Citrus Sinensis ID: 029336

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRVNSATIAALAKLVCWET
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccHHHHHHHccccccHHHHHHHHHccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEcccccEEEEEccccHHHHHHHcccccHHHHHHHHHHcccHHHHHHHccccHHHHHHcccccccccccccccccEccccccccccccHHcccc
Coil and Loop (DISEMBL)
MGVSNNITAVLNFIALLCSIPiiasgiwlaskpdnecihlfrWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVvtrpdgsyyvpgraykeYRLDKFSSWLrdhvvdsknwNKIRACLADTDTCSKLSQQYVTADQffsahisplqgtrtascgattRVNSATIAALAKLVCWET
Flexible Loop (DISEMBL)
MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVtrpdgsyyvpgraykEYRLDKFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRVNSATIAALAKLVCWET
Low Complexity Region (SEG)
MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPvvllgvlvllvSLCGFIGAYWYKETLLAFYLCVMailivlllvvlvfafvvTRPDGSYYVPGRAYKEYRLDKFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRVNSATIAALAKLVCWET
Disordered region (IsUnstruct)
*****NITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRVNSATIAALAKLVCW**
Disordered Region (DISOPRED)
***SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRVNSATIAALAKLVCWET
Disordered Region (DISEMBL)
MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRVNSATIAALAKLVCWET
Disordered Region (DISPRO)
**VSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRVNSA****LAKL*****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRVNSATIAALAKLVCWET
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q9ZUN5	270	Tetraspanin-2 OS=Arabidop	yes	no	1.0	0.722	0.647	9e-60
Q8S8Q6	273	Tetraspanin-8 OS=Arabidop	no	no	0.835	0.597	0.436	4e-35
Q9FIQ5	269	Protein TORNADO 2 OS=Arab	no	no	0.851	0.617	0.487	7e-34
Q9M1E7	285	Tetraspanin-3 OS=Arabidop	no	no	0.851	0.582	0.368	4e-31
Q9SUD4	263	Tetraspanin-7 OS=Arabidop	no	no	0.835	0.619	0.375	7e-29
Q9C7C1	282	Tetraspanin-6 OS=Arabidop	no	no	0.779	0.539	0.415	5e-27
Q9M0B7	272	Tetraspanin-9 OS=Arabidop	no	no	0.774	0.555	0.392	6e-27
F4I214	284	Tetraspanin-10 OS=Arabido	no	no	0.851	0.584	0.341	1e-26
Q9LSS4	327	Tetraspanin-4 OS=Arabidop	no	no	0.851	0.507	0.327	3e-23
Q9LPR6	271	Tetraspanin-11 OS=Arabido	no	no	0.835	0.601	0.341	2e-19

>sp|Q9ZUN5|TET2_ARATH Tetraspanin-2 OS=Arabidopsis thaliana GN=TET2 PE=2 SV=1

 Score =  229 bits (584), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 132/204 (64%), Positives = 160/204 (78%), Gaps = 9/204 (4%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           M ++NN+TA+LN +ALLCSIPI ASGIWLASKPDNEC++L RWPVV+LGVL+L+VS  GF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           IGAY YKETLLA YLC MAILI LLLVVL+FAFVVTRPDGSY VPGR YKEYRL+ FS+W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFF-SAHISPLQG---TRTASCG-- 174
           L+++VVDSKNW ++RACLADT+ C KL+Q+++TADQFF S+ I+PLQ        +CG  
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 175 ---ATTRVNSATIAALAKLVCWET 195
               T  +N   +AA A    W  
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSN 204

May be involved in the regulation of cell differentiation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8Q6|TET8_ARATH Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 2/165 (1%)

Query: 4   SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGA 63
           SNN+  +LNF+  L SIPI+A GIWL+ K   EC      PV+ LGV +++V++ G IG+
Sbjct: 5   SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query: 64  YWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRD 123
                 LL  YL VM +LI+L+  + VFAFVVT       + G+ YKEY+L  +S+WL+ 
Sbjct: 65  CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query: 124 HVVDSKNWNKIRACLADTDTCSKLSQQYVT--ADQFFSAHISPLQ 166
            V + KNWNKIR+CL ++  CSKL  ++V    + F+  H++ LQ
Sbjct: 125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQ 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIQ5|TRN2_ARATH Protein TORNADO 2 OS=Arabidopsis thaliana GN=TRN2 PE=1 SV=1

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 106/166 (63%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           M +SNN+   +NFI +L SIP+I +GIWLA    N C+ L +WPV++LGVL+LLV L GF
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           IG +W    LL  YL  M ILIVLL  ++ F ++VT     +  P RAY EY L  FS W
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166
           LR  V  S  W +IR CL+ T  C +L+Q+Y  A  FF+AH+ P+Q
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQ 166

Involved in the basipetal transport of auxin (IAA) that modulates growth and organs organization, as well as cell differentiation. Regulates shoot apical meristem (SAM) organization in the peripheral zone. Required for initial meristematic divisions in the epidermal/lateral root cap leading to the formation of epidermal cells and a clone of lateral root cap cells, as well as for the maintenance of the radial pattern of cell specification in the root, thus regulating the distinction between the lateral root cap and epidermis. Together with WIH peptides, promotes megasporogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E7|TET3_ARATH Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1

 Score =  134 bits (336), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 105/171 (61%), Gaps = 5/171 (2%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDN-ECIHLFRWPVVLLGVLVLLVSLCG 59
           M  SN++  ++NF+  L SIPI+  GIWL+S+ ++ +C+   +WP++++G+ +++VSL G
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 60  FIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSS 119
           F GA +  + L+  YL VM ++I  L+  ++FA+ VT       V  R Y +Y L+ +S 
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 120 WLRDHVVDSKNWNKIRACLADTDTCSKLSQQY----VTADQFFSAHISPLQ 166
           WL+D V D   W KI +CL D+  C K+ + +     TAD FF   +SP++
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVE 171

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD4|TET7_ARATH Tetraspanin-7 OS=Arabidopsis thaliana GN=TET7 PE=2 SV=1

 Score =  126 bits (317), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 4   SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGA 63
           SNN+  +LNF   L SIPI+++GIWL      EC      P+V+LG+ ++ VS+ G +GA
Sbjct: 5   SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64

Query: 64  YWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRD 123
                 LL  YL  M +LI+L     +FAF VT       +  R YKEY +  +S+WL+ 
Sbjct: 65  CCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSNWLQK 124

Query: 124 HVVDSKNWNKIRACLADTDTCSKLSQQY--VTADQFFSAHISPLQ 166
            V ++KNW +IR+CL  +D CS    +Y  +  + F+ ++++ LQ
Sbjct: 125 RVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQ 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7C1|TET6_ARATH Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1

 Score =  120 bits (302), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 93/154 (60%), Gaps = 2/154 (1%)

Query: 4   SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGA 63
           SN +  VLN + LL SIPII + ++ A +    C +  + P++++G ++L+VSL GFIGA
Sbjct: 5   SNTVIGVLNLLTLLASIPIIGTALYKA-RSSTTCENFLQTPLLVIGFIILIVSLAGFIGA 63

Query: 64  YWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRD 123
            +     L  YL VM  LI  L+ + +F  VVT   G   VPGR YKEYRL  +  WLR+
Sbjct: 64  CFNVAWALWVYLVVMIFLIATLMGLTLFGLVVTSQGGGVEVPGRIYKEYRLGDYHPWLRE 123

Query: 124 HVVDSKNWNKIRACLADTDTCSKLSQQYVTADQF 157
            V D + WN IR+C+  + TC+K+ + + T D F
Sbjct: 124 RVRDPEYWNSIRSCILSSKTCTKI-ESWTTLDYF 156

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0B7|TET9_ARATH Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1

 Score =  120 bits (301), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 96/153 (62%), Gaps = 2/153 (1%)

Query: 4   SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGA 63
           SN++  +LNF   L S+PI+++GIWL+ K   +C      P++ LGV ++++++ G +G+
Sbjct: 5   SNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAGVVGS 64

Query: 64  YWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWLRD 123
                 LL  YL VM  LI+++L   +FAFVVT       + G+AYKEYRL+ +S WL+ 
Sbjct: 65  CCRVTWLLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSDWLQR 124

Query: 124 HVVDSKNWNKIRACLADTDTCSKLSQQYVTADQ 156
            V ++K+WN IR+CL ++  C  L  + VTA+ 
Sbjct: 125 RVNNAKHWNSIRSCLYESKFCYNL--ELVTANH 155

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I214|TET10_ARATH Tetraspanin-10 OS=Arabidopsis thaliana GN=TET10 PE=2 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 99/167 (59%), Gaps = 1/167 (0%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           MG S  +   +N + +L ++ +I  G+W+++  D  C     +PV+ LG  + L+S+ GF
Sbjct: 3   MGTSTFVIRWVNLLTMLLAVAVIIFGVWMSTHNDG-CRRSLTFPVIALGGFIFLISIIGF 61

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           +GA      LL  YL V+ I+++ +LV  V AF+VT     +  PG  YKEY+L+ +SSW
Sbjct: 62  LGACKRSVALLWIYLAVLLIVLIAILVFTVLAFIVTNNGSGHTNPGLRYKEYKLNDYSSW 121

