Citrus Sinensis ID: 029340

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEVLLISLWLYFQI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHccEEEEEc
Coil and Loop (DISEMBL)
MAAARnvaagdgsrvfrdeeesvngkvkegdesptakrfkserfplthWEFAAFVGVFLLFVTGLFCIYltmpaadygklklprTIADLRLLKDNLAtyaqdypvpfiIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKligrplvswfwpekLRFFQAEVLLISLWLYFQI
Flexible Loop (DISEMBL)
maaarnvaagdgsrvfrdeeesvngkvkegdesptakrfkserFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEVLLISLWLYFQI
Low Complexity Region (SEG)
MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEfaafvgvfllfvtglfCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEVLLISLWLYFQI
Disordered region (IsUnstruct)
******************************************RFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEVLLISLWLYF**
Disordered Region (DISOPRED)
*************************************************EFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEVLLISLWLYFQI
Disordered Region (DISEMBL)
***********************************AKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEVLLISLWLYFQI
Disordered Region (DISPRO)
******************************************RFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEVLLISLWLYFQI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEVLLISLWLYFQI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q8L586	287	Uncharacterized membrane	yes	no	0.943	0.641	0.712	7e-75
Q5U4K5	278	Transmembrane protein 41B	N/A	no	0.805	0.564	0.335	1e-16
Q8MXN7	334	Transmembrane protein 41	yes	no	0.702	0.410	0.357	2e-16
Q08D99	264	Transmembrane protein 41A	yes	no	0.676	0.5	0.333	2e-16
Q8K1A5	291	Transmembrane protein 41B	yes	no	0.815	0.546	0.333	3e-16
Q9VX39	320	Transmembrane protein 41	yes	no	0.620	0.378	0.362	3e-16
Q5RBZ8	291	Transmembrane protein 41B	yes	no	0.820	0.549	0.310	4e-16
A1A5V7	282	Transmembrane protein 41B	yes	no	0.861	0.595	0.300	7e-16
Q5ZIL6	269	Transmembrane protein 41B	yes	no	0.625	0.453	0.376	1e-15
Q5BJD5	291	Transmembrane protein 41B	yes	no	0.625	0.419	0.376	2e-15

>sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1

 Score =  279 bits (714), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 134/188 (71%), Positives = 154/188 (81%), Gaps = 4/188 (2%)

Query: 1   MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEFAAFVG 56
           MAA RN+    G+R + +DEE        +G   D+SPT KR KSERFPL+ WEFA F  
Sbjct: 1   MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFT 60

Query: 57  VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
           VFL+F TGLFCIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+GYCSTYI
Sbjct: 61  VFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYI 120

Query: 117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
           FMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEK
Sbjct: 121 FMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEK 180

Query: 177 LRFFQAEV 184
           LRFFQAE+
Sbjct: 181 LRFFQAEI 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q5U4K5|TM41B_XENLA Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 19  EEESVNG----KVKEGDE--SPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTM 72
            E S  G    +   G+E  +P A +  SE            V +FL   + +F +Y   
Sbjct: 4   HERSHTGGHTFQCNHGNEKKAPAAGKVHSEGGS-ARMSLLILVSIFLCAASVMFLVYKYF 62

Query: 73  PA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFM 129
           P     +  K+K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+
Sbjct: 63  PQLSEEELEKIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAYFTTYIFLQTFAIPGSIFL 122

Query: 130 SLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
           S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  +  +K
Sbjct: 123 SILSGFLYPFPLALFLVCLCSGLGASFCYLLSYLVGRPVVYKYLSDK 169

Xenopus laevis (taxid: 8355)

>sp|Q8MXN7|TM41_DICDI Transmembrane protein 41 homolog OS=Dictyostelium discoideum GN=DDB_G0275543 PE=3 SV=2

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 73/137 (53%)

Query: 45  PLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYP 104
           PL  W      GV +  +  LF  + ++       ++LP+   D++LL D L+ Y  D  
Sbjct: 96  PLPLWLLVIVFGVSISVIVFLFLNFPSLSPQHKQLIRLPKNFKDVKLLSDILSQYTDDNY 155

Query: 105 VPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLI 164
              I  +   Y F+Q F IPG++F+S L+G LFG+  G  LV F AT GA+  + +S  I
Sbjct: 156 FIVITTFGVIYTFLQAFSIPGSVFLSFLSGGLFGLKVGFPLVCFVATLGATFSYLISYYI 215

Query: 165 GRPLVSWFWPEKLRFFQ 181
           GR LV   +P+KL+ F 
Sbjct: 216 GRNLVRKLFPDKLKLFS 232

Dictyostelium discoideum (taxid: 44689)

>sp|Q08D99|TM41A_BOVIN Transmembrane protein 41A OS=Bos taurus GN=TMEM41A PE=2 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 12/144 (8%)

Query: 53  AFVGVFLLFVTGLFCIYLT----------MPAADYGKLKL--PRTIADLRLLKDNLATYA 100
           + +G+ L+F    F +YL           + A + G   L  P  +A+LR L + L  Y 
Sbjct: 3   SLLGLLLVFAGSTFALYLLSTRLPRASTLVSAEESGDRSLWFPSDLAELRELSEVLREYR 62

Query: 101 QDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFL 160
           +++ V   + +CS Y++ Q+F IPG+ F+++LAGALFG   GL+L     + GA+ C+ L
Sbjct: 63  KEHQVYVFLLFCSAYLYKQSFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATGCYLL 122

Query: 161 SKLIGRPLVSWFWPEKLRFFQAEV 184
           S + G+ LV +++P+K+   Q +V
Sbjct: 123 SSVFGKQLVVFYFPDKVALLQKKV 146

Bos taurus (taxid: 9913)

>sp|Q8K1A5|TM41B_MOUSE Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=2 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 12  GSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLT 71
           G R  R +  +  G     +E P A+   S R  L        V +F      +F +Y  
Sbjct: 21  GDRAVRTQGSAAPGSKDHLNEKPCAEA-GSARTSLL-----ILVSIFSCAAFVMFLVYKN 74

