Citrus Sinensis ID: 029327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MRLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDGKW
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHccccHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHccEEEEEEEcccEEEEHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHcccccHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccEEEcHHHHHHHHHHccccccEEEEEEccccEccccccEEEcccHHHcccccc
Coil and Loop (DISEMBL)
MRLSAIEMDLAAARQEGFvsgylsqndtqhskKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGrsanhgdsfdteidsensqtndfiilddHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALsshldkprvyigcmksgevfseptqrwyepdwwkfgdgkw
Flexible Loop (DISEMBL)
MRLSAIEMDLAAARQEGFVSGYLSqndtqhskkrhLAVIGiittfgrkknrDAIREAWMSTGAAlrelqdnkGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKsgevfseptqrwyepdwwkfgdgkw
Low Complexity Region (SEG)
MRLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDGKW
Disordered region (IsUnstruct)
*********************************RHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSA******************DFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFG****
Disordered Region (DISOPRED)
*RLSAIEMDLAA***********************LAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDGKW
Disordered Region (DISEMBL)
MRLSAIEMDLAAARQEGFVSGYLS*********RHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDGKW
Disordered Region (DISPRO)
*******************************KKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDGK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDGKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q94F27	338	Probable beta-1,3-galacto	yes	no	0.984	0.568	0.645	2e-73
Q94A05	345	Probable beta-1,3-galacto	no	no	0.969	0.547	0.492	2e-49
Q5XEZ1	346	Probable beta-1,3-galacto	no	no	0.969	0.546	0.492	6e-48
Q9ZV71	409	Probable beta-1,3-galacto	no	no	0.969	0.462	0.489	8e-46
A8MRC7	407	Probable beta-1,3-galacto	no	no	0.969	0.464	0.474	3e-45
Q9SAA4	384	Probable beta-1,3-galacto	no	no	0.964	0.489	0.455	6e-43
Q9LM60	398	Probable beta-1,3-galacto	no	no	0.969	0.474	0.468	1e-42
Q9MAP8	399	Probable beta-1,3-galacto	no	no	0.969	0.473	0.428	4e-42
Q8LEJ9	407	Probable beta-1,3-galacto	no	no	0.969	0.464	0.454	3e-41
Q9C809	395	Probable beta-1,3-galacto	no	no	0.969	0.478	0.447	5e-41

>sp|Q94F27|B3GTB_ARATH Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1

 Score =  275 bits (702), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 155/192 (80%)

Query: 3   LSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMSTG 62
           L+A+EM+L++ARQEGFVS      D   +KKR L VIGI+T+ G KK RDA+R+AWM TG
Sbjct: 78  LAALEMELSSARQEGFVSKSPKLADGTETKKRPLVVIGIMTSLGNKKKRDAVRQAWMGTG 137

Query: 63  AALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMK 122
           A+L++L+  KG++ RFVIGRSAN GDS D  ID+ENSQT+DFIILDD VEAPEE +KK+K
Sbjct: 138 ASLKKLESEKGVIARFVIGRSANKGDSMDKSIDTENSQTDDFIILDDVVEAPEEASKKVK 197

Query: 123 SFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRW 182
            FF +A ++WDA+FY K  D++YVNIDALG  L++HL+ PR YIGCMKSGEVFSEP  +W
Sbjct: 198 LFFAYAADRWDAQFYAKAIDNIYVNIDALGTTLAAHLENPRAYIGCMKSGEVFSEPNHKW 257

Query: 183 YEPDWWKFGDGK 194
           YEP+WWKFGD K
Sbjct: 258 YEPEWWKFGDKK 269

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp|Q94A05|B3GTA_ARATH Probable beta-1,3-galactosyltransferase 10 OS=Arabidopsis thaliana GN=B3GALT10 PE=2 SV=1

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 131/193 (67%), Gaps = 4/193 (2%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           R+   EM+LA A+ +G++     Q     S K+ LAVIG+ T FG    R+  R +WM  
Sbjct: 88  RIVETEMELAQAKSQGYLK---KQKSVSSSGKKMLAVIGVYTGFGSHLKRNKFRGSWMPR 144

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
             AL++L++ +G+V+RFVIGRSAN GDS D +ID EN  T DF+IL++H EA EEL KK+
Sbjct: 145 DDALKKLEE-RGVVIRFVIGRSANRGDSLDRKIDEENRATKDFLILENHEEAQEELPKKV 203

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           K F+  AV+ WDAEFY KV+D+V ++++ + A L S   +   YIGCMKSG+V +E   +
Sbjct: 204 KFFYSAAVQNWDAEFYVKVDDNVDLDLEGMIALLESRRSQDGAYIGCMKSGDVITEEGSQ 263

Query: 182 WYEPDWWKFGDGK 194
           WYEP+WWKFGD K
Sbjct: 264 WYEPEWWKFGDDK 276

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q5XEZ1|B3GT9_ARATH Probable beta-1,3-galactosyltransferase 9 OS=Arabidopsis thaliana GN=B3GALT9 PE=2 SV=1

 Score =  190 bits (482), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 130/193 (67%), Gaps = 4/193 (2%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           R+   EM+L  A+ +G++    S +    S K+ LAVIG+ + FG    R+  R ++M  
Sbjct: 89  RIVETEMELTLAKSQGYLKNLKSGS---SSGKKLLAVIGVYSGFGSHLRRNTFRGSYMPQ 145

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           G ALR+L++ +GIV+RFVIGRS N GDS D +ID EN    DF+IL++H EA EELAKK+
Sbjct: 146 GDALRKLEE-RGIVIRFVIGRSPNRGDSLDRKIDEENQARKDFLILENHEEAQEELAKKV 204

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           K FF  AV+ WDAEFY KV+D++ ++++ L   L S   +   YIGCMKSGEV +E   +
Sbjct: 205 KFFFSAAVQNWDAEFYIKVDDNIDLDLEGLIGLLESRRGQDAAYIGCMKSGEVVAEEGGK 264

Query: 182 WYEPDWWKFGDGK 194
           WYEP+WWKFGD K
Sbjct: 265 WYEPEWWKFGDEK 277

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZV71|B3GT3_ARATH Probable beta-1,3-galactosyltransferase 3 OS=Arabidopsis thaliana GN=B3GALT3 PE=2 SV=1

 Score =  182 bits (463), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 132/196 (67%), Gaps = 7/196 (3%)

Query: 3   LSAIEMDLAAAR--QEGFVSGYLSQNDTQH----SKKRHLAVIGIITTFGRKKNRDAIRE 56
           +S++EM+LAAAR  QE  V+G    ND +      K+R+L V+GI T F  +K RD++R 
Sbjct: 102 ISSLEMELAAARSAQESLVNGAPISNDMEKKQLPGKRRYLMVVGINTAFSSRKRRDSVRT 161

Query: 57  AWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEE 116
            WM +G   ++L++ KGI++RFVIG SA  G   D  I++E+ +  DF+ LD HVE   E
Sbjct: 162 TWMPSGEKRKKLEEEKGIIIRFVIGHSATAGGILDRSIEAEDKKHGDFLRLD-HVEGYLE 220

Query: 117 LAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176
           L+ K K++F  AV KWDAEFY KV+DDV+VNI  LG  L  H  K RVY+GCMKSG V S
Sbjct: 221 LSGKTKTYFSTAVSKWDAEFYVKVDDDVHVNIATLGETLVRHRKKHRVYLGCMKSGPVLS 280

Query: 177 EPTQRWYEPDWWKFGD 192
           +   R++EP++WKFG+
Sbjct: 281 QKGVRYHEPEYWKFGE 296

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|A8MRC7|B3GT2_ARATH Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1

 Score =  181 bits (459), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 126/196 (64%), Gaps = 7/196 (3%)

Query: 3   LSAIEMDLAAAR--QEGFVSGYLSQNDT----QHSKKRHLAVIGIITTFGRKKNRDAIRE 56
           +S++EM+LAAAR  QE   +G    +D        ++R L V+GI T F  +K RD+IR 
Sbjct: 100 ISSLEMELAAARSVQESLQNGAPLSDDMGKKQPQEQRRFLMVVGINTAFSSRKRRDSIRA 159

Query: 57  AWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEE 116
            WM  G   + L++ KGI++RFVIG SA  G   D  I++E+ +  DF+ LD HVE   E
Sbjct: 160 TWMPQGEKRKRLEEEKGIIIRFVIGHSATTGGILDRAIEAEDRKHGDFLRLD-HVEGYLE 218

Query: 117 LAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176
           L+ K K++F  A   WDA+FY KV+DDV+VNI  LG  L  H  KPRVYIGCMKSG V S
Sbjct: 219 LSGKTKTYFSTAFSMWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLS 278

Query: 177 EPTQRWYEPDWWKFGD 192
           +   R++EP++WKFG+
Sbjct: 279 QKGVRYHEPEYWKFGE 294

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SAA4|B3GT1_ARATH Probable beta-1,3-galactosyltransferase 1 OS=Arabidopsis thaliana GN=B3GALT1 PE=2 SV=2

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 127/191 (66%), Gaps = 3/191 (1%)

Query: 3   LSAIEMDLAAARQEG-FVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           +S +EM L AAR E   +SG  + ++ +  K+++  VIGI T F  +K RD++R  WM  
Sbjct: 83  ISNLEMKLVAARAERESLSGKFNISN-EAKKRKYFMVIGINTAFSSRKRRDSVRSTWMPQ 141

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           G  L++L++ KGI+VRFVIG S       D  I++E     DF+ L+ H E   +L+ K 
Sbjct: 142 GENLKKLEEEKGIIVRFVIGHSVLSHGILDKAIEAEEKTHGDFLRLE-HTEGYMKLSAKT 200

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           K+FF  AV  WDAEFY KV+DDV+VN+ +L  ALS+H +KPRVY+GCMKSG V +  + +
Sbjct: 201 KTFFATAVSLWDAEFYIKVDDDVHVNLASLKKALSAHQNKPRVYVGCMKSGPVLARKSVK 260

Query: 182 WYEPDWWKFGD 192
           ++EP++WKFG+
Sbjct: 261 YHEPEYWKFGE 271

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LM60|B3GT5_ARATH Probable beta-1,3-galactosyltransferase 5 OS=Arabidopsis thaliana GN=B3GALT5 PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 123/192 (64%), Gaps = 3/192 (1%)

