Citrus Sinensis ID: 029315

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVKKKEV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccHHHHHHHHHHHHHHHHHEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MCRQRQSMQQIVAVFLLILAAVFLSIgegsskrsssgdpdhilfYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLAsiskspdgeairqhgffygwtpltlIPVIFNSLGGILVGLVtshaggvrKGFVIVSALLVTAMLQFIfegkppslycLIALPLVVSSISIyqkypyqvkkkev
Flexible Loop (DISEMBL)
MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISiyqkypyqvkkkev
Low Complexity Region (SEG)
MCRQRQSMQQivavfllilaavflsigegsskrsssgDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVKKKEV
Disordered region (IsUnstruct)
*********QIVAVFLLILAAVFLSIG*************HILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQ******
Disordered Region (DISOPRED)
*CRQRQSMQQIVAVFLLILAAVFL******************LFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQK**********
Disordered Region (DISEMBL)
********QQIVAVFLLILAAVFLSIG**********DPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVKKKEV
Disordered Region (DISPRO)
*CRQRQSMQQIVAVFLLILAAVFLSIGE***********DHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQV*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVKKKEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q8LES0	325	CMP-sialic acid transport	yes	no	0.984	0.590	0.786	9e-83
Q6AXR5	326	UDP-N-acetylglucosamine t	yes	no	0.948	0.567	0.253	3e-10
O77592	326	UDP-N-acetylglucosamine t	yes	no	0.789	0.472	0.290	1e-09
Q6YC49	326	UDP-N-acetylglucosamine t	yes	no	0.789	0.472	0.283	1e-09
Q9Y2D2	325	UDP-N-acetylglucosamine t	yes	no	0.928	0.556	0.260	2e-09
Q8R1T4	326	UDP-N-acetylglucosamine t	yes	no	0.789	0.472	0.283	5e-09
P78382	337	CMP-sialic acid transport	no	no	0.917	0.531	0.256	3e-06
A4IHW3	321	Probable UDP-sugar transp	no	no	0.887	0.538	0.243	2e-05
Q61420	336	CMP-sialic acid transport	no	no	0.702	0.407	0.260	3e-05
P87041	353	UDP-galactose transporter	yes	no	0.707	0.390	0.255	3e-05

>sp|Q8LES0|CSTR5_ARATH CMP-sialic acid transporter 5 OS=Arabidopsis thaliana GN=At5g65000 PE=2 SV=1

 Score =  305 bits (782), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 172/192 (89%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
           RQ+QS+ QI A+ LLI+AAV LS+GEGS+K SS  + D  LFYGI+PVL ASVLSGLAS+
Sbjct: 132 RQKQSILQIGALCLLIMAAVLLSVGEGSNKDSSGINADQKLFYGIIPVLAASVLSGLASS 191

Query: 63  LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
           LCQWASQVKKHSSYLMT+EMSIVGSLCLL S  KSPDGEAI+++GFF+GWT LTL+PVI 
Sbjct: 192 LCQWASQVKKHSSYLMTVEMSIVGSLCLLVSTLKSPDGEAIKKYGFFHGWTALTLVPVIS 251

Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
           N+LGGILVGLVTSHAGGVRKGFVIVSALLVTA+LQF FEGKPPS YCL+ALPLV+SSIS+
Sbjct: 252 NALGGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISM 311

Query: 183 YQKYPYQVKKKE 194
           YQKYPY  KKK+
Sbjct: 312 YQKYPYIDKKKK 323

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6AXR5|S35A3_RAT UDP-N-acetylglucosamine transporter OS=Rattus norvegicus GN=Slc35a3 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 97/189 (51%), Gaps = 4/189 (2%)

Query: 1   MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLA 60
           M  ++  M Q +++ +L+    F+     S + +S        F G++ VL+A   SG A
Sbjct: 131 MLGKKLGMYQWLSLVILMAGVAFVQWPSDSQELNSKDLSTGSQFVGLMAVLIACFSSGFA 190

Query: 61  SALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV 120
               +   +  K S ++  I++   GS+  L  +    DGE + ++GFF G+  LT I V
Sbjct: 191 GVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGV-YVYDGELVSKNGFFQGYNQLTWIVV 249

Query: 121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--EGKPPSLYCLIALPLVVS 178
           +  +LGG+++  V  +A  + KGF    +++++ ++ + +  +  P S++ L A+ LV++
Sbjct: 250 VLQALGGLVIAAVIKYADNILKGFATSLSIILSTIISYFWLQDFVPTSVFFLGAI-LVIA 308

Query: 179 SISIYQKYP 187
           +  +Y   P
Sbjct: 309 ATFLYGYDP 317

Uridine diphosphate-N-acetylglucosamine transporter in the Golgi apparatus.

Rattus norvegicus (taxid: 10116)

>sp|O77592|S35A3_CANFA UDP-N-acetylglucosamine transporter OS=Canis familiaris GN=SLC35A3 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 28  EGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGS 87
           E  SK  S+G      F G++ VL A   SG A    +   +  K S ++  I++   GS
Sbjct: 162 ELDSKELSAGSQ----FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGS 217

Query: 88  LCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIV 147
           +  L  +    DGE + ++GFF G+  LT I VI  +LGG+++  V  +A  + KGF   
Sbjct: 218 IFGLMGVYIY-DGELVSKNGFFQGYNRLTWIVVILQALGGLVIAAVIKYADNILKGFATS 276

Query: 148 SALLVTAMLQFIF--EGKPPSLYCLIALPLVVSSISIYQKYP 187
            +++++ ++ + +  +  P S++ L A+ LV+++  +Y   P
Sbjct: 277 LSIILSTLISYFWLQDFVPTSVFFLGAI-LVITATFLYGYDP 317

Uridine diphosphate-N-acetylglucosamine transporter in the Golgi apparatus.

Canis familiaris (taxid: 9615)

>sp|Q6YC49|S35A3_BOVIN UDP-N-acetylglucosamine transporter OS=Bos taurus GN=SLC35A3 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 8/162 (4%)

Query: 28  EGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGS 87
           E +SK  S+G      F G++ VL A   SG A    +   +  K S ++  I++   GS
Sbjct: 162 ELNSKELSAGSQ----FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGS 217

Query: 88  LCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIV 147
           +  L  +    DGE + ++GFF G+  LT I V+  +LGG+++  V  +A  + KGF   
Sbjct: 218 IFGLMGV-YVYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATS 276

Query: 148 SALLVTAMLQFIF--EGKPPSLYCLIALPLVVSSISIYQKYP 187
            +++++ ++ + +  +  P S++ L A+ LV+++  +Y   P
Sbjct: 277 LSIILSTLISYFWLQDFVPTSVFFLGAI-LVITATFLYGYDP 317

Uridine diphosphate-N-acetylglucosamine transporter in the Golgi apparatus.

Bos taurus (taxid: 9913)

>sp|Q9Y2D2|S35A3_HUMAN UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35A3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 99/192 (51%), Gaps = 11/192 (5%)

Query: 1   MCRQRQSMQQIVAVFLLILAAVFL---SIGEGSSKRSSSGDPDHILFYGIVPVLVASVLS 57
           M  ++  + Q +++ +L+    F+   S  +  SK  S+G      F G++ VL A   S
Sbjct: 131 MLSKKLGVYQWLSLVILMTGVAFVQWPSDSQLDSKELSAGSQ----FVGLMAVLTACFSS 186

Query: 58  GLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTL 117
           G A    +   +  K S ++  I++   GS+  L  +    DGE + ++GFF G+  LT 
Sbjct: 187 GFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIY-DGELVSKNGFFQGYNRLTW 245

Query: 118 IPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--EGKPPSLYCLIALPL 175
           I V+  +LGG+++  V  +A  + KGF    +++++ ++ + +  +  P S++ L A+ L
Sbjct: 246 IVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAI-L 304

Query: 176 VVSSISIYQKYP 187
           V+++  +Y   P
Sbjct: 305 VITATFLYGYDP 316

Uridine diphosphate-N-acetylglucosamine transporter in the Golgi apparatus.

Homo sapiens (taxid: 9606)

>sp|Q8R1T4|S35A3_MOUSE UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35a3 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 28  EGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGS 87
           E +SK  S+G      F G++ VL A   SG A    +   +  K S ++  I++   GS
Sbjct: 162 ELNSKDLSTGSQ----FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGS 217

Query: 88  LCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIV 147
           +  L  +    DGE + ++GFF G+  LT I V   +LGG+++  V  +A  + KGF   
Sbjct: 218 IFGLMGV-YVYDGELVSKNGFFQGYNQLTWIVVALQALGGLVIAAVIKYADNILKGFATS 276

Query: 148 SALLVTAMLQFIF--EGKPPSLYCLIALPLVVSSISIYQKYP 187
            +++++ ++ + +  +  P S++ L A+ LV+++  +Y   P
Sbjct: 277 LSIILSTIISYFWLQDFVPTSVFFLGAI-LVIAATFLYGYDP 317

Uridine diphosphate-N-acetylglucosamine transporter in the Golgi apparatus.

Mus musculus (taxid: 10090)

>sp|P78382|S35A1_HUMAN CMP-sialic acid transporter OS=Homo sapiens GN=SLC35A1 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 4/183 (2%)

Query: 1   MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLA 60
           M  +  S  Q V+VF+L  A V L   + +       + + +L +G + +  A + SG A
Sbjct: 135 MLNRTLSKLQWVSVFMLC-AGVTLVQWKPAQATKVVVEQNPLLGFGAIAI--AVLCSGFA 191

Query: 61  SALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV 120
               +   +    S ++  I+M + G +  LA +  S DG  I++ GFFYG+T      +
Sbjct: 192 GVYFEKVLKSSDTSLWVRNIQMYLSGIIVTLAGVYLS-DGAEIKEKGFFYGYTYYVWFVI 250

Query: 121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSI 180
              S+GG+   +V  +   + KGF   +A++++ +   +  G   +L   +   LV  SI
Sbjct: 251 FLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSI 310

Query: 181 SIY 183
            +Y
Sbjct: 311 YLY 313

Transports CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Homo sapiens (taxid: 9606)

>sp|A4IHW3|S35A4_XENTR Probable UDP-sugar transporter protein SLC35A4 OS=Xenopus tropicalis GN=slc35a4 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 94/189 (49%), Gaps = 16/189 (8%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPD-HILFYGIVPVLVASVLSGLAS 61
           RQR S+++ ++VFLL+ A VF S G        S D + ++   G++ +L   ++SGL++
Sbjct: 141 RQRLSVRRWLSVFLLLAAGVFYSYGGIQDLEKVSSDTNLYVTLPGLLLMLAYCLISGLSA 200

Query: 62  ALCQWASQVKK---HSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLI 118
              +   + +K   +   L      I+ +L    + SK+ D        FF G++    +
Sbjct: 201 VYTEMTLKTQKIPLNMQNLYLYSFGIIINLTAHLTSSKNSD--------FFDGFSVWVWV 252

Query: 119 PVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFI-FEGKPPSLYCLIALPLVV 177
            ++  +L G+++ LV   +  + + F+I  ++L    L FI F+ +  +L+    L +V+
Sbjct: 253 IILSQALNGLIMSLVMKLSNNITRLFIISFSMLANGFLSFILFQLQLTALFF---LAVVL 309

Query: 178 SSISIYQKY 186
             +++Y  Y
Sbjct: 310 IGLAVYMYY 318

Xenopus tropicalis (taxid: 8364)

>sp|Q61420|S35A1_MOUSE CMP-sialic acid transporter OS=Mus musculus GN=Slc35a1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 46  GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQ 105
           G   + +A + SG A    +   +    S ++  I+M + G +  LA    S DG  I++
Sbjct: 177 GFGAIAIAVLCSGFAGVYFEKVLKSSDTSLWVRNIQMYLSGIVVTLAGTYLS-DGAEIQE 235

Query: 106 HGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPP 165
            GFFYG+T      +   S+GG+   +V  +   + KGF   +A++++ +   +  G   
Sbjct: 236 KGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQI 295

Query: 166 SLYCLIALPLVVSSISIY 183
           +L   +   LV  SI +Y
Sbjct: 296 TLSFALGALLVCVSIYLY 313

Transport CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Mus musculus (taxid: 10090)

>sp|P87041|GMS1_SCHPO UDP-galactose transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gms1 PE=2 SV=3

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 46  GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSL-CLLASISKSPDGEAIR 104
           G   VLVA ++SGLA    +   +    S ++  +++S      CL   + K  D   I 
Sbjct: 186 GFSAVLVACLISGLAGVYFEKVLKDTNPSLWVRNVQLSFFSLFPCLFTILMK--DYHNIA 243

Query: 105 QHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKP 164
           ++GFF+G+  +  + ++  + GGI+V L  + A  + K F    +++++++         
Sbjct: 244 ENGFFFGYNSIVWLAILLQAGGGIIVALCVAFADNIMKNFSTSISIIISSLASVYLMDFK 303

Query: 165 PSLYCLIALPLVVSSISIYQK 185
            SL  LI + LV+++  +Y K
Sbjct: 304 ISLTFLIGVMLVIAATFLYTK 324

Essential for the transport of UDP-galactose into the lumen of Golgi apparatus.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
356525475	327	PREDICTED: UDP-N-acetylglucosamine trans	0.984	0.587	0.859	3e-91
224096177	327	predicted protein [Populus trichocarpa]	0.994	0.593	0.850	4e-85
224083690	327	predicted protein [Populus trichocarpa]	0.984	0.587	0.859	6e-85
359497266	327	PREDICTED: UDP-N-acetylglucosamine trans	0.984	0.587	0.848	5e-84
255580874	326	UDP-N-acetylglucosamine transporter, put	0.984	0.588	0.843	8e-83
449451433	331	PREDICTED: CMP-sialic acid transporter 5	1.0	0.589	0.841	2e-82
18424900	325	Nucleotide-sugar transporter family prot	0.984	0.590	0.786	5e-81
18086579	325	AT5g65000/MXK3_23 [Arabidopsis thaliana]	0.984	0.590	0.786	5e-81
8843764	262	unnamed protein product [Arabidopsis tha	0.984	0.732	0.786	6e-81
297797523	325	nucleotide-sugar transporter family prot	0.984	0.590	0.786	1e-80

>gi|356525475|ref|XP_003531350.1| PREDICTED: UDP-N-acetylglucosamine transporter-like [Glycine max]

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 165/192 (85%), Positives = 183/192 (95%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
           RQ+QS++QI A+FLLI+AAV LS+GEGS+K S+ G+ D ILFYGI+PVLVASVLSGLAS+
Sbjct: 135 RQKQSIEQIGALFLLIVAAVLLSVGEGSTKGSAIGNADQILFYGIIPVLVASVLSGLASS 194

Query: 63  LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
           LCQWASQVKKHSSYLMTIEMSIVGSLCLLAS  KSPDGEA+RQHGFFYGWTPLTLIPVIF
Sbjct: 195 LCQWASQVKKHSSYLMTIEMSIVGSLCLLASTLKSPDGEAMRQHGFFYGWTPLTLIPVIF 254

Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
           N+LGGILVGLVTSHAGGVRKGFVIVSALL+TA+LQFIF+GK PSLYCL+ALPLVV+SISI
Sbjct: 255 NALGGILVGLVTSHAGGVRKGFVIVSALLITALLQFIFDGKTPSLYCLLALPLVVTSISI 314

Query: 183 YQKYPYQVKKKE 194
           YQKYPYQVKKKE
Sbjct: 315 YQKYPYQVKKKE 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096177|ref|XP_002310563.1| predicted protein [Populus trichocarpa] gi|222853466|gb|EEE91013.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (817), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/194 (85%), Positives = 184/194 (94%)

Query: 1   MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLA 60
           M RQ+QS+QQI A+ LLI+AAV LSIGEGSSK SSS DP+ ILFYGI+PVLVASVLSGLA
Sbjct: 133 MLRQKQSIQQIGALLLLIMAAVLLSIGEGSSKGSSSSDPEQILFYGIIPVLVASVLSGLA 192

Query: 61  SALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV 120
           SALCQWASQVKKHSSYLMT+EMSIVGSLCLLAS +KSPDGEAIRQHG+FYGWTPLT+IPV
Sbjct: 193 SALCQWASQVKKHSSYLMTVEMSIVGSLCLLASTTKSPDGEAIRQHGYFYGWTPLTMIPV 252

Query: 121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSI 180
           + N+LGGILVGLVTS+AGGVRKGFVIVSALLVTA+LQF+FEGKPPS+YCL+ALPLV+SSI
Sbjct: 253 VANALGGILVGLVTSYAGGVRKGFVIVSALLVTALLQFMFEGKPPSVYCLVALPLVMSSI 312

Query: 181 SIYQKYPYQVKKKE 194
           SIYQKYPY+V KKE
Sbjct: 313 SIYQKYPYRVNKKE 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083690|ref|XP_002307086.1| predicted protein [Populus trichocarpa] gi|222856535|gb|EEE94082.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 165/192 (85%), Positives = 183/192 (95%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
           RQ+QS+QQI A+FLLI+AAV LSIGEGSSK S S DP+ ILFYGI+PVLVASVLSGLASA
Sbjct: 135 RQKQSIQQIGALFLLIMAAVLLSIGEGSSKGSGSSDPEQILFYGIIPVLVASVLSGLASA 194

Query: 63  LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
           LCQWASQVKKHSSYLMT+EMSIVGSLCLLAS +KSPDGEAIRQHG+FYGWTPLT+IPV+ 
Sbjct: 195 LCQWASQVKKHSSYLMTVEMSIVGSLCLLASTTKSPDGEAIRQHGYFYGWTPLTMIPVVA 254

Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
           N+LGGILVGLVTS+AGGVRKGFVIVSALLVTA+LQF+FEGKPPS+Y L+ALPLV+SSISI
Sbjct: 255 NALGGILVGLVTSYAGGVRKGFVIVSALLVTALLQFLFEGKPPSIYSLVALPLVMSSISI 314