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQG 167
               + ++ NW ++++CL  ++ C KLS++Y T  Q  SA ++P++ 
Sbjct: 122 FLKQLNNTSNWIRLKSCLVKSEQCRKLSKKYKTIKQLKSAELTPIEA 168

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSS4|TET4_ARATH Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 100/171 (58%), Gaps = 5/171 (2%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDN-ECIHLFRWPVVLLGVLVLLVSLCG 59
           M   +N+  ++NF   L SIPI+  GIWL+S+ ++ +C+   +WP++++G+ ++++SL G
Sbjct: 1   MRSRSNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAG 60

Query: 60  FIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSS 119
             GA +  + L+  YL  M  +I  L+   +FA+VVT      +V  R Y +Y L+ +S 
Sbjct: 61  IAGACYQNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSG 120

Query: 120 WLRDHVVDSKNWNKIRACLADTDTCSKLSQQY----VTADQFFSAHISPLQ 166
           WL+D V D+  W  I +C+ D+  C K+ +       TA  F+  ++SP++
Sbjct: 121 WLKDRVTDNGYWRDIGSCVRDSGVCKKIGRDLNGVPETAHMFYFRNLSPVE 171

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPR6|TET11_ARATH Tetraspanin-11 OS=Arabidopsis thaliana GN=TET11 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 4/167 (2%)

Query: 3   VSNNITAVLNFIALLCSIPIIASGIWL-ASKPDNECIHLFRWPVVLLGVLVLLVSLCGFI 61
           VSN +  + N + +L     I   I++   +   +C    R P++  G+++ LVSL G I
Sbjct: 4   VSNFMVGLANTLVMLVGASAIGYSIYMFVHQGVTDCESAIRIPLLTTGLILFLVSLLGVI 63

Query: 62  GAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSWL 121
           G+ + +   +  YL ++   IV L++  +F F VT       V GR YKEYR   FS+WL
Sbjct: 64  GSCFKENLAMVSYLIILFGGIVALMIFSIFLFFVTNKGAGRVVSGRGYKEYRTVDFSTWL 123

Query: 122 RDHVVDSKNWNKIRACLADTDTCSKLSQQYVT--ADQFFSAHISPLQ 166
            +  V  K W  IR+CLA+ + C  LS   V+  AD F+  ++SP+Q
Sbjct: 124 -NGFVGGKRWVGIRSCLAEANVCDDLSDGRVSQIADAFYHKNLSPIQ 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
224088023	269	predicted protein [Populus trichocarpa]	0.851	0.617	0.813	1e-70
225444948	269	PREDICTED: uncharacterized protein LOC10	0.851	0.617	0.789	6e-67
255546165	315	conserved hypothetical protein [Ricinus	0.861	0.533	0.773	6e-65
449446584	269	PREDICTED: uncharacterized protein LOC10	0.851	0.617	0.753	6e-62
357520691	269	hypothetical protein MTR_8g101600 [Medic	0.851	0.617	0.728	3e-58
388499794	269	unknown [Medicago truncatula]	0.851	0.617	0.728	3e-58
297832202	270	hypothetical protein ARALYDRAFT_899924 [	1.0	0.722	0.647	3e-58
15224802	270	tetraspanin2 [Arabidopsis thaliana] gi|7	1.0	0.722	0.647	4e-58
388514343	269	unknown [Lotus japonicus]	0.851	0.617	0.704	1e-54
356523882	269	PREDICTED: uncharacterized protein LOC10	0.851	0.617	0.746	1e-52

>gi|224088023|ref|XP_002308295.1| predicted protein [Populus trichocarpa] gi|118483296|gb|ABK93550.1| unknown [Populus trichocarpa] gi|222854271|gb|EEE91818.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/166 (81%), Positives = 150/166 (90%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           MGV+NNITAVLNFIA LCSIPIIA+GIWLASKP+NECIHLFRWPVVLLG L+LLVSL GF
Sbjct: 1   MGVANNITAVLNFIAFLCSIPIIAAGIWLASKPENECIHLFRWPVVLLGFLILLVSLAGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           +GAYWYKETLLAFYLC MAILI LLL++LVFAFVVTR DG Y VPGR Y+EYRL  FS+W
Sbjct: 61  VGAYWYKETLLAFYLCCMAILIGLLLILLVFAFVVTRADGGYDVPGRGYREYRLQGFSAW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166
           LR+HVV SKNW+KIR CLA+TD CSK++Q Y+TADQFF AHISPLQ
Sbjct: 121 LRNHVVYSKNWDKIRPCLAETDVCSKMTQNYITADQFFMAHISPLQ 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444948|ref|XP_002282397.1| PREDICTED: uncharacterized protein LOC100262870 [Vitis vinifera]

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 145/166 (87%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           M VSNNITAVLNF+ALLCSIPIIA+GIWLASKPDNECIHLFRWPV LLGVL+LLVSL GF
Sbjct: 1   MAVSNNITAVLNFLALLCSIPIIAAGIWLASKPDNECIHLFRWPVALLGVLILLVSLAGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           +GAYW K+ LLAFYL  M +LI LLL++LVFAFVV+  DGSY VPGRAYKEYRL+ FSSW
Sbjct: 61  VGAYWNKKGLLAFYLFCMGLLIGLLLILLVFAFVVSHSDGSYVVPGRAYKEYRLEGFSSW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166
           LR++V  S NWNKIR CLA +D CSKLSQ Y+TADQFF AHISPLQ
Sbjct: 121 LRNYVTKSGNWNKIRTCLAQSDVCSKLSQNYITADQFFMAHISPLQ 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546165|ref|XP_002514142.1| conserved hypothetical protein [Ricinus communis] gi|223546598|gb|EEF48096.1| conserved hypothetical protein [Ricinus communis]

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 130/168 (77%), Positives = 152/168 (90%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           MG++NNITA+LNFIA LCSIPIIASGIWLASKPDNECIH FRWP+V+LGVL+LLVSL GF
Sbjct: 1   MGLANNITAILNFIAFLCSIPIIASGIWLASKPDNECIHYFRWPLVILGVLILLVSLAGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           +GAYWYKETLLAFYLC MAILI L+L++LVFAFVVTR DG Y VPGR YKEYR++ FSSW
Sbjct: 61  VGAYWYKETLLAFYLCCMAILIGLILILLVFAFVVTRADGGYTVPGRGYKEYRVEGFSSW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGT 168
           L++H+VDSKNW KIR CL+++D CSKL Q Y+T+DQFF+AHISPLQ +
Sbjct: 121 LKNHIVDSKNWVKIRNCLSESDVCSKLIQNYITSDQFFAAHISPLQAS 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446584|ref|XP_004141051.1| PREDICTED: uncharacterized protein LOC101204213 [Cucumis sativus] gi|449488027|ref|XP_004157920.1| PREDICTED: uncharacterized protein LOC101223702 [Cucumis sativus]

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 125/166 (75%), Positives = 144/166 (86%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           MG+SNNITA+LNF+ALLCSIPII +GIWLASKPDNECIH FRWPVVL+GVL+LLVSL GF
Sbjct: 1   MGLSNNITAILNFLALLCSIPIIGAGIWLASKPDNECIHFFRWPVVLIGVLILLVSLAGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           IGAYW ++ LLAFYL  MA+LI LLLV+LVF FVVTRPDGSY V GR +KEYRLD FSSW
Sbjct: 61  IGAYWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166
           L+ H+ +S+NW KIR CLA++D C KL+QQY  ADQFF+A ISPLQ
Sbjct: 121 LKSHLTNSRNWPKIRTCLAESDVCPKLNQQYFAADQFFAADISPLQ 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520691|ref|XP_003630634.1| hypothetical protein MTR_8g101600 [Medicago truncatula] gi|355524656|gb|AET05110.1| hypothetical protein MTR_8g101600 [Medicago truncatula]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 121/166 (72%), Positives = 138/166 (83%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           MGVSNNITAVLN IA+L SIPIIASGIWLASKPDNECI  FRWP+V++G+LV LV+L GF
Sbjct: 1   MGVSNNITAVLNIIAILASIPIIASGIWLASKPDNECIANFRWPIVIIGILVFLVALTGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           IGAY+ KE LLA YL  MA+LI LLL++LVFAFVVTRPDGSY VP R YKE+RLD FSSW
Sbjct: 61  IGAYYNKEGLLALYLFAMALLIALLLIILVFAFVVTRPDGSYVVPDRGYKEFRLDGFSSW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166
           LR  V  S +W KI  CLA +D C KL+Q Y+TADQFF++HISPLQ
Sbjct: 121 LRHRVTGSGSWRKIMPCLAASDVCIKLTQNYITADQFFNSHISPLQ 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499794|gb|AFK37963.1| unknown [Medicago truncatula]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 121/166 (72%), Positives = 138/166 (83%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           MGVSNNITAVLN IA+L SIPIIASGIWLASKPDNECI  FRWP+V++G+LV LV+L GF
Sbjct: 1   MGVSNNITAVLNIIAILASIPIIASGIWLASKPDNECIANFRWPIVIIGILVFLVALTGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           IGAY+ KE LLA YL  MA+LI LLL++LVFAFVVTRPDGSY VP R YKE+RLD FSSW
Sbjct: 61  IGAYYNKEGLLALYLFAMALLIALLLIILVFAFVVTRPDGSYVVPDRGYKEFRLDGFSSW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166
           LR  V  S +W KI  CLA +D C KL+Q Y+TADQFF++HISPLQ
Sbjct: 121 LRHRVTGSGSWRKIMPCLAASDVCIKLTQNYITADQFFNSHISPLQ 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832202|ref|XP_002883983.1| hypothetical protein ARALYDRAFT_899924 [Arabidopsis lyrata subsp. lyrata] gi|297329823|gb|EFH60242.1| hypothetical protein ARALYDRAFT_899924 [Arabidopsis lyrata subsp. lyrata]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 132/204 (64%), Positives = 161/204 (78%), Gaps = 9/204 (4%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           M ++NN+TA+LN +ALLCSIPI ASGIWLASKPDNEC++L RWPVV+LGVL+L+VS  GF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           IGAY YKETLLA YLC MAILI LLLVVL+FAFVVTRPDGSY VPGR YKEYRL+ FS+W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFF-SAHISPLQG---TRTASCG-- 174
           L+++VVDSKNW ++RACLADT+ C KL+Q+++TADQFF S+ I+PLQ       ++CG  
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPSACGYN 180

