Citrus Sinensis ID: 029320
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 195 | ||||||
| 224099471 | 215 | predicted protein [Populus trichocarpa] | 0.979 | 0.888 | 0.663 | 6e-65 | |
| 224111518 | 215 | predicted protein [Populus trichocarpa] | 0.979 | 0.888 | 0.653 | 1e-64 | |
| 225424195 | 231 | PREDICTED: uncharacterized protein At1g6 | 0.969 | 0.818 | 0.578 | 2e-60 | |
| 351721833 | 207 | uncharacterized protein LOC547691 [Glyci | 0.979 | 0.922 | 0.601 | 1e-54 | |
| 356575554 | 212 | PREDICTED: uncharacterized protein At1g6 | 0.979 | 0.900 | 0.586 | 4e-52 | |
| 255570090 | 223 | conserved hypothetical protein [Ricinus | 0.825 | 0.721 | 0.567 | 1e-51 | |
| 449445353 | 215 | PREDICTED: uncharacterized protein At1g6 | 0.989 | 0.897 | 0.563 | 8e-51 | |
| 30677912 | 215 | uncharacterized protein [Arabidopsis tha | 0.974 | 0.883 | 0.553 | 2e-49 | |
| 297814370 | 210 | hypothetical protein ARALYDRAFT_322480 [ | 0.969 | 0.9 | 0.549 | 5e-48 | |
| 388514537 | 210 | unknown [Medicago truncatula] gi|4005404 | 0.979 | 0.909 | 0.562 | 2e-46 |
| >gi|224099471|ref|XP_002311497.1| predicted protein [Populus trichocarpa] gi|222851317|gb|EEE88864.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 252 bits (643), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 136/205 (66%), Positives = 156/205 (76%), Gaps = 14/205 (6%)
Query: 1 MKITGETFKIKTPVKAGEVVKDYPGHVLLESESVKHYGVRAKPLGAEQNLEAKRLYFLVE 60
MKI GETFK KTPVKAG+VVKDYPGHVLLESE+VKHYG+RAKPL A Q+L KRLYFLVE
Sbjct: 14 MKINGETFKFKTPVKAGDVVKDYPGHVLLESEAVKHYGIRAKPLEAHQDLVPKRLYFLVE 73
Query: 61 LPDVARKEIVPRRVRSGINMSAKDRLESLKLSRRSVSDLSILKPVSSSSSSLPEEGAMRL 120
LP+ E VPRRVRSGINMSAKDRLESL LSRRS SDLSI+KP SS S + GAMR+
Sbjct: 74 LPETP-TERVPRRVRSGINMSAKDRLESLMLSRRSTSDLSIMKP-SSIVSEEAKRGAMRV 131
Query: 121 KLKLPKAEVEKLMRESNNDAEIAEKIRELCMA---------KQIHWNNNNNNNNGGGNQG 171
K++LPK +VEKLM+ES ++AE A KI +LCMA +Q+HW + + GNQG
Sbjct: 132 KMRLPKEQVEKLMQESKDEAEAAAKILDLCMANTAGESGLSQQVHWKSGGHGRV--GNQG 189
Query: 172 -FKAREKRVSFMPICEGGNQITVAS 195
KAREKRVSF+P EG QI VAS
Sbjct: 190 IIKAREKRVSFLPFSEGEMQIAVAS 214
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111518|ref|XP_002315887.1| predicted protein [Populus trichocarpa] gi|222864927|gb|EEF02058.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225424195|ref|XP_002284189.1| PREDICTED: uncharacterized protein At1g66480 [Vitis vinifera] gi|297737714|emb|CBI26915.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|351721833|ref|NP_001236455.1| uncharacterized protein LOC547691 [Glycine max] gi|21700771|gb|AAG38147.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|356575554|ref|XP_003555905.1| PREDICTED: uncharacterized protein At1g66480-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255570090|ref|XP_002526007.1| conserved hypothetical protein [Ricinus communis] gi|223534654|gb|EEF36347.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449445353|ref|XP_004140437.1| PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|30677912|ref|NP_178243.2| uncharacterized protein [Arabidopsis thaliana] gi|62867641|gb|AAY17424.1| At2g01340 [Arabidopsis thaliana] gi|94442481|gb|ABF19028.1| At2g01340 [Arabidopsis thaliana] gi|110741090|dbj|BAE98639.1| hypothetical protein [Arabidopsis thaliana] gi|330250344|gb|AEC05438.