Citrus Sinensis ID: 029343

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIGTKFFTFYSRLKKGLKKVQSSFG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHcccccHHHHHHHHHHEEEEEEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHHEEEccccccHHHHHHcccccccccccccccEEEEEEEEccEEEHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHEHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccEEEEEcHEEEccccccEccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtgtfgalsLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQhvlkptinpplysfhrslltskaplsvqthinslfstprghylqnraptftrrlfipsvsgiwdaltggnnnsREAVVAIRRGMLLFRQgdvvgsvaefdkaieldprqkisgkgayrFTISIGTKFFTFYSRLKKGLKKVQSSFG
Flexible Loop (DISEMBL)
mtgtfgalslsqTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINslfstprghYLQNRAPTFTRRLFIPSVSGIWDaltggnnnsREAVVAIRRGMLLFRQGDVVGSVAEFdkaieldprqkisgkgayrFTISIGTKFFTFYSRLKKGLKKVQSSFG
Low Complexity Region (SEG)
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIGTKFFTFYSRLKKGLKKVQSSFG
Disordered region (IsUnstruct)
******************TQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIGTKFFTFYSRLKK**********
Disordered Region (DISOPRED)
***TFGALSLSQT*****TQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINP**************PLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ*ISGKGAYRFTISIGTKFFTFYSRLKKGLK*V*****
Disordered Region (DISEMBL)
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIGTKFFTFYSRLKKG*********
Disordered Region (DISPRO)
****FGALSLS*TYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIGTKFFTFYSRLKKGLKKVQS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIGTKFFTFYSRLKKGLKKVQSSFG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224125100	271	predicted protein [Populus trichocarpa]	0.592	0.424	0.663	3e-31
255542812	221	conserved hypothetical protein [Ricinus	0.396	0.348	0.734	6e-26
356533558	255	PREDICTED: uncharacterized protein LOC10	0.489	0.372	0.565	1e-24
449454057	267	PREDICTED: uncharacterized protein LOC10	0.314	0.228	0.838	6e-23
124359146	263	TPR repeat [Medicago truncatula]	0.319	0.235	0.75	7e-21
357441797	265	hypothetical protein MTR_1g083600 [Medic	0.319	0.233	0.75	9e-21
217073934	265	unknown [Medicago truncatula]	0.319	0.233	0.734	4e-20
297829092	257	binding protein [Arabidopsis lyrata subs	0.525	0.396	0.517	1e-19
225450751	270	PREDICTED: uncharacterized protein LOC10	0.314	0.225	0.758	1e-19
30679555	257	tetratricopeptide repeat-containing prot	0.319	0.241	0.730	3e-19

>gi|224125100|ref|XP_002319500.1| predicted protein [Populus trichocarpa] gi|222857876|gb|EEE95423.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 87/119 (73%), Gaps = 4/119 (3%)

Query: 44  MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINS-LFST---PRGHYLQNRAPTFT 99
           MALT +       P   S H+  LT+  P S +TH NS  FST    R H LQN  PTFT
Sbjct: 1   MALTHNFNHIFPTPSSSSKHKHSLTTTLPFSPKTHTNSHFFSTNIPSRIHNLQNPLPTFT 60

Query: 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158
           RRLF+PSVSGIWDALTGGNNN REAV+AIRRGMLLFRQGDV+GS+ EFDKAIELD RQK
Sbjct: 61  RRLFLPSVSGIWDALTGGNNNPREAVMAIRRGMLLFRQGDVLGSLVEFDKAIELDTRQK 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542812|ref|XP_002512469.1| conserved hypothetical protein [Ricinus communis] gi|223548430|gb|EEF49921.1| conserved hypothetical protein [Ricinus communis]

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 68/79 (86%), Gaps = 2/79 (2%)

Query: 82  LFST--PRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD 139
           +FST   R H LQ+  P  +RRLF+P+VSGIWDALTG NNN+REAV+AIRRGMLLFRQGD
Sbjct: 1   MFSTIPSRIHNLQHPLPILSRRLFLPAVSGIWDALTGANNNAREAVLAIRRGMLLFRQGD 60

Query: 140 VVGSVAEFDKAIELDPRQK 158
           V+GS+ EFDKA+ELDPRQK
Sbjct: 61  VLGSLVEFDKAMELDPRQK 79

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533558|ref|XP_003535330.1| PREDICTED: uncharacterized protein LOC100809261 [Glycine max]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 79/122 (64%), Gaps = 27/122 (22%)

Query: 45  ALTQHVLKP---TINPPLYSFHRS----LLTSKAPLSVQTHINSLFSTPRGHYLQNRAPT 97
           A   H LKP    ++P L+  HRS     L+ KAP S    +                  
Sbjct: 3   AFISHNLKPGGIMVSPSLH--HRSSFPLQLSLKAPFSASHPL-----------------V 43

Query: 98  FTRRLFIPSVSGIWDALTGGNNN-SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
            TRRLF+PSVSGIWDALTGGNNN +REAV+AIRRGMLLFRQGDV GS+AEFDKAI+LDPR
Sbjct: 44  LTRRLFLPSVSGIWDALTGGNNNNAREAVLAIRRGMLLFRQGDVSGSLAEFDKAIQLDPR 103

Query: 157 QK 158
           QK
Sbjct: 104 QK 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454057|ref|XP_004144772.1| PREDICTED: uncharacterized protein LOC101209381 [Cucumis sativus]

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 58/62 (93%), Gaps = 1/62 (1%)

Query: 97  TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
           + +RRLF+PSVSGIWDALTGGNN  R+AV AIRRGMLLFRQGDV+GS+AEFDKAIELDPR
Sbjct: 55  SLSRRLFVPSVSGIWDALTGGNN-PRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPR 113

Query: 157 QK 158
           QK
Sbjct: 114 QK 115

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359146|gb|ABD28339.2| TPR repeat [Medicago truncatula]

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 57/64 (89%), Gaps = 2/64 (3%)

Query: 97  TFTRRLFIPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154
             +RRLF+PSVSGIWDA+TGG  NNN+ EA++AIRRGM LFRQG+V+GSV EFDKAI+LD
Sbjct: 50  NLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQLD 109

Query: 155 PRQK 158
           PRQK
Sbjct: 110 PRQK 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441797|ref|XP_003591176.1| hypothetical protein MTR_1g083600 [Medicago truncatula] gi|355480224|gb|AES61427.1| hypothetical protein MTR_1g083600 [Medicago truncatula] gi|388510044|gb|AFK43088.1| unknown [Medicago truncatula]

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 57/64 (89%), Gaps = 2/64 (3%)

Query: 97  TFTRRLFIPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154
             +RRLF+PSVSGIWDA+TGG  NNN+ EA++AIRRGM LFRQG+V+GSV EFDKAI+LD
Sbjct: 50  NLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQLD 109

Query: 155 PRQK 158
           PRQK
Sbjct: 110 PRQK 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073934|gb|ACJ85327.1| unknown [Medicago truncatula]

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 2/64 (3%)