Query: 3   LSAIEMDLAAARQEGFVSGYLSQNDTQ--HSKKRHLAVIGIITTFGRKKNRDAIREAWMS 60
           +S ++  L+A      +    + N +   + K +   VIGI T F  +K RD++RE WM 
Sbjct: 92  VSMLQKQLSATHSPQQIVNVSATNSSTEGNQKNKVFMVIGINTAFSSRKRRDSLRETWMP 151

Query: 61  TGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKK 120
            G  L +L+  KGIVV+F+IG S+      D EIDSE++Q NDF  LD HVE    L+ K
Sbjct: 152 QGEKLEKLEKEKGIVVKFMIGHSSTPNSMLDKEIDSEDAQYNDFFRLD-HVEGYYNLSAK 210

Query: 121 MKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQ 180
            KSFF  AV KWDAEFY K++DDV+VN+  L + L+SH  KPRVYIGCMKSG V ++ T 
Sbjct: 211 TKSFFSSAVAKWDAEFYVKIDDDVHVNLGTLASTLASHRSKPRVYIGCMKSGPVLTKKTA 270

Query: 181 RWYEPDWWKFGD 192
           ++ EP++WKFG+
Sbjct: 271 KYREPEFWKFGE 282

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9MAP8|B3GT6_ARATH Probable beta-1,3-galactosyltransferase 6 OS=Arabidopsis thaliana GN=B3GALT6 PE=2 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/196 (42%), Positives = 126/196 (64%), Gaps = 7/196 (3%)

Query: 3   LSAIEMDLAAAR------QEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIRE 56
           +S++E++LA AR      ++G  +   +  D    + R   V+GI+T F  +K RD+IR 
Sbjct: 92  ISSLEVELATARAARSDGRDGSPAVAKTVADQSKIRPRMFFVMGIMTAFSSRKRRDSIRG 151

Query: 57  AWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEE 116
            W+  G  L+ L+  KGI++RFVIG S++ G   D  I++E  Q  DF  L+ H+E   E
Sbjct: 152 TWLPKGDELKRLETEKGIIMRFVIGHSSSPGGVLDHTIEAEEEQHKDFFRLN-HIEGYHE 210

Query: 117 LAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176
           L+ K + +F  AV KWDA+FY KV+DDV+VN+  LG+ L+ H  KPRVYIGCMKSG V +
Sbjct: 211 LSSKTQIYFSSAVAKWDADFYIKVDDDVHVNLGMLGSTLARHRSKPRVYIGCMKSGPVLA 270

Query: 177 EPTQRWYEPDWWKFGD 192
           +   +++EP++WKFG+
Sbjct: 271 QKGVKYHEPEYWKFGE 286

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8LEJ9|B3GT4_ARATH Probable beta-1,3-galactosyltransferase 4 OS=Arabidopsis thaliana GN=B3GALT4 PE=1 SV=1

 Score =  167 bits (424), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 129/196 (65%), Gaps = 7/196 (3%)

Query: 3   LSAIEMDLAAAR--QEGFVSGYLSQNDTQH----SKKRHLAVIGIITTFGRKKNRDAIRE 56
           +S +E +LA AR  QE  ++G    +D +     +K+++L V+G+ T F  +K RD++R 
Sbjct: 101 ISKLETELADARAAQESIMNGSPVSDDFKLPETVTKRKYLMVVGVNTAFSSRKRRDSVRA 160

Query: 57  AWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEE 116
            WM  G   ++L++ KGIV+RFVIG S+  G   D  I +E S+  DF+ LD HVE   E
Sbjct: 161 TWMPPGEERKKLEEEKGIVMRFVIGHSSTPGGILDRAIQAEESKHGDFLRLD-HVEGYLE 219

Query: 117 LAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176
           L+ K K++F  A   WDA+FY KV+DDV+VNI  LGA L+ +  KPRVYIGCMKSG V +
Sbjct: 220 LSAKTKTYFTTAFAMWDADFYVKVDDDVHVNIATLGAELARYRMKPRVYIGCMKSGPVLA 279

Query: 177 EPTQRWYEPDWWKFGD 192
           +   R++EP++WKFG+
Sbjct: 280 QKGVRYHEPEYWKFGE 295

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C809|B3GT8_ARATH Probable beta-1,3-galactosyltransferase 8 OS=Arabidopsis thaliana GN=B3GALT8 PE=2 SV=1

 Score =  167 bits (422), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 125/192 (65%), Gaps = 3/192 (1%)

Query: 3   LSAIEMDLAAARQEGFVSGYLSQNDTQHSKK--RHLAVIGIITTFGRKKNRDAIREAWMS 60
           +S +EM+LAAAR     S + S+   ++  +  +  AVIGI T F  KK RD++R+ WM 
Sbjct: 90  MSTLEMELAAARTSDRSSEFWSERSAKNQSRLQKVFAVIGINTAFSSKKRRDSVRQTWMP 149

Query: 61  TGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKK 120
           TG  L++++  KGIVVRFVIG SA  G   D  ID E+S+  DF+ L  H+E   +L+ K
Sbjct: 150 TGEKLKKIEKEKGIVVRFVIGHSATPGGVLDKAIDEEDSEHKDFLRLK-HIEGYHQLSTK 208

Query: 121 MKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQ 180
            + +F  A   +DAEFY KV+DDV+VN+  L   L+ +  +PR+YIGCMKSG V S+   
Sbjct: 209 TRLYFSTATAMYDAEFYVKVDDDVHVNLGMLVTTLARYQSRPRIYIGCMKSGPVLSQKGV 268

Query: 181 RWYEPDWWKFGD 192
           +++EP++WKFG+
Sbjct: 269 KYHEPEFWKFGE 280

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
224072087	344	predicted protein [Populus trichocarpa]	0.989	0.561	0.777	4e-84
356539488	343	PREDICTED: probable beta-1,3-galactosylt	0.989	0.562	0.709	5e-80
255537693	347	Beta-1,3-galactosyltransferase sqv-2, pu	0.974	0.547	0.738	5e-80
225426048	340	PREDICTED: probable beta-1,3-galactosylt	0.984	0.564	0.735	1e-79
297742294	341	unnamed protein product [Vitis vinifera]	0.984	0.563	0.735	1e-79
255545088	346	Beta-1,3-galactosyltransferase sqv-2, pu	0.989	0.557	0.709	6e-79
357481497	359	Beta 1 3-glycosyltransferase-like protei	0.989	0.537	0.657	3e-77
224116934	344	predicted protein [Populus trichocarpa]	0.989	0.561	0.663	5e-75
350536611	343	beta 1,3-glycosyltransferase-like protei	0.989	0.562	0.663	4e-74
357147629	345	PREDICTED: probable beta-1,3-galactosylt	0.989	0.559	0.637	1e-73

>gi|224072087|ref|XP_002303622.1| predicted protein [Populus trichocarpa] gi|222841054|gb|EEE78601.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (808), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 150/193 (77%), Positives = 163/193 (84%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           RLSA+EM+LAAARQ GFVS  L      HSKKR L VIGIITTFGRKKNRDAIR+AWM T
Sbjct: 83  RLSAVEMELAAARQAGFVSNKLVDKGDGHSKKRILVVIGIITTFGRKKNRDAIRKAWMPT 142

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           GAAL++++D KGIV+RFVIGRSAN GDS D EID+EN QTNDFI+LD  VEA EE  KK 
Sbjct: 143 GAALKKMEDEKGIVLRFVIGRSANRGDSLDREIDNENRQTNDFIVLDGQVEATEEQPKKS 202

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           K FF+HAVE WDAEFY KVNDDVYVNIDALGA LS+HLDKPR YIGCMKSGEVFSEPT +
Sbjct: 203 KLFFIHAVETWDAEFYAKVNDDVYVNIDALGATLSTHLDKPRTYIGCMKSGEVFSEPTHK 262

Query: 182 WYEPDWWKFGDGK 194
           WYEPDWWKFGD K
Sbjct: 263 WYEPDWWKFGDAK 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539488|ref|XP_003538230.1| PREDICTED: probable beta-1,3-galactosyltransferase 11-like [Glycine max]

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 137/193 (70%), Positives = 163/193 (84%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           +LS +EM+LAAARQEGFV   L  N  +H  K+ L V+G++TTFGRKKN++AIR+AWM T
Sbjct: 81  KLSVLEMELAAARQEGFVPKRLPGNHGKHPTKKELLVVGVMTTFGRKKNQEAIRKAWMPT 140

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           G  +R+L D KGI+VRFVIGRSAN GDS D EI++E+S TNDFIILD+ VEAPEE A K+
Sbjct: 141 GTPMRKLVDKKGIIVRFVIGRSANRGDSLDKEIETESSLTNDFIILDNQVEAPEEKANKI 200

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           KSFF++AV  WDAEFY KVNDDVYVN+DALG  L+SHLDKPRVYIGCMKSG+VFSEPT +
Sbjct: 201 KSFFIYAVSNWDAEFYAKVNDDVYVNLDALGGVLTSHLDKPRVYIGCMKSGQVFSEPTHK 260

Query: 182 WYEPDWWKFGDGK 194
           W+EPDWWKFGDGK
Sbjct: 261 WHEPDWWKFGDGK 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537693|ref|XP_002509913.1| Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis] gi|223549812|gb|EEF51300.1| Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 144/195 (73%), Positives = 162/195 (83%), Gaps = 5/195 (2%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKK--RHLAVIGIITTFGRKKNRDAIREAWM 59
           +LSA+EMDLA ARQ GF    L Q    HSKK  + LAVIGIITTFGRK+NRDAIR+AWM
Sbjct: 87  KLSAVEMDLAEARQAGFA---LKQTKDDHSKKNKKLLAVIGIITTFGRKRNRDAIRKAWM 143

Query: 60  STGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAK 119
            TGAAL++L++ KGIV+RFV+GRSAN GDS D EIDSEN Q NDFI+LD  VEA EE +K
Sbjct: 144 PTGAALKKLEEEKGIVIRFVVGRSANRGDSLDREIDSENEQKNDFIVLDGQVEATEENSK 203

Query: 120 KMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPT 179
           K KSFF+HAVE W+AEFY KVNDDV+VN D LGA LS+HLDKPRVYIGCMKSGEVFSEP 
Sbjct: 204 KTKSFFIHAVENWNAEFYVKVNDDVFVNTDVLGAILSTHLDKPRVYIGCMKSGEVFSEPN 263