Query: 72  MPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIF 128
            P     +   +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF
Sbjct: 75  FPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIF 134

Query: 129 MSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
           +S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  +  EK
Sbjct: 135 LSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 182

Mus musculus (taxid: 10090)

>sp|Q9VX39|TM41_DROME Transmembrane protein 41 homolog OS=Drosophila melanogaster GN=CG8408 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 3/124 (2%)

Query: 56  GVFLLFVTGLFCIYLTMP---AADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYC 112
           G+F+  +  +  +Y   P   A++   LK+PR I D ++L   L  Y   Y    + G  
Sbjct: 87  GIFVASLVTMCYVYAIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVV 146

Query: 113 STYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWF 172
             Y+F+QTF IPG++F+S+L G L+     L L+ F +  GA+ C+ LS L+GR L+  F
Sbjct: 147 VAYVFLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGRRLIRHF 206

Query: 173 WPEK 176
           WP+K
Sbjct: 207 WPKK 210

Drosophila melanogaster (taxid: 7227)

>sp|Q5RBZ8|TM41B_PONAB Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1

 Score = 84.7 bits (208), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 1   MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAA------- 53
           M A      GDG+   R            G  +P ++ ++ E+     W  A        
Sbjct: 12  MGADHTTPVGDGAAGTR------------GPAAPGSRDYQKEK----SWAEAGSARMSLL 55

Query: 54  -FVGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFII 109
             V +FL     +F +Y   P     +   +K+PR + D + L   L+ Y   + V  ++
Sbjct: 56  ILVSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLV 115

Query: 110 GYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLV 169
            Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V
Sbjct: 116 AYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVV 175

Query: 170 SWFWPEK 176
             +  EK
Sbjct: 176 YKYLTEK 182

Pongo abelii (taxid: 9601)

>sp|A1A5V7|TM41B_DANRE Transmembrane protein 41B OS=Danio rerio GN=tmem41b PE=2 SV=1

 Score = 83.6 bits (205), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 5/173 (2%)

Query: 17  RDEEES--VNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPA 74
           R+ E S  V  + +   E+P  K  +S             V +F      ++ ++   P 
Sbjct: 9   RETESSPLVEQEPRPSKETPVPKGAQSPGGASARMSILLLVVIFACSACVMYLVFRNFPQ 68

Query: 75  ---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSL 131
               +  K+K+P+ + D + L   L+ Y   Y    ++ Y +TYIF+QTF IPG+IF+S+
Sbjct: 69  LSEDEREKIKIPKDMEDAKALGTVLSKYKDTYYTQVLLAYFATYIFLQTFAIPGSIFLSI 128

Query: 132 LAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
           L+G L+     L LV   +  GAS C+ LS L+GRP+V  +  E+ + +  +V
Sbjct: 129 LSGYLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPMVYKYLTERAQKWSQQV 181

Danio rerio (taxid: 7955)

>sp|Q5ZIL6|TM41B_CHICK Transmembrane protein 41B OS=Gallus gallus GN=TMEM41B PE=2 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 3/125 (2%)

Query: 55  VGVFLLFVTGLFCIYLTMP--AADYGK-LKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
           V +F +    +F +Y   P  + + GK +K+PR + D + L   L+ Y   + V  ++ Y
Sbjct: 36  VSIFTIAAFLMFLVYKNFPQLSEEEGKCIKIPRDMDDAKALGKVLSKYKDTFYVQVLVAY 95

Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
            +TY+F+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  
Sbjct: 96  FATYVFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYK 155

Query: 172 FWPEK 176
           +  EK
Sbjct: 156 YLTEK 160

Gallus gallus (taxid: 9031)

>sp|Q5BJD5|TM41B_HUMAN Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 55  VGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
           V +FL     +F +Y   P     +   +K+PR + D + L   L+ Y   + V  ++ Y
Sbjct: 58  VSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAY 117

Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
            +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  
Sbjct: 118 FATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYK 177

Query: 172 FWPEK 176
           +  EK
Sbjct: 178 YLTEK 182

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
224146389	262	predicted protein [Populus trichocarpa]	0.830	0.618	0.815	3e-73
30681121	287	SNARE associated Golgi protein [Arabidop	0.943	0.641	0.712	3e-73
7267653	194	putative protein [Arabidopsis thaliana]	0.943	0.948	0.718	5e-73
224135539	262	predicted protein [Populus trichocarpa]	0.830	0.618	0.803	6e-73
255571746	254	conserved hypothetical protein [Ricinus	0.912	0.700	0.725	5e-72
356576151	271	PREDICTED: uncharacterized membrane prot	0.882	0.634	0.733	9e-72
225460728	279	PREDICTED: uncharacterized membrane prot	0.902	0.630	0.702	8e-69
297813383	294	hypothetical protein ARALYDRAFT_489810 [	0.943	0.625	0.671	2e-68
297839041	272	hypothetical protein ARALYDRAFT_476324 [	0.846	0.606	0.720	2e-68
449463384	270	PREDICTED: uncharacterized membrane prot	0.876	0.633	0.717	2e-68

>gi|224146389|ref|XP_002325990.1| predicted protein [Populus trichocarpa] gi|222862865|gb|EEF00372.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 149/168 (88%), Gaps = 6/168 (3%)

Query: 17  RDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAAD 76
           RDEE     K KE D+SP+AKR K ERFPLT WE AA +GVF +F TGLFCIYLTMPAA+
Sbjct: 2   RDEE-----KAKE-DDSPSAKRAKFERFPLTRWELAAALGVFFVFSTGLFCIYLTMPAAE 55

Query: 77  YGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL 136
           YGKLKLPRTI+DLRLLKDNLATYA +YP  FI+GYCSTYIFMQTFMIPGTIFMSLLAGAL
Sbjct: 56  YGKLKLPRTISDLRLLKDNLATYANEYPAQFILGYCSTYIFMQTFMIPGTIFMSLLAGAL 115