Query: 97  TFTRRLFIPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154
             +RRLF+PSVSGIWDA+TGG  NNN+ EA++A RRGM LFRQG+V+GSV EFDKAI+LD
Sbjct: 50  NLSRRLFLPSVSGIWDAITGGSGNNNTNEALLATRRGMSLFRQGEVLGSVVEFDKAIQLD 109

Query: 155 PRQK 158
           PRQK
Sbjct: 110 PRQK 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829092|ref|XP_002882428.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297328268|gb|EFH58687.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 75/116 (64%), Gaps = 14/116 (12%)

Query: 44  MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLF 103
           M+LTQ ++ P I P      R++      +S    +N  FS    H L       +RRLF
Sbjct: 1   MSLTQ-IVNPIIYP-----SRTIPRRFTAISPFQTLNPQFSRHPPHAL-------SRRLF 47

Query: 104 IPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158
           +PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGDV GSVAEFD+AI LDPRQK
Sbjct: 48  LPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAIVLDPRQK 103

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450751|ref|XP_002279298.1| PREDICTED: uncharacterized protein LOC100240883 [Vitis vinifera] gi|296089711|emb|CBI39530.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 97  TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
           + +RRLF+PSVSGIW+ALTGG++  RE+ +AIRRGMLLFRQGDV GS+ EFDKAIELDPR
Sbjct: 58  SLSRRLFLPSVSGIWNALTGGDSY-RESAMAIRRGMLLFRQGDVSGSLVEFDKAIELDPR 116

Query: 157 QK 158
           QK
Sbjct: 117 QK 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679555|ref|NP_683531.2| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|27311659|gb|AAO00795.1| Unknown protein [Arabidopsis thaliana] gi|30023732|gb|AAP13399.1| At3g05625 [Arabidopsis thaliana] gi|332640747|gb|AEE74268.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 54/63 (85%), Gaps = 1/63 (1%)

Query: 97  TFTRRLFIPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
             +RRLF+PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGDV GSVAEFD+AI LDP
Sbjct: 41  ALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAIILDP 100

Query: 156 RQK 158
           RQK
Sbjct: 101 RQK 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:504955885	257	AT3G05625 "AT3G05625" [Arabido	0.402	0.303	0.620	2.1e-20

TAIR|locus:504955885 AT3G05625 "AT3G05625" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 49/79 (62%), Positives = 60/79 (75%)

Query:    81 SLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGD 139
             S F T    + ++     +RRLF+PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGD
Sbjct:    25 SPFKTLSPQFSRHPPHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGD 84

Query:   140 VVGSVAEFDKAIELDPRQK 158
             V GSVAEFD+AI LDPRQK
Sbjct:    85 VAGSVAEFDRAIILDPRQK 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       194   0.00076  111 3  11 22  0.40    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  147 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.10u 0.16s 17.26t   Elapsed:  00:00:01
  Total cpu time:  17.10u 0.16s 17.26t   Elapsed:  00:00:01
  Start:  Fri May 10 16:21:53 2013   End:  Fri May 10 16:21:54 2013

GO:0008150 "biological_process" evidence=ND

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130116 hypothetical protein (271 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.003

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
             A      G  LF+ GD   ++  ++KA+ELDP
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDP 34

Length = 69

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 33.6 bits (78), Expect = 0.003
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
           A      G+  ++ GD   ++  ++KA+ELDP 
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.77
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.58
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.21
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.17
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.16
PF13371	73	TPR_9: Tetratricopeptide repeat	97.05
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.78
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.62
KOG0547	606	consensus Translocase of outer mitochondrial membr	96.08
PRK15359	144	type III secretion system chaperone protein SscB;	95.87
PRK11189	296	lipoprotein NlpI; Provisional	95.66
PRK15359	144	type III secretion system chaperone protein SscB;	95.04
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.82
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	93.89
PF13428	44	TPR_14: Tetratricopeptide repeat	93.72
PRK11189	296	lipoprotein NlpI; Provisional	93.64
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.25
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.21
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	93.1
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	92.95
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	92.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	92.12
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	91.8
PRK10370	198	formate-dependent nitrite reductase complex subuni	91.58
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.46
KOG0547	606	consensus Translocase of outer mitochondrial membr	91.31
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.27
TIGR02552	135	LcrH_SycD type III secretion low calcium response	90.95
PRK12370	553	invasion protein regulator; Provisional	90.86
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	90.24
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	89.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	89.78
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	88.83
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	88.09
PRK10370	198	formate-dependent nitrite reductase complex subuni	88.08
PRK12370	553	invasion protein regulator; Provisional	87.91
PRK11906	458	transcriptional regulator; Provisional	87.5
KOG0553	304	consensus TPR repeat-containing protein [General f	86.04
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	85.77
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	85.42
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	85.19
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	85.07
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	84.58
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	83.93
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	82.07
PRK11906	458	transcriptional regulator; Provisional	81.62
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	80.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	80.22

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.77  E-value=2.8e-05  Score=44.72  Aligned_cols=33  Identities=30%  Similarity=0.477  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |.++.++|+.++.+|+.+.+++.|.+|+++||.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            578899999999999999999999999999996

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.58  E-value=6.6e-05  Score=47.72  Aligned_cols=36  Identities=28%  Similarity=0.561  Sum_probs=24.8

Q ss_pred             CchhhHHHHHHHHHhhhhc-cccccHHHHHHHhhcCc
Q 029343          120 NSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDP  155 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqg-DVeGSIaDFDkAIeLDP  155 (194)
                      +|.++.++..+|..++.+| +.++++++|++|+++||
T Consensus        33 ~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   33 DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4566667777777777776 57777777777777766

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.21  E-value=0.00032  Score=44.52  Aligned_cols=36  Identities=39%  Similarity=0.590  Sum_probs=33.6

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      +|..+...|+.++.+||.+.+++.|++|+++||..-
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~   37 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA   37 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            688899999999999999999999999999999753

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.17  E-value=0.00048  Score=38.78  Aligned_cols=33  Identities=30%  Similarity=0.471  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |.++...|..++.+|+.+.+++.|++|++++|.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            456778899999999999999999999999995

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.16  E-value=0.00041  Score=43.92  Aligned_cols=47  Identities=21%  Similarity=0.401  Sum_probs=41.1

Q ss_pred             ccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       108 sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ...++.++  ...|.++.+....|..++++|+.+++++.|++|++++|.
T Consensus        17 ~~~~~~~l--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen   17 IAAFEQAL--KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHH--CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            34566677  677999999999999999999999999999999999995

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.05  E-value=0.00055  Score=43.74  Aligned_cols=45  Identities=18%  Similarity=0.407  Sum_probs=39.7

Q ss_pred             ccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       110 iWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .++..+  .-+|.++.++..+|+.++.+|+.++++++|+++++++|+
T Consensus        17 ~~~~~l--~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen   17 VLERAL--ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHHHH--HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            445555  567889999999999999999999999999999999994

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.78  E-value=0.0012  Score=37.62  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=30.2

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +.++...|+.+..+||.+.|++.|.+|++++|+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            467889999999999999999999999999985

...