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297814370|ref|XP_002875068.1| hypothetical protein ARALYDRAFT_322480 [Arabidopsis lyrata subsp. lyrata] gi|297320906|gb|EFH51327.1| hypothetical protein ARALYDRAFT_322480 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|388514537|gb|AFK45330.1| unknown [Medicago truncatula] gi|400540407|gb|AFP87383.1| unknown [Medicago sativa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 195 | ||||||
| TAIR|locus:2038776 | 215 | At17.1 "AT2G01340" [Arabidopsi | 0.969 | 0.879 | 0.565 | 4.2e-47 | |
| TAIR|locus:504956263 | 195 | AT1G71015 "AT1G71015" [Arabido | 0.758 | 0.758 | 0.596 | 7.5e-41 | |
| TAIR|locus:2028942 | 225 | AT1G66480 "AT1G66480" [Arabido | 0.974 | 0.844 | 0.463 | 8.3e-35 | |
| TAIR|locus:2156035 | 214 | AT5G37840 "AT5G37840" [Arabido | 0.969 | 0.883 | 0.428 | 1.4e-30 |
| TAIR|locus:2038776 At17.1 "AT2G01340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 117/207 (56%), Positives = 141/207 (68%)
Query: 1 MKITGETFKIKTPVKAGEVVKDYPGHVLLESESVKHYGVRAKPLGAEQNLEAKRLYFLVE 60
MKI GETFK+KTPV A EV+KD+PGHVLL+SESVKHYG RAKPL A+Q LEAKRLYF+VE
Sbjct: 14 MKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAKQRLEAKRLYFVVE 73
Query: 61 LPDVARKEIVPRRVRSGINMSAKDRLESLKLSRRSVSDLSILKPVXXXXXXLPEEGAMR- 119
P KE PRRVRSGI++SAK+RLESL L+RRS SDLSILKP EEGA+R
Sbjct: 74 -PV---KECPPRRVRSGIHVSAKERLESLMLARRSSSDLSILKPPGGWTTE-EEEGAVRR 128
Query: 120 LKLKLPKAEVEKLMRESNNDAEIAEKIRELCMAKQIHW------------XXXXXXXXXX 167
+K+++PKAE+EKL++E +AE +KI L MAKQ
Sbjct: 129 VKVRIPKAELEKLVKEGATEAEATQKIAALFMAKQRQEEAYQNTRQDEPATTATATATTT 188
Query: 168 XXQGFKAREKRVSFMPICEGGNQITVA 194
+G K+R KRVSFM GG++ITVA
Sbjct: 189 ATRGVKSRLKRVSFMAERGGGSEITVA 215
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| TAIR|locus:504956263 AT1G71015 "AT1G71015" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2028942 AT1G66480 "AT1G66480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2156035 AT5G37840 "AT5G37840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| fgenesh4_pm.C_LG_VIII000553 | hypothetical protein (215 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 195 | |||
| pfam14009 | 181 | pfam14009, DUF4228, Domain of unknown function (DU | 5e-19 |
| >gnl|CDD|222492 pfam14009, DUF4228, Domain of unknown function (DUF4228) | Back alignment and domain information |
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Score = 79.7 bits (197), Expect = 5e-19
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 5 GETFKIKTPVKAGEVVKDYPGHVLLESESVKHYGVRAKPLGAEQNLEAKRLYFLVELPDV 64
G+ + PV A E++ +YPGH + +S+S + G R L + LE +LYFL+ +
Sbjct: 25 GKVREYSRPVTAAELMLEYPGHFVCDSDS-LYIGRRIPALPPDDELERGQLYFLLPAERL 83
Query: 65 ARKEIVPRRVRSGINMSAKDRLESLKLSRRSVSDLSILKPVSSSSSSLPEEGAMRLKLKL 124
+ + + + S + SA L+S R S S S PV S G +R+K+ +
Sbjct: 84 -QSVLAAKDMAS-LASSASSALKSASAKRSSSSRPS---PVRKSDG-----GVVRVKVVV 133