Query: 175 ---ATTRVNSATIAALAKLVCWET 195
               T  +N   +AA A    W  
Sbjct: 181 FVNPTLWLNPTNMAADADCYIWSN 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224802|ref|NP_179548.1| tetraspanin2 [Arabidopsis thaliana] gi|75268040|sp|Q9ZUN5.1|TET2_ARATH RecName: Full=Tetraspanin-2 gi|4191796|gb|AAD10165.1| putative senescence-associated protein 5 [Arabidopsis thaliana] gi|40822966|gb|AAR92249.1| At2g19580 [Arabidopsis thaliana] gi|46518389|gb|AAS99676.1| At2g19580 [Arabidopsis thaliana] gi|110737940|dbj|BAF00907.1| putative senescence-associated protein 5 [Arabidopsis thaliana] gi|330251803|gb|AEC06897.1| tetraspanin2 [Arabidopsis thaliana]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/204 (64%), Positives = 160/204 (78%), Gaps = 9/204 (4%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           M ++NN+TA+LN +ALLCSIPI ASGIWLASKPDNEC++L RWPVV+LGVL+L+VS  GF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           IGAY YKETLLA YLC MAILI LLLVVL+FAFVVTRPDGSY VPGR YKEYRL+ FS+W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFF-SAHISPLQG---TRTASCG-- 174
           L+++VVDSKNW ++RACLADT+ C KL+Q+++TADQFF S+ I+PLQ        +CG  
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 175 ---ATTRVNSATIAALAKLVCWET 195
               T  +N   +AA A    W  
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSN 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514343|gb|AFK45233.1| unknown [Lotus japonicus]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/166 (70%), Positives = 140/166 (84%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           MGVSNNITAVLNFIA+L SIPIIASGIWLAS PDN+CI  FRWP+V++G+L+LLVSL GF
Sbjct: 1   MGVSNNITAVLNFIAMLSSIPIIASGIWLASNPDNQCITNFRWPIVIIGLLILLVSLAGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           +GAYW K+ LLA YL  MA+LI LLL++LVFAFVVT+PDGSY VPGR YKEY LD+FSSW
Sbjct: 61  VGAYWNKQGLLALYLFSMALLIALLLILLVFAFVVTKPDGSYDVPGRGYKEYTLDRFSSW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166
           LR+HV  S +W KIR CLA +D C  L++ Y+T DQF ++H+SPLQ
Sbjct: 121 LRNHVTGSGSWRKIRPCLAASDVCINLARNYITPDQFLNSHLSPLQ 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523882|ref|XP_003530563.1| PREDICTED: uncharacterized protein LOC100815633 [Glycine max]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/166 (74%), Positives = 142/166 (85%)

Query: 1   MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGF 60
           MGVSNNITAVLN IA L SIPIIASGIWLASKPDNEC+  FRWP+V++G+L+LLVSL GF
Sbjct: 1   MGVSNNITAVLNLIATLASIPIIASGIWLASKPDNECVANFRWPIVIIGILILLVSLAGF 60

Query: 61  IGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDKFSSW 120
           +GAYW K+ LLA YL  MA+LI LLL+VLVFAFVVTRPDG+Y VPGR YKEYRL  FSSW
Sbjct: 61  VGAYWNKQGLLALYLFCMALLIALLLLVLVFAFVVTRPDGAYDVPGRGYKEYRLHGFSSW 120

Query: 121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ 166
           LR+HV  S +W KIR CLA +D CSKL+Q Y+TADQFF++HISPLQ
Sbjct: 121 LRNHVTGSGSWQKIRPCLAASDVCSKLTQDYITADQFFNSHISPLQ 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2050354	270	TET2 "AT2G19580" [Arabidopsis	0.989	0.714	0.539	1e-52
TAIR|locus:2178570	269	TRN2 "AT5G46700" [Arabidopsis	0.902	0.654	0.379	4.4e-29
TAIR|locus:2048982	273	TET8 "AT2G23810" [Arabidopsis	0.835	0.597	0.351	1.2e-24
TAIR|locus:2085692	285	TET3 "AT3G45600" [Arabidopsis	0.851	0.582	0.327	1.1e-23
TAIR|locus:2099272	282	TET6 "AT3G12090" [Arabidopsis	0.779	0.539	0.357	1.3e-20
TAIR|locus:2132992	263	TET7 "AT4G28050" [Arabidopsis	0.835	0.619	0.309	1.7e-20
TAIR|locus:2144050	327	TET4 "tetraspanin4" [Arabidops	0.882	0.525	0.283	4.4e-20
TAIR|locus:2038488	284	TET10 "tetraspanin10" [Arabido	0.887	0.609	0.282	6.5e-19
TAIR|locus:2118696	272	TET9 "AT4G30430" [Arabidopsis	0.789	0.566	0.320	8.3e-19
TAIR|locus:2014054	271	TET11 "AT1G18520" [Arabidopsis	0.830	0.597	0.303	3.8e-14

TAIR|locus:2050354 TET2 "AT2G19580" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 109/202 (53%), Positives = 133/202 (65%)

Query:     1 MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPXXXXXXXXXXXSLCGF 60
             M ++NN+TA+LN +ALLCSIPI ASGIWLASKPDNEC++L RWP           S  GF
Sbjct:     1 MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query:    61 IGAYWYKETLLAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSSW 120
             IGAY YKETLLA YLC M                 TRPDGSY VPGR YKEYRL+ FS+W
Sbjct:    61 IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query:   121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH-ISPLQG---TRTASCG-- 174
             L+++VVDSKNW ++RACLADT+ C KL+Q+++TADQFFS+  I+PLQ        +CG  
Sbjct:   121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query:   175 ---ATTRVNSATIAALAKLVCW 193
                 T  +N   +AA A    W
Sbjct:   181 FVNPTLWLNPTNMAADADCYLW 202

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2178570 TRN2 "AT5G46700" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 68/179 (37%), Positives = 86/179 (48%)

Query:     1 MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPXXXXXXXXXXXSLCGF 60
             M +SNN+   +NFI +L SIP+I +GIWLA    N C+ L +WP            L GF
Sbjct:     1 MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query:    61 IGAYWYKETLLAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSSW 120
             IG +W    LL  YL  M                 T     +  P RAY EY L  FS W
Sbjct:    61 IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query:   121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQG---TRTASCGAT 176
             LR  V  S  W +IR CL+ T  C +L+Q+Y  A  FF+AH+ P+Q         CG T
Sbjct:   121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFT 179

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0010015 "root morphogenesis" evidence=RCA;IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2048982 TET8 "AT2G23810" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 58/165 (35%), Positives = 82/165 (49%)

Query:     4 SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPXXXXXXXXXXXSLCGFIGA 63
             SNN+  +LNF+  L SIPI+A GIWL+ K   EC      P           ++ G IG+
Sbjct:     5 SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query:    64 YWYKETLLAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSSWLRD 123
                   LL  YL VM                 T       + G+ YKEY+L  +S+WL+ 
Sbjct:    65 CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query:   124 HVVDSKNWNKIRACLADTDTCSKLSQQYVTA--DQFFSAHISPLQ 166
              V + KNWNKIR+CL ++  CSKL  ++V    + F+  H++ LQ
Sbjct:   125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQ 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2085692 TET3 "AT3G45600" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 56/171 (32%), Positives = 84/171 (49%)

Query:     1 MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDN-ECIHLFRWPXXXXXXXXXXXSLCG 59
             M  SN++  ++NF+  L SIPI+  GIWL+S+ ++ +C+   +WP           SL G
Sbjct:     1 MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query:    60 FIGAYWYKETLLAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSS 119
             F GA +  + L+  YL VM                 T       V  R Y +Y L+ +S 
Sbjct:    61 FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query:   120 WLRDHVVDSKNWNKIRACLADTDTCSKLSQQY----VTADQFFSAHISPLQ 166
             WL+D V D   W KI +CL D+  C K+ + +     TAD FF   +SP++
Sbjct:   121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVE 171

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2099272 TET6 "AT3G12090" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 55/154 (35%), Positives = 74/154 (48%)