>smart00028 TPR Tetratricopeptide repeats

Probab=96.62  E-value=0.0025  Score=31.65  Aligned_cols=33  Identities=30%  Similarity=0.468  Sum_probs=30.1

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +.++.+.|+.++.+++.+.++..|+++++++|.
T Consensus         1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             ChHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            356788999999999999999999999999985

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.08  E-value=0.003  Score=60.74  Aligned_cols=40  Identities=30%  Similarity=0.469  Sum_probs=36.4

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.||..|-.||=.+|..+++++.++|||+|++|||..
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~  427 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN  427 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence            4578999999999999999999999999999999999973

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.87  E-value=0.0081  Score=44.80  Aligned_cols=40  Identities=15%  Similarity=0.130  Sum_probs=35.6

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.++.++.+.|..++++|+.+++++.|++|++++|..
T Consensus        86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359         86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD  125 (144)
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4568899999999999999999999999999999999875

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.66  E-value=0.011  Score=48.57  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=30.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++..+|..+..+||.++++++||+|+++||..
T Consensus        92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~  131 (296)
T PRK11189         92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY  131 (296)
T ss_pred             HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4567777777777888888888888888888888877764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.04  E-value=0.02  Score=42.73  Aligned_cols=46  Identities=11%  Similarity=0.035  Sum_probs=40.2

Q ss_pred             ccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       110 iWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .++..+  ..+|.++.++...|+.+.++|+.+++++.|++|+++||.-
T Consensus        46 ~~~~al--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         46 DFSWLV--MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHH--HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            344455  6779999999999999999999999999999999999963

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.82  E-value=0.029  Score=52.41  Aligned_cols=41  Identities=32%  Similarity=0.596  Sum_probs=38.4

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..+|++|.++...|+.+|.+|+++++|+.|++|+++||..-
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a  109 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD  109 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence            46799999999999999999999999999999999999954

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=93.89  E-value=0.057  Score=46.27  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=36.0

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.++.++.++|..++.+|+.+++++.|++|+++||.-
T Consensus        64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  103 (356)
T PLN03088         64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD  103 (356)
T ss_pred             HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            4567889999999999999999999999999999999874

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.72  E-value=0.078  Score=32.59  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      |.++...|-.+.++|+.+++++.|.++++++|.-
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4567778899999999999999999999999974

>PRK11189 lipoprotein NlpI; Provisional

Probab=93.64  E-value=0.07  Score=43.88  Aligned_cols=40  Identities=15%  Similarity=0.192  Sum_probs=37.1

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.++.++..+|..++.+|+.++++++|++|++++|.-
T Consensus       126 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        126 ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4578899999999999999999999999999999999975

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.25  E-value=0.099  Score=28.86  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=28.3

Q ss_pred             HHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       126 aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ++.+.|+.++++||.+.+++.|+++++..|.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5678899999999999999999999998884

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.21  E-value=0.066  Score=49.49  Aligned_cols=51  Identities=22%  Similarity=0.328  Sum_probs=43.8

Q ss_pred             cccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (194)
Q Consensus       107 ~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp  159 (194)
                      +-..+|.+.  .-.++|..|+-|||+.+-..||.+.++.||-+|++++|.=|+
T Consensus       276 Ai~~c~kvL--e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka  326 (397)
T KOG0543|consen  276 AIESCNKVL--ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA  326 (397)
T ss_pred             HHHHHHHHH--hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence            344566666  567999999999999999999999999999999999997653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=93.10  E-value=0.09  Score=45.06  Aligned_cols=40  Identities=30%  Similarity=0.413  Sum_probs=37.0

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.++.++..+|..+..+|+.+++++++++|+++||..
T Consensus        30 ~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~   69 (356)
T PLN03088         30 DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL   69 (356)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            4678899999999999999999999999999999999953

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=92.95  E-value=0.076  Score=33.48  Aligned_cols=28  Identities=32%  Similarity=0.586  Sum_probs=26.3

Q ss_pred             HHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          129 RRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       129 RRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ..|+.++.+||.+++++.|+++++.+|.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~   29 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD   29 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            4689999999999999999999999986

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=92.34  E-value=0.18  Score=35.25  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=17.8

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ..+.++...|..++.+|+.+.+++.|+++++.+|.
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~   63 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD   63 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            33444555555555555555555555555555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=92.12  E-value=0.11  Score=36.03  Aligned_cols=37  Identities=11%  Similarity=0.080  Sum_probs=20.3

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +|.++.++.+.|-.++.+|+.+.+++.|+++++++|.
T Consensus        47 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552        47 DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4455555555555555555555555555555555544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=91.80  E-value=0.16  Score=45.24  Aligned_cols=40  Identities=28%  Similarity=0.472  Sum_probs=34.1

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++..+|..++.+||.++++++|++|++++|..
T Consensus       393 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence            4567888888899999999999999999999999998853

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=91.58  E-value=0.19  Score=39.85  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=34.1

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      -.|.|+.++-..|+.+|.+||.+++|+.++++++++|-
T Consensus       139 ~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        139 LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            36888888888899999999999999999999999885

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.46  E-value=0.27  Score=28.27  Aligned_cols=35  Identities=26%  Similarity=0.512  Sum_probs=24.0

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      +.++..+...|..++.+|+.+.+++.|+++++++|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            44445666667777777777777777777777666

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.31  E-value=0.15  Score=49.48  Aligned_cols=42  Identities=19%  Similarity=0.214  Sum_probs=35.4

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp  159 (194)
                      +.-+.++++||+|+..+-.++|-+.++.+||+|+.|||.-.+
T Consensus       354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d  395 (606)
T KOG0547|consen  354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD  395 (606)
T ss_pred             hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc
Confidence            455677888999999999999999999999999999987543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.27  E-value=0.31  Score=27.97  Aligned_cols=41  Identities=20%  Similarity=0.373  Sum_probs=34.6

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ...+.++......|..+..+++.+.+++.|+++++.+|...
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189          28 ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            34456667788899999999999999999999999988754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=90.95  E-value=0.22  Score=34.48  Aligned_cols=48  Identities=13%  Similarity=0.138  Sum_probs=40.4

Q ss_pred             ccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       108 sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ...|+..+  ..+|.++..+...|..+..+||.+.+++.|++|+++||.-
T Consensus        71 ~~~~~~~~--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        71 IDAYALAA--ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN  118 (135)
T ss_pred             HHHHHHHH--hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            33455555  4568899999999999999999999999999999999843

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=90.86  E-value=0.24  Score=44.38  Aligned_cols=40  Identities=20%  Similarity=0.321  Sum_probs=36.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|+++.++...|+.++.+|+.+++++.|++|+++||..
T Consensus       366 ~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        366 LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            4678888899999999999999999999999999999984

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=90.24  E-value=0.33  Score=31.95  Aligned_cols=39  Identities=13%  Similarity=0.210  Sum_probs=27.0

Q ss_pred             Cchh---hHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          120 NSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       120 ~p~e---a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .|.+   +.++...|-.+++.|+.+++++.|+++++++|...
T Consensus        32 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795        32 YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence            4555   34566677777777777777777777777777543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=89.80  E-value=0.36  Score=43.14  Aligned_cols=38  Identities=34%  Similarity=0.557  Sum_probs=32.6