Query: 183 YQKYPYQVKKKE 194
           YQKYPYQVKKKE
Sbjct: 315 YQKYPYQVKKKE 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497266|ref|XP_002268717.2| PREDICTED: UDP-N-acetylglucosamine transporter-like [Vitis vinifera] gi|296084745|emb|CBI25889.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 163/192 (84%), Positives = 182/192 (94%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
           RQ+QS QQI A+FLLI+AAV LSIGEGSSK SS  +PD ILF+GIVPVLVASVLSGLASA
Sbjct: 135 RQKQSTQQIGALFLLIIAAVLLSIGEGSSKGSSGSNPDQILFHGIVPVLVASVLSGLASA 194

Query: 63  LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
           LCQWASQVKKH+SY+MTIEMS+VGSLCLLAS  KSPDG+AIRQHGFFYGWTPLTLIPVIF
Sbjct: 195 LCQWASQVKKHTSYMMTIEMSVVGSLCLLASTYKSPDGKAIRQHGFFYGWTPLTLIPVIF 254

Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
           N++GGILVGLVTS+AGGVRKGFVIVSALLVTA+LQFIF+GKPPS YC++ALPLV++SISI
Sbjct: 255 NAVGGILVGLVTSYAGGVRKGFVIVSALLVTALLQFIFDGKPPSFYCILALPLVITSISI 314

Query: 183 YQKYPYQVKKKE 194
           YQKYPY+VKKKE
Sbjct: 315 YQKYPYRVKKKE 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580874|ref|XP_002531256.1| UDP-N-acetylglucosamine transporter, putative [Ricinus communis] gi|223529141|gb|EEF31120.1| UDP-N-acetylglucosamine transporter, putative [Ricinus communis]

 Score =  311 bits (797), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 162/192 (84%), Positives = 182/192 (94%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
           RQ+QS QQI A+FLLI+AAV LS+GEGSS+ SSS + D ILF+GIVPV+VASVLSGLAS 
Sbjct: 134 RQKQSTQQIGALFLLIMAAVLLSVGEGSSRGSSSTNSDQILFFGIVPVMVASVLSGLAST 193

Query: 63  LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
           LCQWASQVKKHSSYLMT+EMSIVGSLCLLAS +KSPDGEAIR++GFF+GWTPLT+IPVI 
Sbjct: 194 LCQWASQVKKHSSYLMTVEMSIVGSLCLLASTTKSPDGEAIRKYGFFHGWTPLTMIPVIA 253

Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
           N+LGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPS+YCL+ALPLV+SSISI
Sbjct: 254 NALGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSMYCLLALPLVISSISI 313

Query: 183 YQKYPYQVKKKE 194
           YQKYP++VKKKE
Sbjct: 314 YQKYPHRVKKKE 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451433|ref|XP_004143466.1| PREDICTED: CMP-sialic acid transporter 5-like [Cucumis sativus] gi|449504815|ref|XP_004162302.1| PREDICTED: CMP-sialic acid transporter 5-like [Cucumis sativus]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/195 (84%), Positives = 182/195 (93%)

Query: 1   MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLA 60
           + RQ+QS+QQI A+FLLI+AAV LSIGEGSSK SS G PD ILF+GI+PVLVASVLSGLA
Sbjct: 137 LLRQKQSIQQIGALFLLIVAAVLLSIGEGSSKGSSDGSPDQILFHGIIPVLVASVLSGLA 196

Query: 61  SALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV 120
           SALCQW+SQVKKHSSYLMT+EMS+VGSL L AS  KSPDGEAIRQHGFFYGWT LT+IPV
Sbjct: 197 SALCQWSSQVKKHSSYLMTVEMSVVGSLFLFASTYKSPDGEAIRQHGFFYGWTILTMIPV 256

Query: 121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSI 180
           IFN+LGGILVGLVTS AGGVRKGFVIVSALLVTA+LQFIFEGKPPS+YC++ALPLVVSSI
Sbjct: 257 IFNALGGILVGLVTSRAGGVRKGFVIVSALLVTALLQFIFEGKPPSMYCIVALPLVVSSI 316

Query: 181 SIYQKYPYQVKKKEV 195
           SIYQKYPY+VKKKE+
Sbjct: 317 SIYQKYPYRVKKKEL 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424900|ref|NP_569004.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|75155718|sp|Q8LES0.1|CSTR5_ARATH RecName: Full=CMP-sialic acid transporter 5; Short=CMP-SA-Tr 5; Short=CMP-Sia-Tr 5 gi|21553407|gb|AAM62500.1| unknown [Arabidopsis thaliana] gi|110742240|dbj|BAE99046.1| hypothetical protein [Arabidopsis thaliana] gi|124300990|gb|ABN04747.1| At5g65000 [Arabidopsis thaliana] gi|332010598|gb|AED97981.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 172/192 (89%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
           RQ+QS+ QI A+ LLI+AAV LS+GEGS+K SS  + D  LFYGI+PVL ASVLSGLAS+
Sbjct: 132 RQKQSILQIGALCLLIMAAVLLSVGEGSNKDSSGINADQKLFYGIIPVLAASVLSGLASS 191

Query: 63  LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
           LCQWASQVKKHSSYLMT+EMSIVGSLCLL S  KSPDGEAI+++GFF+GWT LTL+PVI 
Sbjct: 192 LCQWASQVKKHSSYLMTVEMSIVGSLCLLVSTLKSPDGEAIKKYGFFHGWTALTLVPVIS 251

Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
           N+LGGILVGLVTSHAGGVRKGFVIVSALLVTA+LQF FEGKPPS YCL+ALPLV+SSIS+
Sbjct: 252 NALGGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISM 311

Query: 183 YQKYPYQVKKKE 194
           YQKYPY  KKK+
Sbjct: 312 YQKYPYIDKKKK 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18086579|gb|AAL57713.1| AT5g65000/MXK3_23 [Arabidopsis thaliana]

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 172/192 (89%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
           RQ+QS+ QI A+ LLI+AAV LS+GEGS+K SS  + D  LFYGI+PVL ASVLSGLAS+
Sbjct: 132 RQKQSILQIGALCLLIMAAVLLSVGEGSNKDSSGINADQKLFYGIIPVLAASVLSGLASS 191

Query: 63  LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
           LCQWASQVKKHSSYLMT+EMSIVGSLCLL S  KSPDGEAI+++GFF+GWT LTL+PVI 
Sbjct: 192 LCQWASQVKKHSSYLMTVEMSIVGSLCLLVSTLKSPDGEAIKKYGFFHGWTALTLVPVIS 251

Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
           N+LGGILVGLVTSHAGGVRKGFVIVSALLVTA+LQF FEGKPPS YCL+ALPLV+SSIS+
Sbjct: 252 NALGGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISM 311

Query: 183 YQKYPYQVKKKE 194
           YQKYPY  KKK+
Sbjct: 312 YQKYPYIDKKKK 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8843764|dbj|BAA97312.1| unnamed protein product [Arabidopsis thaliana]

 Score =  305 bits (781), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 172/192 (89%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
           RQ+QS+ QI A+ LLI+AAV LS+GEGS+K SS  + D  LFYGI+PVL ASVLSGLAS+
Sbjct: 69  RQKQSILQIGALCLLIMAAVLLSVGEGSNKDSSGINADQKLFYGIIPVLAASVLSGLASS 128

Query: 63  LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
           LCQWASQVKKHSSYLMT+EMSIVGSLCLL S  KSPDGEAI+++GFF+GWT LTL+PVI 
Sbjct: 129 LCQWASQVKKHSSYLMTVEMSIVGSLCLLVSTLKSPDGEAIKKYGFFHGWTALTLVPVIS 188

Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
           N+LGGILVGLVTSHAGGVRKGFVIVSALLVTA+LQF FEGKPPS YCL+ALPLV+SSIS+
Sbjct: 189 NALGGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISM 248

Query: 183 YQKYPYQVKKKE 194
           YQKYPY  KKK+
Sbjct: 249 YQKYPYIDKKKK 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797523|ref|XP_002866646.1| nucleotide-sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297312481|gb|EFH42905.1| nucleotide-sugar transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 172/192 (89%)

Query: 3   RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
           RQ+QS+QQI A+ LLI+AAV LS+GEGS+K SS  + D  LF GI+PVLVASVLSGLAS+
Sbjct: 132 RQKQSIQQIGALCLLIMAAVLLSVGEGSNKDSSGINADQKLFNGIIPVLVASVLSGLASS 191

Query: 63  LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
           LCQWASQVKKHSSYLMT+EMSIVGSLCLL S  KSPDGEAI+++GFF+GWT LTL+PVI 
Sbjct: 192 LCQWASQVKKHSSYLMTVEMSIVGSLCLLVSTLKSPDGEAIKRYGFFHGWTALTLVPVIS 251

Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
           N+LGGILVGLVTSHAGGVRKGFVIVSALLVTA+LQF FEGKPPS YCL+ALPLV+SSIS+
Sbjct: 252 NALGGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISL 311

Query: 183 YQKYPYQVKKKE 194
           YQKYP   KKK+
Sbjct: 312 YQKYPCLDKKKK 323

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2177674	325	AT5G65000 [Arabidopsis thalian	0.984	0.590	0.697	4.5e-66
ZFIN|ZDB-GENE-081105-80	328	si:ch211-228b23.2 "si:ch211-22	0.707	0.420	0.316	4.4e-13
RGD|1308615	326	Slc35a3 "solute carrier family	0.707	0.423	0.281	7.3e-13
UNIPROTKB|Q6YC49	326	SLC35A3 "UDP-N-acetylglucosami	0.707	0.423	0.281	1.6e-12
UNIPROTKB|O77592	326	SLC35A3 "UDP-N-acetylglucosami	0.707	0.423	0.288	1.6e-12
UNIPROTKB|Q9Y2D2	325	SLC35A3 "UDP-N-acetylglucosami	0.707	0.424	0.281	2e-12
UNIPROTKB|Q0GA84	325	SLC35A3 "Solute carrier family	0.707	0.424	0.281	2e-12
MGI|MGI:1917648	326	Slc35a3 "solute carrier family	0.707	0.423	0.281	4.4e-12
UNIPROTKB|F1NZW9	332	SLC35A3 "Uncharacterized prote	0.707	0.415	0.274	4.7e-12
ZFIN|ZDB-GENE-030616-62	347	slc35a2 "solute carrier family	0.707	0.397	0.276	8.8e-11

TAIR|locus:2177674 AT5G65000 [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 134/192 (69%), Positives = 151/192 (78%)

Query:     3 RQRQSMQQXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDHILFYGIVPVLVASVLSGLASA 62
             RQ+QS+ Q                           + D  LFYGI+PVL ASVLSGLAS+
Sbjct:   132 RQKQSILQIGALCLLIMAAVLLSVGEGSNKDSSGINADQKLFYGIIPVLAASVLSGLASS 191

Query:    63 LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
             LCQWASQVKKHSSYLMT+EMSIVGSLCLL S  KSPDGEAI+++GFF+GWT LTL+PVI 
Sbjct:   192 LCQWASQVKKHSSYLMTVEMSIVGSLCLLVSTLKSPDGEAIKKYGFFHGWTALTLVPVIS 251

Query:   123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
             N+LGGILVGLVTSHAGGVRKGFVIVSALLVTA+LQF FEGKPPS YCL+ALPLV+SSIS+
Sbjct:   252 NALGGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISM 311

Query:   183 YQKYPYQVKKKE 194
             YQKYPY  KKK+
Sbjct:   312 YQKYPYIDKKKK 323

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

GO:0010584 "pollen exine formation" evidence=IMP

ZFIN|ZDB-GENE-081105-80 si:ch211-228b23.2 "si:ch211-228b23.2" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 45/142 (31%), Positives = 78/142 (54%)

Query:    44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI 103
             F G+V VLVA   SG A    +   +  K S ++  I++ + G +  +  +  + DG+ +
Sbjct:   176 FVGLVAVLVACCSSGFAGVYFEKILKETKQSVWVRNIQLGLFGLVFGVFGML-AYDGDRV 234

Query:   104 RQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVI-VSALLVTAMLQFIFEG 162
             R+HG F G+  LT I V   +LGG+++  V  +A  + KGF   +S +L T +  F+ E 
Sbjct:   235 REHGMFQGYNTLTWIVVALQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFLLED 294

Query:   163 -KPPSLYCLIALPLVVSSISIY 183
              +P S++ L A+ LV+ +  +Y
Sbjct:   295 FEPTSVFFLGAI-LVIMATFLY 315

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

RGD|1308615 Slc35a3 "solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 40/142 (28%), Positives = 79/142 (55%)

Query:    44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI 103
             F G++ VL+A   SG A    +   +  K S ++  I++   GS+  L  +    DGE +
Sbjct:   174 FVGLMAVLIACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYVY-DGELV 232

Query:   104 RQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--E 161
              ++GFF G+  LT I V+  +LGG+++  V  +A  + KGF    +++++ ++ + +  +
Sbjct:   233 SKNGFFQGYNQLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTIISYFWLQD 292

Query:   162 GKPPSLYCLIALPLVVSSISIY 183
               P S++ L A+ LV+++  +Y
Sbjct:   293 FVPTSVFFLGAI-LVIAATFLY 313

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6YC49 SLC35A3 "UDP-N-acetylglucosamine transporter" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 40/142 (28%), Positives = 78/142 (54%)

Query:    44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI 103
             F G++ VL A   SG A    +   +  K S ++  I++   GS+  L  +    DGE +
Sbjct:   174 FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYVY-DGELV 232

Query:   104 RQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--E 161
              ++GFF G+  LT I V+  +LGG+++  V  +A  + KGF    +++++ ++ + +  +
Sbjct:   233 SKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQD 292

Query:   162 GKPPSLYCLIALPLVVSSISIY 183
               P S++ L A+ LV+++  +Y
Sbjct:   293 FVPTSVFFLGAI-LVITATFLY 313

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

UNIPROTKB|O77592 SLC35A3 "UDP-N-acetylglucosamine transporter" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 41/142 (28%), Positives = 78/142 (54%)

Query:    44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI 103
             F G++ VL A   SG A    +   +  K S ++  I++   GS+  L  +    DGE +
Sbjct:   174 FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIY-DGELV 232

Query:   104 RQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--E 161
              ++GFF G+  LT I VI  +LGG+++  V  +A  + KGF    +++++ ++ + +  +
Sbjct:   233 SKNGFFQGYNRLTWIVVILQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQD 292

Query:   162 GKPPSLYCLIALPLVVSSISIY 183
               P S++ L A+ LV+++  +Y
Sbjct:   293 FVPTSVFFLGAI-LVITATFLY 313

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q9Y2D2 SLC35A3 "UDP-N-acetylglucosamine transporter" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 40/142 (28%), Positives = 78/142 (54%)

Query:    44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI 103
             F G++ VL A   SG A    +   +  K S ++  I++   GS+  L  +    DGE +
Sbjct:   173 FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIY-DGELV 231

Query:   104 RQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--E 161
              ++GFF G+  LT I V+  +LGG+++  V  +A  + KGF    +++++ ++ + +  +
Sbjct:   232 SKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQD 291

Query:   162 GKPPSLYCLIALPLVVSSISIY 183
               P S++ L A+ LV+++  +Y
Sbjct:   292 FVPTSVFFLGAI-LVITATFLY 312

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0006047 "UDP-N-acetylglucosamine metabolic process" evidence=TAS

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=TAS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q0GA84 SLC35A3 "Solute carrier family 35 member A3" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 40/142 (28%), Positives = 78/142 (54%)

Query:    44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI 103
             F G++ VL A   SG A    +   +  K S ++  I++   GS+  L  +    DGE +
Sbjct:   173 FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIY-DGELV 231

Query:   104 RQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--E 161
              ++GFF G+  LT I V+  +LGG+++  V  +A  + KGF    +++++ ++ + +  +
Sbjct:   232 SKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQD 291

Query:   162 GKPPSLYCLIALPLVVSSISIY 183
               P S++ L A+ LV+++  +Y
Sbjct:   292 FVPTSVFFLGAI-LVITATFLY 312

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

MGI|MGI:1917648 Slc35a3 "solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3" [Mus musculus (taxid:10090)]

 Score = 167 (63.8 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 40/142 (28%), Positives = 77/142 (54%)

Query:    44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI 103
             F G++ VL A   SG A    +   +  K S ++  I++   GS+  L  +    DGE +
Sbjct:   174 FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYVY-DGELV 232

Query:   104 RQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--E 161
              ++GFF G+  LT I V   +LGG+++  V  +A  + KGF    +++++ ++ + +  +
Sbjct:   233 SKNGFFQGYNQLTWIVVALQALGGLVIAAVIKYADNILKGFATSLSIILSTIISYFWLQD 292

Query:   162 GKPPSLYCLIALPLVVSSISIY 183
               P S++ L A+ LV+++  +Y
Sbjct:   293 FVPTSVFFLGAI-LVIAATFLY 313

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NZW9 SLC35A3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 4.7e-12, P = 4.7e-12
 Identities = 39/142 (27%), Positives = 77/142 (54%)

Query:    44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI 103
             F G++ VL+A   SG A    +   +  K S ++  I++   GS+  L  +    DGE +
Sbjct:   180 FVGLMAVLIACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIY-DGEQL 238

Query:   104 RQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--E 161
              + GFF G+  LT I V+  +LGG+++  V  +A  + KGF    +++++ ++ + +  +
Sbjct:   239 SKDGFFQGYNKLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQD 298

Query:   162 GKPPSLYCLIALPLVVSSISIY 183
               P S++   A+ LV+++  +Y
Sbjct:   299 FVPTSVFFFGAI-LVIAATFLY 319

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030616-62 slc35a2 "solute carrier family 35 (UDP-galactose transporter), member 2" [Danio rerio (taxid:7955)]

 Score = 156 (60.0 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 39/141 (27%), Positives = 74/141 (52%)