Query: 137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
           FGV+RG+ LVVFNATAGASSCFFLSKLIGRPLV+W WPEKLRFFQAE+
Sbjct: 116 FGVVRGIFLVVFNATAGASSCFFLSKLIGRPLVNWLWPEKLRFFQAEI 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681121|ref|NP_192696.3| SNARE associated Golgi protein [Arabidopsis thaliana] gi|75153817|sp|Q8L586.1|Y4958_ARATH RecName: Full=Uncharacterized membrane protein At4g09580 gi|20465630|gb|AAM20146.1| unknown protein [Arabidopsis thaliana] gi|21281237|gb|AAM45090.1| unknown protein [Arabidopsis thaliana] gi|332657367|gb|AEE82767.1| SNARE associated Golgi protein [Arabidopsis thaliana]

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/188 (71%), Positives = 154/188 (81%), Gaps = 4/188 (2%)

Query: 1   MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEFAAFVG 56
           MAA RN+    G+R + +DEE        +G   D+SPT KR KSERFPL+ WEFA F  
Sbjct: 1   MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFT 60

Query: 57  VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
           VFL+F TGLFCIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+GYCSTYI
Sbjct: 61  VFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYI 120

Query: 117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
           FMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEK
Sbjct: 121 FMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEK 180

Query: 177 LRFFQAEV 184
           LRFFQAE+
Sbjct: 181 LRFFQAEI 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7267653|emb|CAB78081.1| putative protein [Arabidopsis thaliana] gi|7321077|emb|CAB82125.1| putative protein [Arabidopsis thaliana]

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 135/188 (71%), Positives = 154/188 (81%), Gaps = 4/188 (2%)

Query: 1   MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEFAAFVG 56
           MAA RN+    G+R + +DEE        +G   D+SPT KR KSERFPL+ WEFA F  
Sbjct: 1   MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFT 60

Query: 57  VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
           VFL+F TGLFCIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+GYCSTYI
Sbjct: 61  VFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYI 120

Query: 117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
           FMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEK
Sbjct: 121 FMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEK 180

Query: 177 LRFFQAEV 184
           LRFFQAEV
Sbjct: 181 LRFFQAEV 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135539|ref|XP_002327243.1| predicted protein [Populus trichocarpa] gi|222835613|gb|EEE74048.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 135/168 (80%), Positives = 149/168 (88%), Gaps = 6/168 (3%)

Query: 17  RDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAAD 76
           RDEE     K KE D+SP+AKR K ERFPLT WE AA +GVFL+F TGLFCIYLTMPAAD
Sbjct: 2   RDEE-----KAKE-DDSPSAKRSKFERFPLTRWELAAALGVFLVFSTGLFCIYLTMPAAD 55

Query: 77  YGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL 136
           YGKLKLPR+I+DLRLLKDNLATY  +YP  FI+GYCSTYIFMQTFMIPGTIFMSLLAGAL
Sbjct: 56  YGKLKLPRSISDLRLLKDNLATYVSEYPAQFILGYCSTYIFMQTFMIPGTIFMSLLAGAL 115

Query: 137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
           FG++RGL LVVFNATAGASSCFFLSKLIGRPLV+W WPEK+RFFQ+E+
Sbjct: 116 FGIVRGLFLVVFNATAGASSCFFLSKLIGRPLVNWLWPEKMRFFQSEI 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571746|ref|XP_002526816.1| conserved hypothetical protein [Ricinus communis] gi|223533820|gb|EEF35551.1| conserved hypothetical protein [Ricinus communis]

 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 154/186 (82%), Gaps = 8/186 (4%)

Query: 1   MAAARNVAA--GDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVF 58
           MAAARN+    G+     +DEE     K KE D+SP+AKR K ERFP T WEFAA +GVF
Sbjct: 1   MAAARNLTGEMGNNRSTMKDEE-----KAKE-DDSPSAKRLKFERFPFTRWEFAAAIGVF 54

Query: 59  LLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFM 118
            +F TGLFCIY+TMP + Y  LKLPRT++DLRLLKD+LATYA+DYP  FI+GYCSTYIFM
Sbjct: 55  FVFSTGLFCIYITMPISVYDNLKLPRTVSDLRLLKDHLATYAKDYPAQFILGYCSTYIFM 114

Query: 119 QTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLR 178
           QTFMIPGTIFMSLLAGALFGV+RGL LVVFNATAGASSCFFLSKLIGRP+V+W WP+KLR
Sbjct: 115 QTFMIPGTIFMSLLAGALFGVVRGLFLVVFNATAGASSCFFLSKLIGRPIVNWLWPDKLR 174

Query: 179 FFQAEV 184
            FQAE+
Sbjct: 175 VFQAEI 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576151|ref|XP_003556197.1| PREDICTED: uncharacterized membrane protein At4g09580-like [Glycine max]

 Score =  275 bits (702), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 135/184 (73%), Positives = 153/184 (83%), Gaps = 12/184 (6%)

Query: 1   MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLL 60
           MAA RNV A       RDEE+       E D+SP+AK+ KSERFPL  WEFA  V VFL+
Sbjct: 1   MAAPRNVTAT------RDEEKG------EDDDSPSAKKPKSERFPLNTWEFAVAVAVFLV 48

Query: 61  FVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQT 120
           F TGLFCIYLTMP+A Y  LKLPRT++DLRLLK++L+TYA ++P  FI+GYCSTYIFMQT
Sbjct: 49  FSTGLFCIYLTMPSAAYTNLKLPRTLSDLRLLKEHLSTYASNHPAQFILGYCSTYIFMQT 108

Query: 121 FMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFF 180
           FMIPGTIFMSLLAGALFGV+RG++LVVFNATAGASSCFFLSKLIGRPLVSW WPEKLRFF
Sbjct: 109 FMIPGTIFMSLLAGALFGVVRGILLVVFNATAGASSCFFLSKLIGRPLVSWLWPEKLRFF 168