Query: 180 QRWYEPDWWKFGDGK 194
            +WYEPDWWKFGDGK
Sbjct: 264 NKWYEPDWWKFGDGK 278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426048|ref|XP_002274812.1| PREDICTED: probable beta-1,3-galactosyltransferase 11-like [Vitis vinifera]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 142/193 (73%), Positives = 162/193 (83%), Gaps = 1/193 (0%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           +L+A+EM+LAAA+QEGFVS +LS+N     KK+ LAV+GIIT FGRK NRDAIR AWM T
Sbjct: 81  KLTALEMELAAAQQEGFVSNHLSENKGT-PKKKLLAVVGIITKFGRKNNRDAIRRAWMPT 139

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           G  L+ L+  KGIV+RFVIGRSAN GDS D +IDSEN QTNDFIIL++HVEAPEE  KK 
Sbjct: 140 GTDLKRLEAQKGIVIRFVIGRSANRGDSSDKDIDSENMQTNDFIILNNHVEAPEEHPKKT 199

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           K FF+HA E W+AEFY KVNDDVYVNID LGA L++HLDKPRVYIGCMKSGEVFSE T +
Sbjct: 200 KLFFIHAAENWNAEFYAKVNDDVYVNIDTLGATLATHLDKPRVYIGCMKSGEVFSESTHK 259

Query: 182 WYEPDWWKFGDGK 194
           WYEPDWWKFGDGK
Sbjct: 260 WYEPDWWKFGDGK 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742294|emb|CBI34443.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 142/193 (73%), Positives = 162/193 (83%), Gaps = 1/193 (0%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           +L+A+EM+LAAA+QEGFVS +LS+N     KK+ LAV+GIIT FGRK NRDAIR AWM T
Sbjct: 81  KLTALEMELAAAQQEGFVSNHLSENKGT-PKKKLLAVVGIITKFGRKNNRDAIRRAWMPT 139

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           G  L+ L+  KGIV+RFVIGRSAN GDS D +IDSEN QTNDFIIL++HVEAPEE  KK 
Sbjct: 140 GTDLKRLEAQKGIVIRFVIGRSANRGDSSDKDIDSENMQTNDFIILNNHVEAPEEHPKKT 199

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           K FF+HA E W+AEFY KVNDDVYVNID LGA L++HLDKPRVYIGCMKSGEVFSE T +
Sbjct: 200 KLFFIHAAENWNAEFYAKVNDDVYVNIDTLGATLATHLDKPRVYIGCMKSGEVFSESTHK 259

Query: 182 WYEPDWWKFGDGK 194
           WYEPDWWKFGDGK
Sbjct: 260 WYEPDWWKFGDGK 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545088|ref|XP_002513605.1| Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis] gi|223547513|gb|EEF49008.1| Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 137/193 (70%), Positives = 160/193 (82%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           +LSA+E++LAAA+QEGF S +L++ D  +S KR L VIGI+TTFGRK NR+AIR+AWM T
Sbjct: 85  KLSALELELAAAKQEGFTSNFLTEKDGNNSNKRRLVVIGILTTFGRKNNRNAIRKAWMGT 144

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           GA L ++ + KGIV RFVIGRSAN GDS D  ID EN QTNDFIILD+HVEA EE  KK 
Sbjct: 145 GATLMKMANEKGIVARFVIGRSANWGDSLDKAIDDENRQTNDFIILDNHVEATEEFPKKA 204

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           K FF HAV+KWDAEFY KVND++YVNIDALG  L++ LDKPRVYIGCMKSGEVFSEP+ +
Sbjct: 205 KLFFAHAVDKWDAEFYAKVNDNIYVNIDALGTTLATQLDKPRVYIGCMKSGEVFSEPSHK 264

Query: 182 WYEPDWWKFGDGK 194
           WYEPDWWKFGD K
Sbjct: 265 WYEPDWWKFGDKK 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481497|ref|XP_003611034.1| Beta 1 3-glycosyltransferase-like protein I [Medicago truncatula] gi|355512369|gb|AES93992.1| Beta 1 3-glycosyltransferase-like protein I [Medicago truncatula]

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 138/210 (65%), Positives = 167/210 (79%), Gaps = 17/210 (8%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           +LSA+EM+L+AAR+EGFV   LS N+ +   K+ L+VIG++TTFGRKKNRDAIR+AWM T
Sbjct: 81  KLSALEMELSAARKEGFVPKQLSVNNEKQPTKKILSVIGVMTTFGRKKNRDAIRKAWMPT 140

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIIL-------------- 107
           GA+++ L + KGI+VRFVIGRSAN GDS D EI++ENSQTNDFIIL              
Sbjct: 141 GASIKNLAEQKGIIVRFVIGRSANRGDSLDKEIETENSQTNDFIILEVGRPDCVKKGFFL 200

Query: 108 ---DDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRV 164
              DD VEA EE AKK KSFF++AV+ WDAEFY KVNDDVYVN+DA G  ++SHL+KPRV
Sbjct: 201 RKGDDQVEAVEESAKKTKSFFIYAVDNWDAEFYAKVNDDVYVNLDAFGGVITSHLEKPRV 260

Query: 165 YIGCMKSGEVFSEPTQRWYEPDWWKFGDGK 194
           YIGCMKSGEVFS+PT +W+EPDWWKFGDGK
Sbjct: 261 YIGCMKSGEVFSDPTHKWHEPDWWKFGDGK 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116934|ref|XP_002331850.1| predicted protein [Populus trichocarpa] gi|222875088|gb|EEF12219.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 158/193 (81%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           +LSA+E +LAAA+Q GF S  L++ND  H+KKRHL VIGI+T FG K NRDA+R+AWM T
Sbjct: 85  KLSALETELAAAKQGGFTSKLLTENDGAHAKKRHLVVIGIMTRFGNKNNRDAVRKAWMGT 144

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           GA L+++++ KGIV RFVIG+SAN GD+ D  ID+EN Q+NDFIILDD VE  E+L KK 
Sbjct: 145 GAMLKKMENEKGIVARFVIGKSANPGDNLDRGIDNENRQSNDFIILDDLVEGTEDLPKKA 204

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           + FF +A +KWDAEFY KVND++YV IDALG AL++H DKPR YIGCMKSG+VFSEP+ +
Sbjct: 205 RLFFAYAADKWDAEFYAKVNDNIYVTIDALGTALAAHFDKPRAYIGCMKSGQVFSEPSHK 264

Query: 182 WYEPDWWKFGDGK 194
           WYEPDWWKFGD K
Sbjct: 265 WYEPDWWKFGDKK 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536611|ref|NP_001233999.1| beta 1,3-glycosyltransferase-like protein I [Solanum lycopersicum] gi|20372915|emb|CAD30015.1| beta 1,3-glycosyltransferase-like protein I [Solanum lycopersicum]

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 160/193 (82%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           RL+A++M+L  A +EGFVS +L  N+ + SKK+ LAVIG+ T FG KKNRDAIR+AWM T
Sbjct: 82  RLTALQMELGKASEEGFVSKHLLDNNEKDSKKKLLAVIGVSTNFGNKKNRDAIRKAWMPT 141

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           G A ++L++ KGIV+RFVIGRS N GDS D  ID E+   +DFIIL+DHVE+P+E +KK 
Sbjct: 142 GPARKKLEEEKGIVIRFVIGRSLNRGDSSDRAIDDESRSFDDFIILNDHVESPQEQSKKT 201

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           KSFF HAVE WDAEFY KVND+VYVN+DA+G+ L+++LDKPR YIGCMKSGEVFS+P Q+
Sbjct: 202 KSFFAHAVEHWDAEFYAKVNDNVYVNLDAIGSVLTTYLDKPRAYIGCMKSGEVFSQPEQK 261

Query: 182 WYEPDWWKFGDGK 194
           WYEP+WWKFGDGK
Sbjct: 262 WYEPEWWKFGDGK 274

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147629|ref|XP_003574417.1| PREDICTED: probable beta-1,3-galactosyltransferase 11-like [Brachypodium distachyon]

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 160/193 (82%)

Query: 2   RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
           RL+++EM+LAAA+ +GFV  Y S+ +  HS+K+ L VIGI+T+FGRK  RDA+R++W+ T
Sbjct: 84  RLASLEMELAAAKHDGFVGKYTSETNGTHSRKKPLIVIGIMTSFGRKNYRDAVRKSWLPT 143

Query: 62  GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
           G+ L++L+++KGI+VRF++GRSAN GD+FD EID EN  T DF+ILDDH+E+ EEL KK 
Sbjct: 144 GSMLKKLEEDKGIIVRFIVGRSANRGDTFDREIDDENKITKDFLILDDHIESDEELPKKT 203

Query: 122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
           KS+F +A E +DAEFY KVNDD+Y+N+D L A L +H DKPRVYIGCMKSGEVFSE T +
Sbjct: 204 KSYFANAAETFDAEFYAKVNDDIYINVDTLSAMLGTHWDKPRVYIGCMKSGEVFSEATHK 263

Query: 182 WYEPDWWKFGDGK 194
           WYEPDWWKFGDGK
Sbjct: 264 WYEPDWWKFGDGK 276

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2154247	338	AT5G53340 [Arabidopsis thalian	0.984	0.568	0.645	5.6e-68
TAIR|locus:2116627	345	AT4G32120 [Arabidopsis thalian	0.969	0.547	0.492	1.6e-47
TAIR|locus:2059531	346	AT2G25300 [Arabidopsis thalian	0.969	0.546	0.492	7.9e-46
TAIR|locus:2062545	409	AT2G32430 [Arabidopsis thalian	0.969	0.462	0.489	1.6e-45
TAIR|locus:505006138	398	DD46 [Arabidopsis thaliana (ta	0.969	0.474	0.473	2.8e-43
TAIR|locus:2207225	407	AT1G05170 [Arabidopsis thalian	0.969	0.464	0.474	1.2e-42
TAIR|locus:2027352	384	AT1G11730 [Arabidopsis thalian	0.958	0.486	0.463	1.4e-41
TAIR|locus:2116452	407	AT4G26940 [Arabidopsis thalian	0.969	0.464	0.454	2.8e-41
TAIR|locus:2038031	399	AT1G32930 [Arabidopsis thalian	0.969	0.473	0.443	6.8e-40
TAIR|locus:2029471	393	AT1G77810 [Arabidopsis thalian	0.825	0.409	0.497	3.7e-39