Query:    44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI 103
             F G++ V+++ + SG A    +   +    S ++  I++ I G++  L  +  + DG AI
Sbjct:   173 FKGLLSVIISCLSSGFAGVYFEKILKGSSASVWMRNIQLGIFGTVLGLLGMWWN-DGAAI 231

Query:   104 RQHGFFYGWTPLTLIPVIFN-SLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEG 162
              + GF +G+TP+    VIFN + GG+LV +V  +A  + KGF    +++V+ +      G
Sbjct:   232 AEKGFLFGYTPMVW-GVIFNQAFGGLLVAVVVKYADNILKGFATSFSIIVSTITSVYLFG 290

Query:   163 KPPSLYCLIALPLVVSSISIY 183
                 L   +   LV+ ++ +Y
Sbjct:   291 FHVDLVFTLGAGLVIGAVYMY 311

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LES0	CSTR5_ARATH	No assigned EC number	0.7864	0.9846	0.5907	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VII0191 hypothetical protein (328 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	2e-15
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	1e-06

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 1   MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLA 60
           M  ++ S  Q  ++ LL L    + + + SS+ +S    +     G+  VL A   SG A
Sbjct: 64  MLGRKLSWYQWASLLLLFLGVAIVQLDQKSSETNSKRGAEQNPGLGLSAVLAACFTSGFA 123

Query: 61  SALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV 120
               +   +    S ++  I++   G    L +     DG AI + GFF+G+T      V
Sbjct: 124 GVYFEKILKGSNTSIWIRNIQLYFFGIFFALLTCWLY-DGSAISEKGFFFGYTAFVWAVV 182

Query: 121 IFNSLGGILVGLVTSHAGGVRKGF-VIVSALLVTAMLQFIFEGKPPSLYCLIALPLV 176
           +  ++GG++V +V  +A  + KGF   ++ +L T     +F+ + P+L  L+   LV
Sbjct: 183 LLQAVGGLVVAVVVKYADNILKGFATSLAIILSTVASVLLFDFR-PTLTFLLGAILV 238

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 5/175 (2%)

Query: 9   QQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWAS 68
            Q  ++ LL L    + + + S+K    G        G+  VL A + SG A    +   
Sbjct: 53  DQWFSLKLLKLGVAIVQMVQSSAKTLMFG----NPVVGLSAVLSALLSSGFAGVYFEKIL 108

Query: 69  QVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGI 128
           +      +   +++ + G     + +  S DG  I   GFF G+     I  + N  GG+
Sbjct: 109 KDGDTMFWSRNLQLPLFGLFSTFSVLLWS-DGTLISNFGFFIGYPTAVWIVGLLNVGGGL 167

Query: 129 LVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIY 183
            +G V  +A    K FV   +++++ +          S    +   LV  +  +Y
Sbjct: 168 CIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	100.0
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.95
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.75
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.67
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.65
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.6
PLN00411	358	nodulin MtN21 family protein; Provisional	99.55
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.55
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.49
KOG1580	337	consensus UDP-galactose transporter related protei	99.49
PRK11689	295	aromatic amino acid exporter; Provisional	99.49
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.48
PRK11272	292	putative DMT superfamily transporter inner membran	99.47
PRK15430	296	putative chloramphenical resistance permease RarD;	99.34
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.33
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.17
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.14
KOG1581	327	consensus UDP-galactose transporter related protei	99.12
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.04
KOG1582	367	consensus UDP-galactose transporter related protei	98.84
KOG2765	416	consensus Predicted membrane protein [Function unk	98.65
COG2962	293	RarD Predicted permeases [General function predict	98.61
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.61
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.6
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.48
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.47
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.24
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.21
COG2510	140	Predicted membrane protein [Function unknown]	98.18
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.15
KOG2766	336	consensus Predicted membrane protein [Function unk	97.89
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.83
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.75
PRK15430	296	putative chloramphenical resistance permease RarD;	97.71
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.67
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.64
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.63
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.52
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.51
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.41
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.36
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.3
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.29
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.28
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.26
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.08
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.81
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.74
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.67
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.61
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.59
COG2076	106	EmrE Membrane transporters of cations and cationic	96.35
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.17
PRK11272	292	putative DMT superfamily transporter inner membran	96.15
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.11
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.08
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	96.05
PRK11689	295	aromatic amino acid exporter; Provisional	95.91
PRK11431	105	multidrug efflux system protein; Provisional	95.86
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.76
PLN00411	358	nodulin MtN21 family protein; Provisional	95.46
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.44
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.06
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	94.12
PRK13499	345	rhamnose-proton symporter; Provisional	93.95
COG2962	293	RarD Predicted permeases [General function predict	93.64
KOG2922	335	consensus Uncharacterized conserved protein [Funct	93.57
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	93.09
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	92.3
KOG4831	125	consensus Unnamed protein [Function unknown]	88.92
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	88.66
PRK13499	345	rhamnose-proton symporter; Provisional	88.56
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	87.41
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	83.36
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	82.25

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.8e-46  Score=309.26  Aligned_cols=189  Identities=31%  Similarity=0.477  Sum_probs=174.1

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      +||||++++||.|++++++|+.++|.+..++.+...+.++.+...|+.+++.+|++||+||+|+||++|+.+.+.|+||+
T Consensus       139 ~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~Ni  218 (345)
T KOG2234|consen  139 ILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNI  218 (345)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            48999999999999999999999996655544333356678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHh
Q 029315           81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF  160 (195)
Q Consensus        81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~l  160 (195)
                      |||++|++++++.+ ...|++++...|||+||+..+|.+++.|++||+++++++||+|||+|+|++++++++++++|+++
T Consensus       219 qL~~~g~~f~~l~~-~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~L  297 (345)
T KOG2234|consen  219 QLYFFGILFNLLTI-LLQDGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIAL  297 (345)
T ss_pred             HHHHHHHHHHHHHH-hhccccccccCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998887776 45688888888999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchhhHHHHHHHhhhhheeccCCCcc
Q 029315          161 EGKPPSLYCLIALPLVVSSISIYQKYPYQV  190 (195)
Q Consensus       161 fg~~~t~~~~~G~~lV~~s~~ly~~~~~~~  190 (195)
                      ||++||..+++|+.+|+.|+++|+.+|+++
T Consensus       298 f~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  298 FDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            999999999999999999999999888654

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=100.00  E-value=2.7e-40  Score=268.66  Aligned_cols=175  Identities=30%  Similarity=0.507  Sum_probs=158.3

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCC------CCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSS------GDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHS   74 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~------~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~   74 (195)
                      +||||++++||.|++++++|+++++.++..++++++      +..+.+...|+++++.++++||++|||.||++|+++.|
T Consensus        64 ~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s  143 (244)
T PF04142_consen   64 LLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVS  143 (244)
T ss_pred             HHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            479999999999999999999999987766532111      11345788999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315           75 SYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTA  154 (195)
Q Consensus        75 ~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~  154 (195)
                      +|.||+|||++|++++++.. ...|++++.++|||+||++++|.++..|++||+++++++||+||++|+|+++++++++.
T Consensus       144 ~~~~N~qL~~~gi~~~~~~~-~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~  222 (244)
T PF04142_consen  144 LWIQNMQLYLFGILFNLLAL-LLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTA  222 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999988886654 56788888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCchhhHHHHHHH
Q 029315          155 MLQFIFEGKPPSLYCLIALPLV  176 (195)
Q Consensus       155 lls~~lfg~~~t~~~~~G~~lV  176 (195)
                      ++|+++||.+|+..+++|+.+|
T Consensus       223 ~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  223 VLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHhCCCCchHHhhheecC
Confidence            9999999999999999998875

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00803 nst UDP-galactose transporter

Probab=99.95  E-value=2e-27  Score=190.63  Aligned_cols=177  Identities=19%  Similarity=0.221  Sum_probs=149.3

Q ss_pred             CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315            2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE   81 (195)
Q Consensus         2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~   81 (195)
                      +++|++..||.++.++..|+...+.++..+    .....++...|..+++.++.+++++++|+|+.+|+++.+.|.+|++
T Consensus        46 l~~~ls~~q~~al~~l~~~~~~~~~~~~~~----~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~  121 (222)
T TIGR00803        46 LVASLGDDQWFSLKLLKLGVAIVQMVQSSA----KTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQ  121 (222)
T ss_pred             HHhHhhHHHHHHHHHHHHhHeeeecCCCCc----cccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHH
Confidence            356666666666666666666665543321    1122357789999999999999999999999999988889999999


Q ss_pred             HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhc
Q 029315           82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFE  161 (195)
Q Consensus        82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lf  161 (195)
                      +++++.+.+... ....+++...+.++++||+..+|.+++.++.+|+++++++||+|+++|+++++++++++.++|+++|
T Consensus       122 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f  200 (222)
T TIGR00803       122 LPLFGLFSTFSV-LLWSDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLF  200 (222)
T ss_pred             HHHHHHHHHHHH-HhhcccchhhccCcccCCchHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999997655433 3456667777789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHhhhhhee
Q 029315          162 GKPPSLYCLIALPLVVSSISIY  183 (195)
Q Consensus       162 g~~~t~~~~~G~~lV~~s~~ly  183 (195)
                      |++++..+++|+.+|+.|+++|
T Consensus       201 ~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       201 DAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             cCCccHHHHHHHHHHHeeeEeC
Confidence            9999999999999999999988

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.75  E-value=3.3e-17  Score=137.27  Aligned_cols=188  Identities=19%  Similarity=0.249  Sum_probs=138.4

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      ++|||++++||.+++++++|+++...++.+++++.+ ....+...|+.+++++.++.|+.++|+||++++++.+.+....
T Consensus       111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~-~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mf  189 (303)
T PF08449_consen  111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN-SSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMF  189 (303)
T ss_pred             hcCccccHHHHHHHHHHHhhHheeeecccccccccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            479999999999999999999999987765442221 1222223499999999999999999999999999877654444


Q ss_pred             HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHH----HHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 029315           81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLI----PVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAML  156 (195)
Q Consensus        81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~----~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ll  156 (195)
                      ....++..+........+.++......|...+ +..+.    ..+.+++|...+..++|..++...+..+++.-++|.++
T Consensus       190 y~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~-p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sill  268 (303)
T PF08449_consen  190 YTNLFSLPFLLILLFLLPTGEFRSAIRFISAH-PSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILL  268 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Confidence            45667755544443331111111111122222 22332    34455666677788899999999999999999999999


Q ss_pred             HHHhcCCCCchhhHHHHHHHhhhhheeccCCCcc
Q 029315          157 QFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQV  190 (195)
Q Consensus       157 s~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~  190 (195)
                      |+++||++++..+++|..+|+.|+.+|....+++
T Consensus       269 S~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  269 SVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            9999999999999999999999999998865544

; GO: 0055085 transmembrane transport

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.7e-16  Score=128.36  Aligned_cols=185  Identities=15%  Similarity=0.180  Sum_probs=133.9

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCC--------CCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRS--------SSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKK   72 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~--------~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~   72 (195)
                      ++|||+|.+|+.+++++++|+++..+.+..+..+        +...+...+.+|+.++..+.+.|+..|.|+|..||+++
T Consensus       112 l~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG  191 (330)
T KOG1583|consen  112 LLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG  191 (330)
T ss_pred             hccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999998755443211        11223346789999999999999999999999999997


Q ss_pred             CchHHHHHHHHHHHHHHhhhhhh--ccCCchhhhh-cc---ccccc-chhhHHHHHHHHHhh-HHhhhhhhc---ccchh
Q 029315           73 HSSYLMTIEMSIVGSLCLLASIS--KSPDGEAIRQ-HG---FFYGW-TPLTLIPVIFNSLGG-ILVGLVTSH---AGGVR  141 (195)
Q Consensus        73 ~~~~~~n~~l~~~~~l~~~~~~~--~~~~~~~~~~-~~---ff~g~-~~~~~~~v~~~a~gg-~~v~~vlk~---~~~i~  141 (195)
                      ++ |.+++++.++-.+|..+.+.  +..+|..... +.   ...|. -|..|...+.|.+.+ .|+..+.-.   .++..
T Consensus       192 Kh-~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLT  270 (330)
T KOG1583|consen  192 KH-WKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLT  270 (330)
T ss_pred             CC-hHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceE
Confidence            55 88898876665578766531  0011111111 10   11122 356677777777754 555444332   55666


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315          142 KGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       142 k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                      .+...++.-.+|.++|..+|++|+++..++|+.+|++|+.+|...
T Consensus       271 VTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~  315 (330)
T KOG1583|consen  271 VTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV  315 (330)
T ss_pred             EEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            666667777899999999999999999999999999999999854

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.65  E-value=5.6e-15  Score=124.86  Aligned_cols=179  Identities=14%  Similarity=0.167  Sum_probs=136.9

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      +||+|+++.||.++++.++|+.++...|...+++  +....+...|.+++++++++.|+..|+.|+..|+++  .....-
T Consensus       126 fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~--~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~--~~~~lg  201 (334)
T PF06027_consen  126 FLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSD--SSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP--RVEFLG  201 (334)
T ss_pred             HHHhhhhHHHHHHHHHHHhhhhheeeeccccccc--CCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC--HHHHHH
Confidence            4799999999999999999999998877654321  234467889999999999999999999999998764  344456


Q ss_pred             HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHH----HHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 029315           81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF----NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAML  156 (195)
Q Consensus        81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~----~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ll  156 (195)
                      ++.++|.+++.+...+ .|++++.+  +  .|++..+.....    ...--.++..++|+.++..-+.....+.+++.+.
T Consensus       202 ~~Glfg~ii~~iq~~i-le~~~i~~--~--~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~  276 (334)
T PF06027_consen  202 MLGLFGFIISGIQLAI-LERSGIES--I--HWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALII  276 (334)
T ss_pred             HHHHHHHHHHHHHHHh-eehhhhhc--c--CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHH
Confidence            6778887766554432 34433321  1  234333322221    1223467789999999999999999999999999


Q ss_pred             HHHhcCCCCchhhHHHHHHHhhhhheeccCCC
Q 029315          157 QFIFEGKPPSLYCLIALPLVVSSISIYQKYPY  188 (195)
Q Consensus       157 s~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~  188 (195)
                      ++++||+++++..++|.++|+.|..+|...|+
T Consensus       277 ~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  277 DIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            99999999999999999999999999987653

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.60  E-value=1.9e-14  Score=120.33  Aligned_cols=181  Identities=12%  Similarity=0.109  Sum_probs=119.1

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      ++|||++++||.++++.++|+++...++.           .....|.++.+++++++++..++.+|..++++.+.+..+.
T Consensus       112 ~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~-----------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~  180 (302)
T TIGR00817       112 FLGQEFPSTLWLSLLPIVGGVALASDTEL-----------SFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYA  180 (302)
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhhhcCCcc-----------cccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHH
Confidence            36999999999999999999987642211           1224799999999999999999999988733222222222


Q ss_pred             HHHHHHHHHhhhhhhccCCchhhhhccccc---ccch-hhHHHHHHHHHh-h----HHhhhhhhcccchhhHHHHHHHHH
Q 029315           81 EMSIVGSLCLLASISKSPDGEAIRQHGFFY---GWTP-LTLIPVIFNSLG-G----ILVGLVTSHAGGVRKGFVIVSALL  151 (195)
Q Consensus        81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~---g~~~-~~~~~v~~~a~g-g----~~v~~vlk~~~~i~k~~~~~~siv  151 (195)
                      .....+.++..+.....++... ..++..+   ..+. ..+......+.+ .    .+....+|+.++.+.+....+.++
T Consensus       181 ~~~~~~~~~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv  259 (302)
T TIGR00817       181 YISIMSLFLLSPPAFITEGPPF-LPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRV  259 (302)
T ss_pred             HHHHHHHHHHHHHHHHHcchHH-HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhh
Confidence            2223333333333222222111 1111111   0111 112212122211 1    122257999999999999999999


Q ss_pred             HHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCCCccccC
Q 029315          152 VTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVKKK  193 (195)
Q Consensus       152 ~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~~~  193 (195)
                      ++.+++++++||+++...++|.++++.|+++|++.+.++|++
T Consensus       260 ~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       260 VVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             heeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            999999999999999999999999999999999876555544

specificities overlap.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.55  E-value=5.1e-13  Score=114.41  Aligned_cols=181  Identities=12%  Similarity=0.102  Sum_probs=121.5

Q ss_pred             CCCcCcHHHHHHHHHHHHHHHHHhcCCCCC---C-----------CCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHh
Q 029315            2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSS---K-----------RSSSGDPDHILFYGIVPVLVASVLSGLASALCQWA   67 (195)
Q Consensus         2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~---~-----------~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~   67 (195)
                      +|||++++||.++++.++|+.++..++...   +           +.+......+...|..+.+++++++++..++.++.
T Consensus       132 ~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~  211 (358)
T PLN00411        132 FKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHI  211 (358)
T ss_pred             hcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999876532210   0           00011122345679999999999999999999998


Q ss_pred             hccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHH---HHHHHhhHHhhhhhhcccchhhHH
Q 029315           68 SQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV---IFNSLGGILVGLVTSHAGGVRKGF  144 (195)
Q Consensus        68 ~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v---~~~a~gg~~v~~vlk~~~~i~k~~  144 (195)
                      .+++++......++..+.+ ++..+.....++.+   .......++...+.++   +..+++-.+-++.+|+.+....+.
T Consensus       212 ~~~~~~~~~~t~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~  287 (358)
T PLN00411        212 MSEYPAAFTVSFLYTVCVS-IVTSMIGLVVEKNN---PSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAI  287 (358)
T ss_pred             HHHcCcHhHHHHHHHHHHH-HHHHHHHHHHccCC---cccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHH
Confidence            8777443222223333333 33333322222111   0111122333222211   122334455667899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315          145 VIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       145 ~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                      ...+.++++.+++++++||+++...++|+++|+.|+++..+.
T Consensus       288 ~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        288 FKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999887754

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.55  E-value=6.2e-13  Score=111.15  Aligned_cols=175  Identities=9%  Similarity=0.073  Sum_probs=118.1