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+.++.++..+|..++.+||.++++++|++|+++||+.
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~  364 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV  364 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            57777888888999999999999999999999998864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=89.78  E-value=0.43  Score=33.34  Aligned_cols=38  Identities=13%  Similarity=0.349  Sum_probs=28.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|..++.+||.+.+++.|++|++++|..
T Consensus        61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~   98 (234)
T TIGR02521        61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN   98 (234)
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            45666777777888888888888888888888877653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=88.83  E-value=0.38  Score=30.15  Aligned_cols=39  Identities=13%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+|.++.+.+.-+-.++++|+.+.+.+-++++++.+|.-
T Consensus        20 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen   20 RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            458889999999999999999999999999999999973

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=88.09  E-value=0.51  Score=35.36  Aligned_cols=38  Identities=26%  Similarity=0.513  Sum_probs=22.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      +.++.++.++.+.|..+.+.||.+++++.|.+|++++|
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~   66 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE   66 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            34455555566666666666666666666666665544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=88.08  E-value=0.57  Score=37.09  Aligned_cols=38  Identities=13%  Similarity=0.183  Sum_probs=24.4

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+|.|+.++..-|..+...|+.+.+++.|++|++++|+
T Consensus        68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~  105 (198)
T PRK10370         68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE  105 (198)
T ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            45666666666666666666666666666666666664

>PRK12370 invasion protein regulator; Provisional

Probab=87.91  E-value=0.52  Score=42.26  Aligned_cols=40  Identities=13%  Similarity=0.074  Sum_probs=36.8

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|..+..+|+.+++++.|++|++++|.-
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~  371 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS  371 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            4578899999999999999999999999999999999974

>PRK11906 transcriptional regulator; Provisional

Probab=87.50  E-value=0.52  Score=44.30  Aligned_cols=40  Identities=20%  Similarity=0.404  Sum_probs=28.0

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      =+|+.|.++.-+|+.+|-.|+.++.++.+|+|++|+|+-.
T Consensus       367 L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        367 HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            3566677777777777777777777777777777777643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.04  E-value=0.55  Score=42.34  Aligned_cols=41  Identities=22%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .-.|.-..+|.|-|+.+..+|+.++.|+.|-+|+++||.-.
T Consensus       143 ~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  143 SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            34455556667778888888888888888888888888765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=85.77  E-value=0.75  Score=45.79  Aligned_cols=40  Identities=10%  Similarity=-0.006  Sum_probs=36.1

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.+....|+.++.+||.+++++.|++|++++|+.
T Consensus       671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            4568888999999999999999999999999999999965

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=85.42  E-value=1.2  Score=29.33  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=28.2

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+.+....|..+..+|+.+.++..++++++..|.-
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            46677778888888888888888888888888763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=85.19  E-value=1  Score=34.23  Aligned_cols=48  Identities=19%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             cccccccCCCCCchhh---HHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          109 GIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       109 giWd~~~GG~n~p~ea---~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..++.++  ..+|.++   .++...|..++.+|+.+.+++.|+++++.+|.-.
T Consensus        54 ~~~~~~~--~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        54 KYFEALE--SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             HHHHHHH--HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            3445555  3444444   5778899999999999999999999999999644

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=85.07  E-value=0.81  Score=36.24  Aligned_cols=38  Identities=24%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      -+.++..+..+|+.+.++|+.+.+++.+.+|++++|.-
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~  179 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD  179 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            35788999999999999999999999999999999973

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=84.58  E-value=0.9  Score=37.06  Aligned_cols=37  Identities=3%  Similarity=-0.001  Sum_probs=33.2

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcC
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD  154 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLD  154 (194)
                      .-+++||..+--.|-.+|..||+++|.+.|+.||+.-
T Consensus        97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            4568999999999999999999999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=83.93  E-value=1.2  Score=32.92  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=17.5

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcC
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD  154 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLD  154 (194)
                      .+..+...|+..+.+|+.+++++.|++|+++.
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~   65 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE   65 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence            34444555555555555555555555555553

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=82.07  E-value=1.2  Score=39.51  Aligned_cols=36  Identities=25%  Similarity=0.392  Sum_probs=31.9

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+.+.|..||.++++||-+-.-+.+|+|++.||..
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~   68 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY   68 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            345677888999999999999999999999999963

>PRK11906 transcriptional regulator; Provisional

Probab=81.62  E-value=1.6  Score=41.22  Aligned_cols=39  Identities=13%  Similarity=0.056  Sum_probs=33.1

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .+.||.+....|....-.++.+.+++.||+|.+|+|..-
T Consensus       334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A  372 (458)
T PRK11906        334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA  372 (458)
T ss_pred             CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH
Confidence            456666666778888999999999999999999999863

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=80.73  E-value=1.8  Score=36.60  Aligned_cols=38  Identities=26%  Similarity=0.451  Sum_probs=27.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +|.++.++...|..++.+||.+.+++.|.+|++++|.-
T Consensus       189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~  226 (899)
T TIGR02917       189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN  226 (899)
T ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            45666667777777777777777777777777777753

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=80.22  E-value=2  Score=32.71  Aligned_cols=36  Identities=14%  Similarity=0.077  Sum_probs=33.2

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ...+......|+.++.+|+.+..++.|+++++.+|.
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~   65 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF   65 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            567788999999999999999999999999999985

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-04

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
            N  R+       G+   ++GD+  +V  F+ A++ DP
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP 95

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
            +++ EA    +   L ++ GD   S++E  + ++LD 
Sbjct: 184 KSDNTEAFY--KISTLYYQLGDHELSLSEVRECLKLDQ 219

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
            N++ EA    +   L ++ GD   S++E  + ++LD 
Sbjct: 207 KNDNTEAFY--KISTLYYQLGDHELSLSEVRECLKLDQ 242

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
            N  ++   A   G+   ++GD+  ++   + AI  DP
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.01
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.98
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.92
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.87
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.8
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.76
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.66
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.62
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.52
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.44
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.4
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.39
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.34
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.15
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.02
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.91
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.91
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	95.88
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.83
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.81
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.59
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	95.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.52
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.51
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.43
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.35
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	95.31
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.31
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.27
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	95.26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.18
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.18
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.15
3k9i_A	117	BH0479 protein; putative protein binding protein,	95.15
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.13
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	95.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	95.08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	94.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	94.86
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	94.83
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	94.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	94.78
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	94.73
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	94.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.65
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	94.55
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.5
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	94.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	94.4
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	94.37
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	94.34
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	94.29
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	94.27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	94.26
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.1
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.1
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	94.04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	94.0
2kat_A	115	Uncharacterized protein; NESG, structure, structur	93.86
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	93.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	93.78
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	93.72
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	93.69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	93.6
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	93.6
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	93.54
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	93.38
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	93.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.33
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.22
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	93.2
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	93.17
3u4t_A	272	TPR repeat-containing protein; structural genomics	93.16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	93.12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	93.07
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	92.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	92.69
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	92.6
3u4t_A	272	TPR repeat-containing protein; structural genomics	92.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.38
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	92.27
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	92.18
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	92.02
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	92.01
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	92.0
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	91.93
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	91.88
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	91.85
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	91.72
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	91.58
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	91.51
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	91.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	91.27
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	91.24
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	91.11
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	91.1
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	91.08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	91.08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	90.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	90.87
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	90.83
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	90.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	90.64
2gw1_A	514	Mitochondrial precursor proteins import receptor;	90.55
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	90.54
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	90.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	90.44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	90.4
2gw1_A	514	Mitochondrial precursor proteins import receptor;	89.86
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	89.72
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	89.69
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	89.68
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	89.68
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	89.65
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	89.44
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	89.42
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	89.38
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	89.06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	88.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	88.68
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	87.8
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	87.38
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	87.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	86.72
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	86.25
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	86.13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	85.91
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	85.49
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	84.99
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	84.38
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	83.38
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	82.59
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	82.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	81.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	80.88