TAIR|locus:2154247 AT5G53340 [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 124/192 (64%), Positives = 155/192 (80%)

Query:     3 LSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMSTG 62
             L+A+EM+L++ARQEGFVS      D   +KKR L VIGI+T+ G KK RDA+R+AWM TG
Sbjct:    78 LAALEMELSSARQEGFVSKSPKLADGTETKKRPLVVIGIMTSLGNKKKRDAVRQAWMGTG 137

Query:    63 AALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMK 122
             A+L++L+  KG++ RFVIGRSAN GDS D  ID+ENSQT+DFIILDD VEAPEE +KK+K
Sbjct:   138 ASLKKLESEKGVIARFVIGRSANKGDSMDKSIDTENSQTDDFIILDDVVEAPEEASKKVK 197

Query:   123 SFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRW 182
              FF +A ++WDA+FY K  D++YVNIDALG  L++HL+ PR YIGCMKSGEVFSEP  +W
Sbjct:   198 LFFAYAADRWDAQFYAKAIDNIYVNIDALGTTLAAHLENPRAYIGCMKSGEVFSEPNHKW 257

Query:   183 YEPDWWKFGDGK 194
             YEP+WWKFGD K
Sbjct:   258 YEPEWWKFGDKK 269

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2116627 AT4G32120 [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 95/193 (49%), Positives = 131/193 (67%)

Query:     2 RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
             R+   EM+LA A+ +G++     Q     S K+ LAVIG+ T FG    R+  R +WM  
Sbjct:    88 RIVETEMELAQAKSQGYLK---KQKSVSSSGKKMLAVIGVYTGFGSHLKRNKFRGSWMPR 144

Query:    62 GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
               AL++L++ +G+V+RFVIGRSAN GDS D +ID EN  T DF+IL++H EA EEL KK+
Sbjct:   145 DDALKKLEE-RGVVIRFVIGRSANRGDSLDRKIDEENRATKDFLILENHEEAQEELPKKV 203

Query:   122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
             K F+  AV+ WDAEFY KV+D+V ++++ + A L S   +   YIGCMKSG+V +E   +
Sbjct:   204 KFFYSAAVQNWDAEFYVKVDDNVDLDLEGMIALLESRRSQDGAYIGCMKSGDVITEEGSQ 263

Query:   182 WYEPDWWKFGDGK 194
             WYEP+WWKFGD K
Sbjct:   264 WYEPEWWKFGDDK 276

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2059531 AT2G25300 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 95/193 (49%), Positives = 130/193 (67%)

Query:     2 RLSAIEMDLAAARQEGFVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
             R+   EM+L  A+ +G++    S +    S K+ LAVIG+ + FG    R+  R ++M  
Sbjct:    89 RIVETEMELTLAKSQGYLKNLKSGSS---SGKKLLAVIGVYSGFGSHLRRNTFRGSYMPQ 145

Query:    62 GAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKM 121
             G ALR+L++ +GIV+RFVIGRS N GDS D +ID EN    DF+IL++H EA EELAKK+
Sbjct:   146 GDALRKLEE-RGIVIRFVIGRSPNRGDSLDRKIDEENQARKDFLILENHEEAQEELAKKV 204

Query:   122 KSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQR 181
             K FF  AV+ WDAEFY KV+D++ ++++ L   L S   +   YIGCMKSGEV +E   +
Sbjct:   205 KFFFSAAVQNWDAEFYIKVDDNIDLDLEGLIGLLESRRGQDAAYIGCMKSGEVVAEEGGK 264

Query:   182 WYEPDWWKFGDGK 194
             WYEP+WWKFGD K
Sbjct:   265 WYEPEWWKFGDEK 277

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

TAIR|locus:2062545 AT2G32430 [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 96/196 (48%), Positives = 132/196 (67%)

Query:     3 LSAIEMDLAAAR--QEGFVSGYLSQNDTQHS----KKRHLAVIGIITTFGRKKNRDAIRE 56
             +S++EM+LAAAR  QE  V+G    ND +      K+R+L V+GI T F  +K RD++R 
Sbjct:   102 ISSLEMELAAARSAQESLVNGAPISNDMEKKQLPGKRRYLMVVGINTAFSSRKRRDSVRT 161

Query:    57 AWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEE 116
              WM +G   ++L++ KGI++RFVIG SA  G   D  I++E+ +  DF+ LD HVE   E
Sbjct:   162 TWMPSGEKRKKLEEEKGIIIRFVIGHSATAGGILDRSIEAEDKKHGDFLRLD-HVEGYLE 220

Query:   117 LAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176
             L+ K K++F  AV KWDAEFY KV+DDV+VNI  LG  L  H  K RVY+GCMKSG V S
Sbjct:   221 LSGKTKTYFSTAVSKWDAEFYVKVDDDVHVNIATLGETLVRHRKKHRVYLGCMKSGPVLS 280

Query:   177 EPTQRWYEPDWWKFGD 192
             +   R++EP++WKFG+
Sbjct:   281 QKGVRYHEPEYWKFGE 296

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

TAIR|locus:505006138 DD46 [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 91/192 (47%), Positives = 127/192 (66%)

Query:     3 LSAIEMDLAAARQ-EGFVSGYLSQNDTQHSKKRHL-AVIGIITTFGRKKNRDAIREAWMS 60
             +S ++  L+A    +  V+   + + T+ ++K  +  VIGI T F  +K RD++RE WM 
Sbjct:    92 VSMLQKQLSATHSPQQIVNVSATNSSTEGNQKNKVFMVIGINTAFSSRKRRDSLRETWMP 151

Query:    61 TGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKK 120
              G  L +L+  KGIVV+F+IG S+      D EIDSE++Q NDF  LD HVE    L+ K
Sbjct:   152 QGEKLEKLEKEKGIVVKFMIGHSSTPNSMLDKEIDSEDAQYNDFFRLD-HVEGYYNLSAK 210

Query:   121 MKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQ 180
              KSFF  AV KWDAEFY K++DDV+VN+  L + L+SH  KPRVYIGCMKSG V ++ T 
Sbjct:   211 TKSFFSSAVAKWDAEFYVKIDDDVHVNLGTLASTLASHRSKPRVYIGCMKSGPVLTKKTA 270

Query:   181 RWYEPDWWKFGD 192
             ++ EP++WKFG+
Sbjct:   271 KYREPEFWKFGE 282

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

TAIR|locus:2207225 AT1G05170 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 93/196 (47%), Positives = 126/196 (64%)

Query:     3 LSAIEMDLAAAR--QEGFVSGYLSQNDT----QHSKKRHLAVIGIITTFGRKKNRDAIRE 56
             +S++EM+LAAAR  QE   +G    +D        ++R L V+GI T F  +K RD+IR 
Sbjct:   100 ISSLEMELAAARSVQESLQNGAPLSDDMGKKQPQEQRRFLMVVGINTAFSSRKRRDSIRA 159

Query:    57 AWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEE 116
              WM  G   + L++ KGI++RFVIG SA  G   D  I++E+ +  DF+ LD HVE   E
Sbjct:   160 TWMPQGEKRKRLEEEKGIIIRFVIGHSATTGGILDRAIEAEDRKHGDFLRLD-HVEGYLE 218

Query:   117 LAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176
             L+ K K++F  A   WDA+FY KV+DDV+VNI  LG  L  H  KPRVYIGCMKSG V S
Sbjct:   219 LSGKTKTYFSTAFSMWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLS 278

Query:   177 EPTQRWYEPDWWKFGD 192
             +   R++EP++WKFG+
Sbjct:   279 QKGVRYHEPEYWKFGE 294

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

TAIR|locus:2027352 AT1G11730 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 89/192 (46%), Positives = 130/192 (67%)

Query:     3 LSAIEMDLAAARQEG-FVSGYLSQNDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMST 61
             +S +EM L AAR E   +SG  + ++ +  K+++  VIGI T F  +K RD++R  WM  
Sbjct:    83 ISNLEMKLVAARAERESLSGKFNISN-EAKKRKYFMVIGINTAFSSRKRRDSVRSTWMPQ 141

Query:    62 GAALRELQDNKGIVVRFVIGRSA-NHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKK 120
             G  L++L++ KGI+VRFVIG S  +HG   D  I++E     DF+ L+ H E   +L+ K
Sbjct:   142 GENLKKLEEEKGIIVRFVIGHSVLSHG-ILDKAIEAEEKTHGDFLRLE-HTEGYMKLSAK 199

Query:   121 MKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQ 180
              K+FF  AV  WDAEFY KV+DDV+VN+ +L  ALS+H +KPRVY+GCMKSG V +  + 
Sbjct:   200 TKTFFATAVSLWDAEFYIKVDDDVHVNLASLKKALSAHQNKPRVYVGCMKSGPVLARKSV 259

Query:   181 RWYEPDWWKFGD 192
             +++EP++WKFG+
Sbjct:   260 KYHEPEYWKFGE 271

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

TAIR|locus:2116452 AT4G26940 [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 89/196 (45%), Positives = 129/196 (65%)

Query:     3 LSAIEMDLAAAR--QEGFVSGYLSQNDTQH----SKKRHLAVIGIITTFGRKKNRDAIRE 56
             +S +E +LA AR  QE  ++G    +D +     +K+++L V+G+ T F  +K RD++R 
Sbjct:   101 ISKLETELADARAAQESIMNGSPVSDDFKLPETVTKRKYLMVVGVNTAFSSRKRRDSVRA 160

Query:    57 AWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEE 116
              WM  G   ++L++ KGIV+RFVIG S+  G   D  I +E S+  DF+ LD HVE   E
Sbjct:   161 TWMPPGEERKKLEEEKGIVMRFVIGHSSTPGGILDRAIQAEESKHGDFLRLD-HVEGYLE 219

Query:   117 LAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176
             L+ K K++F  A   WDA+FY KV+DDV+VNI  LGA L+ +  KPRVYIGCMKSG V +
Sbjct:   220 LSAKTKTYFTTAFAMWDADFYVKVDDDVHVNIATLGAELARYRMKPRVYIGCMKSGPVLA 279