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCch-HHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSS-YLMT   79 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~-~~~n   79 (195)
                      ++|||++++||.++++.++|+.++..++.++        ......|+++.++++++.+...++.+|..++.+... ...+
T Consensus       107 ~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--------~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~  178 (299)
T PRK11453        107 TFGERLQGKQLAGIALAIFGVLVLIEDSLNG--------QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLV  178 (299)
T ss_pred             HhcCcCcHHHHHHHHHHHHhHHHhccccCCC--------cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHH
Confidence            3799999999999999999998887432211        122347999999999999999999999765543221 1122


Q ss_pred             HHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHH-----HhhHHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315           80 IEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNS-----LGGILVGLVTSHAGGVRKGFVIVSALLVTA  154 (195)
Q Consensus        80 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a-----~gg~~v~~vlk~~~~i~k~~~~~~siv~s~  154 (195)
                      ......+.++........++....  ......+++..|..+...+     ++..+....+|+.++...+....++++++.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~  256 (299)
T PRK11453        179 VWSALIPIIPFFVASLILDGSATM--IHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGL  256 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchhh--hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            222333333333222111111110  0111233444444444443     344555666788999999999999999999


Q ss_pred             HHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315          155 MLQFIFEGKPPSLYCLIALPLVVSSISIYQK  185 (195)
Q Consensus       155 lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~  185 (195)
                      +++++++||+++..+++|+.+++.|+++-..
T Consensus       257 ~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~  287 (299)
T PRK11453        257 ASAALLLDERLTGLQFLGAVLIMAGLYINVF  287 (299)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999877543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.49  E-value=1.4e-12  Score=111.56  Aligned_cols=175  Identities=12%  Similarity=0.151  Sum_probs=123.2

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC---chHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKH---SSYL   77 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~---~~~~   77 (195)
                      ++|||++++||.++++.++|+++...++.           .....|+++.+++++++++..++.+|.+++++.   +...
T Consensus       161 ~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~  229 (350)
T PTZ00343        161 FLKQFLNLYAYLSLIPIVGGVALASVKEL-----------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTA  229 (350)
T ss_pred             HhCCCccHHHHHHHHHHHHHHHheecccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCH
Confidence            37999999999999999999999874322           123579999999999999999999999977641   2222


Q ss_pred             HHHHH--HHHHHHHhhhhhhccCCchhhhh--c--ccccccch-hhHHHHHHHHHhhHHhh----hhhhcccchhhHHHH
Q 029315           78 MTIEM--SIVGSLCLLASISKSPDGEAIRQ--H--GFFYGWTP-LTLIPVIFNSLGGILVG----LVTSHAGGVRKGFVI  146 (195)
Q Consensus        78 ~n~~l--~~~~~l~~~~~~~~~~~~~~~~~--~--~ff~g~~~-~~~~~v~~~a~gg~~v~----~vlk~~~~i~k~~~~  146 (195)
                      .|...  ...|.++.+......+..+....  .  .....+.. ..+..++..++.+.+.+    ..+++.+....+.+.
T Consensus       230 ~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~  309 (350)
T PTZ00343        230 SNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVAN  309 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            33322  33444444333222222111000  0  11112221 12223444455566656    489999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315          147 VSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       147 ~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                      .+..+++.++|+++|||+++...++|.++++.|+++|+..
T Consensus       310 ~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        310 TLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999864

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.49  E-value=4.6e-13  Score=106.57  Aligned_cols=179  Identities=14%  Similarity=0.185  Sum_probs=133.8

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      +.||++++++..+++++++||++..+.+..-    .+.++++..+|.++++++-.+.|+.|+.+||+.+.+.++-.....
T Consensus       132 ~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv----~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~  207 (337)
T KOG1580|consen  132 FAHKSYHWRKYCCVLMIVVGVALFMYKENKV----GGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMF  207 (337)
T ss_pred             hhcccccHHHHHHHHHHHHHHHHhhcccccc----CCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHH
Confidence            4689999999999999999999999876542    244556778999999999999999999999999887653222222


Q ss_pred             HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhH---HHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 029315           81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTL---IPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQ  157 (195)
Q Consensus        81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~---~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls  157 (195)
                      -+.+++++....+..+  .+|....-.|-+.++...|   +..+..++|..++-..+-+.+...+++.++..-.++.++|
T Consensus       208 ~~NlwStL~Lg~g~lf--TGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~S  285 (337)
T KOG1580|consen  208 YTNLWSTLYLGAGLLF--TGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILIS  285 (337)
T ss_pred             HHHHHHHHHhhhhhee--hhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHH
Confidence            2455676655554433  2332222223333332222   2234556688888888899999999999999999999999


Q ss_pred             HHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315          158 FIFEGKPPSLYCLIALPLVVSSISIYQK  185 (195)
Q Consensus       158 ~~lfg~~~t~~~~~G~~lV~~s~~ly~~  185 (195)
                      +++|++|++..+++|..+|+.+...--.
T Consensus       286 Vllf~npls~rQwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  286 VLLFNNPLSGRQWLGTVLVFSALTADVV  313 (337)
T ss_pred             HHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence            9999999999999999999999765443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.49  E-value=1.2e-12  Score=109.27  Aligned_cols=173  Identities=9%  Similarity=0.023  Sum_probs=116.2

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      ++|||++++||.++++.++|+.++..++.+.+.++......+...|..+.+.++++++...++.+|..++.+ +...  .
T Consensus       112 ~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~--~  188 (295)
T PRK11689        112 FNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL--F  188 (295)
T ss_pred             HhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH--H
Confidence            369999999999999999999888755431110000001112346999999999999999999999865543 2211  1


Q ss_pred             HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHH----HHhhHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 029315           81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFN----SLGGILVGLVTSHAGGVRKGFVIVSALLVTAML  156 (195)
Q Consensus        81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~----a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ll  156 (195)
                      + ...+ +........  +++.      ....++..|..+...    .++..+-...+|+.+....+...+++++++.++
T Consensus       189 ~-~~~~-~~l~~~~~~--~~~~------~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~  258 (295)
T PRK11689        189 F-ILTA-LALWIKYFL--SPQP------AMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAAL  258 (295)
T ss_pred             H-HHHH-HHHHHHHHH--hcCc------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHH
Confidence            1 1122 222221111  1111      012333333322222    224466778999999999999999999999999


Q ss_pred             HHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315          157 QFIFEGKPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       157 s~~lfg~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                      +++++||+++..+++|.++|+.|+++-...
T Consensus       259 ~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        259 AALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            999999999999999999999998665443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.48  E-value=3.1e-12  Score=104.17  Aligned_cols=164  Identities=18%  Similarity=0.132  Sum_probs=116.7

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      ++|||++++||.++++.++|+.++..++..          .+...|+.+.++++++.+...++..+..++.+.+....+.
T Consensus        94 ~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~----------~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~  163 (260)
T TIGR00950        94 MGKERPRKLVLLAAVLGLAGAVLLLSDGNL----------SINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTG  163 (260)
T ss_pred             HccCCCcHHHHHHHHHHHHhHHhhccCCcc----------cccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHH
Confidence            479999999999999999999998643311          2335799999999999999999999888766543333332


Q ss_pred             HHHHHHHHHhhhhhhccCCchhhhhcccccccch--hhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 029315           81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTP--LTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF  158 (195)
Q Consensus        81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~--~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~  158 (195)
                      ..+..+.++........++...      ....++  ..+..++...++..+....+|+.+....+.....+++++.++++
T Consensus       164 ~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~  237 (260)
T TIGR00950       164 WVLLLGALLLLPFAWFLGPNPQ------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGL  237 (260)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence            2233443444333222221110      011111  11122233445667788899999999999999999999999999


Q ss_pred             HhcCCCCchhhHHHHHHHhhhh
Q 029315          159 IFEGKPPSLYCLIALPLVVSSI  180 (195)
Q Consensus       159 ~lfg~~~t~~~~~G~~lV~~s~  180 (195)
                      +++||+++...++|..+++.|+
T Consensus       238 ~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       238 LILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHhCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998875

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.47  E-value=2.8e-12  Score=106.86  Aligned_cols=168  Identities=14%  Similarity=0.027  Sum_probs=119.0

Q ss_pred             CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315            2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE   81 (195)
Q Consensus         2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~   81 (195)
                      +|||++++||.++++.++|+.++..++..          +....|.+..++++++.++..++.+|.-++  ++......+
T Consensus       117 ~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~  184 (292)
T PRK11272        117 FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----------SGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAE  184 (292)
T ss_pred             hcccCchhHHHHHHHHHHhHHHHhcCccc----------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHH
Confidence            59999999999999999999888643211          122479999999999999999998886432  234444455


Q ss_pred             HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHH-----HHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 029315           82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV-----IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAML  156 (195)
Q Consensus        82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v-----~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ll  156 (195)
                      +...+. .........++..       ....+...|..+     ....++..+....+|+.+....+....++++++.++
T Consensus       185 ~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~  256 (292)
T PRK11272        185 MLAAGV-VLLIASLLSGERL-------TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLL  256 (292)
T ss_pred             HHHHHH-HHHHHHHHcCCcc-------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            444443 2222221111110       001122233333     333445567778889999999999999999999999


Q ss_pred             HHHhcCCCCchhhHHHHHHHhhhhheeccCCCc
Q 029315          157 QFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQ  189 (195)
Q Consensus       157 s~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~  189 (195)
                      +++++||+++...++|.++++.|+++.+..+++
T Consensus       257 ~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        257 GTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999887765543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.34  E-value=4.4e-11  Score=99.88  Aligned_cols=163  Identities=13%  Similarity=0.094  Sum_probs=106.1

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      ++|||++++||.++++.++|+.++..++.+          ..     ...+++++++++..++.+|..++...+....+.
T Consensus       120 ~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~----------~~-----~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~  184 (296)
T PRK15430        120 FLGERFRRMQWLAVILAICGVLVQLWTFGS----------LP-----IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETM  184 (296)
T ss_pred             HhcCCCcHHHHHHHHHHHHHHHHHHHHcCC----------cc-----HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Confidence            369999999999999999999987642110          01     346667888888888877764322222233343


Q ss_pred             HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHH--HHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 029315           81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLI--PVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF  158 (195)
Q Consensus        81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~--~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~  158 (195)
                      .....+..+. ...  ..+......   ...+..+.+.  .....+++..+....+|+.++...+...+++++++.++++
T Consensus       185 ~~~~~~~~~~-~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~  258 (296)
T PRK15430        185 WLLPVAAIYL-FAI--ADSSTSHMG---QNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAV  258 (296)
T ss_pred             HHHHHHHHHH-HHH--ccCCccccc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            3333332221 111  111100000   0011111111  1223445678999999999999999999999999999999


Q ss_pred             HhcCCCCchhhHHHHHHHhhhhheec
Q 029315          159 IFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       159 ~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      +++||+|+..+++|+.+|+.++-+..
T Consensus       259 l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        259 TFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999977754444

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.33  E-value=1.2e-10  Score=97.20  Aligned_cols=170  Identities=18%  Similarity=0.116  Sum_probs=114.7

Q ss_pred             CcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHH
Q 029315            4 QRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMS   83 (195)
Q Consensus         4 ~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~   83 (195)
                      ||.++.+|  +.+.++|+.++..++.+.        +.....|.++.++++++.+...++.+|..++++ +.. ...+. 
T Consensus       117 ~~~~~~~~--~~i~~~Gv~li~~~~~~~--------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~-~~~~~-  183 (293)
T PRK10532        117 RRPVDFVW--VVLAVLGLWFLLPLGQDV--------SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PAT-VAIGS-  183 (293)
T ss_pred             CChHHHHH--HHHHHHHHheeeecCCCc--------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chH-HHHHH-
Confidence            55555555  556688988765332211        012247999999999999998888888876553 322 23433 


Q ss_pred             HHHHHHhhhhhhccCCchhhhhcccccccchh-----hHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 029315           84 IVGSLCLLASISKSPDGEAIRQHGFFYGWTPL-----TLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF  158 (195)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~-----~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~  158 (195)
                      ..+.+........ .+.+      .  .+++.     .++.++...++..+....+|+.++...+...+++++++.++++
T Consensus       184 ~~~~~~l~~~~~~-~~~~------~--~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~  254 (293)
T PRK10532        184 LIAALIFVPIGAL-QAGE------A--LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGM  254 (293)
T ss_pred             HHHHHHHHHHHHH-ccCc------c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHH
Confidence            3333333332211 1110      0  12222     2333444455566778999999999999999999999999999


Q ss_pred             HhcCCCCchhhHHHHHHHhhhhheeccC-CCccccCCC
Q 029315          159 IFEGKPPSLYCLIALPLVVSSISIYQKY-PYQVKKKEV  195 (195)
Q Consensus       159 ~lfg~~~t~~~~~G~~lV~~s~~ly~~~-~~~~~~~~~  195 (195)
                      +++||+++..+++|.++|+.++..+... ++++|-|||
T Consensus       255 l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~~  292 (293)
T PRK10532        255 IFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKEV  292 (293)
T ss_pred             HHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            9999999999999999999998777655 466677765

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.17  E-value=2.3e-09  Score=87.67  Aligned_cols=170  Identities=19%  Similarity=0.202  Sum_probs=117.9

Q ss_pred             CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315            2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE   81 (195)
Q Consensus         2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~   81 (195)
                      +|||+++++|.++++.++|+.++..++....       .. ...|..+.++++++.++..++.++.. +.+........+
T Consensus       119 ~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~-------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~  189 (292)
T COG0697         119 LGERLSLLQILGILLALAGVLLILLGGGGGG-------IL-SLLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQ  189 (292)
T ss_pred             ccCCCcHHHHHHHHHHHHhHHheecCCCcch-------hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHH
Confidence            5999999999999999999999987665421       01 57899999999999999999999888 332222222233


Q ss_pred             HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhc
Q 029315           82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFE  161 (195)
Q Consensus        82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lf  161 (195)
                      +....  ...... ...+..   .......+....+..+....++..+....+|..+....+.....+++.+.+++++++
T Consensus       190 ~~~~~--~~~~~~-~~~~~~---~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~  263 (292)
T COG0697         190 LLLAL--LLLLLF-FLSGFG---APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLL  263 (292)
T ss_pred             HHHHH--HHHHHH-Hhcccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence            22111  111111 111110   000011122222333333335667777889999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHhhhhheeccC
Q 029315          162 GKPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       162 g~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                      ||+++...++|.++++.|+.+....
T Consensus       264 ~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         264 GEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998887765

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.14  E-value=2.4e-10  Score=94.65  Aligned_cols=166  Identities=13%  Similarity=0.055  Sum_probs=105.3

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC--chH-H
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKH--SSY-L   77 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~--~~~-~   77 (195)
                      ++|||++++||.++.+.+.|+.++..++..       .   ....|..+.++++++.+...++.++..++.++  +.. .
T Consensus       110 ~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-------~---~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~  179 (281)
T TIGR03340       110 TLGETLSPLAWLGILIITLGLLVLGLSRFA-------Q---HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGY  179 (281)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHhccccc-------c---cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHH
Confidence            379999999999999999999988754321       0   11247777888888888877765554332221  111 1


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCchhhhhcccccccch--hhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHH
Q 029315           78 MTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTP--LTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAM  155 (195)
Q Consensus        78 ~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~--~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~l  155 (195)
                      ...++-..+ ++....... .++....    ....+.  ..+.......++..+....+|+.+....+.....+++++.+
T Consensus       180 ~~~~~~~~~-~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l  253 (281)
T TIGR03340       180 LGIGFLAMG-WPFLLLYLK-RHGRSMF----PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVV  253 (281)
T ss_pred             HHHHHHHHH-HHHHHHHHH-Hhccchh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHH
Confidence            122211111 222121110 0111000    001111  12222333344556677889999999989899999999999


Q ss_pred             HHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315          156 LQFIFEGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       156 ls~~lfg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      ++++++||+++...++|+.+++.|+++
T Consensus       254 ~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       254 LGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            999999999999999999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.12  E-value=1e-09  Score=90.35  Aligned_cols=177  Identities=16%  Similarity=0.135  Sum_probs=138.4

Q ss_pred             CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315            2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE   81 (195)
Q Consensus         2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~   81 (195)
                      -|||++....++..+...|+.+..+.+.+++  +....+.+..+|+.++...-+..|+....+++++|+++.+.|....-
T Consensus       131 y~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s--~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~  208 (327)
T KOG1581|consen  131 YGRKYSSFEYLVAFLISLGVSIFSLFPNSDS--SSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFG  208 (327)
T ss_pred             hcCccCcHHHHHHHHHHhheeeEEEecCCCC--ccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHH
Confidence            4899999999999999999999988765542  22233357789999999999999999999999999998888877777


Q ss_pred             HHHHHHHHhhhhhhccCCchhhhhcccccccc---hhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 029315           82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWT---PLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF  158 (195)
Q Consensus        82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~---~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~  158 (195)
                      +.+++++.+.........+.  ..-.|-.-..   +-..+.-.++++|...+...+...++++-...++..-.++.++|.
T Consensus       209 vNLf~~i~~~~~li~qg~~~--~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~  286 (327)
T KOG1581|consen  209 VNLFSAILNGTYLILQGHLL--PAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSC  286 (327)
T ss_pred             HHHHHHHHHHHhhhcCCCCc--hHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHH
Confidence            78888777766532211111  1111111111   112344566788899999999999999999999999999999999


Q ss_pred             HhcCCCCchhhHHHHHHHhhhhhe
Q 029315          159 IFEGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       159 ~lfg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      ..||++++..+++|..+|+.++++
T Consensus       287 i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  287 IVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHhCCccchhhccCeeeehHHHHH
Confidence            999999999999999999999754