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.43  E-value=8.3e-05  Score=50.63  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=22.3

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +|..+.++..+|..+|++||.+++|+.|++|+++||.
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~   45 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE   45 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3555555556666666666666666666666666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.06  E-value=0.00041  Score=47.14  Aligned_cols=39  Identities=18%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      -+|.++.++.++|..++.+|+.++++++|++|+++||.-
T Consensus        76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence            356677777788888888888888888888888887754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.03  E-value=0.00047  Score=46.73  Aligned_cols=40  Identities=8%  Similarity=0.071  Sum_probs=36.8

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      -+|.++.++.++|..++.+|+.++++++|.+|+++||.-.
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            4688999999999999999999999999999999999754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.01  E-value=0.00043  Score=44.78  Aligned_cols=39  Identities=13%  Similarity=0.274  Sum_probs=32.8

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+|.++.++...|+.++.+|+.+++++.|++|+++||..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   40 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY   40 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            358889999999999999999999999999999999874

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.00066  Score=41.77  Aligned_cols=39  Identities=10%  Similarity=0.231  Sum_probs=36.0

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++...|+.++.+|+.+++++.|++|++++|..
T Consensus        33 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           33 AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            457789999999999999999999999999999999985

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.00069  Score=43.70  Aligned_cols=39  Identities=26%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+|.++.++..+|..++.+|+.++++++|++|+++||..
T Consensus        33 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   71 (126)
T 3upv_A           33 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF   71 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            346777888888888888888888888888888888863

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.92  E-value=0.00058  Score=46.21  Aligned_cols=41  Identities=17%  Similarity=0.096  Sum_probs=36.0

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..+|.++.++...|..++++|+.+++++.|++|+++||.--
T Consensus       135 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          135 SIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            45688899999999999999999999999999999999753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.87  E-value=0.00049  Score=46.47  Aligned_cols=40  Identities=13%  Similarity=0.209  Sum_probs=35.8

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      -+|.++.++..+|+.++.+|+.+++|++|++|++++|...
T Consensus        37 ~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A           37 LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            3578899999999999999999999999999999998754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.80  E-value=0.0008  Score=45.51  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .++..|...|..++.+||.+++++.|++|+++||..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~   38 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN   38 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            467788888888888888888888888888888864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.76  E-value=0.0012  Score=40.92  Aligned_cols=40  Identities=20%  Similarity=0.243  Sum_probs=36.5

Q ss_pred             CCchhhH-HHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~-aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..|.++. ++...|..++.+|+.+++++.|++|+++||...
T Consensus        29 ~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A           29 TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            4578888 999999999999999999999999999999754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.73  E-value=0.00093  Score=45.09  Aligned_cols=36  Identities=33%  Similarity=0.494  Sum_probs=31.9

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++...|..+|++||.+++|+.|++||++||..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~   41 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN   41 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            456666678999999999999999999999999974

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.66  E-value=0.0016  Score=46.97  Aligned_cols=47  Identities=6%  Similarity=-0.051  Sum_probs=31.2

Q ss_pred             cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +.++..+  .-+|.++.++...|+.++++|+.+++++.|++|+++||.-
T Consensus        23 ~~l~~al--~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~   69 (151)
T 3gyz_A           23 ATLKDIN--AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN   69 (151)
T ss_dssp             CCTGGGC--CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCHHHHh--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            3444444  4566777777777777777777777777777777777753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.0015  Score=42.08  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=34.2

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      |.++..+...|..++.+||.+++++.|++|++++|..
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   37 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED   37 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            4578889999999999999999999999999999974

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.52  E-value=0.0018  Score=44.61  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=34.8

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|+.++.+|+.+.+++.|.+|+++||..
T Consensus        59 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   98 (150)
T 4ga2_A           59 NVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ   98 (150)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence            4568888899999999999999999999999999999874

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.51  E-value=0.0013  Score=50.77  Aligned_cols=51  Identities=22%  Similarity=0.247  Sum_probs=43.6

Q ss_pred             cccccCCCCCchhhHHH----HHHHHHhhhhccccccHHHHHHHhhcCccccccCCc
Q 029343          111 WDALTGGNNNSREAVVA----IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKG  163 (194)
Q Consensus       111 Wd~~~GG~n~p~ea~aa----IRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kpy~~~  163 (194)
                      ||...  .-+|.++.++    .++|..+..+|+.+++|++|++|++++|.-+.--++
T Consensus        87 ~n~~~--e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~  141 (159)
T 2hr2_A           87 FNRRG--ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG  141 (159)
T ss_dssp             HHHHC--CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred             hhccc--cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            55554  6689999999    999999999999999999999999999986654443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.44  E-value=0.0023  Score=43.00  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=36.3

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|+.++++|+.+++++.|++|+++||..
T Consensus        45 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           45 QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            3568889999999999999999999999999999999974

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.40  E-value=0.0023  Score=46.13  Aligned_cols=39  Identities=5%  Similarity=-0.048  Sum_probs=30.2

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ..+|.++.++...|+.++.+|+.+++++.|++|+++||.
T Consensus        64 ~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            345777777777788888888888888888888888875

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.39  E-value=0.0029  Score=37.68  Aligned_cols=36  Identities=31%  Similarity=0.479  Sum_probs=21.6

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   41 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   41 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            445555556666666666666666666666666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.34  E-value=0.0027  Score=42.97  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=19.8

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |.++.++...|..++.+|+.+++++.|++|+++||.
T Consensus        42 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A           42 PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            444555555555555555555555555555555554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.25  E-value=0.0034  Score=42.02  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=17.2

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      |.++.++...|+.++.+|+.+++++.|++|++++|
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            44444444445555555555555555555555444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.21  E-value=0.0042  Score=39.67  Aligned_cols=40  Identities=10%  Similarity=0.252  Sum_probs=32.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|..++.+|+.+++++.|++|++++|..
T Consensus        13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   52 (115)
T 2kat_A           13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY   52 (115)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence            3457778888888888888888888888888888888864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.17  E-value=0.0047  Score=36.72  Aligned_cols=38  Identities=29%  Similarity=0.485  Sum_probs=34.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A           39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            46778889999999999999999999999999999853

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0039  Score=38.25  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=32.5

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ++.++...|..++.+|+.+++++.|++|++++|..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   37 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN   37 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            57788899999999999999999999999999974

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.11  E-value=0.0031  Score=40.96  Aligned_cols=38  Identities=13%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|+.++.+|+.+++++.|++|++++|..
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            47788888888888889999999999999999888875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.11  E-value=0.0069  Score=37.55  Aligned_cols=35  Identities=23%  Similarity=0.437  Sum_probs=18.2