Query:     4 SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPXXXXXXXXXXXSLCGFIGA 63
             SN +  VLN + LL SIPII + ++ A +    C +  + P           SL GFIGA
Sbjct:     5 SNTVIGVLNLLTLLASIPIIGTALYKA-RSSTTCENFLQTPLLVIGFIILIVSLAGFIGA 63

Query:    64 YWYKETLLAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSSWLRD 123
              +     L  YL VM                 T   G   VPGR YKEYRL  +  WLR+
Sbjct:    64 CFNVAWALWVYLVVMIFLIATLMGLTLFGLVVTSQGGGVEVPGRIYKEYRLGDYHPWLRE 123

Query:   124 HVVDSKNWNKIRACLADTDTCSKLSQQYVTADQF 157
              V D + WN IR+C+  + TC+K+ + + T D F
Sbjct:   124 RVRDPEYWNSIRSCILSSKTCTKI-ESWTTLDYF 156

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2132992 TET7 "AT4G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 51/165 (30%), Positives = 76/165 (46%)

Query:     4 SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPXXXXXXXXXXXSLCGFIGA 63
             SNN+  +LNF   L SIPI+++GIWL      EC      P           S+ G +GA
Sbjct:     5 SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64

Query:    64 YWYKETLLAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSSWLRD 123
                   LL  YL  M                 T       +  R YKEY +  +S+WL+ 
Sbjct:    65 CCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSNWLQK 124

Query:   124 HVVDSKNWNKIRACLADTDTCSKLSQQY--VTADQFFSAHISPLQ 166
              V ++KNW +IR+CL  +D CS    +Y  +  + F+ ++++ LQ
Sbjct:   125 RVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQ 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2144050 TET4 "tetraspanin4" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 51/180 (28%), Positives = 82/180 (45%)

Query:     5 NNITAVLNFIALLCSIPIIASGIWLASKPDN-ECIHLFRWPXXXXXXXXXXXSLCGFIGA 63
             +N+  ++NF   L SIPI+  GIWL+S+ ++ +C+   +WP           SL G  GA
Sbjct:     5 SNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAGIAGA 64

Query:    64 YWYKETLLAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSSWLRD 123
              +  + L+  YL  M                 T      +V  R Y +Y L+ +S WL+D
Sbjct:    65 CYQNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSGWLKD 124

Query:   124 HVVDSKNWNKIRACLADTDTCSKLSQQY----VTADQFFSAHISPLQG---TRTASCGAT 176
              V D+  W  I +C+ D+  C K+ +       TA  F+  ++SP++         CG T
Sbjct:   125 RVTDNGYWRDIGSCVRDSGVCKKIGRDLNGVPETAHMFYFRNLSPVESGCCKPPTDCGYT 184

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2038488 TET10 "tetraspanin10" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 50/177 (28%), Positives = 84/177 (47%)

Query:     1 MGVSNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPXXXXXXXXXXXSLCGF 60
             MG S  +   +N + +L ++ +I  G+W+++  D  C     +P           S+ GF
Sbjct:     3 MGTSTFVIRWVNLLTMLLAVAVIIFGVWMSTHNDG-CRRSLTFPVIALGGFIFLISIIGF 61

Query:    61 IGAYWYKETLLAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSSW 120
             +GA      LL  YL V+                 T     +  PG  YKEY+L+ +SSW
Sbjct:    62 LGACKRSVALLWIYLAVLLIVLIAILVFTVLAFIVTNNGSGHTNPGLRYKEYKLNDYSSW 121

Query:   121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQG--TRTAS-CG 174
                 + ++ NW ++++CL  ++ C KLS++Y T  Q  SA ++P++    R  S CG
Sbjct:   122 FLKQLNNTSNWIRLKSCLVKSEQCRKLSKKYKTIKQLKSAELTPIEAGCCRPPSECG 178

GO:0005576 "extracellular region" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2118696 TET9 "AT4G30430" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 50/156 (32%), Positives = 76/156 (48%)

Query:     4 SNNITAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPXXXXXXXXXXXSLCGFIGA 63
             SN++  +LNF   L S+PI+++GIWL+ K   +C      P           ++ G +G+
Sbjct:     5 SNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAGVVGS 64

Query:    64 YWYKETLLAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSSWLRD 123
                   LL  YL VM                 T       + G+AYKEYRL+ +S WL+ 
Sbjct:    65 CCRVTWLLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSDWLQR 124

Query:   124 HVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS 159
              V ++K+WN IR+CL ++  C  L  + VTA+   S
Sbjct:   125 RVNNAKHWNSIRSCLYESKFCYNL--ELVTANHTVS 158

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014054 TET11 "AT1G18520" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 51/168 (30%), Positives = 73/168 (43%)

Query:     3 VSNNITAVLNFIALLCSIPIIASGIWL-ASKPDNECIHLFRWPXXXXXXXXXXXSLCGFI 61
             VSN +  + N + +L     I   I++   +   +C    R P           SL G I
Sbjct:     4 VSNFMVGLANTLVMLVGASAIGYSIYMFVHQGVTDCESAIRIPLLTTGLILFLVSLLGVI 63

Query:    62 GAYWYKETL-LAFYLCVMXXXXXXXXXXXXXXXXXTRPDGSYYVPGRAYKEYRLDKFSSW 120
             G+  +KE L +  YL ++                 T       V GR YKEYR   FS+W
Sbjct:    64 GSC-FKENLAMVSYLIILFGGIVALMIFSIFLFFVTNKGAGRVVSGRGYKEYRTVDFSTW 122

Query:   121 LRDHVVDSKNWNKIRACLADTDTCSKLSQQYVT--ADQFFSAHISPLQ 166
             L   V   K W  IR+CLA+ + C  LS   V+  AD F+  ++SP+Q
Sbjct:   123 LNGFV-GGKRWVGIRSCLAEANVCDDLSDGRVSQIADAFYHKNLSPIQ 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUN5	TET2_ARATH	No assigned EC number	0.6470	1.0	0.7222	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0112005901 SubName- Full=Putative uncharacterized protein; (269 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	6e-17

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 75.1 bits (185), Expect = 6e-17
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 18/148 (12%)

Query: 4   SNNITAVLNFIALLCSIPIIASGIWLASK-------PDNECIHLFRWPVVLLGVLVLLVS 56
              +  +LN + LL  + ++A GIWL            N+ I      +++LGV++LLV 
Sbjct: 2   LKYLLFLLNLLFLLLGLALLAVGIWLLVIAKDYLAIALNDSIRALYILIIVLGVIILLVG 61

Query: 57  LCGFIGAYWYKETLLAFYLCVMAILIVLLLVVLVFAFVVTRPDGSYYVPGRAYKEYRLDK 116
             G  GA      LL  Y  ++ IL +L +   + AFV      S    G          
Sbjct: 62  FLGCCGAIKESRCLLLTYFILLLILFILEIAAGILAFVYRDKLESSLKEGL--------- 112

Query: 117 FSSWLRDHVVDSKNWNKIRACLADTDTC 144
             ++      D  N  +    L  +  C
Sbjct: 113 --NYKDKSYNDDPNLTEAIDELQKSLEC 138

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG3882	237	consensus Tetraspanin family integral membrane pro	99.97
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	99.79
cd03163	105	TM4SF8_like_LEL Tetraspanin, extracellular domain	99.05
cd03161	104	TM4SF2_6_like_LEL Tetraspanin, extracellular domai	99.04
cd03166	99	CD63_LEL Tetraspanin, extracellular domain or larg	98.97
cd03158	119	penumbra_like_LEL Tetraspanin, extracellular domai	98.95
cd03167	120	oculospanin_like_LEL Tetraspanin, extracellular do	98.92
cd03159	121	TM4SF9_like_LEL Tetraspanin, extracellular domain	98.92
cd03154	100	TM4SF3_like_LEL Tetraspanin, extracellular domain	98.83
cd03156	114	uroplakin_I_like_LEL Tetraspanin, extracellular do	98.81
cd03162	143	peripherin_like_LEL Tetraspanin, extracellular dom	98.78
cd03160	117	CD37_CD82_like_LEL Tetraspanin, extracellular doma	98.76
cd03165	98	NET-5_like_LEL Tetraspanin, extracellular domain o	98.74
cd03155	110	CD151_like_LEL Tetraspanin, extracellular domain o	98.71
cd03157	103	TM4SF12_like_LEL Tetraspanin, extracellular domain	98.65
cd03164	86	CD53_like_LEL Tetraspanin, extracellular domain or	98.61
cd03127	90	tetraspanin_LEL Tetraspanin, extracellular domain	98.43
cd03152	84	CD9_LEL Tetraspanin, extracellular domain or large	98.23
cd03151	84	CD81_like_LEL Tetraspanin, extracellular domain or	96.57
PRK12585	197	putative monovalent cation/H+ antiporter subunit G	88.12
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.83
PF11297	69	DUF3098: Protein of unknown function (DUF3098); In	85.69
COG4993	773	Gcd Glucose dehydrogenase [Carbohydrate transport	80.38
KOG4433	526	consensus Tweety transmembrane/cell surface protei	80.13

>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]