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.04  E-value=1.1e-08  Score=76.83  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-----CCchHHHHHHHHHHHHHHhhhhhhccCCchhhhh-ccccc-cc--chhh
Q 029315           46 GIVPVLVASVLSGLASALCQWASQVK-----KHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQ-HGFFY-GW--TPLT  116 (195)
Q Consensus        46 G~~~~l~a~~~s~~a~vy~e~~~k~~-----~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~-~~ff~-g~--~~~~  116 (195)
                      |.++++.+++++++-.++.|+.+|++     +.+.+..-..++..+.++..+.....++++.... ....+ ..  +...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            77899999999999999999999984     2232222222344554444444333343331111 11111 11  1223


Q ss_pred             HHHHHHHHHh----hHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315          117 LIPVIFNSLG----GILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQK  185 (195)
Q Consensus       117 ~~~v~~~a~g----g~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~  185 (195)
                      +..+...++-    -+..-.++|+.+++..+....+-.++..++|+++|||++|...++|..+.+.|.++|++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            3333333332    25566889999999999999999999999999999999999999999999999999974

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.84  E-value=3.9e-08  Score=80.12  Aligned_cols=173  Identities=18%  Similarity=0.202  Sum_probs=121.2

Q ss_pred             CCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH-
Q 029315            3 RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE-   81 (195)
Q Consensus         3 ~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~-   81 (195)
                      ++|+......|..++.+|.+...+.|.+.+      ++. ..+|+.+.-.|-++.|+.|-.+|+.+|..+.+.. +.++ 
T Consensus       155 GkRY~v~d~~aA~lm~lGli~FTLADs~~s------PNF-~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~-Emvfy  226 (367)
T KOG1582|consen  155 GKRYGVHDYIAAMLMSLGLIWFTLADSQTS------PNF-NLIGVMMISGALLADAVIGNVQEKAMKMNPASSS-EMVFY  226 (367)
T ss_pred             cccccHHHHHHHHHHHHHHHhhhhcccccC------CCc-ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcc-eEEEe
Confidence            789999999999999999999999887643      222 3589999999999999999999999998865431 1111 


Q ss_pred             HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHh----hHHhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 029315           82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLG----GILVGLVTSHAGGVRKGFVIVSALLVTAMLQ  157 (195)
Q Consensus        82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~g----g~~v~~vlk~~~~i~k~~~~~~siv~s~lls  157 (195)
                      -|..|..+.++.+.+.  ++-.+...|..-.++.++...+..++.    -..+-..+|..++....-.++..-.+|.++|
T Consensus       227 Sy~iG~vflf~~mvlT--ge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lS  304 (367)
T KOG1582|consen  227 SYGIGFVFLFAPMVLT--GELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLS  304 (367)
T ss_pred             eecccHHHHHHHHHhc--ccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHH
Confidence            1334434444433322  221122222222333355444444442    2344455677777777777888888999999


Q ss_pred             HHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315          158 FIFEGKPPSLYCLIALPLVVSSISIYQK  185 (195)
Q Consensus       158 ~~lfg~~~t~~~~~G~~lV~~s~~ly~~  185 (195)
                      +++|..|+|....-|..+|+.|+|+--.
T Consensus       305 fllFsKPfT~qy~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  305 FLLFSKPFTEQYVWSGLLVVLGIYLNMY  332 (367)
T ss_pred             HHHHcCchHHHHhhhhHHHHHHHHhhcc
Confidence            9999999999999999999999987554

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.65  E-value=1e-07  Score=80.72  Aligned_cols=177  Identities=15%  Similarity=0.164  Sum_probs=113.3

Q ss_pred             CCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 029315            3 RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEM   82 (195)
Q Consensus         3 ~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l   82 (195)
                      ++|+|..+.+++++=+.|++++..++.+..+   +.++.+...|.++.++++++.|...+...|-..+++...-++ ++.
T Consensus       208 ~e~ft~sKllav~~si~GViiVt~~~s~~~~---~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~-lff  283 (416)
T KOG2765|consen  208 VERFTLSKLLAVFVSIAGVIIVTMGDSKQNS---DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQ-LFF  283 (416)
T ss_pred             cchhhHHHHHHHHHhhccEEEEEeccccccc---cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHH-HHH
Confidence            6899999999999999999999887665421   233456789999999999966655555554444443232222 333


Q ss_pred             HHHHHHHhhhhhhc---cCCchhhhhccccc-ccchhhHHHHHHHHHhh----HHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315           83 SIVGSLCLLASISK---SPDGEAIRQHGFFY-GWTPLTLIPVIFNSLGG----ILVGLVTSHAGGVRKGFVIVSALLVTA  154 (195)
Q Consensus        83 ~~~~~l~~~~~~~~---~~~~~~~~~~~ff~-g~~~~~~~~v~~~a~gg----~~v~~vlk~~~~i~k~~~~~~siv~s~  154 (195)
                      .+.| +++++..+.   ..|.   ....-|+ .-+.-.-.+++.+.+|-    .+=+..+-..+..+.+.+.+++|.++.
T Consensus       284 GfvG-LfnllllwP~l~iL~~---~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~  359 (416)
T KOG2765|consen  284 GFVG-LFNLLLLWPPLIILDF---FGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAM  359 (416)
T ss_pred             HHHH-HHHHHHHhHHHHHHHH---hccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHH
Confidence            4455 455444320   0000   0000011 11111122333333322    222334445788888889999999999


Q ss_pred             HHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          155 MLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       155 lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      +.+.++-|.++++.+++|+..|+.|-.+.+...
T Consensus       360 ~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  360 FADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            999999999999999999999999977766543

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.61  E-value=1.4e-06  Score=71.64  Aligned_cols=162  Identities=18%  Similarity=0.154  Sum_probs=105.2

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC-CchHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKK-HSSYLMT   79 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~-~~~~~~n   79 (195)
                      ++|||+|+.||+|+.+..+||....+...+-+           ...    +.-|+..|+.|..- |..|-.. .....+.
T Consensus       119 flkErls~~Q~iAV~lA~~GV~~~~~~~g~lp-----------wva----l~la~sf~~Ygl~R-K~~~v~a~~g~~lE~  182 (293)
T COG2962         119 FLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP-----------WVA----LALALSFGLYGLLR-KKLKVDALTGLTLET  182 (293)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc-----------HHH----HHHHHHHHHHHHHH-HhcCCchHHhHHHHH
Confidence            37999999999999999999998876433211           122    22334444433322 3332221 2344555


Q ss_pred             HHHHHHHHHHhhhhhhccCCchhhhhccccc-ccchhhHHHHHHHHHhh---HHhhhhhhcccchhhHHHHHHHHHHHHH
Q 029315           80 IEMSIVGSLCLLASISKSPDGEAIRQHGFFY-GWTPLTLIPVIFNSLGG---ILVGLVTSHAGGVRKGFVIVSALLVTAM  155 (195)
Q Consensus        80 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~-g~~~~~~~~v~~~a~gg---~~v~~vlk~~~~i~k~~~~~~siv~s~l  155 (195)
                      +.+.-.+.... .   ...|..+     |.. +-+...++.+....+.+   ++.+..-|+..-.+-++..+.++.+-.+
T Consensus       183 l~l~p~al~yl-~---~l~~~~~-----~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fl  253 (293)
T COG2962         183 LLLLPVALIYL-L---FLADSGQ-----FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFL  253 (293)
T ss_pred             HHHhHHHHHHH-H---HHhcCch-----hhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            55554442222 1   1222211     111 12223334444444443   6677778889999999999999999999


Q ss_pred             HHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          156 LQFIFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       156 ls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      +++++|||+++....+.-+.+-.|..+|+.+.
T Consensus       254 lav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         254 LAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988765

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.61  E-value=4.9e-07  Score=74.11  Aligned_cols=182  Identities=12%  Similarity=0.171  Sum_probs=116.9

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc-hHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHS-SYLMT   79 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~-~~~~n   79 (195)
                      +|||+++.+||+++....+|++++...|...++++. ..-.+.+.|.++.+++.++-|..-++-||.+|+++.+ .....
T Consensus       133 ~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~-~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg  211 (372)
T KOG3912|consen  133 FLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPY-TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVG  211 (372)
T ss_pred             HHhcccchhhHHHHHHHHhhhheeeeeecccccCCc-cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhh
Confidence            479999999999999999999999876654332221 1224668999999999999999999999999988643 22222


Q ss_pred             HH----HHHHHHHHhhhhhhccCCchhhh--hcccccccch----hhHHHHHHHHHhhHHhh---------hhhhcccch
Q 029315           80 IE----MSIVGSLCLLASISKSPDGEAIR--QHGFFYGWTP----LTLIPVIFNSLGGILVG---------LVTSHAGGV  140 (195)
Q Consensus        80 ~~----l~~~~~l~~~~~~~~~~~~~~~~--~~~ff~g~~~----~~~~~v~~~a~gg~~v~---------~vlk~~~~i  140 (195)
                      .+    +-+.+.  ..+.+...+.+++.+  .+|-++.|.-    ..--+.+.-+++|.+++         .+-|+.++.
T Consensus       212 ~eGlfG~v~~sl--L~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~Sat  289 (372)
T KOG3912|consen  212 WEGLFGLVILSL--LAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSAT  289 (372)
T ss_pred             hhhhHHHHHHHH--HHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHH
Confidence            22    122221  111111122222111  1222222110    00001111122222222         456777777


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315          141 RKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQK  185 (195)
Q Consensus       141 ~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~  185 (195)
                      .+...-.+...+--+++...+.|.+...+++|.++...|+.+|+.
T Consensus       290 tRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~  334 (372)
T KOG3912|consen  290 TRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ  334 (372)
T ss_pred             HHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777788888888888899999999999999999999999984

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.60  E-value=4.2e-09  Score=88.45  Aligned_cols=181  Identities=14%  Similarity=0.229  Sum_probs=117.5

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      +.+|++++.-|.+++....||.+....+.+           -...|.+..+.+.+..++-.++.++.+++++.+..-.|.
T Consensus       130 ~~~~~~s~~~~lsL~piv~GV~ias~~e~~-----------fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~l  198 (316)
T KOG1441|consen  130 LLGKTYSSMTYLSLLPIVFGVAIASVTELS-----------FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNL  198 (316)
T ss_pred             HhCCCCcceEEEEEEEeeeeEEEeeecccc-----------ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHH
Confidence            357899999999999999999888875542           225899999999999999999999999866555444443


Q ss_pred             HHH--HHHHHHhhhhhhccCCchhhhhcc-cccccchhhHHHHHHHHHh---hHHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315           81 EMS--IVGSLCLLASISKSPDGEAIRQHG-FFYGWTPLTLIPVIFNSLG---GILVGLVTSHAGGVRKGFVIVSALLVTA  154 (195)
Q Consensus        81 ~l~--~~~~l~~~~~~~~~~~~~~~~~~~-ff~g~~~~~~~~v~~~a~g---g~~v~~vlk~~~~i~k~~~~~~siv~s~  154 (195)
                      -.|  -.+..+.++......++... . + -+..|+...+..++...+.   -+..-.++...+++.-+.+...=-++..
T Consensus       199 l~y~ap~s~~~Ll~P~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi  276 (316)
T KOG1441|consen  199 LYYTAPISLIFLLIPFLDYVEGNKF-V-GFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVI  276 (316)
T ss_pred             HHHhhhHHHHHHhcchHhhhcccce-e-eeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEE
Confidence            322  22222222121111222211 1 1 1224444433333333221   1334455666666655554444445667


Q ss_pred             HHHHHhcCCCCchhhHHHHHHHhhhhheeccCCCccccCC
Q 029315          155 MLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVKKKE  194 (195)
Q Consensus       155 lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~~~~  194 (195)
                      ..|+++|+++.|+...+|..+-++|+++|++...++|+++
T Consensus       277 ~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~  316 (316)
T KOG1441|consen  277 VVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKGK  316 (316)
T ss_pred             EeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            7889999999999999999999999999999877666543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.48  E-value=4.7e-06  Score=69.57  Aligned_cols=165  Identities=13%  Similarity=0.166  Sum_probs=108.2

Q ss_pred             CCCcCcHHH----HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchH-
Q 029315            2 CRQRQSMQQ----IVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSY-   76 (195)
Q Consensus         2 l~~~ls~~q----w~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~-   76 (195)
                      +|||.+++|    +.++++.++|+.++...+.++.   ++++..+...|+...++++++.++..+..++..  + ++.. 
T Consensus       108 f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~---~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~--~-~~~~~  181 (290)
T TIGR00776       108 FGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA---GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG--V-DGLSV  181 (290)
T ss_pred             hhhccchHHHHHHHHHHHHHHHhHheEEecccccc---ccccccchhhHHHHHHHHHHHHHHHHHHHHHcC--C-Cccee
Confidence            689999999    9999999999998865432211   101002345699999999999988888888652  3 2322 


Q ss_pred             --HHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchh-hHHHHHHHHHhhHHhhhhhh-cccchhhHHHHHHHHHH
Q 029315           77 --LMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPL-TLIPVIFNSLGGILVGLVTS-HAGGVRKGFVIVSALLV  152 (195)
Q Consensus        77 --~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~-~~~~v~~~a~gg~~v~~vlk-~~~~i~k~~~~~~siv~  152 (195)
                        .+...+.+.+++.+...    .+.++      ...-+.+ ....-....++-.+...-.+ +.+.......+..+++.
T Consensus       182 ~~~~~~g~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvi  251 (290)
T TIGR00776       182 LLPQAIGMVIGGIIFNLGH----ILAKP------LKKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVII  251 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHH----hcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHH
Confidence              25555555665444332    01010      0111111 11111112333334445556 88888889999999999


Q ss_pred             HHHHHHHhcCCCCchhhH----HHHHHHhhhhhe
Q 029315          153 TAMLQFIFEGKPPSLYCL----IALPLVVSSISI  182 (195)
Q Consensus       153 s~lls~~lfg~~~t~~~~----~G~~lV~~s~~l  182 (195)
                      +++.+++++||+.+...+    +|.++++.++.+
T Consensus       252 a~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l  285 (290)
T TIGR00776       252 STLGGILILGEKKTKREMIAISVGIILIIIAANI  285 (290)
T ss_pred             HHHHHHHHhccCCCcceeehhHHHHHHHHHHHHH
Confidence            999999999999999999    999999998754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00688 rarD rarD protein

Probab=98.47  E-value=5.3e-06  Score=67.65  Aligned_cols=139  Identities=14%  Similarity=0.041  Sum_probs=81.4

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI   80 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~   80 (195)
                      ++|||++++||.++++.++|++++..++.+          ..     ...++++++.+...++.+|..+++.......+.
T Consensus       117 ~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~----------~~-----~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~  181 (256)
T TIGR00688       117 FLKERISRFQFIAVIIATLGVISNIVLKGS----------LP-----WEALVLAFSFTAYGLIRKALKNTDLAGFCLETL  181 (256)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHcCC----------ch-----HHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHH
Confidence            379999999999999999999987543110          11     245678888888888877764322111111111


Q ss_pred             HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHh
Q 029315           81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF  160 (195)
Q Consensus        81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~l  160 (195)
                      .    . .+.........++...........|...... .....++..+....+|+.++...+...+++++++.++++++
T Consensus       182 ~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       182 S----L-MPVAIYYLLQTDFATVQQTNPFPIWLLLVLA-GLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             H----H-HHHHHHHHHHhccCcccccCchhHHHHHHHH-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            1    1 1111111011111100000000012111111 22345577889999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.24  E-value=1.1e-05  Score=57.73  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=55.4

Q ss_pred             HHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhee
Q 029315          123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIY  183 (195)
Q Consensus       123 ~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly  183 (195)
                      .+++..+....+|+.+....+....++++++.++++++++|+++...++|..+++.|+.+.
T Consensus        64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   64 TALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             eehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4556688888999999999999999999999999999999999999999999999997653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.21  E-value=1.9e-05  Score=65.52  Aligned_cols=173  Identities=20%  Similarity=0.235  Sum_probs=106.3

Q ss_pred             CcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC---Cc--hHHH
Q 029315            4 QRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKK---HS--SYLM   78 (195)
Q Consensus         4 ~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~---~~--~~~~   78 (195)
                      ||.++.=..-+.+..+|+.+..+.+.+           =...|..++..++.+||+--.+.++++++++   ++  ..+.
T Consensus       134 Ek~~w~L~l~v~lI~~Glflft~KsTq-----------f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~  202 (349)
T KOG1443|consen  134 EKFRWALVLIVLLIAVGLFLFTYKSTQ-----------FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIF  202 (349)
T ss_pred             HHHHHHHHHHHHHHhhheeEEEecccc-----------eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHH
Confidence            344444445556666777777776553           1257999999999999999999999998875   11  1223


Q ss_pred             HHH-HHHHHHHHhhhhhhccCCchhhhhcccccccch-hhHHHHHHHHHhhHHhhhhhhc--------ccchhhHHHHHH
Q 029315           79 TIE-MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTP-LTLIPVIFNSLGGILVGLVTSH--------AGGVRKGFVIVS  148 (195)
Q Consensus        79 n~~-l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~-~~~~~v~~~a~gg~~v~~vlk~--------~~~i~k~~~~~~  148 (195)
                      .+| ...++.++...   ..++-........|+-+++ ..+-++...++||++. +++-.        .+.+.-+++--+
T Consensus       203 ~l~p~M~~~Ll~~~l---~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~  278 (349)
T KOG1443|consen  203 HLQPWMSIGLLPLSL---LFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIV  278 (349)
T ss_pred             HhhhHHHHHHHHHHH---HHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHH
Confidence            444 23334344323   2233222222222222222 1233344555555422 33332        445555555555


Q ss_pred             HHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCCCccc
Q 029315          149 ALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVK  191 (195)
Q Consensus       149 siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~  191 (195)
                      =-+.+.+++....++.++..-++|..+...++-.|..+|++-|
T Consensus       279 Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~~~~~~  321 (349)
T KOG1443|consen  279 KEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNEPQNFK  321 (349)
T ss_pred             HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccCccccc
Confidence            5668899999999999999999999999999999976654433