Query:   177 EPTQRWYEPDWWKFGD 192
             +   R++EP++WKFG+
Sbjct:   280 QKGVRYHEPEYWKFGE 295

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

TAIR|locus:2038031 AT1G32930 [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 87/196 (44%), Positives = 128/196 (65%)

Query:     3 LSAIEMDLA---AARQEGFV-SGYLSQNDTQHSK--KRHLAVIGIITTFGRKKNRDAIRE 56
             +S++E++LA   AAR +G   S  +++     SK   R   V+GI+T F  +K RD+IR 
Sbjct:    92 ISSLEVELATARAARSDGRDGSPAVAKTVADQSKIRPRMFFVMGIMTAFSSRKRRDSIRG 151

Query:    57 AWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEE 116
              W+  G  L+ L+  KGI++RFVIG S++ G   D  I++E  Q  DF  L+ H+E   E
Sbjct:   152 TWLPKGDELKRLETEKGIIMRFVIGHSSSPGGVLDHTIEAEEEQHKDFFRLN-HIEGYHE 210

Query:   117 LAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176
             L+ K + +F  AV KWDA+FY KV+DDV+VN+  LG+ L+ H  KPRVYIGCMKSG V +
Sbjct:   211 LSSKTQIYFSSAVAKWDADFYIKVDDDVHVNLGMLGSTLARHRSKPRVYIGCMKSGPVLA 270

Query:   177 EPTQRWYEPDWWKFGD 192
             +   +++EP++WKFG+
Sbjct:   271 QKGVKYHEPEYWKFGE 286

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2029471 AT1G77810 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 84/169 (49%), Positives = 111/169 (65%)

Query:    32 KKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFD 91
             +K+   V+GI T F  +K RD++RE WM  G  L  L+  KGIV++F+IG SA      D
Sbjct:   115 RKKVFMVMGINTAFSSRKRRDSVRETWMPQGEKLERLEQEKGIVIKFMIGHSATSNSILD 174

Query:    92 TEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDAL 151
               IDSE++Q  DF+ L+ HVE   EL+ K K FF  AV KWDAEFY KV+DDV+VN+  L
Sbjct:   175 RAIDSEDAQHKDFLRLE-HVEGYHELSAKTKIFFSTAVAKWDAEFYIKVDDDVHVNLGML 233

Query:   152 GAALSSHLDKPRVYIGCMKSGEVFSEP------TQRWYEPDWWKFG-DG 193
              + L+ H  KPRVYIGCMKSG V ++       T +++EP++WKFG DG
Sbjct:   234 ASTLARHRSKPRVYIGCMKSGPVLAQNLLNCFRTVKYHEPEYWKFGEDG 282

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0048531 "beta-1,3-galactosyltransferase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0447 hypothetical protein (344 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
PLN03193	408	PLN03193, PLN03193, beta-1,3-galactosyltransferase	3e-62
pfam01762	196	pfam01762, Galactosyl_T, Galactosyltransferase	6e-23

>gnl|CDD|178735 PLN03193, PLN03193, beta-1,3-galactosyltransferase; Provisional

 Score =  197 bits (503), Expect = 3e-62
 Identities = 94/196 (47%), Positives = 130/196 (66%), Gaps = 7/196 (3%)

Query: 3   LSAIEMDLAAAR--QEGFVSGYLSQNDTQHS----KKRHLAVIGIITTFGRKKNRDAIRE 56
           +S +EM+LAAAR  QE  ++G     D + +    K+R+L V+GI T F  +K RD++R 
Sbjct: 101 ISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160

Query: 57  AWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEE 116
            WM  G   ++L++ KGI++RFVIG SA  G   D  I++E+ +  DF+ LD HVE   E
Sbjct: 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLD-HVEGYLE 219

Query: 117 LAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS 176
           L+ K K++F  AV  WDA+FY KV+DDV+VNI  LG  L  H  KPRVYIGCMKSG V S
Sbjct: 220 LSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLS 279

Query: 177 EPTQRWYEPDWWKFGD 192
           +   R++EP++WKFG+
Sbjct: 280 QKGVRYHEPEYWKFGE 295

Length = 408

>gnl|CDD|216686 pfam01762, Galactosyl_T, Galactosyltransferase

 Score = 90.5 bits (225), Expect = 6e-23
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 51  RDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDH 110
           R+AIR+ WM+ G +         I   F++G SA+        +  E     D +++D  
Sbjct: 3   RNAIRKTWMNKGNSEG-----GRIKSLFLVGLSADTDGKVKDLVMEEAKLYGDIVVVD-F 56

Query: 111 VEAPEELAKKMKSFFVHAVEKWD-AEFYTKVNDDVYVNIDALGAALSSHL---DKPRVYI 166
            +  E L  K  +  ++AV K   A++  K++DDVY   D L + L        +   Y 
Sbjct: 57  EDTYENLTFKTLTGLLYAVSKAPSAKYIGKIDDDVYFFPDKLLSLLDRGNINPSESSFYG 116

Query: 167 GCMKSGEVFSEPTQRWYEPD 186
             MK G V      +WY P 
Sbjct: 117 YVMKEGPVIRNKKSKWYVPP 136

This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta- galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PLN03193	408	beta-1,3-galactosyltransferase; Provisional	100.0
KOG2287	349	consensus Galactosyltransferases [Carbohydrate tra	100.0
PLN03133	636	beta-1,3-galactosyltransferase; Provisional	100.0
KOG2288	274	consensus Galactosyltransferases [Carbohydrate tra	100.0
PF01762	195	Galactosyl_T: Galactosyltransferase; InterPro: IPR	100.0
PTZ00210	382	UDP-GlcNAc-dependent glycosyltransferase; Provisio	99.94
KOG2246	364	consensus Galactosyltransferases [Carbohydrate tra	99.34
PF02434	252	Fringe: Fringe-like; InterPro: IPR003378 The Notch	99.33
PLN03153	537	hypothetical protein; Provisional	97.5
KOG3708	681	consensus Uncharacterized conserved protein [Funct	92.98
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	92.61
PRK11204	420	N-glycosyltransferase; Provisional	88.75
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	88.32
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	87.15
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	86.33
PRK14583	444	hmsR N-glycosyltransferase; Provisional	84.75
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	81.79

>PLN03193 beta-1,3-galactosyltransferase; Provisional

Probab=100.00  E-value=2e-47  Score=337.80  Aligned_cols=191  Identities=48%  Similarity=0.848  Sum_probs=164.6

Q ss_pred             ccchhhhhhHHHHhhcc--ccCCCCC----CCCCCCCCCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceE
Q 029327            2 RLSAIEMDLAAARQEGF--VSGYLSQ----NDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIV   75 (195)
Q Consensus         2 ~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~   75 (195)
                      ++|..||++|+|++.++  .++..++    +.....+++++|+|+|+|+|+|++||++||+||++.+..+.+++...+++
T Consensus       100 ~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~  179 (408)
T PLN03193        100 TISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGII  179 (408)
T ss_pred             hhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEE
Confidence            68999999999999877  6664333    23445778899999999999999999999999999765444555568899


Q ss_pred             EEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHH
Q 029327           76 VRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAAL  155 (195)
Q Consensus        76 ~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L  155 (195)
                      ++||||.+.+.+..++..|++|+++|||||++ ||.|+|.|||+||+++|+|+.++|+++||||+|||+|||+++|+.+|
T Consensus       180 vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-DfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L  258 (408)
T PLN03193        180 IRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-DHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETL  258 (408)
T ss_pred             EEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-ecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHH
Confidence            99999998754467888999999999999977 79999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCceEEEEeecCcceeCCCCCccccCccccCCC
Q 029327          156 SSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDG  193 (195)
Q Consensus       156 ~~~~~~~~ly~G~~~~~~~~R~~~~Kwyvp~~~~~g~~  193 (195)
                      ..+...+++|+||++.+|+..+++.|||.|+||+||.+
T Consensus       259 ~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~  296 (408)
T PLN03193        259 VRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGEN  296 (408)
T ss_pred             HhcCCCCCEEEEecccCccccCCCCcCcCcccccccCc
Confidence            88766678999999876554445788899999999853

>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.4e-39  Score=283.02  Aligned_cols=153  Identities=23%  Similarity=0.374  Sum_probs=137.8

Q ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCcc
Q 029327           33 KRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVE  112 (195)
Q Consensus        33 ~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~D  112 (195)
                      ..++++++|+|+++|++||++||+|||+...     ..+..++++|++|.+++.+ .++..|.+|++.|||||+. ||.|
T Consensus        93 ~~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~-df~D  165 (349)
T KOG2287|consen   93 RPPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQV-DFED  165 (349)
T ss_pred             CCceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEE-eccc
Confidence            3589999999999999999999999999853     2467899999999988643 5578999999999999977 8999


Q ss_pred             CCcchHHHHHHHHHHHhhcC-CceEEEEEcCeeEeeHHHHHHHHhcc-CCCCceEEEEe-ecCcceeCCCCCccccCccc
Q 029327          113 APEELAKKMKSFFVHAVEKW-DAEFYTKVNDDVYVNIDALGAALSSH-LDKPRVYIGCM-KSGEVFSEPTQRWYEPDWWK  189 (195)
Q Consensus       113 sY~nLt~Ktl~~l~w~~~~c-~~~fvlK~DDDvfVn~~~L~~~L~~~-~~~~~ly~G~~-~~~~~~R~~~~Kwyvp~~~~  189 (195)
                      +|.|||+||++++.|+.++| +++|++|+|||+|||+++|+.+|... .+.+.+|.|.+ .+.+|+|++.+|||||+. .
T Consensus       166 ty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~-~  244 (349)
T KOG2287|consen  166 TYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES-E  244 (349)
T ss_pred             chhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH-H
Confidence            99999999999999999999 79999999999999999999999998 78889999995 456999999999999987 5


Q ss_pred             cCCC
Q 029327          190 FGDG  193 (195)
Q Consensus       190 ~g~~  193 (195)
                      |..+
T Consensus       245 y~~~  248 (349)
T KOG2287|consen  245 YPCS  248 (349)
T ss_pred             CCCC
Confidence            5443