Query: 181 QAEV 184
           QAE+
Sbjct: 169 QAEI 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460728|ref|XP_002271955.1| PREDICTED: uncharacterized membrane protein At4g09580 [Vitis vinifera] gi|296081147|emb|CBI18173.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (676), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 150/188 (79%), Gaps = 12/188 (6%)

Query: 1   MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFK----SERFPLTHWEFAAFVG 56
           MAA RN+   DG R+ RDEE +        D+SPT K+        RFPLT WEF   +G
Sbjct: 1   MAAPRNLG-NDGGRL-RDEENA------NEDDSPTTKKPAGVKIDGRFPLTRWEFTVALG 52

Query: 57  VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
           VF+ F  GLFCIYLTMPAA+YG+++LPRTI+DLR+LKD LATYA DYP  FI+GYCSTYI
Sbjct: 53  VFVFFSIGLFCIYLTMPAAEYGRIRLPRTISDLRMLKDQLATYANDYPAQFIMGYCSTYI 112

Query: 117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
           FMQTFMIPGTIFMSLLAGALFGV+RGL LVVFNATAGASSC+FLSKLIGRPLV+W WPEK
Sbjct: 113 FMQTFMIPGTIFMSLLAGALFGVVRGLFLVVFNATAGASSCYFLSKLIGRPLVNWLWPEK 172

Query: 177 LRFFQAEV 184
           LR FQAE+
Sbjct: 173 LRLFQAEI 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813383|ref|XP_002874575.1| hypothetical protein ARALYDRAFT_489810 [Arabidopsis lyrata subsp. lyrata] gi|297320412|gb|EFH50834.1| hypothetical protein ARALYDRAFT_489810 [Arabidopsis lyrata subsp. lyrata]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 131/195 (67%), Positives = 152/195 (77%), Gaps = 11/195 (5%)

Query: 1   MAAARNVAAGDGS--------RVFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHW 49
           MAA RN+    G         ++ +DEE +      +G   D+S T KR KSERFPL+ W
Sbjct: 1   MAAPRNLTGDGGGRQLDGGGRQLVKDEESAAASSAAKGLLNDDSSTGKRTKSERFPLSRW 60

Query: 50  EFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFII 109
           EFA F  VFL+F TGL CIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+
Sbjct: 61  EFAVFFTVFLVFTTGLLCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFIL 120

Query: 110 GYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLV 169
           GYCSTYIFMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV
Sbjct: 121 GYCSTYIFMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLV 180

Query: 170 SWFWPEKLRFFQAEV 184
           +W WPEKLRFFQAE+
Sbjct: 181 NWLWPEKLRFFQAEI 195

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839041|ref|XP_002887402.1| hypothetical protein ARALYDRAFT_476324 [Arabidopsis lyrata subsp. lyrata] gi|297333243|gb|EFH63661.1| hypothetical protein ARALYDRAFT_476324 [Arabidopsis lyrata subsp. lyrata]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/168 (72%), Positives = 146/168 (86%), Gaps = 3/168 (1%)

Query: 17  RDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAAD 76
           RDEE    G + + D+SP+ KR K +RFPL+ WE A  +GVFL+F +GL CIY+TMPAA+
Sbjct: 9   RDEEL---GVISDDDDSPSGKRSKLDRFPLSRWELAVSLGVFLVFSSGLCCIYMTMPAAE 65

Query: 77  YGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL 136
           +GKLKLPR+IADLRLLKDNLA YA +YP  F++GYC+TYIFMQTFMIPGTIFMSLLAGAL
Sbjct: 66  FGKLKLPRSIADLRLLKDNLANYANEYPAQFVLGYCATYIFMQTFMIPGTIFMSLLAGAL 125

Query: 137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
           FGV +G++LVVFNATAGA+SCFFLSKLIGRPL++W WP+KLRFFQAE+
Sbjct: 126 FGVFKGVVLVVFNATAGATSCFFLSKLIGRPLITWLWPDKLRFFQAEI 173

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463384|ref|XP_004149414.1| PREDICTED: uncharacterized membrane protein At4g09580-like [Cucumis sativus]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/184 (71%), Positives = 151/184 (82%), Gaps = 13/184 (7%)

Query: 1   MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLL 60
           MAA+RNV         RDEE     K+KE D+SPTAK+ K ERFPLT WE AA +G+FLL
Sbjct: 1   MAASRNVG-------MRDEE-----KLKE-DDSPTAKKPKFERFPLTKWELAAALGIFLL 47

Query: 61  FVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQT 120
             TGL C+YLTMP+A+Y  +KLPRT++DLR+LKD  A YA+D+P  FI+GYCSTYIFMQT
Sbjct: 48  CSTGLVCVYLTMPSAEYQSVKLPRTLSDLRVLKDLFANYAKDHPAQFILGYCSTYIFMQT 107

Query: 121 FMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFF 180
           FMIPGTIFMSLLAGALFGVIRGL+LVVFNATAGASSCFFLSKLIGRPLV W WPEKL+ F
Sbjct: 108 FMIPGTIFMSLLAGALFGVIRGLLLVVFNATAGASSCFFLSKLIGRPLVYWMWPEKLKLF 167

Query: 181 QAEV 184
           QAE+
Sbjct: 168 QAEI 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2136927	287	AT4G09580 "AT4G09580" [Arabido	0.943	0.641	0.654	1.1e-62
TAIR|locus:2129485	264	AT4G17790 "AT4G17790" [Arabido	0.723	0.534	0.581	4e-42
ZFIN|ZDB-GENE-050522-53	281	tmem41aa "transmembrane protei	0.543	0.377	0.349	2.9e-17
UNIPROTKB|Q08D99	264	TMEM41A "Transmembrane protein	0.538	0.397	0.380	6.7e-17
FB|FBgn0030850	320	stas "Stasimon" [Drosophila me	0.558	0.340	0.385	7.6e-17
UNIPROTKB|Q5ZIL6	269	TMEM41B "Transmembrane protein	0.558	0.405	0.392	1.8e-16
ZFIN|ZDB-GENE-061215-138	282	tmem41b "transmembrane protein	0.543	0.375	0.386	2.9e-16
MGI|MGI:1913914	264	Tmem41a "transmembrane protein	0.538	0.397	0.380	4.7e-16
UNIPROTKB|Q5BJD5	291	TMEM41B "Transmembrane protein	0.497	0.333	0.422	7.7e-16
MGI|MGI:1289225	291	Tmem41b "transmembrane protein	0.497	0.333	0.422	7.7e-16