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      +.++.++...|+.++.+||.+.+++.|++|++++|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~   47 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP   47 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            44455555555555555555555555555555544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.09  E-value=0.0041  Score=44.54  Aligned_cols=40  Identities=8%  Similarity=0.159  Sum_probs=37.0

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|..++.+|+.+++++.|++|+++||.-
T Consensus        82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            4568899999999999999999999999999999999975

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.09  E-value=0.0043  Score=42.99  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=16.3

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      |.++.++...|..+..+|+.+++++.|++|++++|
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            44444444444444444444444444444444444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.05  E-value=0.0017  Score=39.09  Aligned_cols=37  Identities=14%  Similarity=0.187  Sum_probs=30.1

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus        36 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A           36 DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            4667777778888888888888888888888888876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.02  E-value=0.0041  Score=42.03  Aligned_cols=37  Identities=5%  Similarity=0.087  Sum_probs=34.6

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +.++.++..+|+.++++|+.+.++++|++|+++||..
T Consensus        60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~   96 (162)
T 3rkv_A           60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN   96 (162)
T ss_dssp             HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence            6778899999999999999999999999999999974

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.91  E-value=0.0066  Score=38.70  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=17.1

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |.++.++...|+.++.+|+.+++++.|++|++++|.
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B           40 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            334444444444444444444444444444444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.91  E-value=0.0059  Score=38.93  Aligned_cols=39  Identities=23%  Similarity=0.193  Sum_probs=35.0

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .++.++..+...|..++.+||.+++++.|++|++++|..
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~   42 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV   42 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc
Confidence            457789999999999999999999999999999999974

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=95.88  E-value=0.0053  Score=42.99  Aligned_cols=36  Identities=6%  Similarity=0.103  Sum_probs=25.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      ++.||..+..+|..++.+|+.+++++.|++|++++|
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   38 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN   38 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC
Confidence            345667777777777777777777777777777776

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.83  E-value=0.0076  Score=40.76  Aligned_cols=39  Identities=10%  Similarity=0.195  Sum_probs=36.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+.++.++...|..++++||.+++++.|++|++++|..
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~   44 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN   44 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC
Confidence            567889999999999999999999999999999999973

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.81  E-value=0.0086  Score=35.87  Aligned_cols=34  Identities=15%  Similarity=-0.081  Sum_probs=18.5

Q ss_pred             hhHHHHHHHHHhhhh-ccccccHHHHHHHhhcCcc
Q 029343          123 EAVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       123 ea~aaIRRGM~lFrq-gDVeGSIaDFDkAIeLDPR  156 (194)
                      ++.++...|..++.+ |+.+.+++.|.++++.+|.
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            455555555555555 5555555555555555553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.81  E-value=0.0063  Score=40.72  Aligned_cols=39  Identities=10%  Similarity=0.029  Sum_probs=26.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+|.++.++...|+.++++|+.+++++.|++|+++||..
T Consensus        47 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A           47 LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            346666666666777777777777777777777776653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.64  E-value=0.0081  Score=43.28  Aligned_cols=40  Identities=13%  Similarity=0.116  Sum_probs=37.1

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|..+.++|+.+++++.|++|+++||..
T Consensus        33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~   72 (217)
T 2pl2_A           33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY   72 (217)
T ss_dssp             TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            5678999999999999999999999999999999999975

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.59  E-value=0.0075  Score=43.45  Aligned_cols=37  Identities=19%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      |+++.++...|..++++|+.+++++.|++|+++||..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   38 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD   38 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            6788999999999999999999999999999999975

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.59  E-value=0.0084  Score=41.50  Aligned_cols=38  Identities=8%  Similarity=0.029  Sum_probs=23.8

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+|.++.++...|+.++.+|+.+++++.|++|+++||.
T Consensus        50 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            34556666666666666666666666666666666664

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=95.53  E-value=0.0089  Score=45.12  Aligned_cols=50  Identities=18%  Similarity=0.262  Sum_probs=29.5

Q ss_pred             cccccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       105 p~~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +.+...|..++  ..+|.++.++...|..++++|+.+.+++.|++|++.+|.
T Consensus         9 ~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~   58 (450)
T 2y4t_A            9 SGVDLGTENLY--FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD   58 (450)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccccccccccc--cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            34555666666  667888888888888888888888888888888887775

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.52  E-value=0.0051  Score=42.87  Aligned_cols=54  Identities=11%  Similarity=0.241  Sum_probs=44.8

Q ss_pred             ccccccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (194)
Q Consensus       104 lp~~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp  159 (194)
                      ++.+-..|+...  ......+..+...|..+|++|+.+.+++.|++|++++|....
T Consensus        20 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~   73 (198)
T 2fbn_A           20 QGAKKSIYDYTD--EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE   73 (198)
T ss_dssp             --CCCSGGGCCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT
T ss_pred             ccccCchhhCCH--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence            456777888776  455778888999999999999999999999999999987543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.51  E-value=0.013  Score=35.28  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus        34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A           34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            3566777777888888888888888888888888775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.43  E-value=0.013  Score=40.36  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=36.3

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHH-HHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEF-DKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDF-DkAIeLDPR~  157 (194)
                      ..+|.++.++...|..++.+|+.+++++.| ++|+++||.-
T Consensus        93 ~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A           93 ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence            456899999999999999999999999986 9999999964

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.35  E-value=0.014  Score=37.03  Aligned_cols=37  Identities=19%  Similarity=0.418  Sum_probs=25.3

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            3555666666777777777777777777777777665

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=95.31  E-value=0.012  Score=48.41  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=16.7

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      +|.++.++..+|+.+..+|+.+++++.|++|+++||
T Consensus       162 ~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP  197 (382)
T 2h6f_A          162 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA  197 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            344444444444444444444444444444444444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.31  E-value=0.016  Score=35.84  Aligned_cols=38  Identities=18%  Similarity=0.165  Sum_probs=30.2

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|..++.+|+.+++++.|++|++++|..
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence            45677778888888888888888888888888888753

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.30  E-value=0.013  Score=40.84  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=35.7

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++.+.|..++.+|+.+++++.|.+|++++|..
T Consensus       117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            357788999999999999999999999999999999965

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.27  E-value=0.017  Score=35.21  Aligned_cols=39  Identities=31%  Similarity=0.342  Sum_probs=34.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            346778889999999999999999999999999998863

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=95.26  E-value=0.01  Score=39.77  Aligned_cols=41  Identities=7%  Similarity=0.074  Sum_probs=32.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .-+|.++.++...|+.+..+|+.+++++.|++|++++|...
T Consensus        79 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           79 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            45688889999999999999999999999999999999753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.18  E-value=0.019  Score=36.35  Aligned_cols=32  Identities=31%  Similarity=0.246  Sum_probs=17.0

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      +.++...|..++.+|+.+.+++.|++|++++|
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   96 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDG   96 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence            44455555555555555555555555555554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.18  E-value=0.0093  Score=38.40  Aligned_cols=40  Identities=13%  Similarity=0.165  Sum_probs=36.2