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.18  E-value=3.3e-05  Score=56.38  Aligned_cols=128  Identities=17%  Similarity=0.190  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHH-
Q 029315           47 IVPVLVASVLSGLASALCQWASQVKKHS--SYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFN-  123 (195)
Q Consensus        47 ~~~~l~a~~~s~~a~vy~e~~~k~~~~~--~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~-  123 (195)
                      ++..+++++..|+..++-+--+|+.+++  ..+|+.-+..+-....    ....+++...      ..+...|..+... 
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~----~~~g~~~~~~------~~~~k~~lflilSG   74 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVL----LVTGNWQAGG------EIGPKSWLFLILSG   74 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHH----HhcCceeccc------ccCcceehhhhHHH
Confidence            4557788888888544444446555433  2346655433322221    1223333211      1233333332222 


Q ss_pred             ---HHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          124 ---SLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       124 ---a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                         +++-++--..+|-.+.....+....++++..++|++++||++|..+++|..++.+|..+-.
T Consensus        75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence               2234666678888999999999999999999999999999999999999999999876543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=3.5e-05  Score=64.30  Aligned_cols=172  Identities=15%  Similarity=0.109  Sum_probs=116.2

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCch---HH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSS---YL   77 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~---~~   77 (195)
                      ++|+|.++.-|.++....+|......+|...+           ..|....+..+++.+.-.+|.++..+..+.+-   ..
T Consensus       124 f~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~-----------~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~  192 (314)
T KOG1444|consen  124 FFGKRPSNKVWASVFAMIIGSVAAAFTDLSFN-----------LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVF  192 (314)
T ss_pred             hcCcCchhhHHHHHHHHHHHHHhhccccceec-----------chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEe
Confidence            47899999999999999999988887666422           23889999999999999999999998775432   23


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhh----HHhhhhhhcccchhhHHHHHHHHHHH
Q 029315           78 MTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGG----ILVGLVTSHAGGVRKGFVIVSALLVT  153 (195)
Q Consensus        78 ~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg----~~v~~vlk~~~~i~k~~~~~~siv~s  153 (195)
                      +|=   +.+..+......+++|+++. ...+-.-.....|..+....+-|    .+..++.++-++..-...-..-...+
T Consensus       193 yNn---l~~L~~l~~~~~~~ge~~~l-~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t  268 (314)
T KOG1444|consen  193 YNN---LLSLPPLLILSFITGELDAL-SLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLT  268 (314)
T ss_pred             ehh---HHHHHHHHHHHHHhcchHHH-HhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHH
Confidence            342   22323333333356676622 11221122234455555545544    44456666666666655555566677


Q ss_pred             HHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          154 AMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       154 ~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      .+...+++|.+.++.-++|..+-++|-.+|+...
T Consensus       269 ~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~  302 (314)
T KOG1444|consen  269 YLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT  302 (314)
T ss_pred             HHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence            7777777899999999999999999987777664

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.89  E-value=7.8e-07  Score=72.06  Aligned_cols=176  Identities=9%  Similarity=0.114  Sum_probs=124.1

Q ss_pred             CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315            2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE   81 (195)
Q Consensus         2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~   81 (195)
                      ||.|+...|+.++++-..|+.++-.+|..+.+   ...+.|...|..++++++.+.|...+.-|..-|+-  +.....-|
T Consensus       126 LktrYrlmki~gV~iCi~GvvmvV~sDV~agd---~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~--d~~elm~~  200 (336)
T KOG2766|consen  126 LKTRYRLMKISGVVICIVGVVMVVFSDVHAGD---RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA--DRVELMGF  200 (336)
T ss_pred             HHHHHhhheeeeEEeEecceEEEEEeeecccc---ccCCCCCccCcEEEEecceeeeeccccHHHHHhcC--cHHHHHHH
Confidence            67788889999999999999988877765421   22235678899999999999999999999999776  34445566


Q ss_pred             HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHH----hhHHhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 029315           82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSL----GGILVGLVTSHAGGVRKGFVIVSALLVTAMLQ  157 (195)
Q Consensus        82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~----gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls  157 (195)
                      +.++|+++..+-. +. +..++    ---.|++..... +..++    --.+...++|--++..-+.....+=.++.++ 
T Consensus       201 lgLfGaIIsaIQ~-i~-~~~~~----~tl~w~~~i~~y-l~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i-  272 (336)
T KOG2766|consen  201 LGLFGAIISAIQF-IF-ERHHV----STLHWDSAIFLY-LRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI-  272 (336)
T ss_pred             HHHHHHHHHHHHH-hh-hccce----eeEeehHHHHHH-HHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH-
Confidence            8888887776542 21 21111    111233221111 11222    2345567778888888887777777888887 


Q ss_pred             HHhcCCCCchhhHHHHHHHhhhhheeccCCCccc
Q 029315          158 FIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVK  191 (195)
Q Consensus       158 ~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~  191 (195)
                       -.||-+.++..++....+..|..+|...+++++
T Consensus       273 -~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~  305 (336)
T KOG2766|consen  273 -RTFGYHVDWLYFLAFATIATGLIIYSTREKDEE  305 (336)
T ss_pred             -HHHhcchhhhhHHHHHHHHHhhEEeeccccCcH
Confidence             678988999999999999999999987655444

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.83  E-value=2.7e-05  Score=63.71  Aligned_cols=169  Identities=11%  Similarity=0.145  Sum_probs=99.5

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCc-chhhhhHHHHHHHHHHHHHHHHHHH--HhhccCCC--
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSS--GDPD-HILFYGIVPVLVASVLSGLASALCQ--WASQVKKH--   73 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~--~~~~-~~~~~G~~~~l~a~~~s~~a~vy~e--~~~k~~~~--   73 (195)
                      +||||+|+..-+..++-..||+++..++.--.++.+  +.+. .....|.++.+.+.+..+  ++|.-  ++=|+-+.  
T Consensus       144 ~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~a--svyIilR~iGk~~h~~m  221 (346)
T KOG4510|consen  144 FLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGA--SVYIILRYIGKNAHAIM  221 (346)
T ss_pred             HHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhh--hHHHHHHHhhccccEEE
Confidence            489999999999999999999999765532111111  1110 122356666666555333  45544  33355432  


Q ss_pred             chHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHH-hhHHhhhhhhcccchhhHHHHHHHHHH
Q 029315           74 SSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSL-GGILVGLVTSHAGGVRKGFVIVSALLV  152 (195)
Q Consensus        74 ~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~-gg~~v~~vlk~~~~i~k~~~~~~siv~  152 (195)
                      +.|-...    .+.+..+++....++++- +.    -|-+++....+....+ |+++...-+..=.+-..+.+++..+++
T Consensus       222 svsyf~~----i~lV~s~I~~~~ig~~~l-P~----cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvf  292 (346)
T KOG4510|consen  222 SVSYFSL----ITLVVSLIGCASIGAVQL-PH----CGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVF  292 (346)
T ss_pred             EehHHHH----HHHHHHHHHHhhccceec-Cc----cccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHH
Confidence            2222221    222222222222223221 10    0222222222333333 457777777776666777888999999


Q ss_pred             HHHHHHHhcCCCCchhhHHHHHHHhhhh
Q 029315          153 TAMLQFIFEGKPPSLYCLIALPLVVSSI  180 (195)
Q Consensus       153 s~lls~~lfg~~~t~~~~~G~~lV~~s~  180 (195)
                      +.+..+++||+.||...++|++.|+.+.
T Consensus       293 Af~wqv~ff~~~Pt~ws~~Ga~~vvsS~  320 (346)
T KOG4510|consen  293 AFFWQVLFFGHWPTIWSWVGAVMVVSST  320 (346)
T ss_pred             HHHHHHHHhcCCChHHHhhceeeeehhH
Confidence            9999999999999999999999998885

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.75  E-value=0.0023  Score=47.15  Aligned_cols=119  Identities=10%  Similarity=-0.012  Sum_probs=79.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccCCC-chHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccch--hhHHHHH
Q 029315           45 YGIVPVLVASVLSGLASALCQWASQVKKH-SSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTP--LTLIPVI  121 (195)
Q Consensus        45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~-~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~--~~~~~v~  121 (195)
                      .|+++.+.+.++.+.+=+...+-.++.++ +.....  +   ..+.. .                   .++  +.+..+.
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~---~~~~~-~-------------------~~p~~~i~lgl~   56 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--I---AALLA-F-------------------GLALRAVLLGLA   56 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--H---HHHHH-H-------------------hccHHHHHHHHH
Confidence            46778888888877766777666655432 111111  0   00110 0                   111  3344445


Q ss_pred             HHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHH--hcCCCCchhhHHHHHHHhhhhheeccCCC
Q 029315          122 FNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFI--FEGKPPSLYCLIALPLVVSSISIYQKYPY  188 (195)
Q Consensus       122 ~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~--lfg~~~t~~~~~G~~lV~~s~~ly~~~~~  188 (195)
                      .-++.-.+-..++|..|........+...+...++++.  +|||++|...++|.++++.|+++-++.++
T Consensus        57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            55555567778889999988888877777778888885  89999999999999999999988776433

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.71  E-value=0.0018  Score=54.05  Aligned_cols=137  Identities=12%  Similarity=0.092  Sum_probs=88.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhH--HH
Q 029315           42 ILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTL--IP  119 (195)
Q Consensus        42 ~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~--~~  119 (195)
                      +...|....+++++++|..+++.+. ..+. ++......+..+ +.++........++.++..+ . ++......+  .-
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~-~~~~-~~~~~~~~R~~~-a~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~   79 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKL-IYYV-PADEILTHRVIW-SFFFMVVLMSICRQWSYLKT-L-IQTPQKIFMLAVS   79 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHH-HHHHHHHHHHHHccHHHHHH-H-HcCHHHHHHHHHH
Confidence            4567999999999999999999954 4322 233333344333 32333222222222221110 0 111111111  11


Q ss_pred             HHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhee
Q 029315          120 VIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIY  183 (195)
Q Consensus       120 v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly  183 (195)
                      ....+.+..+....+++.+....+...+..++++.++++++++|+++...++|..+.+.|+.+-
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li  143 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ  143 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            2223344577778899999999999999999999999999999999999999999999997543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.67  E-value=0.0011  Score=54.94  Aligned_cols=127  Identities=10%  Similarity=-0.001  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhcc---CCchhhhhcccccccchhhHH--HHH
Q 029315           47 IVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKS---PDGEAIRQHGFFYGWTPLTLI--PVI  121 (195)
Q Consensus        47 ~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~---~~~~~~~~~~ff~g~~~~~~~--~v~  121 (195)
                      +++.++++++.+...+...+..+++..  . + ...+..+.+.........   .++++.       ..+++.+.  ...
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~   71 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPD--F-L-WWALLAHSVLLTPYGLWYLAQVGWSRL-------PATFWLLLAISAV   71 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhH--H-H-HHHHHHHHHHHHHHHHHhcccCCCCCc-------chhhHHHHHHHHH
Confidence            456778888888888887767655422  1 1 111222322222221110   111110       11111111  122


Q ss_pred             HHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          122 FNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       122 ~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      .++....+....+++.|........+..++++.+++++++||+++...++|..+.+.|+.+-.
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340        72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            334455677778899999999999999999999999999999999999999999999976543

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=2.2e-05  Score=64.41  Aligned_cols=145  Identities=12%  Similarity=0.066  Sum_probs=110.6

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH
Q 029315           40 DHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP  119 (195)
Q Consensus        40 ~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~  119 (195)
                      +.-...|.+.-+.++++-++-++|+.|.+-..++.+|..++-....+.+..+....+..|.+++.  +|-+-+.+..|.+
T Consensus       180 ~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~--~~~~l~a~~Fw~~  257 (347)
T KOG1442|consen  180 GTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVV--GFPHLPAIKFWIL  257 (347)
T ss_pred             CccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHc--CcccchHHHHHHH
Confidence            34456899999999999999999999888777788898777777777555444444556666543  3334455666776


Q ss_pred             HHHHHHhh----HHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315          120 VIFNSLGG----ILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       120 v~~~a~gg----~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                      .....+.|    ..+.+=+|..+..+.++..+.--+.-+++++.+.+|.-+..-+-|-.+|..|...|++.
T Consensus       258 mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~v  328 (347)
T KOG1442|consen  258 MTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLV  328 (347)
T ss_pred             HHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHH
Confidence            66655544    55556678888888888777777888999999999999999999999999999888864

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.63  E-value=0.0034  Score=52.57  Aligned_cols=121  Identities=12%  Similarity=-0.005  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhccCCCc--hHH-HHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhh-HHHHHHHHHhhHHhhhhh
Q 029315           59 LASALCQWASQVKKHS--SYL-MTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLT-LIPVIFNSLGGILVGLVT  134 (195)
Q Consensus        59 ~a~vy~e~~~k~~~~~--~~~-~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~-~~~v~~~a~gg~~v~~vl  134 (195)
                      ..++++|++.+++..+  .+. .-.|..... +.......... .+. .+...     ... ......+.++..+.+..+
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~-~~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~al   85 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNA-LFSFILLSLFK-FPK-SRKIP-----LKKYAILSFLFFLASVLSNAAL   85 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHH-HHHHHHHHhcc-ccC-CCcCh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999887544  232 223322222 23322222112 010 01111     122 233566666778888999


Q ss_pred             hcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          135 SHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       135 k~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      +|.+--+....-+..++.+.+++.++++++.+...+++.+++..|+.++...+
T Consensus        86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~  138 (303)
T PF08449_consen   86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSD  138 (303)
T ss_pred             HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecc
Confidence            99999999999999999999999999999999999999999999998877654

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.52  E-value=0.0073  Score=49.90  Aligned_cols=162  Identities=19%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             CCCcCcHHHHH----HHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc-hH
Q 029315            2 CRQRQSMQQIV----AVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHS-SY   76 (195)
Q Consensus         2 l~~~ls~~qw~----al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~-~~   76 (195)
                      ++|--+..||.    |++++.+|+.+....|.+++   +.++..+..-|+..++.+++-.....+..+ ..+-++.+ +.
T Consensus        94 fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~---~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~-~~~~~~~~~~l  169 (269)
T PF06800_consen   94 FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD---KSSSKSNMKKGILALLISTIGYWIYSVIPK-AFHVSGWSAFL  169 (269)
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc---ccccccchhhHHHHHHHHHHHHHHHHHHHH-hcCCChhHhHH
Confidence            56666666665    99999999999998776543   112234555688888888886655444433 33222222 34


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccc--hhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315           77 LMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWT--PLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTA  154 (195)
Q Consensus        77 ~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~--~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~  154 (195)
                      .|.+-+.+.+.+++...-  .+-.++..-.+.+.|.-  .-....+....-.|..+++.           .+-+++++++
T Consensus       170 PqaiGm~i~a~i~~~~~~--~~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~-----------lSQ~~vvISt  236 (269)
T PF06800_consen  170 PQAIGMLIGAFIFNLFSK--KPFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFT-----------LSQLGVVIST  236 (269)
T ss_pred             HHHHHHHHHHHHHhhccc--ccccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhh-----------HHhHHHHHHH
Confidence            577667666654443210  00000001112222211  11111111112223333333           4566788999


Q ss_pred             HHHHHhcCCCCch----hhHHHHHHHhhhh
Q 029315          155 MLQFIFEGKPPSL----YCLIALPLVVSSI  180 (195)
Q Consensus       155 lls~~lfg~~~t~----~~~~G~~lV~~s~  180 (195)
                      +-+.++++|.=+.    ..++|.++++.|.
T Consensus       237 lgGI~il~E~Kt~ke~~~~~~G~~Liv~G~  266 (269)
T PF06800_consen  237 LGGIFILKEKKTKKEMIYTLIGLILIVIGA  266 (269)
T ss_pred             hhhheEEEecCchhhHHHHHHHHHHHHHhh
Confidence            9999999988764    4677888887764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=97.51  E-value=0.0042  Score=50.49  Aligned_cols=134  Identities=16%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhh-hhcccccccchhhHHH---H
Q 029315           45 YGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI-RQHGFFYGWTPLTLIP---V  120 (195)
Q Consensus        45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~-~~~~ff~g~~~~~~~~---v  120 (195)
                      .|..+.+++++++|..++..+. ..+- ++....-.. .+++.++.........+++.. ++.... .........   .
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R-~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g   77 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHR-MIWSFPFMLLSVTLFRQWAALIERLKRI-QKRPLILSLLLCG   77 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHH-HHHHHHHHHHHHHHHcchHHHHHHHhCc-ccchHHHHHHHHH
Confidence            3888999999999999998886 4322 222222222 223333332222122222211 000000 011111111   1


Q ss_pred             HHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315          121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       121 ~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      ...+.+..+....++|.+........+..++++.++++++++|+++...++|..+.+.|+.+
T Consensus        78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l  139 (256)
T TIGR00688        78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS  139 (256)
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            11333446777889999999999999999999999999999999999999999999988643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.41  E-value=0.0019  Score=46.19  Aligned_cols=59  Identities=17%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             HhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          125 LGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       125 ~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      .+-.+....++|.+. .......++++++.++++++|+|+++...++|..++..|+.+-.
T Consensus        47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~  105 (113)
T PF13536_consen   47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIA  105 (113)
T ss_pred             HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            445677788899995 66688889999999999999999999999999999999975433

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.36  E-value=0.0013  Score=47.10  Aligned_cols=59  Identities=14%  Similarity=0.055  Sum_probs=52.1

Q ss_pred             HHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315          124 SLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       124 a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      .....+...++|..|-.......+.+.+++.++++++|||+++...++|..+++.|+.+
T Consensus        48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~  106 (111)
T PRK15051         48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI  106 (111)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            44557777889999888888888899999999999999999999999999999999754

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.30  E-value=0.0011  Score=53.23  Aligned_cols=175  Identities=14%  Similarity=0.126  Sum_probs=112.2