TAIR|locus:2136927 AT4G09580 "AT4G09580" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 123/188 (65%), Positives = 142/188 (75%)

Query:     1 MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEXXXXXX 56
             MAA RN+    G+R + +DEE        +G   D+SPT KR KSERFPL+ WE      
Sbjct:     1 MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFT 60

Query:    57 XXXXXXXXXXCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
                       CIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y   FI+GYCSTYI
Sbjct:    61 VFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYI 120

Query:   117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
             FMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEK
Sbjct:   121 FMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEK 180

Query:   177 LRFFQAEV 184
             LRFFQAE+
Sbjct:   181 LRFFQAEI 188

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2129485 AT4G17790 "AT4G17790" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 82/141 (58%), Positives = 101/141 (71%)

Query:    44 FPLTHWEXXXXXXXXXXXXXXXXCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDY 103
             + L+ WE                C+YLTMP +DY  LKLPR + DL++L+DNL  Y  DY
Sbjct:    27 YSLSFWEVTAASGVVLGFILGLVCVYLTMPQSDYSFLKLPRNLEDLQILRDNLEIYTSDY 86

Query:   104 PVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKL 163
              V  ++GYC  Y+FMQTFMIPGT+FMSLLAGALFGV++G+ LVV  ATAGASSC+FLSKL
Sbjct:    87 TVQVLVGYCLVYVFMQTFMIPGTVFMSLLAGALFGVVKGMALVVSTATAGASSCYFLSKL 146

Query:   164 IGRPLVSWFWPEKLRFFQAEV 184
             IGRPL+   WP+KL FFQ +V
Sbjct:   147 IGRPLLFSLWPDKLVFFQDQV 167

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-050522-53 tmem41aa "transmembrane protein 41aa" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 37/106 (34%), Positives = 63/106 (59%)

Query:    79 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFG 138
             +LK P  + +L+ + + L  Y  ++    ++ +CS Y++ Q F IPG+ F+++LAGALFG
Sbjct:    58 RLKFPSDLDELKEMAELLQFYKTEHTGYVLLLFCSAYLYKQAFAIPGSSFLNILAGALFG 117

Query:   139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
                GL+L     T GA+ CF LS+  G+  +   +P+K+   Q +V
Sbjct:   118 TWFGLLLTCVLTTVGATLCFLLSQAFGKHHIVKLFPDKVAMLQKKV 163

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q08D99 TMEM41A "Transmembrane protein 41A" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 40/105 (38%), Positives = 67/105 (63%)

Query:    80 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGV 139
             L  P  +A+LR L + L  Y +++ V   + +CS Y++ Q+F IPG+ F+++LAGALFG 
Sbjct:    42 LWFPSDLAELRELSEVLREYRKEHQVYVFLLFCSAYLYKQSFAIPGSSFLNVLAGALFGP 101

Query:   140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
               GL+L     + GA+ C+ LS + G+ LV +++P+K+   Q +V
Sbjct:   102 WLGLLLCCVLTSVGATGCYLLSSVFGKQLVVFYFPDKVALLQKKV 146

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0030850 stas "Stasimon" [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 42/109 (38%), Positives = 64/109 (58%)

Query:    68 IYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTI 127
             I+  + A++   LK+PR I D ++L   L  Y   Y    + G    Y+F+QTF IPG++
Sbjct:   102 IFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYVFLQTFAIPGSL 161

Query:   128 FMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
             F+S+L G L+     L L+ F +  GA+ C+ LS L+GR L+  FWP+K
Sbjct:   162 FLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGRRLIRHFWPKK 210

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0032224 "positive regulation of synaptic transmission, cholinergic" evidence=IMP

UNIPROTKB|Q5ZIL6 TMEM41B "Transmembrane protein 41B" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 44/112 (39%), Positives = 68/112 (60%)

Query:    68 IYLTMP--AADYGK-LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIP 124
             +Y   P  + + GK +K+PR + D + L   L+ Y   + V  ++ Y +TY+F+QTF IP
Sbjct:    49 VYKNFPQLSEEEGKCIKIPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYVFLQTFAIP 108

Query:   125 GTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
             G+IF+S+L+G L+     L LV   +  GAS C+ LS L+GRP+V  +  EK
Sbjct:   109 GSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 160

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-061215-138 tmem41b "transmembrane protein 41B" [Danio rerio (taxid:7955)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 41/106 (38%), Positives = 65/106 (61%)

Query:    79 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFG 138
             K+K+P+ + D + L   L+ Y   Y    ++ Y +TYIF+QTF IPG+IF+S+L+G L+ 
Sbjct:    76 KIKIPKDMEDAKALGTVLSKYKDTYYTQVLLAYFATYIFLQTFAIPGSIFLSILSGYLYP 135

Query:   139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
                 L LV   +  GAS C+ LS L+GRP+V  +  E+ + +  +V
Sbjct:   136 FPLALFLVCLCSGLGASFCYMLSYLVGRPMVYKYLTERAQKWSQQV 181

GO:0003674 "molecular_function" evidence=ND

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1913914 Tmem41a "transmembrane protein 41a" [Mus musculus (taxid:10090)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 40/105 (38%), Positives = 64/105 (60%)

Query:    80 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGV 139
             L  P  +A+LR L + L  Y +++     + +CS Y++ Q F IPG+ F+++LAGALFG 
Sbjct:    42 LWFPSDLAELRELSEVLREYRKEHQAYVFLLFCSAYLYKQGFAIPGSSFLNVLAGALFGP 101