>PLN03133 beta-1,3-galactosyltransferase; Provisional

Probab=100.00  E-value=6.8e-39  Score=297.38  Aligned_cols=151  Identities=23%  Similarity=0.347  Sum_probs=133.4

Q ss_pred             CCCCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCC
Q 029327           31 SKKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDH  110 (195)
Q Consensus        31 ~~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df  110 (195)
                      +.++++|+|+|+|+|+|++||+|||+|||+...     ..+..++++|++|.+.+  +.++..|.+|+++|||||+. ||
T Consensus       381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~-dF  452 (636)
T PLN03133        381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLM-PF  452 (636)
T ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEE-ee
Confidence            356799999999999999999999999999642     12456999999999876  67888999999999999977 89


Q ss_pred             ccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEee-cCcceeCCCCCccccCccc
Q 029327          111 VEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMK-SGEVFSEPTQRWYEPDWWK  189 (195)
Q Consensus       111 ~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~-~~~~~R~~~~Kwyvp~~~~  189 (195)
                      .|+|+|||+||++++.|+...|+++|+||+|||+|||+++|+++|+.....+.+|+|++. ..+|+|++.+|||||+..+
T Consensus       453 ~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey  532 (636)
T PLN03133        453 VDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW  532 (636)
T ss_pred             echhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC
Confidence            999999999999999998755599999999999999999999999877667789999975 5689999999999988643

>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.1e-38  Score=260.44  Aligned_cols=160  Identities=51%  Similarity=1.018  Sum_probs=151.5

Q ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCc
Q 029327           32 KKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHV  111 (195)
Q Consensus        32 ~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~  111 (195)
                      +++++++|+|.|+++..+||+.+|+||...+..+++++...+|.++|+||..+ .+.+.+..|++|+++|+|.+.+++..
T Consensus         8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~-~g~~~~r~ie~E~~~~~DfllLd~h~   86 (274)
T KOG2288|consen    8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTAT-LGASLDRALEEENAQHGDFLLLDRHE   86 (274)
T ss_pred             ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCC-ccHHHHHHHHHHHHhcCCeEeechhH
Confidence            78999999999999999999999999999988888898899999999999943 34788899999999999999996699


Q ss_pred             cCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEeecCcceeCCCCCccccCccccC
Q 029327          112 EAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFSEPTQRWYEPDWWKFG  191 (195)
Q Consensus       112 DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~~~~R~~~~Kwyvp~~~~~g  191 (195)
                      |+|.+|+.||+..|.++..+++++|++|+|||+|||+..|...|..+..++++|||||++|+++-+|.+|||+|+ |+||
T Consensus        87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg  165 (274)
T KOG2288|consen   87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG  165 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence            999999999999999999999999999999999999999999999998889999999999999999999999999 6999


Q ss_pred             CC
Q 029327          192 DG  193 (195)
Q Consensus       192 ~~  193 (195)
                      ++
T Consensus       166 ~~  167 (274)
T KOG2288|consen  166 DN  167 (274)
T ss_pred             cc
Confidence            87

>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=100.00  E-value=1.6e-36  Score=246.50  Aligned_cols=139  Identities=29%  Similarity=0.476  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHH
Q 029327           49 KNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHA  128 (195)
Q Consensus        49 ~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~  128 (195)
                      +||++||+||++...     ..+.+++++||+|.+.+.++.++..|.+|+++|||||+. ||.|+|.|||+||+++|+|+
T Consensus         1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~-d~~D~y~nlt~K~~~~~~w~   74 (195)
T PF01762_consen    1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQG-DFVDSYRNLTLKTLAGLKWA   74 (195)
T ss_pred             ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEee-ecccccchhhHHHHHHHHHH
Confidence            589999999999752     135789999999999844467788899999999999977 89999999999999999999


Q ss_pred             hhcCC-ceEEEEEcCeeEeeHHHHHHHHhcc--CCC-CceEEEEeecCcceeCCCCCccccCccccCCCC
Q 029327          129 VEKWD-AEFYTKVNDDVYVNIDALGAALSSH--LDK-PRVYIGCMKSGEVFSEPTQRWYEPDWWKFGDGK  194 (195)
Q Consensus       129 ~~~c~-~~fvlK~DDDvfVn~~~L~~~L~~~--~~~-~~ly~G~~~~~~~~R~~~~Kwyvp~~~~~g~~~  194 (195)
                      .++|+ ++|++|+|||+|||+++|.++|...  .+. ..+|+|++..++|+|++.+|||+|+. .|..+.
T Consensus        75 ~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~-~y~~~~  143 (195)
T PF01762_consen   75 SKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE-EYPDDY  143 (195)
T ss_pred             HhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee-eccccc
Confidence            99995 9999999999999999999999987  233 34455557677999999999999988 444443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane

>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional

Probab=99.94  E-value=7.5e-27  Score=204.64  Aligned_cols=148  Identities=17%  Similarity=0.311  Sum_probs=125.9

Q ss_pred             CCCCCeeEEEEEECCCCC--HHHHHHHHHHHhccchhhhh-hccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEE
Q 029327           30 HSKKRHLAVIGIITTFGR--KKNRDAIREAWMSTGAALRE-LQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFII  106 (195)
Q Consensus        30 ~~~~~~~lli~V~S~p~~--~~rR~aIR~TW~~~~~~~~~-~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~  106 (195)
                      -+.++.+++++|+|..++  +.||++.|+||.+.....++ ..-...+.++|++|.+++.+-+.++.|.+|+++|||||+
T Consensus        75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi  154 (382)
T PTZ00210         75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT  154 (382)
T ss_pred             hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence            467788999999999998  88999999999986532211 122466788999999998777899999999999999997


Q ss_pred             eCCC------------------ccCCcchHHHHHHHHHHHhhcC-CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEE
Q 029327          107 LDDH------------------VEAPEELAKKMKSFFVHAVEKW-DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIG  167 (195)
Q Consensus       107 ~~df------------------~DsY~nLt~Ktl~~l~w~~~~c-~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G  167 (195)
                      + +|                  .|+|.|+|+||+++++|+...| +++|++|+|||+|||+++++++|+.. +++.+|+|
T Consensus       155 l-pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G  232 (382)
T PTZ00210        155 L-PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG  232 (382)
T ss_pred             E-ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence            7 69                  7778889999999999999999 89999999999999999999999764 56679999


Q ss_pred             Eee-cCcceeCCC
Q 029327          168 CMK-SGEVFSEPT  179 (195)
Q Consensus       168 ~~~-~~~~~R~~~  179 (195)
                      .+. ...|.|++.
T Consensus       233 ~v~~~~~p~Rd~~  245 (382)
T PTZ00210        233 RYNYYNRIWRRNQ  245 (382)
T ss_pred             eeCCCCccccCCC
Confidence            964 346788764

>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]

Probab=99.34  E-value=3.2e-12  Score=113.53  Aligned_cols=117  Identities=20%  Similarity=0.302  Sum_probs=94.6

Q ss_pred             CCCCCCCeeEEEEEECCCCCHHHH-HHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEE
Q 029327           28 TQHSKKRHLAVIGIITTFGRKKNR-DAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFII  106 (195)
Q Consensus        28 ~~~~~~~~~lli~V~S~p~~~~rR-~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~  106 (195)
                      +.-..++..+++.|+|.+.+...| +.+-+||++.+..           ..|+--.           +.++...+.-| .
T Consensus        84 ~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~-----------~s~~~~~f~~v-~  140 (364)
T KOG2246|consen   84 ALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPT-----------LSKDDSRFPTV-Y  140 (364)
T ss_pred             hhccCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCcc-----------CCCCCCcCcee-e
Confidence            335677889999999999888877 5999999998742           2344311           12222344444 3


Q ss_pred             eCCCccCCcchHHHHHHHHHHHhhcC--CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEE
Q 029327          107 LDDHVEAPEELAKKMKSFFVHAVEKW--DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGC  168 (195)
Q Consensus       107 ~~df~DsY~nLt~Ktl~~l~w~~~~c--~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~  168 (195)
                      . +..|+|+++..||..+++++.++.  +++|++|+|||+|+.++||..+|.++++.+++|+|+
T Consensus       141 ~-~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~  203 (364)
T KOG2246|consen  141 Y-NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGY  203 (364)
T ss_pred             c-cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecc
Confidence            6 689999999999999999998776  899999999999999999999999999999999999

>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []

Probab=99.33  E-value=2.7e-12  Score=108.79  Aligned_cols=116  Identities=19%  Similarity=0.237  Sum_probs=64.8

Q ss_pred             eeEEEEEECCCCCHHHH-HHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccC
Q 029327           35 HLAVIGIITTFGRKKNR-DAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEA  113 (195)
Q Consensus        35 ~~lli~V~S~p~~~~rR-~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~Ds  113 (195)
                      -.++|+|+|++++.+.| .+|++||++.+..           .+|+.....+      ..|..+  .-.+++ .++...+
T Consensus         6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~d------~~l~~~--~~~~l~-~~~~~~~   65 (252)
T PF02434_consen    6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAED------PSLPTV--TGVHLV-NPNCDAG   65 (252)
T ss_dssp             GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS--------HHHHHH--HGGGEE-E------
T ss_pred             ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCccc------cccccc--cccccc-cCCCcch
Confidence            35788999999877766 8999999998641           2343322222      233333  223444 5566666


Q ss_pred             CcchHHHHHHHHHHHhhcC-CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEee
Q 029327          114 PEELAKKMKSFFVHAVEKW-DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMK  170 (195)
Q Consensus       114 Y~nLt~Ktl~~l~w~~~~c-~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~  170 (195)
                      +-..+++.++++.+-...- +.+|++++|||+||++++|+++|..+++.+++|+|+-.
T Consensus        66 ~~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~  123 (252)
T PF02434_consen   66 HCRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPS  123 (252)
T ss_dssp             -------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE
T ss_pred             hhHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeec
Confidence            5544555555545422222 78999999999999999999999999999999999953

It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.