Probab=99.97  E-value=1.5e-30  Score=215.08  Aligned_cols=170  Identities=18%  Similarity=0.296  Sum_probs=131.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhHhheeecCCc--chhh--hhh--hHHHHHHHHHHHHHHhhhhhhhccCchhhHHHH
Q 029336            2 GVSNNITAVLNFIALLCSIPIIASGIWLASKPDN--ECIH--LFR--WPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYL   75 (195)
Q Consensus         2 ~~~k~~l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~--~~~~--~~~--~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~   75 (195)
                      ++.||+++++|+++|++|++++++|+|++.++..  ....  +..  ..++++|.+++++|++||+||.|||+|+|.+|+
T Consensus         7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~   86 (237)
T KOG3882|consen    7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYF   86 (237)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHH
Confidence            6899999999999999999999999999998631  1110  122  228999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhheeeecCCCc--c-ccccccccccccc-ch---hhhHHHhcccccCcccccceeccCCcCCCcc
Q 029336           76 CVMAILIVLLLVVLVFAFVVTRPDGS--Y-YVPGRAYKEYRLD-KF---SSWLRDHVVDSKNWNKIRACLADTDTCSKLS  148 (195)
Q Consensus        76 ~~l~vl~i~el~~~i~~~~~~~~~~~--~-~~~~~~~~~Y~~~-d~---~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~  148 (195)
                      +++++++++|++++++++++++++++  + +..++.++.|+++ |.   .|.+|++++         |||+     ++|+
T Consensus        87 ~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~---------CCG~-----~~~~  152 (237)
T KOG3882|consen   87 ILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELK---------CCGV-----NGYS  152 (237)
T ss_pred             HHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhcc---------CCcC-----CCch
Confidence            99999999999999999999988776  3 3455667778776 32   399999999         9999     9998


Q ss_pred             ccccchhhhhhcCC-CCCCCCCCCCCCCCcCCChhhHhhhhcccccc
Q 029336          149 QQYVTADQFFSAHI-SPLQGTRTASCGATTRVNSATIAALAKLVCWE  194 (195)
Q Consensus       149 Dw~~~~~~~~~~~~-~p~~~g~p~~C~~~~~~~t~~~~~~~~~~c~~  194 (195)
                      ||.+.      ... .|.+||.+   ..+.....-....+++.||.+
T Consensus       153 ~~~~~------~~~~vP~SCC~~---~~~~~~~~~~~~~~~~~GC~~  190 (237)
T KOG3882|consen  153 DYFNC------SSNNVPPSCCKR---TRRQKFPQDVPDNIYTEGCLE  190 (237)
T ss_pred             HHhcC------CCCCCCcccCCC---cccccccccchhhhhccccHH
Confidence            87542      111 56566522   001111123456689999976

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=99.79  E-value=4.5e-21  Score=152.97  Aligned_cols=137  Identities=26%  Similarity=0.399  Sum_probs=23.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhHhheee-cCC-cch----hhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHH
Q 029336            3 VSNNITAVLNFIALLCSIPIIASGIWLAS-KPD-NEC----IHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLC   76 (195)
Q Consensus         3 ~~k~~l~~~N~~f~l~Gi~ll~~Gi~~~~-~~~-~~~----~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~   76 (195)
                      |+|++++++|++++++|++++++|+|+.. ... ...    .......++++|.++++++++|++|+.+|||+++..|.+
T Consensus         1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~   80 (221)
T PF00335_consen    1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII   80 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence            68999999999999999999999999942 211 111    111222367789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhheeeecCCCccc--cc-cccccccccc----chhhhHHHhcccccCcccccceeccCCcCCCccc
Q 029336           77 VMAILIVLLLVVLVFAFVVTRPDGSYY--VP-GRAYKEYRLD----KFSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQ  149 (195)
Q Consensus        77 ~l~vl~i~el~~~i~~~~~~~~~~~~~--~~-~~~~~~Y~~~----d~~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~D  149 (195)
                      ++++++++|++++++++.++++..+..  .. ....+.+..+    +..|.+|++++         |||.     ++++|
T Consensus        81 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~---------CCG~-----~~~~d  146 (221)
T PF00335_consen   81 LLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFE---------CCGV-----NSPDD  146 (221)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT-----------SS-----TTCHH
T ss_pred             chhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheeccccccc---------ccCC-----CCCcc
Confidence            999999999999999999887654411  11 0111222222    12288999999         9999     99999


Q ss_pred             cccc
Q 029336          150 QYVT  153 (195)
Q Consensus       150 w~~~  153 (195)
                      |...
T Consensus       147 ~~~~  150 (221)
T PF00335_consen  147 WFTS  150 (221)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9654

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily

Probab=99.05  E-value=2.9e-11  Score=87.63  Aligned_cols=83  Identities=14%  Similarity=0.201  Sum_probs=53.7

Q ss_pred             heeeecCCCc--ccccccccccccccc-h---hhhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh---cCC
Q 029336           92 AFVVTRPDGS--YYVPGRAYKEYRLDK-F---SSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS---AHI  162 (195)
Q Consensus        92 ~~~~~~~~~~--~~~~~~~~~~Y~~~d-~---~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~---~~~  162 (195)
                      +|++++++.+  ++.+.+.+++|..++ .   -|.+|++|+         |||+     ++|+||..+  .|++   ...
T Consensus         1 ~~v~~~~v~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~~~   64 (105)
T cd03163           1 GYVYRAKVEDELNPSIDKVFNKYNGTNAESRAVDYLQRQLQ---------CCGI-----HNYTDWENT--PWFKESKNNS   64 (105)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCc---------ccCC-----CCHHHHhhc--hhhhcCCCCc
Confidence            3567776655  344556677776432 2   299999999         9999     999999765  4443   234


Q ss_pred             CCCCCC--CCCCCCCCcCCChhhHhhhhcccccc
Q 029336          163 SPLQGT--RTASCGATTRVNSATIAALAKLVCWE  194 (195)
Q Consensus       163 ~p~~~g--~p~~C~~~~~~~t~~~~~~~~~~c~~  194 (195)
                      .|.+||  +...|+.....    ...+++.||.+
T Consensus        65 vP~SCC~~~~~~C~~~~~~----~~~i~~~GC~~   94 (105)
T cd03163          65 VPLSCCKETFTSCTGSLTQ----PKDLYQEGCEA   94 (105)
T ss_pred             cCcCccCCCCCCcccCCCC----CCchhhhccHH
Confidence            688888  23357643221    12478999975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.

>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily

Probab=99.04  E-value=2.8e-11  Score=87.35  Aligned_cols=86  Identities=14%  Similarity=0.215  Sum_probs=54.9

Q ss_pred             eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCCC
Q 029336           93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ  166 (195)
Q Consensus        93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~~  166 (195)
                      |++++++.+  ++.+.+++++|..+ +.+   |.+|++|+         |||+     ++|+||..+  .+++....|.+
T Consensus         1 ~v~r~~i~~~l~~~l~~~i~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~vP~S   64 (104)
T cd03161           1 FVFRHEIKGTFLRTYNEAVSNYNGDDERSDAVDTVQRTLH---------CCGV-----ENYTDWLNS--PYFLEKGIPLS   64 (104)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhcCc---------CcCC-----CChhhhhcc--ccccCCCcCcc
Confidence            356666554  34555667777643 222   89999999         9999     999999765  44433457888


Q ss_pred             CCC-CCCCCCCcCC-ChhhHhhhhcccccc
Q 029336          167 GTR-TASCGATTRV-NSATIAALAKLVCWE  194 (195)
Q Consensus       167 ~g~-p~~C~~~~~~-~t~~~~~~~~~~c~~  194 (195)
                      ||. +..|+....+ .+.-...+|+.||.+
T Consensus        65 CC~~~~~C~~~~~~~~~~~~~~i~~~GC~~   94 (104)
T cd03161          65 CCKNRSDCSPQDLKNLTKAATKVYQQGCFT   94 (104)
T ss_pred             cccCCCCCCccccccccccccccchhccHH
Confidence            883 3357643221 112234588999975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.

>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family

Probab=98.97  E-value=8.6e-11  Score=84.28  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=51.8

Q ss_pred             eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCCC
Q 029336           93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQ  166 (195)
Q Consensus        93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~~  166 (195)
                      |++++++.+  ++.+.+++++|+.+ +.+   |.+|++|+         |||+     ++|+||..+  .+......|.+
T Consensus         1 ~v~r~~v~~~i~~~l~~~~~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~vP~S   64 (99)
T cd03166           1 YVFRDKVMSEFNDSFNQMISNYNKTNDFRKILDRMQKDLK---------CCGA-----NNYTDWENI--PSLDTDSVPDS   64 (99)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------ccCC-----CChhhhhcc--cCCCCCCCCcC
Confidence            355665554  34455667777644 222   89999999         9999     999999754  22223456888


Q ss_pred             CC--CCCCCCCCcCCChhhHhhhhcccccc
Q 029336          167 GT--RTASCGATTRVNSATIAALAKLVCWE  194 (195)
Q Consensus       167 ~g--~p~~C~~~~~~~t~~~~~~~~~~c~~  194 (195)
                      ||  +...|+....     ...+|+.||++
T Consensus        65 CC~~~~~~C~~~~~-----~~~~y~~GC~~   89 (99)
T cd03166          65 CCINVTKGCGINFD-----EKVIHLEGCVT   89 (99)
T ss_pred             ccCcCCCCcccCCC-----ccchHHhcCHH
Confidence            87  3345764321     23578999975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.