Query: 125 PKAEVEKLMRESNNDAEIAEK 145
K E+E+L+ E + A ++E
Sbjct: 134 SKEELEELLEEGSVSASLSEL 154
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This domain is found in plants. The function is not known. Length = 181 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 195 | |||
| PF14009 | 181 | DUF4228: Domain of unknown function (DUF4228) | 99.93 |
| >PF14009 DUF4228: Domain of unknown function (DUF4228) | Back alignment and domain information |
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Probab=99.93 E-value=9e-26 Score=176.07 Aligned_cols=134 Identities=27% Similarity=0.486 Sum_probs=94.4
Q ss_pred CccccceEEeeccchHhHHhhhCCCceeeccccccccceecccCCCcccccCCceEEEEecCCCcccCCCcccccccCCC
Q 029320 1 MKITGETFKIKTPVKAGEVVKDYPGHVLLESESVKHYGVRAKPLGAEQNLEAKRLYFLVELPDVARKEIVPRRVRSGINM 80 (195)
Q Consensus 1 MklDG~V~E~k~PitA~eVl~d~PgHvL~~S~sv~~~Gvr~kpL~pd~eL~~GklYFLvPlp~~~~~~~~~rrvrsgi~~ 80 (195)
|..||+|++|+.||+|+|||.+||+|+|+++... ++|.++.||+||++|++|++|||||++..... ..... -..+..
T Consensus 21 v~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~~-~~~~~~~~l~~d~~L~~G~~Y~llP~~~~~~~-~~~~~-~~~~~~ 97 (181)
T PF14009_consen 21 VHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDSF-RFGRRIKPLPPDEELQPGQIYFLLPMSRLQSV-LSASD-MASLAS 97 (181)
T ss_pred EcCCCcEEEeCCCcCHHHHHHHCCCCEEeccccc-cCCCcccCCCccCeecCCCEEEEEEccccCcc-cccch-hccccc
Confidence 4689999999999999999999999999988754 67889999999999999999999999886632 11111 111122
Q ss_pred chhhHHHhhhhcccccCcccccCCCCCCCCCCCCCCeeEEEEeecHHHHHHHHHhcCChHHHHHH
Q 029320 81 SAKDRLESLKLSRRSVSDLSILKPVSSSSSSLPEEGAMRLKLKLPKAEVEKLMRESNNDAEIAEK 145 (195)
Q Consensus 81 ~a~eRle~l~lsrRs~sd~s~~~~~~~~~~~~~~~g~vRvKmrLpKaelekLm~es~d~~eaaek 145 (195)
.+.+.+........+.++++ ......+|.+|+|++++|+|++++++++.+....++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~rvki~isk~el~~~l~~~s~~~~~~~~ 154 (181)
T PF14009_consen 98 SASSASSSSSARKSSSRPFS--------RSRSSNGGVVRVKIVISKEELEELLSEGSDEEMLSES 154 (181)
T ss_pred chhhcccccccccccccccc--------ccccccCcccccccccCHHHHHHHHhccccchhhhhh
Confidence 23333322222222222221 1123467899999999999999999987555554443
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 195 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 44.1 bits (103), Expect = 1e-05
Identities = 31/211 (14%), Positives = 58/211 (27%), Gaps = 74/211 (35%)
Query: 1 MKITGETFKIKTPVKAGEVVKDY------PGHVLLESESVKHY---GVRAKPLGAEQNLE 51
+ +G KT A +V Y + + P + L+
Sbjct: 158 VLGSG-----KT-WVALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEMLQ 203
Query: 52 AKRLYFLVELPDVARKEIVPRRVRSGINMSAKDRLESLKLSR---------RSVSDLSIL 102
+L + ++ +R + ++ I+ S + L L S+ +V +
Sbjct: 204 --KLLYQIDPNWTSRSDH-SSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 103 K-----------------------------PVSSSSSSLPEEGAMRLKLKLPKAEVEKLM 133
+ S +L + L LK + L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 134 RESNND-----AEIAEKIRELCMAKQIHWNN 159
RE + IAE IR+ W+N
Sbjct: 320 REVLTTNPRRLSIIAESIRD----GLATWDN 346
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| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00