>PLN03153 hypothetical protein; Provisional

Probab=97.50  E-value=0.001  Score=61.58  Aligned_cols=36  Identities=33%  Similarity=0.430  Sum_probs=34.9

Q ss_pred             CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEE
Q 029327          133 DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGC  168 (195)
Q Consensus       133 ~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~  168 (195)
                      +++|++++|||+|+.++||++.|..+++.+..|+|.
T Consensus       210 d~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs  245 (537)
T PLN03153        210 DVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGG  245 (537)
T ss_pred             CCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecc
Confidence            899999999999999999999999999999999996

>KOG3708 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=0.15  Score=47.49  Aligned_cols=50  Identities=16%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhhcC--CceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEE
Q 029327          119 KKMKSFFVHAVEKW--DAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGC  168 (195)
Q Consensus       119 ~Ktl~~l~w~~~~c--~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~  168 (195)
                      .-..+.++++.++.  +++|++-+-|++|||...|++.+..+.-+..+|+|-
T Consensus        81 ~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGE  132 (681)
T KOG3708|consen   81 KTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGE  132 (681)
T ss_pred             ccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccch
Confidence            33446777877776  899999999999999999999999988888999986

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=92.61  E-value=1.2  Score=35.53  Aligned_cols=106  Identities=12%  Similarity=0.082  Sum_probs=52.2

Q ss_pred             eEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCe--EEeCCCccC
Q 029327           36 LAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDF--IILDDHVEA  113 (195)
Q Consensus        36 ~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDI--i~~~df~Ds  113 (195)
                      .+.|+|++.-....-++.|+.--...         ...+.++++...+.+   ...+.+++-...++.+  ..+.    .
T Consensus         2 ~v~Vvip~~~~~~~l~~~l~sl~~~~---------~~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~v~vi~----~   65 (228)
T PF13641_consen    2 RVSVVIPAYNEDDVLRRCLESLLAQD---------YPRLEVVVVDDGSDD---ETAEILRALAARYPRVRVRVIR----R   65 (228)
T ss_dssp             -EEEE--BSS-HHHHHHHHHHHTTSH---------HHTEEEEEEEE-SSS----GCTTHHHHHHTTGG-GEEEEE-----
T ss_pred             EEEEEEEecCCHHHHHHHHHHHHcCC---------CCCeEEEEEECCCCh---HHHHHHHHHHHHcCCCceEEee----c
Confidence            35666766654444444444443221         123556666644332   3334555555566653  2221    1


Q ss_pred             CcchH--HHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327          114 PEELA--KKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH  158 (195)
Q Consensus       114 Y~nLt--~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~  158 (195)
                      -.|..  .|. .++.++...+..+|++.+|||+.+.++-|...+...
T Consensus        66 ~~~~g~~~k~-~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~  111 (228)
T PF13641_consen   66 PRNPGPGGKA-RALNEALAAARGDYILFLDDDTVLDPDWLERLLAAF  111 (228)
T ss_dssp             ---HHHHHHH-HHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred             CCCCCcchHH-HHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHH
Confidence            12332  233 355677777889999999999999998888877765

>PRK11204 N-glycosyltransferase; Provisional

Probab=88.75  E-value=12  Score=33.40  Aligned_cols=108  Identities=13%  Similarity=0.076  Sum_probs=62.1

Q ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCcc
Q 029327           33 KRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVE  112 (195)
Q Consensus        33 ~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~D  112 (195)
                      +.+.+.|+|++.-+.    +.|+++-.+...    . .-....++.+-..+.+   ...+.+++..+++..+..+    +
T Consensus        52 ~~p~vsViIp~yne~----~~i~~~l~sl~~----q-~yp~~eiiVvdD~s~d---~t~~~l~~~~~~~~~v~~i----~  115 (420)
T PRK11204         52 EYPGVSILVPCYNEG----ENVEETISHLLA----L-RYPNYEVIAINDGSSD---NTGEILDRLAAQIPRLRVI----H  115 (420)
T ss_pred             CCCCEEEEEecCCCH----HHHHHHHHHHHh----C-CCCCeEEEEEECCCCc---cHHHHHHHHHHhCCcEEEE----E
Confidence            345677777776554    335555443211    0 0113444444333332   3334555555666666544    2


Q ss_pred             CCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327          113 APEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH  158 (195)
Q Consensus       113 sY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~  158 (195)
                      ...|.. | -.++..+.+.++.+|++..|+|..+..+.|.+.++..
T Consensus       116 ~~~n~G-k-a~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~  159 (420)
T PRK11204        116 LAENQG-K-ANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHF  159 (420)
T ss_pred             cCCCCC-H-HHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHH
Confidence            222332 3 3456666677899999999999999999888877765

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=88.32  E-value=10  Score=29.78  Aligned_cols=78  Identities=13%  Similarity=0.087  Sum_probs=45.0

Q ss_pred             eEEEEEeeecCCCCCchhhhch-hhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHH
Q 029327           74 IVVRFVIGRSANHGDSFDTEID-SENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALG  152 (195)
Q Consensus        74 v~~vFvvG~~~~~~~~~~~~l~-~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~  152 (195)
                      +.++.|-..+.+   ...+.++ .....+.-+..+. ... -.|. .|. .++.+....+..+|++.+|+|..+.++-|.
T Consensus        29 ~eiivvdd~s~d---~t~~~~~~~~~~~~~~v~~~~-~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~  101 (229)
T cd04192          29 FEVILVDDHSTD---GTVQILEFAAAKPNFQLKILN-NSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL  101 (229)
T ss_pred             eEEEEEcCCCCc---ChHHHHHHHHhCCCcceEEee-ccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence            566666655443   2223343 2222233444442 222 1222 232 345666677889999999999999988888


Q ss_pred             HHHhcc
Q 029327          153 AALSSH  158 (195)
Q Consensus       153 ~~L~~~  158 (195)
                      ..+...
T Consensus       102 ~l~~~~  107 (229)
T cd04192         102 TFVAFI  107 (229)
T ss_pred             HHHHHh
Confidence            877744

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=87.15  E-value=21  Score=31.58  Aligned_cols=110  Identities=8%  Similarity=0.062  Sum_probs=62.5

Q ss_pred             CeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCC--eEEeCCCc
Q 029327           34 RHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTND--FIILDDHV  111 (195)
Q Consensus        34 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygD--Ii~~~df~  111 (195)
                      .+.+-|+|++.-....-.+.|+ +...+.        -..+.++++...+++  .+ .+.+++=.+.|.+  |..+.+ .
T Consensus        40 ~p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~D--~t-~~iv~~~~~~~p~~~i~~v~~-~  106 (373)
T TIGR03472        40 WPPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPDD--PA-LAVVRRLRADFPDADIDLVID-A  106 (373)
T ss_pred             CCCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCCC--cH-HHHHHHHHHhCCCCceEEEEC-C
Confidence            4556777776655444445554 333321        123778887766554  22 2233333345665  322211 1


Q ss_pred             cCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327          112 EAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH  158 (195)
Q Consensus       112 DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~  158 (195)
                      +. .....|.-...+ +.+.++.+|++.+|+|+.+.++-|.+.+...
T Consensus       107 ~~-~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~  151 (373)
T TIGR03472       107 RR-HGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPL  151 (373)
T ss_pred             CC-CCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHh
Confidence            11 122346544333 4567799999999999999999888877765

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=86.33  E-value=18  Score=32.14  Aligned_cols=114  Identities=10%  Similarity=0.029  Sum_probs=58.9

Q ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCC---CeEEeCC
Q 029327           33 KRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTN---DFIILDD  109 (195)
Q Consensus        33 ~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~yg---DIi~~~d  109 (195)
                      ..+.+-|+|++.-....-.+.|+.--.+.        ....+.+++|-..++|.  + .+.+++=.+++.   .+..+. 
T Consensus        38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~--------yp~~~eIIVVDd~StD~--T-~~i~~~~~~~~~~~~~i~vi~-  105 (384)
T TIGR03469        38 AWPAVVAVVPARNEADVIGECVTSLLEQD--------YPGKLHVILVDDHSTDG--T-ADIARAAARAYGRGDRLTVVS-  105 (384)
T ss_pred             CCCCEEEEEecCCcHhHHHHHHHHHHhCC--------CCCceEEEEEeCCCCCc--H-HHHHHHHHHhcCCCCcEEEec-
Confidence            34556666766554333333333222111        11236777777666652  2 122222222333   344342 


Q ss_pred             CccCCcchHHHH---HHHHHHHhhcC-CceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327          110 HVEAPEELAKKM---KSFFVHAVEKW-DAEFYTKVNDDVYVNIDALGAALSSH  158 (195)
Q Consensus       110 f~DsY~nLt~Kt---l~~l~w~~~~c-~~~fvlK~DDDvfVn~~~L~~~L~~~  158 (195)
                      ..+.-.+-..|.   -.+++.+...+ +.+|++.+|+|+.+.++.|.+.+...
T Consensus       106 ~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~  158 (384)
T TIGR03469       106 GQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARA  158 (384)
T ss_pred             CCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHH
Confidence            112111223443   34566655554 38999999999999998888777654

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=84.75  E-value=29  Score=31.41  Aligned_cols=107  Identities=12%  Similarity=0.110  Sum_probs=61.8

Q ss_pred             CeeEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccC
Q 029327           34 RHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEA  113 (195)
Q Consensus        34 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~Ds  113 (195)
                      .+.+-|+|++.-+...-++.|+.- .+..        -.++.++.+-..+.+   ...+.+++..+++..+..+. ..  
T Consensus        74 ~p~vsViIP~yNE~~~i~~~l~sl-l~q~--------yp~~eIivVdDgs~D---~t~~~~~~~~~~~~~v~vv~-~~--  138 (444)
T PRK14583         74 HPLVSILVPCFNEGLNARETIHAA-LAQT--------YTNIEVIAINDGSSD---DTAQVLDALLAEDPRLRVIH-LA--  138 (444)
T ss_pred             CCcEEEEEEeCCCHHHHHHHHHHH-HcCC--------CCCeEEEEEECCCCc---cHHHHHHHHHHhCCCEEEEE-eC--
Confidence            456777777776544333444321 1111        124666555544443   23344555555666554331 11  


Q ss_pred             CcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327          114 PEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH  158 (195)
Q Consensus       114 Y~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~  158 (195)
                       .|. .|. .+++.....++.+|++..|.|+.+..+.|.+.+...
T Consensus       139 -~n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~  180 (444)
T PRK14583        139 -HNQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPL  180 (444)
T ss_pred             -CCC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHH
Confidence             122 232 456666677899999999999999999888877654