>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family

Probab=98.95  E-value=1.2e-10  Score=86.60  Aligned_cols=86  Identities=14%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh-------
Q 029336           93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS-------  159 (195)
Q Consensus        93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~-------  159 (195)
                      |++++++++  ++.+.+++++|..+ +++   |.+|++|+         |||+     ++|+||..+  .++.       
T Consensus         1 ~v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~d~lQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~~~~   64 (119)
T cd03158           1 FIFSNQTIDLLEENIRKAIVHYYDDLDLQNIIDFVQKEFK---------CCGG-----DDYRDWSKN--MYFNCSSPNPE   64 (119)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHcc---------CCCC-----CChhhcccc--cccccCCCCCc
Confidence            356666554  34556667776543 322   99999999         9999     999999754  4432       


Q ss_pred             cCCCCCCCC-CC-------CCCCCCcCCC--hhhHhhhhcccccc
Q 029336          160 AHISPLQGT-RT-------ASCGATTRVN--SATIAALAKLVCWE  194 (195)
Q Consensus       160 ~~~~p~~~g-~p-------~~C~~~~~~~--t~~~~~~~~~~c~~  194 (195)
                      ....|.+|| .+       ..|+......  +.-...+|+.||.+
T Consensus        65 ~~~vP~SCC~~~~~~~~~~~~C~~~~~~~~~~~~~~~i~~~GC~~  109 (119)
T cd03158          65 ACGVPYSCCIRAKDQEVINTMCGYGVQNLERLEASKLIYTRGCID  109 (119)
T ss_pred             CCCcCcCcccCCCCccccccCcCCCcccccchhhcCcccccchHH
Confidence            124688888 22       2476532111  22345689999985

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.

>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family

Probab=98.92  E-value=1.7e-10  Score=86.06  Aligned_cols=84  Identities=15%  Similarity=0.099  Sum_probs=51.4

Q ss_pred             eecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhc-------C
Q 029336           95 VTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSA-------H  161 (195)
Q Consensus        95 ~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~-------~  161 (195)
                      +++++++  .+.+.+++++|..+ +.+   |.+|++|+         |||+     ++|+||..+  .|+..       .
T Consensus         3 ~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~~~~~~   66 (120)
T cd03167           3 LWGPLQDGLEHTLRLAIAHYQDDPDLRFLIDQVQLGLQ---------CCGA-----SSYQDWQQN--LYFNCSSPGVQAC   66 (120)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc---------CCCC-----CChHHhccc--ccccCCCCCCCCC
Confidence            4444433  23445566666543 222   99999999         9999     999999754  44431       2


Q ss_pred             CCCCCCC--C-------CCCCCCCcCCC--hhhHhhhhcccccc
Q 029336          162 ISPLQGT--R-------TASCGATTRVN--SATIAALAKLVCWE  194 (195)
Q Consensus       162 ~~p~~~g--~-------p~~C~~~~~~~--t~~~~~~~~~~c~~  194 (195)
                      ..|.+||  +       +..|+......  +.....+|+.||.+
T Consensus        67 ~vP~SCC~~~~~~~~~~~~~C~~~~~~~~~~~~~~~iy~~GC~~  110 (120)
T cd03167          67 SLPASCCIDPREDGAVVNDQCGFGALGLDEDAAQRVVHLGGCGP  110 (120)
T ss_pred             CCCcCccCCCccccccccCCCCCCccccccchhcccchhccCHH
Confidence            4677777  2       23576432211  23445689999975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.

>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily

Probab=98.92  E-value=1.4e-10  Score=86.32  Aligned_cols=86  Identities=16%  Similarity=0.214  Sum_probs=54.0

Q ss_pred             eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh-------
Q 029336           93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS-------  159 (195)
Q Consensus        93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~-------  159 (195)
                      |++++++++  ++.+.++++.|..+ +.+   |.+|++|+         |||+     ++|+||..+  .++.       
T Consensus         1 ~v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~D~iQ~~l~---------CCG~-----~~~~DW~~~--~~~~~~~~~~~   64 (121)
T cd03159           1 FVFKDWIKDQLTEFLNNNIRAYRDDIDLQNLIDFLQEYWQ---------CCGA-----RGPDDWNLN--IYFNCTDSNPS   64 (121)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcc---------CCCC-----CChHHhccc--ccccccCCCCC
Confidence            456666654  34556677777643 332   99999999         9999     999999755  4432       


Q ss_pred             --cCCCCCCCCC--------CCCCCCCcCCC--hhhHhhhhcccccc
Q 029336          160 --AHISPLQGTR--------TASCGATTRVN--SATIAALAKLVCWE  194 (195)
Q Consensus       160 --~~~~p~~~g~--------p~~C~~~~~~~--t~~~~~~~~~~c~~  194 (195)
                        ....|.+||.        ...|+......  ......+|+.||.+
T Consensus        65 ~~~~~vP~SCC~~~~~~~~~~~~C~~~~~~~~~~~~~~~i~~~GC~~  111 (121)
T cd03159          65 RERCGVPFSCCVKDPAEDVVNTQCGYDVRKKPELELQHHIHTKGCVQ  111 (121)
T ss_pred             CCCCCCCcccccCCcccccccCccCccccccccccccCCchHhhCHH
Confidence              1246777773        33576422100  12234579999975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.

>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily

Probab=98.83  E-value=4.8e-10  Score=80.50  Aligned_cols=81  Identities=9%  Similarity=-0.039  Sum_probs=54.5

Q ss_pred             HhhheeeecCCCc--cccccccccccccc--chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcC
Q 029336           89 LVFAFVVTRPDGS--YYVPGRAYKEYRLD--KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAH  161 (195)
Q Consensus        89 ~i~~~~~~~~~~~--~~~~~~~~~~Y~~~--d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~  161 (195)
                      ||++|++++++.+  ++.+.+++++|..+  +.+   |.+|++|+         |||+     ++|.||..        +
T Consensus         1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~~~~~~~~d~lQ~~l~---------CCG~-----~~~~d~~~--------~   58 (100)
T cd03154           1 GIVGAVYKPKIENELKEKNTKLLSLLGQNAKSVKKSLEKFQKELK---------CCGL-----VNGADDWG--------N   58 (100)
T ss_pred             CEEEEEeHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC---------CCCC-----CCchhhcc--------C
Confidence            5788999988766  45566777777543  332   99999999         9999     99888853        2


Q ss_pred             CCCCCC-C-CCCCCCCCcCCChhhHhhhhcccccc
Q 029336          162 ISPLQG-T-RTASCGATTRVNSATIAALAKLVCWE  194 (195)
Q Consensus       162 ~~p~~~-g-~p~~C~~~~~~~t~~~~~~~~~~c~~  194 (195)
                      ..|.+| + ++..|+...   ..-...+++.||++
T Consensus        59 ~vP~SCcc~~~~~c~~~~---~~~~~~~~~~GC~~   90 (100)
T cd03154          59 DIPASCNCTTTQSDCVVA---YYGGSNVYKEPCIS   90 (100)
T ss_pred             CCCCCCcCCCCCCCcccc---cCCCcCccccccHH
Confidence            467787 4 444454210   11123578889975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.

>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family

Probab=98.81  E-value=3.4e-10  Score=82.71  Aligned_cols=83  Identities=11%  Similarity=0.088  Sum_probs=51.7

Q ss_pred             heeeecCCCc--cccccccccccccc--chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh-----
Q 029336           92 AFVVTRPDGS--YYVPGRAYKEYRLD--KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS-----  159 (195)
Q Consensus        92 ~~~~~~~~~~--~~~~~~~~~~Y~~~--d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~-----  159 (195)
                      ++++++++++  ++.+.+.+++|..+  +.+   |.+|++|+         |||+     ++|+||..+  .++.     
T Consensus         2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~~   65 (114)
T cd03156           2 ALFFKKDLEDSFKNLLKNNYGNYNSTGDAITSTWNRVMIELK---------CCGV-----NGPTDFVDS--TSFFRQKNE   65 (114)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccc---------CcCC-----CCcHHHHhh--hHHhccCCC
Confidence            4566666554  34556667766532  333   99999999         9999     999999765  4432     


Q ss_pred             -cCCCCCCCCCCC-------CCCCCcCCChhhHhhhhcccccc
Q 029336          160 -AHISPLQGTRTA-------SCGATTRVNSATIAALAKLVCWE  194 (195)
Q Consensus       160 -~~~~p~~~g~p~-------~C~~~~~~~t~~~~~~~~~~c~~  194 (195)
                       ....|.+||.+.       .|+.    ...-...+++.||.+
T Consensus        66 ~~~~vP~SCC~~~~~~~~~~~~~~----~~~~~~~~~~~GC~~  104 (114)
T cd03156          66 PNSPYPESCCKRNSNSQIVDLDCP----KLGSPNSYNKKGCYE  104 (114)
T ss_pred             CCCcCCHHHcCcccccccccccCC----CCCcchhhhhcCchH
Confidence             345677777221       1221    112234589999975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma

>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family

Probab=98.78  E-value=6.7e-10  Score=85.44  Aligned_cols=46  Identities=11%  Similarity=0.056  Sum_probs=32.7