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC---CCchHH
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVK---KHSSYL   77 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~---~~~~~~   77 (195)
                      ++|+|.+.....+-.+..+......++|.+...-    .....-.|.+.+..-|+.++..-....+..|-.   +.+...
T Consensus       115 ~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~----~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmf  190 (309)
T COG5070         115 FFGGRVTSLELLSFILMVLSSVVATWGDQQASAF----KAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMF  190 (309)
T ss_pred             HhcCccchhhHHHHHHHHHHHHHhccchhhHHHH----HhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHH
Confidence            3688999999999999999998888888764310    011223577777777777665333333332211   112333


Q ss_pred             HHHHHHHHHHHHhhh-hhhccCCchhhhhcccccccch--hhHHHHHHH-HHh-hHHhhhhhhcccchhhHHHHHHHHHH
Q 029315           78 MTIEMSIVGSLCLLA-SISKSPDGEAIRQHGFFYGWTP--LTLIPVIFN-SLG-GILVGLVTSHAGGVRKGFVIVSALLV  152 (195)
Q Consensus        78 ~n~~l~~~~~l~~~~-~~~~~~~~~~~~~~~ff~g~~~--~~~~~v~~~-a~g-g~~v~~vlk~~~~i~k~~~~~~siv~  152 (195)
                      +|   ...+ +|.++ .....+||++-   +.-.+++.  ..|..+... ++| -.+.+|++|..++..-+..-++.-..
T Consensus       191 Yn---Nlls-lPiL~~~s~~~edws~~---n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp  263 (309)
T COG5070         191 YN---NLLS-LPILLSFSFLFEDWSPG---NLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLP  263 (309)
T ss_pred             Hh---hhHH-HHHHHHHHHHhccCCcc---hhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhCh
Confidence            33   2223 34333 23456788642   22234333  335444333 333 47889999999988888888887788


Q ss_pred             HHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315          153 TAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       153 s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                      .++.+.++||+|.+...+....+=+.+-.+|...
T Consensus       264 ~alaGlvffdap~nf~si~sillGflsg~iYava  297 (309)
T COG5070         264 IALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA  297 (309)
T ss_pred             HHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999998887776666654

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.29  E-value=0.0031  Score=45.89  Aligned_cols=70  Identities=13%  Similarity=0.146  Sum_probs=53.0

Q ss_pred             HHHHHHHHhhHHhhhhhhcccchhh-HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          118 IPVIFNSLGGILVGLVTSHAGGVRK-GFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       118 ~~v~~~a~gg~~v~~vlk~~~~i~k-~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      ..+..-++.-.+.+.++|+.+-... ...+.+.++.+.++++++|||+++...++|..+++.|+..-+...
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3344445555677788888665443 334578999999999999999999999999999999986655543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.28  E-value=0.00067  Score=53.39  Aligned_cols=166  Identities=14%  Similarity=0.078  Sum_probs=107.4

Q ss_pred             CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315            2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE   81 (195)
Q Consensus         2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~   81 (195)
                      ||.|+...++++.++..-|++++.+.|..         ..+.++|+.+.+.++..+++.-|.+++..-+.  +.--...+
T Consensus       101 L~D~~~~~kIlaailAI~GiVmiay~DN~---------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA--n~Gdaa~F  169 (290)
T KOG4314|consen  101 LGDRFMGFKILAAILAIGGIVMIAYADNE---------HADEIIGIACAVGSAFMAALYKVLFKMFIGNA--NFGDAAHF  169 (290)
T ss_pred             hccchhhhhHHHHHHHhCcEEEEEeccch---------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC--cchhHHHH
Confidence            68899999999999999999998865543         24668999999999998888888777776433  32223334


Q ss_pred             HHHHHHHHhhhhhhc---------cCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHH
Q 029315           82 MSIVGSLCLLASISK---------SPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLV  152 (195)
Q Consensus        82 l~~~~~l~~~~~~~~---------~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~  152 (195)
                      ++..| .+++.....         .+.++...    -..|..+.-..-++.+++ +++++-+-....++.+.-+.+++..
T Consensus       170 mS~LG-F~NL~~~~~~~lIL~~T~VE~~qsFA----~~PWG~l~G~A~L~lAFN-~~iN~GiaL~~PilISiG~l~~iP~  243 (290)
T KOG4314|consen  170 MSCLG-FFNLCFISFPALILAFTGVEHLQSFA----AAPWGCLCGAAGLSLAFN-FLINFGIALLNPILISIGMLCGIPG  243 (290)
T ss_pred             HHHHH-HHHHHHHhhhHHHHHHhchHHHHHHh----hCCchhhhhHHHHHHHHh-hheeehhhhhchhhheehheecCcc
Confidence            44444 233332211         12222110    001222222222333322 3344444556677777788888889


Q ss_pred             HHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          153 TAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       153 s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      .+..+.++-+-..+..++.|.+++..|-.+--
T Consensus       244 NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii  275 (290)
T KOG4314|consen  244 NAAIDILFQELEFNTLFLAATCIICIGFILII  275 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence            99999998888899999999999999854433

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.26  E-value=0.0029  Score=53.17  Aligned_cols=116  Identities=16%  Similarity=0.154  Sum_probs=83.5

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc-hHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH
Q 029315           41 HILFYGIVPVLVASVLSGLASALCQWASQVKKHS-SYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP  119 (195)
Q Consensus        41 ~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~-~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~  119 (195)
                      .+..+|+.+.+.++++.+.+-.+++|..+|.++. ..... .    +  ....                   -++.+|.=
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-~----~--~~~l-------------------~~~~W~~G   56 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-G----G--RSYL-------------------RRPLWWIG   56 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-h----h--hHHH-------------------hhHHHHHH
Confidence            4678999999999999999999999887766431 10000 0    0  0000                   01122322


Q ss_pred             HHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315          120 VIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       120 v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      ....++|-++--..+.+++..+..+..+++++++.+++.++.+|+++...++|..+++.|+.+
T Consensus        57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l  119 (300)
T PF05653_consen   57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL  119 (300)
T ss_pred             HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence            333445545555778889999999999999999999999999999999999999999998643

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.08  E-value=0.006  Score=43.72  Aligned_cols=68  Identities=12%  Similarity=0.124  Sum_probs=50.3

Q ss_pred             HHHHHHhhHHhhhhhhcccchhh-HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          120 VIFNSLGGILVGLVTSHAGGVRK-GFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       120 v~~~a~gg~~v~~vlk~~~~i~k-~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      +..-++.-.+.+..+|..+-... ...+.+..+.+.+.++++|||+++...++|+.+++.|+..-+...
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            33334444556677777654433 224567999999999999999999999999999999986655543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.81  E-value=0.045  Score=45.58  Aligned_cols=124  Identities=14%  Similarity=0.072  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhh-hccCCchhhhhcccccccchhhHH-HHHHHHHhhHHh
Q 029315           53 ASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASI-SKSPDGEAIRQHGFFYGWTPLTLI-PVIFNSLGGILV  130 (195)
Q Consensus        53 a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~-~~~~~~~~~~~~~ff~g~~~~~~~-~v~~~a~gg~~v  130 (195)
                      .+...++ ..|++..+++...+...-..|+.... +...+.. ....+.++.      ..-++..+. .-+.++..-.+.
T Consensus        11 ~~~~~~~-~~~NK~~l~~~~~P~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~   82 (302)
T TIGR00817        11 YFLNVYF-NIYNKKLLNVFPYPYFKTLISLAVGS-LYCLLSWSSGLPKRLKI------SSALLKLLLPVAIVHTIGHVTS   82 (302)
T ss_pred             HHHHHHH-HHHHHHHHhhCChhHHHHHHHHHHHH-HHHHHHHHhCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444 58888888764445555555544433 2222211 001111111      111111222 123344555677


Q ss_pred             hhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          131 GLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       131 ~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      +..++|.+....+...+..++++.++++++++|+++...++|..+.+.|+.+..
T Consensus        83 ~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        83 NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            889999999999999999999999999999999999999999999999986643

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.74  E-value=0.077  Score=45.47  Aligned_cols=128  Identities=11%  Similarity=-0.001  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccc-cccchhhH-HHHHHHHHhhHH
Q 029315           52 VASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFF-YGWTPLTL-IPVIFNSLGGIL  129 (195)
Q Consensus        52 ~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff-~g~~~~~~-~~v~~~a~gg~~  129 (195)
                      .-=.+|.....++..++++-+-+...-.+|+.+.+.. ..+....  +..+.  ..+. ....+... ..-+++..+...
T Consensus        56 ~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~-~~~~~~~--~~~~~--~~~~~~~~~~~~llp~gl~~~~~~~~  130 (350)
T PTZ00343         56 TWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLF-ALLYWAT--GFRKI--PRIKSLKLFLKNFLPQGLCHLFVHFG  130 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH-HHHHHHh--CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455557788888877643666677776655432 2221111  11100  0010 00011111 122333333344


Q ss_pred             hhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          130 VGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       130 v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      ....+++.+........+.+++++.++++++++|+++...++|.+++++|+.+-.
T Consensus       131 ~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        131 AVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            4577889999999999999999999999999999999999999999999987654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.67  E-value=0.062  Score=44.80  Aligned_cols=130  Identities=15%  Similarity=0.068  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHH--HH
Q 029315           46 GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVI--FN  123 (195)
Q Consensus        46 G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~--~~  123 (195)
                      |+++++++++++|..++..++.. +. ++.|.  +.+.+.+ ++.........+.       .++......+..+.  .-
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~-~~~~~--~~~~~g~-l~~~~~~~~~~~~-------~~~~~~~~~~g~l~G~~w   69 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GG-PYSQT--LGTTFGA-LILSIAIAIFVLP-------EFWALSIFLVGLLSGAFW   69 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CC-HHHHH--HHHHHHH-HHHHHHHHHHhCC-------cccccHHHHHHHHHHHHH
Confidence            67889999999999999998765 21 22222  2333233 3322222111110       01111111111111  12


Q ss_pred             HHhhHHhhhhhhcccchhhHHHHH-HHHHHHHHHHHHhcCCCCchhh----HHHHHHHhhhhheeccCC
Q 029315          124 SLGGILVGLVTSHAGGVRKGFVIV-SALLVTAMLQFIFEGKPPSLYC----LIALPLVVSSISIYQKYP  187 (195)
Q Consensus       124 a~gg~~v~~vlk~~~~i~k~~~~~-~siv~s~lls~~lfg~~~t~~~----~~G~~lV~~s~~ly~~~~  187 (195)
                      +.|.+..-..+|+.+..+.-...+ ..++++.+.+.++|||.++...    ++|.++++.|+++....+
T Consensus        70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            334455556677766555544434 7888999999999999999999    999999999998876653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.61  E-value=0.31  Score=40.04  Aligned_cols=164  Identities=18%  Similarity=0.112  Sum_probs=92.1

Q ss_pred             CCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 029315            3 RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEM   82 (195)
Q Consensus         3 ~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l   82 (195)
                      .||..-.-|+++.++=.+..+....+.+          .-...|....+.+..+++..=+.-+|.=+.. +..--...-|
T Consensus       116 sRr~~d~vwvaLAvlGi~lL~p~~~~~~----------~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm  184 (292)
T COG5006         116 SRRLRDFVWVALAVLGIWLLLPLGQSVW----------SLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGM  184 (292)
T ss_pred             ccchhhHHHHHHHHHHHHhheeccCCcC----------cCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHH
Confidence            4666666677776654443332221111          2224899999999999987544444554222 1222222223


Q ss_pred             HHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH-----HHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 029315           83 SIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP-----VIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQ  157 (195)
Q Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~-----v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls  157 (195)
                      .... +..+.... ...+.     .+   +++.....     ++..++-..+=-..++....-.-+...++++.+.++.+
T Consensus       185 ~vAa-viv~Pig~-~~ag~-----~l---~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G  254 (292)
T COG5006         185 LVAA-LIVLPIGA-AQAGP-----AL---FSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSG  254 (292)
T ss_pred             HHHH-HHHhhhhh-hhcch-----hh---cChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHH
Confidence            2222 22222211 11111     11   12211111     11122223444456677777777788899999999999


Q ss_pred             HHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          158 FIFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       158 ~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      +++.||.+|..++++...|+.++-=-+...
T Consensus       255 ~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~  284 (292)
T COG5006         255 LIFLGETLTLIQWLAIAAVIAASAGSTLTA  284 (292)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999988875444333

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.59  E-value=0.046  Score=44.13  Aligned_cols=63  Identities=13%  Similarity=0.066  Sum_probs=54.2

Q ss_pred             HHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315          123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQK  185 (195)
Q Consensus       123 ~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~  185 (195)
                      ..+.-.+....++|.+....+......++++.++++++++|+++...++|..+.+.|+.+...
T Consensus        57 ~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        57 IGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            344446666788999998899999999999999999999999999999999999999766543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.35  E-value=0.03  Score=39.72  Aligned_cols=62  Identities=18%  Similarity=0.120  Sum_probs=49.4

Q ss_pred             HHHHHhhHHhhhhhhcccchh-hHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315          121 IFNSLGGILVGLVTSHAGGVR-KGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       121 ~~~a~gg~~v~~vlk~~~~i~-k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      ..-...-.+.+..+|+.+-.+ -...+...++.+.+.++++|||+++...++|..+++.|+..
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~  100 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIG  100 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence            333444466778888866443 34578889999999999999999999999999999999754

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.17  E-value=0.005  Score=51.78  Aligned_cols=61  Identities=7%  Similarity=-0.062  Sum_probs=41.7

Q ss_pred             HHhhhhhhcccchhhHHHHHHHHHH-HHHHHHHhcCC--CCch----hhHHHHHHHhhhhheeccCCC
Q 029315          128 ILVGLVTSHAGGVRKGFVIVSALLV-TAMLQFIFEGK--PPSL----YCLIALPLVVSSISIYQKYPY  188 (195)
Q Consensus       128 ~~v~~vlk~~~~i~k~~~~~~siv~-s~lls~~lfg~--~~t~----~~~~G~~lV~~s~~ly~~~~~  188 (195)
                      ...+..+++.|+....+...+.-.. +.+-|.++|+|  ..+.    .++.|..+++.|+++=+...+
T Consensus       228 ~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  228 YYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence            6677888898988877755554444 44445567774  3333    678889999999988766543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.15  E-value=0.24  Score=41.13  Aligned_cols=129  Identities=11%  Similarity=0.084  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHH--HHH
Q 029315           46 GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV--IFN  123 (195)
Q Consensus        46 G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v--~~~  123 (195)
                      =+++.++..+++|...+.....+.+- ++.....+...+.+ +........ +...      ....-++......  +..
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~-l~ll~~~~~-~~~~------~~~~~~~~~~~~~g~~~~   79 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAG-ILLLAFLLL-RGHP------LPTLRQWLNAALIGLLLL   79 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHH-HHHHHHHHH-hCCC------CCcHHHHHHHHHHHHHHH
Confidence            35667888999999888888777532 34444444444444 232222211 1110      0001111111111  112


Q ss_pred             HHhhHHhhhhh-hcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          124 SLGGILVGLVT-SHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       124 a~gg~~v~~vl-k~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      +.+..+..... ++.++...+...+..++++.+++++ ++|+++...++|..+.+.|+.+-.
T Consensus        80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence            22333444455 7888777888899999999999985 799999999999999999976554

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.11  E-value=0.026  Score=40.62  Aligned_cols=66  Identities=18%  Similarity=0.282  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhhHHhhhhhhcccchhhHHH-HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315          117 LIPVIFNSLGGILVGLVTSHAGGVRKGFV-IVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       117 ~~~v~~~a~gg~~v~~vlk~~~~i~k~~~-~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      ++....|-.|-+..-+.+..+|-.+..+. ++++.++|.+.++++.++..+...++|+.+|+.|+.+
T Consensus        45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            45677777888888888999998888875 6999999999999999999999999999999999764

Many members are annotated as potential transmembrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.08  E-value=0.062  Score=38.43  Aligned_cols=63  Identities=10%  Similarity=-0.056  Sum_probs=49.0

Q ss_pred             HHHHHHhhHHhhhhhhcccchh-hHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315          120 VIFNSLGGILVGLVTSHAGGVR-KGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       120 v~~~a~gg~~v~~vlk~~~~i~-k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      +..-++.-.+.+..+|+.+-.. -...+....+.+.+.++++|||+++...++|..+++.|+..
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~  105 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM  105 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            3334445567778888765433 34466788899999999999999999999999999998754

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=96.05  E-value=0.38  Score=40.05  Aligned_cols=122  Identities=13%  Similarity=0.076  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHH-HHHHHh
Q 029315           48 VPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV-IFNSLG  126 (195)
Q Consensus        48 ~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v-~~~a~g  126 (195)
                      ++.+++++++|...+..+..+.+- ++.+...+...+.+ ++.+...  .....           ++...... .....+
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~-~~l~~~~--~~~~~-----------~~~~~~~~g~~~~~~   71 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVA-FPAIFFV--ARPKV-----------PLNLLLGYGLTISFG   71 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHH-HHHHHHh--cCCCC-----------chHHHHHHHHHHHHH
Confidence            457888999999999888777432 34444443433323 2322211  11111           01111111 111111


Q ss_pred             h-HHhhhhhhc-ccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          127 G-ILVGLVTSH-AGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       127 g-~~v~~vlk~-~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      . .+.-..++| .++.......+..++++.++++++++|+++...++|..+.+.|+.+-.
T Consensus        72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI  131 (299)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence            1 222234566 466677777889999999999999999999999999999999975443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=95.91  E-value=0.41  Score=39.80  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHH-HHH
Q 029315           46 GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVI-FNS  124 (195)
Q Consensus        46 G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~-~~a  124 (195)
                      ++++.+++++++|..-+..+...++- ++.+.-.+-+...+ ++.....    ...+.+      ...+....... ...
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~-~P~~~~~~R~~~a~-l~l~~~~----~~~~~~------~~~~~~~~~~~l~~~   72 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSESL-GPVGGAAMIYSVSG-LLLLLTV----GFPRLR------QFPKRYLLAGGLLFV   72 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccC-ChHHHHHHHHHHHH-HHHHHHc----cccccc------cccHHHHHHHhHHHH
Confidence            46678889999999878888777544 34444333333333 3332211    111101      01111111111 111