Query:   140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 184
               GL+L     + GA+ C+ LS L G+ LV  ++P+K+   Q +V
Sbjct:   102 WLGLLLCCVLTSVGATGCYLLSSLFGKQLVISYFPDKVALLQKKV 146

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5BJD5 TMEM41B "Transmembrane protein 41B" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 41/97 (42%), Positives = 61/97 (62%)

Query:    80 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGV 139
             +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+  
Sbjct:    86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPF 145

Query:   140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
                L LV   +  GAS C+ LS L+GRP+V  +  EK
Sbjct:   146 PLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 182

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1289225 Tmem41b "transmembrane protein 41B" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 41/97 (42%), Positives = 61/97 (62%)

Query:    80 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGV 139
             +K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+  
Sbjct:    86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPF 145

Query:   140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
                L LV   +  GAS C+ LS L+GRP+V  +  EK
Sbjct:   146 PLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L586	Y4958_ARATH	No assigned EC number	0.7127	0.9435	0.6411	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIX0222 hypothetical protein (262 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
COG0398	223	COG0398, COG0398, Uncharacterized conserved protei	2e-05

>gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown]

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 85  TIADLRLLKDNLATYAQDYPVPF-IIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGL 143
            +  L L  + L  + Q Y     ++ +   Y+     +IPG+I  +L  G LFG   G 
Sbjct: 27  GLLVLLLDPETLREWIQAYGALGPLVFFILLYLVATLPIIPGSIL-TLAGGLLFGPFLGF 85

Query: 144 ILVVFNATAGASSCFFLSKLIGRPLV 169
           +  +  ATAG++  F L++ +GR  V
Sbjct: 86  LYSLIGATAGSTLAFLLARYLGRDWV 111

Length = 223

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG3140	275	consensus Predicted membrane protein [Function unk	99.85
COG0398	223	Uncharacterized conserved protein [Function unknow	99.77
PF09335	123	SNARE_assoc: SNARE associated Golgi protein; Inter	98.99
PRK10847	219	hypothetical protein; Provisional	98.85
COG0586	208	DedA Uncharacterized membrane-associated protein [	98.4
COG1238	161	Predicted membrane protein [Function unknown]	97.08
PF07332	121	DUF1469: Protein of unknown function (DUF1469); In	91.4
PRK01844	72	hypothetical protein; Provisional	86.31
TIGR02359	160	thiW thiW protein. Levels of thiamine pyrophosphat	84.2
PRK11677	134	hypothetical protein; Provisional	83.96
PF07155	169	ECF-ribofla_trS: ECF-type riboflavin transporter,	83.4
PF09512	150	ThiW: Thiamine-precursor transporter protein (ThiW	83.19
PRK09609	312	hypothetical protein; Provisional	82.79
PRK00523	72	hypothetical protein; Provisional	82.19

>KOG3140 consensus Predicted membrane protein [Function unknown]

Probab=99.85  E-value=4.7e-21  Score=167.14  Aligned_cols=155  Identities=46%  Similarity=0.788  Sum_probs=140.5

Q ss_pred             hhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccccCccCCCHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q 029340           35 TAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAA-DYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCS  113 (195)
Q Consensus        35 ~~~~~~~~~~~l~~~~~~~~~~if~~~~~~L~~~~~~~P~~-e~~~l~lP~sle~L~~~~~~L~~~~~~~~~~~~l~fv~  113 (195)
                      .....++.+.....|+....+++|...+..+++.|..+|.. |..++++|+++++++.+.+.+++|.+++.....++|++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~l~if~~~~~~l~~i~~s~~~~~~~~~l~lp~~i~~~~~L~~vl~~y~~~~~a~~~~~~~~  102 (275)
T KOG3140|consen   23 AGQFLKKDELLLSLMSIAERLGIFLSFSLVLVYIYLSAPALSELGVLKLPRDILDLRGLGAVLRKYKATYFAAVLLGFIA  102 (275)
T ss_pred             hhhhcchhhhhhhhccHHHHHHHhhHHHHHHHHHHHcccCccccccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            33333334566666776777779999999999999999988 68899999999999999999999999999999999999


Q ss_pred             HHHhHhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHhhhhhHHHHHHHHHHhhcCc
Q 029340          114 TYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEVLLISL  189 (195)
Q Consensus       114 ~yi~~~~~~IPgsv~L~llaG~lFG~~~G~ll~~~g~tlGA~i~Fll~R~~gr~~v~~~~~~rl~~~~~~l~~~g~  189 (195)
                      .|++.|.+++||+.++++.+|++||+|.|++++++++++||++||++++++||+++.+++|+++..++..++++..
T Consensus       103 ~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~~~~~~  178 (275)
T KOG3140|consen  103 AYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDVELNRN  178 (275)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888776653

>COG0398 Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=7.6e-18  Score=143.21  Aligned_cols=100  Identities=28%  Similarity=0.489  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhCCchHHHH-HHHHHHhHhhcccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHhh
Q 029340           93 KDNLATYAQDYPVPFIIG-YCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW  171 (195)
Q Consensus        93 ~~~L~~~~~~~~~~~~l~-fv~~yi~~~~~~IPgsv~L~llaG~lFG~~~G~ll~~~g~tlGA~i~Fll~R~~gr~~v~~  171 (195)
                      .+.+++|+++++.+++++ |++.|+..+...+|+++ +++++|++|||++|++++++|+++||+++|+++|++|||++++
T Consensus        35 ~~~l~~~i~~~g~~~pl~~fil~~l~~~~~~iP~~i-l~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~~  113 (223)
T COG0398          35 PETLREWIQAYGALGPLVFFILLYLVATLPIIPGSI-LTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVLK  113 (223)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            466788899999999999 77777888888999998 5999999999999999999999999999999999999999999