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=81.79  E-value=24  Score=28.02  Aligned_cols=77  Identities=9%  Similarity=0.069  Sum_probs=46.1

Q ss_pred             CceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHH
Q 029327           72 KGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDAL  151 (195)
Q Consensus        72 ~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L  151 (195)
                      ..+.++.+-+.+.+   .....+++..+++..+..+.+ ...  ...    .++..+.+....+|++.+|+|..+.++-|
T Consensus        30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~-~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l   99 (249)
T cd02525          30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDN-PKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYI   99 (249)
T ss_pred             CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeC-CCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHH
Confidence            45677777666554   233444544444444443321 111  111    34555555568999999999999998877


Q ss_pred             HHHHhcc
Q 029327          152 GAALSSH  158 (195)
Q Consensus       152 ~~~L~~~  158 (195)
                      ...+...
T Consensus       100 ~~~~~~~  106 (249)
T cd02525         100 LELVEAL  106 (249)
T ss_pred             HHHHHHH
Confidence            7777654

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 7e-05
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 44/163 (26%)

Query: 22  YLSQ-----NDTQHSKKRHLAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVV 76
           Y+ Q     ND Q   K +++         R +    +R+A       L EL+  K +++
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVS---------RLQPYLKLRQA-------LLELRPAKNVLI 155

Query: 77  RFVIGRSANHGD--------SFDTEIDSENSQTNDFII--LD-DHVEAPEELAKKMKSFF 125
                     G         + D  +  +     DF I  L+  +  +PE + + ++   
Sbjct: 156 ---------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 126 VHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGC 168
                 W +   +  + ++ + I ++ A L   L K + Y  C
Sbjct: 207 YQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLL-KSKPYENC 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
2j0a_A	280	Beta-1,3-N-acetylglucosaminyltransferase manic FR;	99.66
3bcv_A	240	Putative glycosyltransferase protein; protein stru	85.06
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	83.7
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	81.31

>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*

Probab=99.66  E-value=2.3e-16  Score=134.11  Aligned_cols=124  Identities=19%  Similarity=0.273  Sum_probs=84.6

Q ss_pred             CCCeeEEEEEECCCCC-HHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCC
Q 029327           32 KKRHLAVIGIITTFGR-KKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDH  110 (195)
Q Consensus        32 ~~~~~lli~V~S~p~~-~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df  110 (195)
                      ...-.|+|+|+|++++ ..|+.+||+||++.+..           .+||.+...+  +    .+...  ..++++ ..++
T Consensus        10 ~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~-----------~~fifsd~~d--~----~l~~~--~~~~~~-~~~~   69 (280)
T 2j0a_A           10 LQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ-----------QTFIFTDSPD--E----RLQER--LGPHLV-VTQC   69 (280)
T ss_dssp             CCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG-----------GEEEEESSCC--H----HHHHH--HGGGEE-ECCC
T ss_pred             CCcccEEEEEECcHHHHHHHHHHHHHHHhccCCC-----------ceEEEcCCCc--c----ccccc--ccccce-eccc
Confidence            3455688899999984 56889999999987521           1344443332  2    22222  235666 4355


Q ss_pred             c--cCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhccCCCCceEEEEeecCccee
Q 029327          111 V--EAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSHLDKPRVYIGCMKSGEVFS  176 (195)
Q Consensus       111 ~--DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~~~~R  176 (195)
                      .  +++.+++.|+...+++... -+++|++|+|||+||++++|+++|...++.+.+|+|+...+.|+|
T Consensus        70 ~~~~~~~~l~~K~~~~~~~~l~-~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~  136 (280)
T 2j0a_A           70 SAEHSHPALSCKMAAEFDAFLV-SGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIH  136 (280)
T ss_dssp             -------CCCHHHHHHHHHHHH-HTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-----
T ss_pred             cccccccchHHHHHHHHHHHhC-CCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCcccc
Confidence            4  3678899999998886531 289999999999999999999999999999999999965555665

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=85.06  E-value=7.7  Score=29.70  Aligned_cols=104  Identities=11%  Similarity=0.065  Sum_probs=58.3

Q ss_pred             eEEEEEECCCCCHHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCCc
Q 029327           36 LAVIGIITTFGRKKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAPE  115 (195)
Q Consensus        36 ~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY~  115 (195)
                      .+-|+|++.-....-+++|+.--.+.         ...+.++.|-..+++   ...+.+++-.+++..|..+ . .+   
T Consensus         6 ~vsViIp~yn~~~~l~~~l~Sl~~q~---------~~~~eiIvvDd~S~d---~t~~~~~~~~~~~~~i~~i-~-~~---   68 (240)
T 3bcv_A            6 KVSVIVPIYNVEKYLDQCVQALLAQT---------LSDIEIILIDDESPD---NCPKICDDYAAQYPNIKVI-H-KK---   68 (240)
T ss_dssp             SEEEEEEESSCTTTHHHHHHHHHTCS---------SSSEEEEEEECCCSS---SHHHHHHHHHHHCSSEEEE-E-CC---
T ss_pred             cEEEEEecCCCHHHHHHHHHHHHhCc---------CCCeEEEEEECCCCc---CHHHHHHHHHhhCCCEEEE-E-CC---
Confidence            45556666543333334443332221         124667776655544   2233444444556666545 2 22   


Q ss_pred             chHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327          116 ELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH  158 (195)
Q Consensus       116 nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~  158 (195)
                      |..  .-.+...+.+++..+|++.+|+|.++.++.|...+...
T Consensus        69 n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~  109 (240)
T 3bcv_A           69 NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVA  109 (240)
T ss_dssp             CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHH
T ss_pred             CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHH
Confidence            221  22344555666788999999999999988777766654

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=83.70  E-value=12  Score=32.33  Aligned_cols=110  Identities=8%  Similarity=-0.027  Sum_probs=58.6

Q ss_pred             CeeEEEEEECCCCC-HHHHHHHHHHHhccchhhhhhccCCceEEEEEeeecCCCCCchhhhchhhhcCCC-CeEEeCCCc
Q 029327           34 RHLAVIGIITTFGR-KKNRDAIREAWMSTGAALRELQDNKGIVVRFVIGRSANHGDSFDTEIDSENSQTN-DFIILDDHV  111 (195)
Q Consensus        34 ~~~lli~V~S~p~~-~~rR~aIR~TW~~~~~~~~~~~~~~~v~~vFvvG~~~~~~~~~~~~l~~E~~~yg-DIi~~~df~  111 (195)
                      .+.+-|+|++.-.. ..-+..|+.--.+..       ......++.|-..+.+  +...+.|++-.+.+. .+..+. ..
T Consensus        28 ~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~-------~~~~~EIIvVDd~S~d--~~t~~~l~~~~~~~~~~v~vi~-~~   97 (472)
T 1xhb_A           28 LPTTSVVIVFHNEAWSTLLRTVHSVINRSP-------RHMIEEIVLVDDASER--DFLKRPLESYVKKLKVPVHVIR-ME   97 (472)
T ss_dssp             CCCEEEEEEESSCCHHHHHHHHHHHHHSSC-------GGGEEEEEEEECSCCC--GGGTHHHHHHHHSSSSCEEEEE-CS
T ss_pred             CCCeEEEEEeCCCCHHHHHHHHHHHHhcCc-------HhHceEEEEEECCCCc--HHHHHHHHHHHHHCCCcEEEEE-CC
Confidence            34566667776544 333333333222211       0112355555544443  224345555555666 454442 22


Q ss_pred             cCCcchHHHHHHHHHHHhhcCCceEEEEEcCeeEeeHHHHHHHHhcc
Q 029327          112 EAPEELAKKMKSFFVHAVEKWDAEFYTKVNDDVYVNIDALGAALSSH  158 (195)
Q Consensus       112 DsY~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfVn~~~L~~~L~~~  158 (195)
                      ++. .+    -.++......+..+|++..|+|+.+.++-|...+...
T Consensus        98 ~n~-G~----~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~  139 (472)
T 1xhb_A           98 QRS-GL----IRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARI  139 (472)
T ss_dssp             SCC-CH----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHH
T ss_pred             CCC-Ch----HHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHH
Confidence            222 22    2344445556679999999999999988777766654

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=81.31  E-value=17  Score=28.07  Aligned_cols=88  Identities=14%  Similarity=0.067  Sum_probs=50.0

Q ss_pred             ceEEEEEeeecCCCCCchhhhchhhhcCCCCeEEeCCCccCC------cchHHHHHHHHHHHhhcCCceEEEEEcCeeEe
Q 029327           73 GIVVRFVIGRSANHGDSFDTEIDSENSQTNDFIILDDHVEAP------EELAKKMKSFFVHAVEKWDAEFYTKVNDDVYV  146 (195)
Q Consensus        73 ~v~~vFvvG~~~~~~~~~~~~l~~E~~~ygDIi~~~df~DsY------~nLt~Ktl~~l~w~~~~c~~~fvlK~DDDvfV  146 (195)
                      .+.++.|-..+++   ... .+.++......|..+. . +..      .|..  .-.++..+.+++..+|++..|+|.++
T Consensus        30 ~~eiivvDd~S~d---~t~-~~~~~~~~~~~i~~i~-~-~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~  101 (255)
T 1qg8_A           30 DFELFIMDDNSNE---ETL-NVIRPFLNDNRVRFYQ-S-DISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIY  101 (255)
T ss_dssp             CEEEEEEECSCCH---HHH-HHHGGGGGSTTEEEEE-C-CCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEE
T ss_pred             ceEEEEEECCCCc---hHH-HHHHHHhhcCCEEEEe-c-ccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCcc
Confidence            4667776655443   222 3333433355565442 1 100      2322  33456666677899999999999999


Q ss_pred             eHHHHHHHHhccC--CCCceEEEE
Q 029327          147 NIDALGAALSSHL--DKPRVYIGC  168 (195)
Q Consensus       147 n~~~L~~~L~~~~--~~~~ly~G~  168 (195)
                      .++.|...+....  +.-.+..|.
T Consensus       102 ~~~~l~~~~~~~~~~~~~~~v~~~  125 (255)
T 1qg8_A          102 MPDRLLKMVRELDTHPEKAVIYSA  125 (255)
T ss_dssp             CTTHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ChHHHHHHHHHHHhCCCceEEEec
Confidence            9887777665532  333444444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00