhhCChhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhhcCCCCCCCCCCcccceeE
Q 029310           50 AMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWN  129 (195)
Q Consensus        50 a~vq~~~~g~~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~LNPTPrPttSpLLeG~W~  129 (195)
                      ..++.+-.|++..|-.++++..+-+..++|..   ++..-+- +.++.+|..|...+.++         ..||+=+++|+
T Consensus        29 ~~v~~fl~~S~~~Y~~~L~~y~~~~~a~~A~~---~lK~Cvd-~ls~e~r~~i~~ll~~I---------~~S~~C~~~~~   95 (96)
T 1utr_A           29 QVLEALLLGSESNYEAALKPFNPASDLQNAGT---QLKRLVD-TLPQETRINIVKLTEKI---------LTSPLCEQDLR   95 (96)
T ss_dssp             HHHHHHTTCCSSHHHHHHGGGCCCHHHHHHHH---HHHHHHT-TSCSHHHHHHHHHHHHH---------TSCCCC-----
T ss_pred             HHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHH---HHHHHHH-hCCHHHHHHHHHHHHHH---------HcCccccccCC
Confidence            34566677999999999999999999999998   8999888 99999999997777766         35777778887


Q ss_pred             E
Q 029310          130 F  130 (195)
Q Consensus       130 L  130 (195)
                      +
T Consensus        96 ~   96 (96)
T 1utr_A           96 V   96 (96)
T ss_dssp             -
T ss_pred             C
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00