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|..++.+|+.+++++.|++|++++|+.
T Consensus        35 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A           35 ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            3457888999999999999999999999999999998864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.18  E-value=0.013  Score=45.83  Aligned_cols=40  Identities=28%  Similarity=0.312  Sum_probs=36.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .+|.++.++.++|..++.+|+.++++++|++|++++|...
T Consensus       225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence            4578899999999999999999999999999999999753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.15  E-value=0.017  Score=37.24  Aligned_cols=39  Identities=10%  Similarity=0.245  Sum_probs=35.3

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++...|..++.+|+.+++++.|++|++++|.-
T Consensus        76 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  114 (166)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            347788899999999999999999999999999999864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=95.15  E-value=0.012  Score=38.06  Aligned_cols=40  Identities=15%  Similarity=0.160  Sum_probs=35.8

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ...|.++.++...|+.++.+|+.+++++.|++|++++|.-
T Consensus        55 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           55 KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             HhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            3457889999999999999999999999999999997753

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.13  E-value=0.018  Score=36.29  Aligned_cols=33  Identities=12%  Similarity=0.111  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       125 ~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .++...|+.++.+||.+++++.|+++++.+|.-
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            566677777777777777777777777777653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=95.13  E-value=0.017  Score=39.75  Aligned_cols=40  Identities=8%  Similarity=0.009  Sum_probs=36.9

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|+.+..+|+.+++++.|+++++++|..
T Consensus       102 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          102 AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            3568899999999999999999999999999999999974

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=95.08  E-value=0.015  Score=41.62  Aligned_cols=35  Identities=6%  Similarity=0.106  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ++......|..++++|+.+++++.|++|+++||.-
T Consensus        53 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   87 (208)
T 3urz_A           53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN   87 (208)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            33333349999999999999999999999999974

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=94.89  E-value=0.025  Score=34.37  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=32.9

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   79 (131)
T 2vyi_A           42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY   79 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence            46678888889999999999999999999999998863

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=94.86  E-value=0.019  Score=47.17  Aligned_cols=40  Identities=13%  Similarity=0.072  Sum_probs=33.3

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.++.++..+|..+.++|+.+++++.|++||++||+.
T Consensus       194 ~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          194 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            3467888888888888888888888888888888888874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=94.83  E-value=0.025  Score=35.59  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +.++...|+.++.+|+.+++++.|+++++.+|.-
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            7889999999999999999999999999999863

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=94.82  E-value=0.029  Score=33.63  Aligned_cols=39  Identities=5%  Similarity=-0.013  Sum_probs=35.0

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++...|..++.+|+.+++++.|++|++++|.-
T Consensus        67 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            346678899999999999999999999999999999864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=94.78  E-value=0.025  Score=37.79  Aligned_cols=37  Identities=19%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ++.++.++...|..++.+|+.+.+++.|+++++++|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   40 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK   40 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc
Confidence            3455555555555555555555555555555555554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=94.73  E-value=0.018  Score=44.53  Aligned_cols=40  Identities=23%  Similarity=0.463  Sum_probs=36.1

Q ss_pred             CCCchhhHHHHHHHHHhhhhcc----------ccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgD----------VeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.++.+++..|..+..+++          ++++|+.|++||++||..
T Consensus        30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~   79 (158)
T 1zu2_A           30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK   79 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence            5679999999999999999887          459999999999999985

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=94.73  E-value=0.02  Score=47.09  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=33.5

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .+|.++.++.++|..+..+|+.+.++++|++|+++||...
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            4578899999999999999999999999999999999654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.65  E-value=0.025  Score=39.54  Aligned_cols=41  Identities=15%  Similarity=0.088  Sum_probs=36.8

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..+|.++.++...|..++.+||.+++++.|++|++++|.-.
T Consensus        70 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           70 KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            45688999999999999999999999999999999999743

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.64  E-value=0.02  Score=35.21  Aligned_cols=31  Identities=16%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             HHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       127 aIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+.+|..++.+|+.+++++.|++|++++|.-
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   33 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG   33 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            3678999999999999999999999999975

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.56  E-value=0.021  Score=38.58  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=30.3

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus        39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   76 (177)
T 2e2e_A           39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE   76 (177)
T ss_dssp             HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS
T ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            45677778888888888888888888888888888875

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=94.55  E-value=0.031  Score=38.17  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=35.6

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .+|.++.++...|..++.+|+.+++++.|++|++++|.-.
T Consensus        66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            3477889999999999999999999999999999998643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.50  E-value=0.034  Score=33.95  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus        34 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A           34 DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            46677778888888888888888888888888888764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=94.40  E-value=0.023  Score=43.79  Aligned_cols=36  Identities=14%  Similarity=0.050  Sum_probs=33.2

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhc-------Ccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL-------DPR  156 (194)
                      |.++.++..+|+.+..+|+.+++|++||+||++       ||.
T Consensus        54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd   96 (159)
T 2hr2_A           54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD   96 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence            456779999999999999999999999999999       985

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=94.40  E-value=0.033  Score=39.97  Aligned_cols=38  Identities=18%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      +..+.++...|+.++++||.+.+|+.|+++++++|.-.
T Consensus        38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A           38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            34467889999999999999999999999999999854

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=94.37  E-value=0.036  Score=35.72  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=33.2

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus        43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   80 (166)
T 1a17_A           43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   80 (166)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            46678888899999999999999999999999999853

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=94.34  E-value=0.029  Score=42.49  Aligned_cols=40  Identities=13%  Similarity=0.131  Sum_probs=30.4

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|..++.+|+.+++++.|.+|++++|..
T Consensus        66 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           66 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            4557777777777888888888888888888888877754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=94.29  E-value=0.043  Score=33.04  Aligned_cols=38  Identities=29%  Similarity=0.485  Sum_probs=32.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+.++..+...|..++.+|+.+.+++.|+++++++|..
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            35667788888999999999999999999999998854

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=94.27  E-value=0.04  Score=37.64  Aligned_cols=44  Identities=7%  Similarity=0.037  Sum_probs=38.3

Q ss_pred             ccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          114 LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       114 ~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|....+.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            33335667788999999999999999999999999999999965

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=94.26  E-value=0.038  Score=39.34  Aligned_cols=39  Identities=8%  Similarity=0.071  Sum_probs=34.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++...|..+..+|+.+.+++.|.+|++++|.-
T Consensus       301 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          301 MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            357788889999999999999999999999999999863

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.25  E-value=0.014  Score=44.64  Aligned_cols=40  Identities=8%  Similarity=0.009  Sum_probs=20.6

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .+|.++.++...|..+..+||.+.+++.|.+|++++|...
T Consensus       425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p  464 (472)
T 4g1t_A          425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP  464 (472)
T ss_dssp             HCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence            4688999999999999999999999999999999998864

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.10  E-value=0.046  Score=36.86  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=36.2

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|..++.+|+.+.+++.|++|++++|.-
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            3457888999999999999999999999999999999974

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.10  E-value=0.024  Score=44.53  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ...|.++.++.++|+.+..+|+.++++++|.+|++++|...
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~  298 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK  298 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            34578899999999999999999999999999999999743

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.04  E-value=0.028  Score=34.34  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=32.5