Q ss_pred             HhhHHhhhhh----hcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          125 LGGILVGLVT----SHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       125 ~gg~~v~~vl----k~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      ....+....+    ++.++...+...+..++++.++++++++|+++...++|..+.++|+.+-.
T Consensus        73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL  136 (295)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence            1122222233    34567777888899999999999999999999999999999999975544

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.86  E-value=0.1  Score=37.09  Aligned_cols=64  Identities=16%  Similarity=0.071  Sum_probs=49.6

Q ss_pred             HHHHHHhhHHhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhee
Q 029315          120 VIFNSLGGILVGLVTSHAGG-VRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIY  183 (195)
Q Consensus       120 v~~~a~gg~~v~~vlk~~~~-i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly  183 (195)
                      +..-++.-.+.+..+|..+- +.-...+...++.+.+.++++|||+++...++|..+++.|+..-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            33334455667777877554 33445678899999999999999999999999999999997543

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.76  E-value=0.83  Score=36.87  Aligned_cols=140  Identities=17%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHH
Q 029315           43 LFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF  122 (195)
Q Consensus        43 ~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~  122 (195)
                      ...+....+..++.++......+...++. .+.......-...+... ..... ..+..  .......++-+........
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~   79 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESL-DPFLFAAALRFLIAALL-LLPLL-LLEPR--GLRPALRPWLLLLLLALLG   79 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc-CChHHHHHHHHHHHHHH-HHHHH-Hhhcc--cccccccchHHHHHHHHHH
Confidence            34667777778888888888877777552 23222222112222222 11111 01100  0000000111112222333


Q ss_pred             HHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH-HhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF-IFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       123 ~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~-~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      ...+..+....+++.+........+.+++++.++++ ++++|+++...+.|..+.+.|+.+-....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~  145 (292)
T COG0697          80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGG  145 (292)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCC
Confidence            344446666668888888888899999999999997 66799999999999999899987776644

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=95.46  E-value=0.51  Score=40.71  Aligned_cols=55  Identities=13%  Similarity=0.012  Sum_probs=49.8

Q ss_pred             HHhhhhhhcccchhhHHHHHHHHHHHHHHHHHh------cCCCCchhhHHHHHHHhhhhhe
Q 029315          128 ILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF------EGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       128 ~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~l------fg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      .+...-++|.++...+...+..++++.++++++      ++|+++...++|..+-+.|+.+
T Consensus        93 ~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~l  153 (358)
T PLN00411         93 ITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALV  153 (358)
T ss_pred             HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHH
Confidence            356678899999999999999999999999999      6999999999999999888643

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.44  E-value=0.066  Score=36.99  Aligned_cols=56  Identities=13%  Similarity=0.039  Sum_probs=31.5

Q ss_pred             HHHHHhhHHhhhhhhcccchhhHH-HHHHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 029315          121 IFNSLGGILVGLVTSHAGGVRKGF-VIVSALLVTAMLQFIFEGKPPSLYCLIALPLV  176 (195)
Q Consensus       121 ~~~a~gg~~v~~vlk~~~~i~k~~-~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV  176 (195)
                      ....+.-.+.+..+|+.|-...-. .+....+.+.+++.++|||++|...++|..++
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            334444477788888877666633 56789999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.06  E-value=0.82  Score=39.10  Aligned_cols=59  Identities=14%  Similarity=0.238  Sum_probs=51.5

Q ss_pred             hhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315          126 GGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ  184 (195)
Q Consensus       126 gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~  184 (195)
                      +=.++...++|.+-.......+.+++++.++|+++++++.++..++|..+++.|+-+-.
T Consensus        92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~  150 (334)
T PF06027_consen   92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV  150 (334)
T ss_pred             HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence            44666688889888888889999999999999999999999999999999999965433

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=94.12  E-value=0.36  Score=39.36  Aligned_cols=67  Identities=18%  Similarity=0.128  Sum_probs=57.0

Q ss_pred             HHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       121 ~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      +.-++.-.+.-..+++.|..+-....-..++.|+++++++++.+++..++++..+..+|+.+.+..+
T Consensus        25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence            3344444555578899999998889999999999999999999999999999999999988777654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=93.95  E-value=0.96  Score=38.86  Aligned_cols=135  Identities=21%  Similarity=0.222  Sum_probs=78.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC-CchHHHHHHHHHHHHH--HhhhhhhccCCchhhhhcccccccchhhHH
Q 029315           42 ILFYGIVPVLVASVLSGLASALCQWASQVKK-HSSYLMTIEMSIVGSL--CLLASISKSPDGEAIRQHGFFYGWTPLTLI  118 (195)
Q Consensus        42 ~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~-~~~~~~n~~l~~~~~l--~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~  118 (195)
                      +...|++..+++++++|--.+=++| .|+-+ ++.|.  .+-. +..+  +........++..+.     ++..++..+.
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~--v~gi-~~wl~~~~~~g~~~~~~f~~~-----~~~~~~~~~~   74 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWS--VGGI-FSWLILPWLIAALLLPDFWAY-----YSSFSGSTLL   74 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHH--HHHH-HHHHHHHHHHHHHHhhhHHHH-----HHhcCHHHHH
Confidence            5678999999999999875555444 44443 23333  1111 1111  111122222222211     1223444443


Q ss_pred             HHHH----HHHhhHHhhhhhhcccchhhH-HHHHHHHHHHHHHHHHhcCCCC-------chhhHHHHHHHhhhhheecc
Q 029315          119 PVIF----NSLGGILVGLVTSHAGGVRKG-FVIVSALLVTAMLQFIFEGKPP-------SLYCLIALPLVVSSISIYQK  185 (195)
Q Consensus       119 ~v~~----~a~gg~~v~~vlk~~~~i~k~-~~~~~siv~s~lls~~lfg~~~-------t~~~~~G~~lV~~s~~ly~~  185 (195)
                      ..+.    =++|++.....+||.+-.+.- .++.+.+++++++..++|||=.       ....++|.++++.|+.+-.+
T Consensus        75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3222    244778888889997765544 4778888999999999997422       24567888888888766554

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=93.64  E-value=1.7  Score=36.30  Aligned_cols=128  Identities=20%  Similarity=0.138  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccCCCch-HHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHH
Q 029315           45 YGIVPVLVASVLSGLASALCQWASQVKKHSS-YLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFN  123 (195)
Q Consensus        45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~-~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~  123 (195)
                      -|++..+.+.+++|+.-.|...+-.-....+ ..|-+.    +..+..+.....+++++..+    ..-++..+......
T Consensus         7 ~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviw----S~~~~l~ll~~~r~~~~~~~----~~~~p~~~~~~~l~   78 (293)
T COG2962           7 KGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIW----SFPFMLALLFLLRQWRELKQ----LLKQPKTLLMLALT   78 (293)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHH----HHhCcHHHHHHHHH
Confidence            5999999999999997777766543332222 223322    32222222223345444322    12233334333222


Q ss_pred             HH--hh--HHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhh
Q 029315          124 SL--GG--ILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSI  180 (195)
Q Consensus       124 a~--gg--~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~  180 (195)
                      +.  ++  .+.-+.+.....+-.+.-=..-+.++.+++.++++|+++..+++...+-.+|+
T Consensus        79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV  139 (293)
T COG2962          79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGV  139 (293)
T ss_pred             HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            22  21  33335555555556666667888999999999999999999999998887775

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.57  E-value=0.053  Score=45.71  Aligned_cols=79  Identities=16%  Similarity=0.120  Sum_probs=64.2

Q ss_pred             chhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhh-eeccCCCccc
Q 029315          113 TPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSIS-IYQKYPYQVK  191 (195)
Q Consensus       113 ~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~-ly~~~~~~~~  191 (195)
                      .+++|.=++.-.+|-+.--...-++..++..+..+++++.+++++..+.+|.++..-.+|..+.+.|.+ +....|++++
T Consensus        64 ~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~  143 (335)
T KOG2922|consen   64 EPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE  143 (335)
T ss_pred             hHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence            355566667777776666678889999999999999999999999999999999999999999998864 4444454433

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=93.09  E-value=2.7  Score=31.14  Aligned_cols=131  Identities=14%  Similarity=0.166  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHh
Q 029315           47 IVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLG  126 (195)
Q Consensus        47 ~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~g  126 (195)
                      .++.+++-.+.++.+..+-+.-|+.+ +.+.-+..-+..|.+...+.....++. +.   .-..+.+++.|.-=...+..
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~---~~~~~~p~w~~lGG~lG~~~   77 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SL---ASLSSVPWWAYLGGLLGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-cc---chhccCChHHhccHHHHHHH
Confidence            34566666777777888888877665 345545444555654444433333332 11   11223444444322222222


Q ss_pred             hHHhhhhhhcccchh-hHHHHHHHHHHHHHHHHH-hc---CCCCchhhHHHHHHHhhhhhe
Q 029315          127 GILVGLVTSHAGGVR-KGFVIVSALLVTAMLQFI-FE---GKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       127 g~~v~~vlk~~~~i~-k~~~~~~siv~s~lls~~-lf---g~~~t~~~~~G~~lV~~s~~l  182 (195)
                      -.+....++..+... ........++.+.+++.+ +|   ..+++...++|..+++.|+++
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            233334444433333 333455566677777775 33   489999999999999998764

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=92.30  E-value=0.22  Score=36.26  Aligned_cols=30  Identities=17%  Similarity=0.309  Sum_probs=26.5

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCCCC
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGS   30 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~   30 (195)
                      ++||++|..||.++.++++|++.+...+.+
T Consensus        78 ~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~  107 (120)
T PRK10452         78 LFDESLSLMKIAGLTTLVAGIVLIKSGTRK  107 (120)
T ss_pred             HhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence            379999999999999999999999876643

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=88.92  E-value=0.74  Score=32.67  Aligned_cols=66  Identities=21%  Similarity=0.189  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhhHHhhhhhhcccchhhH-HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315          117 LIPVIFNSLGGILVGLVTSHAGGVRKG-FVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI  182 (195)
Q Consensus       117 ~~~v~~~a~gg~~v~~vlk~~~~i~k~-~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l  182 (195)
                      |+..+.|-+|-.+.-+.+.+++-.... +.++++..++.+.+..+-.+.+....++|+.++++|+++
T Consensus        56 ~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L  122 (125)
T KOG4831|consen   56 LIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL  122 (125)
T ss_pred             HHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence            566777777766666777776655443 478889999999999998899999999999999999875

>TIGR00803 nst UDP-galactose transporter

Probab=88.66  E-value=3  Score=32.97  Aligned_cols=73  Identities=19%  Similarity=0.164  Sum_probs=52.2

Q ss_pred             CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCC-----------CCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 029315            2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSK-----------RSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQV   70 (195)
Q Consensus         2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~-----------~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~   70 (195)
                      .+||++..|+.+..+++.|++...+++.+..           .+.++..++.+..|.....+.+++.+...-+.+..+++
T Consensus        26 ~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e  105 (222)
T TIGR00803        26 AGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSGFAGVYFE  105 (222)
T ss_pred             cceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence            5899999999999999999998777554321           00111222345568888888888888888888888887


Q ss_pred             CCCc
Q 029315           71 KKHS   74 (195)
Q Consensus        71 ~~~~   74 (195)
                      +..+
T Consensus       106 ~~~k  109 (222)
T TIGR00803       106 KILK  109 (222)
T ss_pred             Hccc
Confidence            7543

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=88.56  E-value=15  Score=31.62  Aligned_cols=56  Identities=11%  Similarity=0.164  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHhc----CCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 029315            8 MQQIVAVFLLILAAVFLSI----GEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQ   65 (195)
Q Consensus         8 ~~qw~al~ll~~Gv~~~~~----~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e   65 (195)
                      ..-..++++..+|+++...    .+.+.+  .++..+.+.--|+..++++.+.++......+
T Consensus       135 ~~~~~gv~liliGi~l~s~Ag~~k~~~~~--~~~~~~~~~~KGi~ialisgi~~~~f~~~~~  194 (345)
T PRK13499        135 RMTLLGVLVALIGVAIVGRAGQLKERKMG--IKKAEEFNLKKGLILAVMSGIFSACFSFAMD  194 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccc--cccccccchHhHHHHHHHHHHHHHHHHHHHh
Confidence            4456788999999999987    433221  1112345777899999999998888773333

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.41  E-value=17  Score=30.84  Aligned_cols=136  Identities=13%  Similarity=-0.014  Sum_probs=85.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHH--HHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH
Q 029315           42 ILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYL--MTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP  119 (195)
Q Consensus        42 ~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~--~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~  119 (195)
                      ...-.+..++..|++|.+..+.+..++.+++-|-..  .-.|.-... +...+.-.     ..+.+...++--....|.+
T Consensus         9 ~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~-~~v~~lk~-----~~lv~~~~l~~~~~kk~~P   82 (314)
T KOG1444|consen    9 KQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASV-LVVLVLKR-----LGLVNFRPLDLRTAKKWFP   82 (314)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HHHHHHHH-----hceeecCCcChHHHHHHcc
Confidence            334567888999999999999999999888654333  235532222 22222110     0001111111111223332


Q ss_pred             H----HHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315          120 V----IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       120 v----~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                      +    ..+...|.   ..+||.+--+-...--.+++++++.+.++||..++...+.......++...+...
T Consensus        83 ~~~lf~~~i~t~~---~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~  150 (314)
T KOG1444|consen   83 VSLLFVGMLFTGS---KSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFT  150 (314)
T ss_pred             HHHHHHHHHHHcc---ccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccc
Confidence            2    22233344   6788888777777788899999999999999999999999998888887766543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=83.36  E-value=9.8  Score=32.64  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=78.2

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhccCC-CchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH
Q 029315           41 HILFYGIVPVLVASVLSGLASALCQWASQVKK-HSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP  119 (195)
Q Consensus        41 ~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~-~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~  119 (195)
                      .+.+.|++...++++++|...+=.+|+ |+-+ ++.|...-..+. -.+|........+|..++.+     ..+..++..
T Consensus         3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~sw-li~P~~~a~l~ip~~~~i~~-----~~~~~~l~~   75 (344)
T PF06379_consen    3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSW-LIVPWLWALLAIPDFFSIYS-----ATPASTLFW   75 (344)
T ss_pred             chHHHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHH-HHHHHHHHHHhCCcHHHHHH-----hCChhHHHH
Confidence            356789999999999888755443333 2221 233432211121 22344333334556544332     222222222


Q ss_pred             -HHHH---HHhhHHhhhhhhcccchh-hHHHHHHHHHHHHHHHHHhcC-------CCCchhhHHHHHHHhhhhheeccC
Q 029315          120 -VIFN---SLGGILVGLVTSHAGGVR-KGFVIVSALLVTAMLQFIFEG-------KPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       120 -v~~~---a~gg~~v~~vlk~~~~i~-k~~~~~~siv~s~lls~~lfg-------~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                       .+..   .+||+..+..+||.+-.+ -+++.-+..++.+++..++.|       .+-....++|.++++.++.+-.+.
T Consensus        76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A  154 (344)
T PF06379_consen   76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA  154 (344)
T ss_pred             HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence             2233   348999999999976443 344555566666666555533       333457888999998888776654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=82.25  E-value=17  Score=30.12  Aligned_cols=66  Identities=15%  Similarity=0.075  Sum_probs=45.6

Q ss_pred             HHhhHHhhhhhhcccchhhHH-HHHHHHHHHHHHHHHhcCCCCchhhH----HHHHHHhhhhheeccCCCc
Q 029315          124 SLGGILVGLVTSHAGGVRKGF-VIVSALLVTAMLQFIFEGKPPSLYCL----IALPLVVSSISIYQKYPYQ  189 (195)
Q Consensus       124 a~gg~~v~~vlk~~~~i~k~~-~~~~siv~s~lls~~lfg~~~t~~~~----~G~~lV~~s~~ly~~~~~~  189 (195)
                      ++|.+.--..+|+.+-.+.-+ .+...++.+.+.++++|||-.+....    ++.++++.|+++-+..+++
T Consensus        56 ~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~  126 (269)
T PF06800_consen   56 AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK  126 (269)
T ss_pred             HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence            335555556667766655544 67889999999999999987765443    3667778887766655433

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.96
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.88
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	90.95

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.96  E-value=9e-06  Score=59.56  Aligned_cols=69  Identities=13%  Similarity=0.093  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhHHhhhhhhcccchhhHHH-HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315          118 IPVIFNSLGGILVGLVTSHAGGVRKGFV-IVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY  186 (195)
Q Consensus       118 ~~v~~~a~gg~~v~~vlk~~~~i~k~~~-~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~  186 (195)
                      +.++..++.-.+....+|+.+....... +.++++++.++++++|||+++...++|+.+|+.|+++....
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3445556666788899999999988776 89999999999999999999999999999999999877654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.88  E-value=6.2e-05  Score=52.92  Aligned_cols=69  Identities=13%  Similarity=0.117  Sum_probs=58.5

Q ss_pred             HHHHHHHhhHHhhhhhhcccchhhHHH-HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315          119 PVIFNSLGGILVGLVTSHAGGVRKGFV-IVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP  187 (195)
Q Consensus       119 ~v~~~a~gg~~v~~vlk~~~~i~k~~~-~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~  187 (195)
                      .+....+.-.+.+..+|+.|....... ...+++++.++++++|||+++...++|..+++.|+.+-...+
T Consensus        36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344445555777889999999888776 899999999999999999999999999999999998776644

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=90.95  E-value=0.06  Score=39.01  Aligned_cols=28  Identities=14%  Similarity=0.353  Sum_probs=18.7

Q ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhcCC
Q 029315            1 MCRQRQSMQQIVAVFLLILAAVFLSIGE   28 (195)
Q Consensus         1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~   28 (195)
                      ++||++|..||.++.+..+|++++...+
T Consensus        78 ~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           78 FFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3799999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00