Q ss_pred             hhh--HHHHHHHHHHhhcCceEEE
Q 029340          172 FWP--EKLRFFQAEVLLISLWLYF  193 (195)
Q Consensus       172 ~~~--~rl~~~~~~l~~~g~~~~f  193 (195)
                      +..  ++++++++.++|||+.+++
T Consensus       114 ~~~~~~~~~~~~~~~~~~g~~~i~  137 (223)
T COG0398         114 FVGGKEKVQRIDAGLERNGFWAIL  137 (223)
T ss_pred             HhcccHHHHHHHHHHHhCChHHHH
Confidence            886  5899999999999977654

>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins

Probab=98.99  E-value=9.8e-10  Score=82.98  Aligned_cols=69  Identities=25%  Similarity=0.519  Sum_probs=57.9

Q ss_pred             cchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHhhhh-h-HHHH---HHHHHHhhcCceEE
Q 029340          123 IPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFW-P-EKLR---FFQAEVLLISLWLY  192 (195)
Q Consensus       123 IPgsv~L~llaG~lFG~~~G~ll~~~g~tlGA~i~Fll~R~~gr~~v~~~~-~-~rl~---~~~~~l~~~g~~~~  192 (195)
                      +|++++ .+++|++||++.|++++++|+++|+.++|+++|+++++..+++. . ++.+   ++++.++|+|...+
T Consensus         1 iP~~~~-~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l   74 (123)
T PF09335_consen    1 IPGSIL-LIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKYGFWVL   74 (123)
T ss_pred             CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHH
Confidence            699996 79999999999999999999999999999999999966665544 3 3344   48999999986543

The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].

>PRK10847 hypothetical protein; Provisional

Probab=98.85  E-value=8.1e-08  Score=81.22  Aligned_cols=100  Identities=20%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             HHHHHHHHhCCchHHH-HHHHHHHhH---hhcccchHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHH
Q 029340           94 DNLATYAQDYPVPFII-GYCSTYIFM---QTFMIPGTIFMSLLAGALFG-------VIRGLILVVFNATAGASSCFFLSK  162 (195)
Q Consensus        94 ~~L~~~~~~~~~~~~l-~fv~~yi~~---~~~~IPgsv~L~llaG~lFG-------~~~G~ll~~~g~tlGA~i~Fll~R  162 (195)
                      +.+.++.++++.+++. +|+.++.=.   ...++|+.++ .+++|++.+       ++..++++++|+++|+.++|+++|
T Consensus        16 ~~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~-l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr   94 (219)
T PRK10847         16 VHLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSL-LFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGR   94 (219)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777766544 333333321   2355899885 677887754       567799999999999999999999


Q ss_pred             HhcHHHHhh----hh-hHHHHHHHHHHhhcCceEEEe
Q 029340          163 LIGRPLVSW----FW-PEKLRFFQAEVLLISLWLYFQ  194 (195)
Q Consensus       163 ~~gr~~v~~----~~-~~rl~~~~~~l~~~g~~~~f~  194 (195)
                      ++|++.+++    .. ++++++.++.++|+|...+|+
T Consensus        95 ~~G~~~l~~~~~~~~~~~~l~~~~~~~~r~G~~~v~i  131 (219)
T PRK10847         95 LFGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIIL  131 (219)
T ss_pred             HhCHHHhhccccccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            999999854    23 346899999999999887764

>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]

Probab=98.40  E-value=2.3e-06  Score=71.93  Aligned_cols=86  Identities=21%  Similarity=0.347  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhH---hhcccchHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHhhhhh-----
Q 029340          108 IIGYCSTYIFM---QTFMIPGTIFMSLLAGAL-----FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP-----  174 (195)
Q Consensus       108 ~l~fv~~yi~~---~~~~IPgsv~L~llaG~l-----FG~~~G~ll~~~g~tlGA~i~Fll~R~~gr~~v~~~~~-----  174 (195)
                      ..+|+.++.-.   ...++|+.++ .+++|++     ++++.-.+.+.+|+.+|+.+.|+++|++|++..+++..     
T Consensus        18 ~~~f~~~f~e~~l~~~~~lPge~i-L~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~   96 (208)
T COG0586          18 LGVFLILFLESGLLVGPPLPGEVL-LLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLK   96 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCCchHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCC
Confidence            34444444333   4567999996 6677765     78889999999999999999999999999999988765     


Q ss_pred             -HHHHHHHHHHhhcCceEEEe
Q 029340          175 -EKLRFFQAEVLLISLWLYFQ  194 (195)
Q Consensus       175 -~rl~~~~~~l~~~g~~~~f~  194 (195)
                       +++++-++.++|||.+.+|.
T Consensus        97 ~~~l~~a~~~f~r~G~~~vf~  117 (208)
T COG0586          97 RKKLDKAELLFERHGLFAIFL  117 (208)
T ss_pred             HHHHHHHHHHHHHcCchhhhh
Confidence             36899999999999876653

>COG1238 Predicted membrane protein [Function unknown]

Probab=97.08  E-value=0.004  Score=50.89  Aligned_cols=82  Identities=11%  Similarity=0.221  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhHhhcccchHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHhhhhh---HHHHHHHH
Q 029340          108 IIGYCSTYIFMQTFMIPGTIFMSLLAGAL--FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP---EKLRFFQA  182 (195)
Q Consensus       108 ~l~fv~~yi~~~~~~IPgsv~L~llaG~l--FG~~~G~ll~~~g~tlGA~i~Fll~R~~gr~~v~~~~~---~rl~~~~~  182 (195)
                      ..+|+..++-.+++++|..+++  ++-.+  +-+|.=.+++++|+++|+.+.|+++|+..+...++.++   ++.++.++
T Consensus        20 ~~Lf~vaF~eat~lP~~sE~~l--~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~~~~~~~   97 (161)
T COG1238          20 AGLFIVAFLEATLLPVPSEVLL--APMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEALEKLQE   97 (161)
T ss_pred             HHHHHHHHHHHHhcCCChHHHH--HHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHHHHHHHH
Confidence            6788888888999999987752  22222  78889999999999999999999999999877776553   45666665