Q ss_pred             eeecCCCc--ccccccccccccccc------hh---hhHHHhcccccCcccccceeccCCcCCCccccccc
Q 029336           94 VVTRPDGS--YYVPGRAYKEYRLDK------FS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVT  153 (195)
Q Consensus        94 ~~~~~~~~--~~~~~~~~~~Y~~~d------~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~  153 (195)
                      ++++++.+  ++.+.++++.|+.++      .+   |.+|++|+         |||+     ++|+||..+
T Consensus         2 v~rd~l~~~L~~~L~~~i~~Y~~~~~~~~~~~~~~~D~lQ~~fk---------CCG~-----~~y~DW~~~   58 (143)
T cd03162           2 IMRGSLEESLKTGLKNAMKFYKDTDTPGRCFLKKTIDMLQIEFQ---------CCGN-----NGYRDWFEI   58 (143)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhcc---------CCCC-----CChhhhhhh
Confidence            45555544  345566777776542      33   99999999         9999     999999653

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her

>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family

Probab=98.76  E-value=1e-09  Score=81.08  Aligned_cols=83  Identities=8%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             heeeecCCCc--cccccccccccccc----chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhc--
Q 029336           92 AFVVTRPDGS--YYVPGRAYKEYRLD----KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSA--  160 (195)
Q Consensus        92 ~~~~~~~~~~--~~~~~~~~~~Y~~~----d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~--  160 (195)
                      +|++++++++  ++.+.+++++|..+    +.+   |.+|++|+         |||+     ++|+||..+  .++..  
T Consensus         1 ~~v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~   64 (117)
T cd03160           1 IYFQRDKLKQEMGDIVEKVIQNYGGNPENKTAEEAWDYVQFQLQ---------CCGW-----TGPQDWTDN--SLIKNSS   64 (117)
T ss_pred             CceeHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhhCc---------ccCC-----CCchhHHhc--hhccCCC
Confidence            3677777665  34556667776542    222   89999999         9999     999999754  33321  


Q ss_pred             -CCCCCCCCC-C----------CCCCCCcCCChhhHhhhhcccccc
Q 029336          161 -HISPLQGTR-T----------ASCGATTRVNSATIAALAKLVCWE  194 (195)
Q Consensus       161 -~~~p~~~g~-p----------~~C~~~~~~~t~~~~~~~~~~c~~  194 (195)
                       ...|.+||. .          ..|+....+    ...+|+.||.+
T Consensus        65 ~~~vP~SCC~~~~~~~~~~~~~~~C~~~~~~----~~~iy~~GC~~  106 (117)
T cd03160          65 EPLYPCSCCNSSATADSPRPSKGFCEAPASL----DWPVYQEGCME  106 (117)
T ss_pred             CCCCCHhhhcCCccccccCCCCcccCCCCcc----ccchHHHhhHH
Confidence             246778872 1          135432110    23478999975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos

>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family

Probab=98.74  E-value=9.3e-10  Score=78.57  Aligned_cols=77  Identities=13%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             eeecCCCc--cccccccccccccc---chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCC
Q 029336           94 VVTRPDGS--YYVPGRAYKEYRLD---KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPL  165 (195)
Q Consensus        94 ~~~~~~~~--~~~~~~~~~~Y~~~---d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~  165 (195)
                      ++++++.+  .+.+.+++++|+.+   +.+   |.+|++|+         |||+     ++|+||..+    ......|.
T Consensus         2 v~r~~~~~~i~~~l~~~~~~y~~~~~~~~~~~~d~~Q~~l~---------CCG~-----~~~~Dw~~~----~~~~~vP~   63 (98)
T cd03165           2 VFREKVDLTAKDDLKEGLELYGTRNNRGLTNAWDITQTEFR---------CCGV-----TNYTDWYEV----LGENRVPD   63 (98)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCc---------CcCC-----CChhHHHHh----cCCCCCCH
Confidence            45555543  34455667777643   222   89999999         9999     999999653    11234677


Q ss_pred             CCC--CCCCCCCCcCCChhhHhhhhcccccc
Q 029336          166 QGT--RTASCGATTRVNSATIAALAKLVCWE  194 (195)
Q Consensus       166 ~~g--~p~~C~~~~~~~t~~~~~~~~~~c~~  194 (195)
                      +||  .+..|+....      ..+++.||.+
T Consensus        64 SCC~~~~~~C~~~~~------~~~~~~GC~~   88 (98)
T cd03165          64 SCCQEDSQDCGRNPT------ELWWKTGCYE   88 (98)
T ss_pred             hhcCCCccccccCCc------cchHHhhhHH
Confidence            777  3335753211      3478999975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.

>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family

Probab=98.71  E-value=2.3e-09  Score=78.22  Aligned_cols=82  Identities=12%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             eeeecCCCc--cccccccccc-cccc---chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhh----
Q 029336           93 FVVTRPDGS--YYVPGRAYKE-YRLD---KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFS----  159 (195)
Q Consensus        93 ~~~~~~~~~--~~~~~~~~~~-Y~~~---d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~----  159 (195)
                      |++++++++  .+.+.+++++ |..+   +.+   |.+|++|+         |||+     ++|+||..+  .|++    
T Consensus         1 ~v~~~~~~~~i~~~l~~~i~~~y~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--~~~~~~~~   64 (110)
T cd03155           1 YTYYQQLEDELKESLKRTMQENYGQSGEEALTLTVDELQQEFK---------CCGS-----NNYTDWQDS--EWINSNEA   64 (110)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCc---------CcCC-----CChhhhhhc--cccccCCC
Confidence            345555554  3445566665 5432   222   99999999         9999     999999765  4542    


Q ss_pred             -cCCCCCCCC--CCCCCCCCcCCChhhHhhhhc--ccccc
Q 029336          160 -AHISPLQGT--RTASCGATTRVNSATIAALAK--LVCWE  194 (195)
Q Consensus       160 -~~~~p~~~g--~p~~C~~~~~~~t~~~~~~~~--~~c~~  194 (195)
                       ....|.+||  ....|+....    -...+++  .||.+
T Consensus        65 ~~~~vP~SCC~~~~~~c~~~~~----~~~~~~~~~~GC~~  100 (110)
T cd03155          65 NGRLVPDSCCKTVVDRCGCLRD----HPSNIYKVEGGCIP  100 (110)
T ss_pred             CCCCCCccccCCCCCCcccccC----ChhccccccCChHH
Confidence             123566666  2223542111    1234677  89975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and

>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family

Probab=98.65  E-value=8.1e-09  Score=75.25  Aligned_cols=71  Identities=10%  Similarity=0.162  Sum_probs=46.9

Q ss_pred             cccccccccccc--c-hh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCCCCC--CCCCCCC
Q 029336          104 VPGRAYKEYRLD--K-FS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGT--RTASCGA  175 (195)
Q Consensus       104 ~~~~~~~~Y~~~--d-~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~~~g--~p~~C~~  175 (195)
                      .+.+++++|+.+  + .+   |.+|++|+         |||+     ++|+||..+    ...+..|.+||  +...|+.
T Consensus        15 ~l~~~~~~Y~~~~~~~~~~~~D~iQ~~l~---------CCG~-----~~~~DW~~~----~~~~~vP~SCC~~~~~~C~~   76 (103)
T cd03157          15 SLKSRMSNFGLQRYQWLTHAWNSFQTEFK---------CCGV-----IYFTDWLEM----TEMEWPPDSCCSNQYPGCAR   76 (103)
T ss_pred             HHHHHHHHHCCCCchhHHHHHHHHHHhcc---------CccC-----CChhHHhcc----CCCCCCCccccCCCCCCcCc
Confidence            455667778753  2 22   99999999         9999     999999653    11133799999  3446874


Q ss_pred             CcCCChhhHhhhhcccccc
Q 029336          176 TTRVNSATIAALAKLVCWE  194 (195)
Q Consensus       176 ~~~~~t~~~~~~~~~~c~~  194 (195)
                      ......  ...+|+.||++
T Consensus        77 ~~~~~~--~~~iy~~GC~~   93 (103)
T cd03157          77 QAHYND--LSDLYQEGCGP   93 (103)
T ss_pred             CCCCcc--cccccccchHH
Confidence            321111  23489999975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).

>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family

Probab=98.61  E-value=4.2e-09  Score=73.65  Aligned_cols=45  Identities=13%  Similarity=0.146  Sum_probs=31.3

Q ss_pred             eeeecCCCc--cccccccccccccc-chh---hhHHHhcccccCcccccceeccCCcCCCccccc
Q 029336           93 FVVTRPDGS--YYVPGRAYKEYRLD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQY  151 (195)
Q Consensus        93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~  151 (195)
                      |++++++.+  .+.+.+++++|..+ +.+   |.+|++|+         |||+     ++|+||.
T Consensus         1 ~v~~~~v~~~i~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~   51 (86)
T cd03164           1 FVYEKKLNNYVKEGLTDSLEQYHKDNNTSEAWDMIQSNLQ---------CCGI-----NGTTDWG   51 (86)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhc---------CCCC-----CChhhhC
Confidence            345555543  34555667777543 222   89999999         9999     9999994

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.