Q ss_pred             -HHhhcCceE
Q 029340          183 -EVLLISLWL  191 (195)
Q Consensus       183 -~l~~~g~~~  191 (195)
                       ..+|.|.+.
T Consensus        98 ~~~~ryg~~~  107 (161)
T COG1238          98 KWYRRYGVWT  107 (161)
T ss_pred             HHHHHHHHHH
Confidence             566776543

>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like

Probab=91.40  E-value=3.8  Score=30.86  Aligned_cols=30  Identities=10%  Similarity=-0.124  Sum_probs=23.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcHH
Q 029340          138 GVIRGLILVVFNATAGASSCFFLSKLIGRP  167 (195)
Q Consensus       138 G~~~G~ll~~~g~tlGA~i~Fll~R~~gr~  167 (195)
                      ++|++++++.....+.+.++++.++.-.++
T Consensus        70 ~~~~a~liv~~~~l~la~i~~~~~~~~l~~   99 (121)
T PF07332_consen   70 PPWLAFLIVAGLYLLLALILLLIGRRRLRR   99 (121)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            778888888888888888888777665543

The function is not known.

>PRK01844 hypothetical protein; Provisional

Probab=86.31  E-value=2.9  Score=29.95  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHhhhh
Q 029340          139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFW  173 (195)
Q Consensus       139 ~~~G~ll~~~g~tlGA~i~Fll~R~~gr~~v~~~~  173 (195)
                      .|...++.+++..+|+.++|+++|+..++.+++--
T Consensus         3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~NP   37 (72)
T PRK01844          3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQKNP   37 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            45667788889999999999999999888887653

>TIGR02359 thiW thiW protein

Probab=84.20  E-value=1.8  Score=35.32  Aligned_cols=31  Identities=19%  Similarity=0.305  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 029340          126 TIFMSLLAGALFGVIRGLILVVFNATAGASS  156 (195)
Q Consensus       126 sv~L~llaG~lFG~~~G~ll~~~g~tlGA~i  156 (195)
                      +-+.++++|++||||+|.+...+++.++...
T Consensus        34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~   64 (160)
T TIGR02359        34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTL   64 (160)
T ss_pred             hHHHHHHHHHHHchHHHHHHHHHHHHHHHHh
Confidence            3346999999999999999888888776553

Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.

>PRK11677 hypothetical protein; Provisional

Probab=83.96  E-value=3  Score=33.15  Aligned_cols=26  Identities=12%  Similarity=0.040  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcHHH
Q 029340          143 LILVVFNATAGASSCFFLSKLIGRPL  168 (195)
Q Consensus       143 ~ll~~~g~tlGA~i~Fll~R~~gr~~  168 (195)
                      .++++++..+|.+++|+++|+.-+..
T Consensus         3 W~~a~i~livG~iiG~~~~R~~~~~~   28 (134)
T PRK11677          3 WEYALIGLVVGIIIGAVAMRFGNRKL   28 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchh
Confidence            36778899999999999999866553

>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins

Probab=83.40  E-value=4.1  Score=32.38  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 029340          125 GTIFMSLLAGALFGVIRGLILVVFNATAGASSC  157 (195)
Q Consensus       125 gsv~L~llaG~lFG~~~G~ll~~~g~tlGA~i~  157 (195)
                      +.+ ..+++|.+|||..|.+...+|..++..+.
T Consensus        38 ~~~-~i~l~~~l~Gp~~G~ivg~ig~~l~dll~   69 (169)
T PF07155_consen   38 GSI-PIILAGLLFGPKYGAIVGAIGDLLSDLLS   69 (169)
T ss_pred             hhH-HHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence            345 48999999999999999999998888743

The function of this family is unknown.; GO: 0016020 membrane

>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes

Probab=83.19  E-value=1.2  Score=36.05  Aligned_cols=47  Identities=28%  Similarity=0.441  Sum_probs=26.9

Q ss_pred             hcccchHHHHHHHHHhhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhcH
Q 029340          120 TFMIPGTIFMSLLAGALFGVIRGLILVVFNA-----TAGASSCFFLSKLIGR  166 (195)
Q Consensus       120 ~~~IPgsv~L~llaG~lFG~~~G~ll~~~g~-----tlGA~i~Fll~R~~gr  166 (195)
                      .+.+||+++=.+++|++|=-..-...+.+|-     .+|+.++|-+.+++..
T Consensus        66 ~lAfPGsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g  117 (150)
T PF09512_consen   66 LLAFPGSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMG  117 (150)
T ss_pred             HHHhccchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence            3456776666666666665544444444443     4556666666666554

The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.

>PRK09609 hypothetical protein; Provisional

Probab=82.79  E-value=7.1  Score=35.24  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=10.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHH
Q 029340          130 SLLAGALFGVIRGLILVVFNATA  152 (195)
Q Consensus       130 ~llaG~lFG~~~G~ll~~~g~tl  152 (195)
                      +.++|++|||+.|.+...+...+
T Consensus        47 viI~G~LFGPv~G~ivG~lsDLL   69 (312)
T PRK09609         47 IKITGFIFGPIVGFFTGLLSDLI   69 (312)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHH
Confidence            44445555555554444443333

>PRK00523 hypothetical protein; Provisional

Probab=82.19  E-value=5.5  Score=28.52  Aligned_cols=33  Identities=18%  Similarity=0.004  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcHHHHhhhh
Q 029340          141 RGLILVVFNATAGASSCFFLSKLIGRPLVSWFW  173 (195)
Q Consensus       141 ~G~ll~~~g~tlGA~i~Fll~R~~gr~~v~~~~  173 (195)
                      ...++.+++..+|+.++|+++|+..++.++..-
T Consensus         6 l~I~l~i~~li~G~~~Gffiark~~~k~l~~NP   38 (72)
T PRK00523          6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIRENP   38 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            345566777899999999999999988887544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00