>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL)

Probab=98.43  E-value=2.4e-08  Score=69.38  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=38.5

Q ss_pred             cccccccccccc-ch---hhhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCCCCCCCCCCCCCCCcCC
Q 029336          104 VPGRAYKEYRLD-KF---SSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHISPLQGTRTASCGATTRV  179 (195)
Q Consensus       104 ~~~~~~~~Y~~~-d~---~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~p~~~g~p~~C~~~~~~  179 (195)
                      .+.+++++|..+ +.   -|.+|++|+         |||+     ++++||...      ....|.+|+++..+.     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~d~iq~~l~---------CCG~-----~~~~D~~~~------~~~vP~SCc~~~~~~-----   68 (90)
T cd03127          14 TLNDAWDEYYVDDDFQEAMDALQSTFE---------CCGV-----NGPTDYLDL------RLLVPSSCCKGTDGN-----   68 (90)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhCc---------CcCC-----CChHHHccC------CCCCCHhhcCCCCCC-----
Confidence            344556665432 22   288999998         9999     999999642      244566665222211     


Q ss_pred             ChhhHhhhhcccccc
Q 029336          180 NSATIAALAKLVCWE  194 (195)
Q Consensus       180 ~t~~~~~~~~~~c~~  194 (195)
                      ..   ..+++.||.+
T Consensus        69 ~~---~~~~~~GC~~   80 (90)
T cd03127          69 CG---LNLYTEGCLE   80 (90)
T ss_pred             Cc---cchhhHccHH
Confidence            10   3478889975

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr

>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family

Probab=98.23  E-value=1.8e-07  Score=65.18  Aligned_cols=44  Identities=11%  Similarity=0.074  Sum_probs=30.4

Q ss_pred             eeeecCCCc--cccccccccccccc-c--h---hhhHHHhcccccCcccccceeccCCcCCCcccc
Q 029336           93 FVVTRPDGS--YYVPGRAYKEYRLD-K--F---SSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQ  150 (195)
Q Consensus        93 ~~~~~~~~~--~~~~~~~~~~Y~~~-d--~---~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw  150 (195)
                      |++++++.+  ++.+.+++++|+.+ +  .   .|.+|++|+         |||+     ++|.||
T Consensus         1 ~v~r~~v~~~i~~~~~~~~~~y~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~D~   52 (84)
T cd03152           1 FSNKDKVVKEVQTFYRQTYAKYKQSRDPPLKETLKAIHFALD---------CCGP-----TGGLEQ   52 (84)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHc---------CCCC-----CCCccc
Confidence            355666544  34455667776653 2  2   288999999         9999     999999

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as

>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily

Probab=96.57  E-value=0.00026  Score=49.28  Aligned_cols=45  Identities=13%  Similarity=0.079  Sum_probs=29.5

Q ss_pred             eeecCCCc--cccccccccccccc---c---hhhhHHHhcccccCcccccceeccCCcCCCcccccc
Q 029336           94 VVTRPDGS--YYVPGRAYKEYRLD---K---FSSWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYV  152 (195)
Q Consensus        94 ~~~~~~~~--~~~~~~~~~~Y~~~---d---~~d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~  152 (195)
                      ++++++..  .+.+.+.+++|..+   +   ..|.+|++|+         |||.     ++|+|+..
T Consensus         2 v~r~~v~~~i~~~l~~~~~~y~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~d~~~   54 (84)
T cd03151           2 INKDQIIKEVQNFYDSAYQDAVTDTRSKGTAVLKTFHSTLD---------CCGK-----GNLTALLS   54 (84)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHhcC---------CCCC-----CCCcchHH
Confidence            45555443  23445566666442   2   2289999999         9999     99999753

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).

>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed

Probab=88.12  E-value=2.3  Score=34.30  Aligned_cols=54  Identities=13%  Similarity=0.070  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeecCCcchhhhh-hhHHHHHHHHHHHHHHhhhh
Q 029336            8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLF-RWPVVLLGVLVLLVSLCGFI   61 (195)
Q Consensus         8 l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~-~~pli~~G~~~~~vs~lG~~   61 (195)
                      +-++-.+|+++|.+++.+|..-...-++.+.+.- ....-.+|+.++++|.++..
T Consensus         5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~   59 (197)
T PRK12585          5 IEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYF   59 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHH
Confidence            4455667788888888777765554222222221 11144556666666665543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.83  E-value=1.2  Score=35.19  Aligned_cols=19  Identities=37%  Similarity=0.618  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHhHhh
Q 029336           10 VLNFIALLCSIPIIASGIW   28 (195)
Q Consensus        10 ~~N~~f~l~Gi~ll~~Gi~   28 (195)
                      +.+++..++|+++++.|+-
T Consensus         6 i~~i~~iilgilli~~gI~   24 (191)
T PF04156_consen    6 IISIILIILGILLIASGIA   24 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555543

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function

Probab=85.69  E-value=1.1  Score=30.20  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHhHhheeecC
Q 029336           11 LNFIALLCSIPIIASGIWLASKP   33 (195)
Q Consensus        11 ~N~~f~l~Gi~ll~~Gi~~~~~~   33 (195)
                      -|.+++++|++++++|-++..-+
T Consensus         6 ~Nyill~iG~~vIilGfilMsg~   28 (69)
T PF11297_consen    6 KNYILLAIGIAVIILGFILMSGG   28 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHheeCC
Confidence            58999999999999999987753

>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]

Probab=80.38  E-value=6.9  Score=37.14  Aligned_cols=63  Identities=22%  Similarity=0.487  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHhheeecCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHH
Q 029336            8 TAVLNFIALLCSIPIIASGIWLASKPDNECIHLFRWPVVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAIL   81 (195)
Q Consensus         8 l~~~N~~f~l~Gi~ll~~Gi~~~~~~~~~~~~~~~~pli~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl   81 (195)
                      +-+.-+++.++|+++++-|+|+..-+.+       .-.++.|+.+++.+++    .+|++|.-|.+|..+++.-
T Consensus         3 ~~~~~~~~~~~gl~l~~gg~~l~~lggs-------~yy~iagl~~l~~~~l----l~~~k~aal~lya~~~~~t   65 (773)
T COG4993           3 VTLTALVIALCGLALLIGGIWLVALGGS-------WYYLIAGLVLLLSAWL----LLRRKRAALWLYALVLLGT   65 (773)
T ss_pred             hhHHHHHHHHHHHHHhccceeEEeeCCc-------hHHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHH
Confidence            3456678899999999999998776421       1134567777777766    5677777788887766544

>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]

Probab=80.13  E-value=4.2  Score=37.21  Aligned_cols=43  Identities=30%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             hhH-HHHHHHHHHHHHHhhhhhhhccCchhhHHHHHHHHHHHHH
Q 029336           42 RWP-VVLLGVLVLLVSLCGFIGAYWYKETLLAFYLCVMAILIVL   84 (195)
Q Consensus        42 ~~p-li~~G~~~~~vs~lG~~Ga~~es~~lL~~y~~~l~vl~i~   84 (195)
                      .|| .+++=.+.+++.++++.|-.|+|||+++.|.++=++++++
T Consensus       209 RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi  252 (526)
T KOG4433|consen  209 RWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI  252 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence            455 4555677888999999999999999999988765555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
1g8q_A	90	CD81 antigen, extracellular domain; alpha helical,	98.37

>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A

Probab=98.37  E-value=1.5e-08  Score=70.13  Aligned_cols=71  Identities=14%  Similarity=0.085  Sum_probs=42.7

Q ss_pred             eeeecCCCc--cccccccccccc---cc-chh---hhHHHhcccccCcccccceeccCCcCCCccccccchhhhhhcCCC
Q 029336           93 FVVTRPDGS--YYVPGRAYKEYR---LD-KFS---SWLRDHVVDSKNWNKIRACLADTDTCSKLSQQYVTADQFFSAHIS  163 (195)
Q Consensus        93 ~~~~~~~~~--~~~~~~~~~~Y~---~~-d~~---d~lQ~~~~~~~~w~~~~CCG~~~~~c~~~~Dw~~~~~~~~~~~~~  163 (195)
                      |++++++.+  ++.+.+++++|.   .+ +.+   |.+|++|+         |||+     ++|+||...        ..
T Consensus         1 fv~~~~v~~~l~~~l~~~~~~y~~~~~~~~~~~~~d~iQ~~l~---------CCG~-----~~~~Dw~~~--------~v   58 (90)
T 1g8q_A            1 FVNKDQIAKDVKQFYDQALQQAVVDDDANNAKAVVKTFHETLD---------CCGS-----STLTALTTS--------VL   58 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---------CCSC-----TTCGGGHHH--------HH
T ss_pred             CccHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHhhc---------CCCC-----CChhhhccC--------CC
Confidence            345555543  344556677753   22 222   89999999         9999     999999531        13


Q ss_pred             CCCCCCCCCCCCCcCCChhhHhhhhcccccc
Q 029336          164 PLQGTRTASCGATTRVNSATIAALAKLVCWE  194 (195)
Q Consensus       164 p~~~g~p~~C~~~~~~~t~~~~~~~~~~c~~  194 (195)
                      |.+||++.      .+   ....+++.||.+
T Consensus        59 P~ScC~~~------~~---~~~~~~~~GC~~   80 (90)
T 1g8q_A           59 KNNLCPSG------SN---IISNLFKEDCHQ   80 (90)
T ss_dssp             HTTCSCTT------CC---HHHHHTSCCHHH
T ss_pred             CCCCCCCC------CC---CcccCccCCcHH
Confidence            33344211      11   234689999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00