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+..+...|...+.+|+.+.+++.|++|++++|..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~   37 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN   37 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence            467788899999999999999999999999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=94.04  E-value=0.035  Score=42.10  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=34.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++..+|+.++.+|+.++++++|++|++++|..
T Consensus        33 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A           33 RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            457888999999999999999999999999999998864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=94.00  E-value=0.046  Score=32.91  Aligned_cols=37  Identities=30%  Similarity=0.492  Sum_probs=25.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+.++.++...|..++.+|+.+.+++.|+++++++|.
T Consensus        39 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   75 (125)
T 1na0_A           39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence            3455666666677777777777777777777777664

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=93.86  E-value=0.03  Score=35.60  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=35.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++...|..+..+|+.+++++.|++|++++|..
T Consensus        48 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           48 FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            346778888999999999999999999999999999864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=93.81  E-value=0.055  Score=32.58  Aligned_cols=36  Identities=36%  Similarity=0.560  Sum_probs=28.3

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +.++..+...|..++.+|+.+.+++.|+++++++|.
T Consensus       100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            555667777788888888888888888888888875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=93.78  E-value=0.042  Score=44.42  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=29.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ...|.++.++.++|+.++.+|+.++++++|.+|++++|.
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            345677777777788888888888888888888877775

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=93.72  E-value=0.055  Score=36.92  Aligned_cols=37  Identities=27%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus       169 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  205 (258)
T 3uq3_A          169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN  205 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence            4566777777788888888888888888888888776

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=93.69  E-value=0.036  Score=39.87  Aligned_cols=40  Identities=8%  Similarity=0.142  Sum_probs=33.0

Q ss_pred             CCCchh---hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~e---a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ...|.+   +.++...|+.++++||.+.+++.|+++++++|.-
T Consensus        43 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~   85 (261)
T 3qky_A           43 TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID   85 (261)
T ss_dssp             GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence            334555   7888899999999999999999999999998853

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=93.60  E-value=0.042  Score=38.20  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   75 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD   75 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence            3455666666666666666666666666666666664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=93.60  E-value=0.061  Score=38.64  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=35.7

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ...+.++..+...|..++++|+.+++++.|+++++.+|.-
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~   48 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH   48 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            3467889999999999999999999999999999999864

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=93.54  E-value=0.053  Score=40.66  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=17.6

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |.++.++...|..++++|+.+++++.|++|++++|.
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   99 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD   99 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc
Confidence            444444444455555555555555555555544443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.44  E-value=0.014  Score=40.14  Aligned_cols=38  Identities=5%  Similarity=-0.097  Sum_probs=34.3

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      ..+|.++.++...|..+.++|+.+++++.|++|++++|
T Consensus        34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A           34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            34688889999999999999999999999999999988

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=93.38  E-value=0.064  Score=37.27  Aligned_cols=40  Identities=15%  Similarity=0.178  Sum_probs=35.7

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..|.++.++...|..++.+|+.+++++.|++|++++|...
T Consensus       106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            3567788999999999999999999999999999999764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=93.38  E-value=0.027  Score=44.09  Aligned_cols=48  Identities=13%  Similarity=0.376  Sum_probs=40.5

Q ss_pred             cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..|+..+  ..++.++.++...|..+|++|+.+.+++.|++|++++|...
T Consensus       134 ~~~~~a~--~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~  181 (336)
T 1p5q_A          134 ESWEMNS--EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES  181 (336)
T ss_dssp             CGGGCCH--HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC
T ss_pred             chhcCCH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc
Confidence            3455444  44678889999999999999999999999999999999863

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.33  E-value=0.037  Score=47.96  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=19.5

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+|.++.++..+|..++.+|+.+++++.|++|+++||.
T Consensus       428 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          428 DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            34555555555555555555555555555555555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.22  E-value=0.085  Score=35.70  Aligned_cols=40  Identities=3%  Similarity=-0.095  Sum_probs=34.8

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp  159 (194)
                      -.|.++.+.+=.|+..|++||.++.|+.+.++++.||. .|
T Consensus        38 ~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~   77 (93)
T 3bee_A           38 LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NL   77 (93)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TC
T ss_pred             HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Cc
Confidence            45777777777899999999999999999999999997 54

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.20  E-value=0.061  Score=41.25  Aligned_cols=38  Identities=13%  Similarity=0.122  Sum_probs=35.0

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|+.+.++|+.+++++.|++|+++||.-
T Consensus       196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~  233 (291)
T 3mkr_A          196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH  233 (291)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            57788888899999999999999999999999999964

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=93.17  E-value=0.065  Score=38.09  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus        32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   70 (359)
T 3ieg_A           32 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF   70 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence            457788888888888888888888888888888888754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=93.16  E-value=0.041  Score=38.49  Aligned_cols=35  Identities=6%  Similarity=0.082  Sum_probs=27.2

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhh
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE  152 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIe  152 (194)
                      ...|.++.++...|..++.+|+.+.+++.|++|++
T Consensus        31 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   65 (272)
T 3u4t_A           31 AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS   65 (272)
T ss_dssp             HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34567777777788888888888888888888887

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=93.12  E-value=0.066  Score=41.22  Aligned_cols=39  Identities=21%  Similarity=0.259  Sum_probs=30.5

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++...|..++++|+.+.+++.|++|+++||..
T Consensus        54 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~   92 (537)
T 3fp2_A           54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH   92 (537)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence            456777788888888888888888888888888888763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=93.07  E-value=0.076  Score=36.20  Aligned_cols=39  Identities=23%  Similarity=0.288  Sum_probs=36.4

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+|.++.++...|..++.+|+.+.+++.|++|++++|..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  172 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED  172 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence            568899999999999999999999999999999999873

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.93  E-value=0.034  Score=42.96  Aligned_cols=40  Identities=10%  Similarity=0.058  Sum_probs=36.1

Q ss_pred             CCCchhhHHHHHHHHHhhhhc-----------cccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQG-----------DVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqg-----------DVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.++.++...|..+..+|           +.+++++.|++|+++||.-
T Consensus        74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            356889999999999999985           9999999999999999974

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=92.78  E-value=0.096  Score=35.67  Aligned_cols=48  Identities=25%  Similarity=0.337  Sum_probs=37.8

Q ss_pred             cccccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       107 ~sgiWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +...++..+  ...|.++.++...|..++.+|+.+.+++.|+++++++|.
T Consensus        42 A~~~~~~~l--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   89 (243)
T 2q7f_A           42 AAEAFTKAI--EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS   89 (243)
T ss_dssp             CCTTHHHHH--TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHH--HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence            334445555  466778888888899999999999999999999998885

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=92.69  E-value=0.088  Score=38.97  Aligned_cols=36  Identities=14%  Similarity=0.232  Sum_probs=18.2

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus        96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  131 (365)
T 4eqf_A           96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN  131 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            444444445555555555555555555555555443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=92.60  E-value=0.11  Score=33.19  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=19.1

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      +.++.++...|..++.+|+.+.+++.|+++++++|
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~   73 (186)
T 3as5_A           39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP   73 (186)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            34455555555555555555555555555555554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=92.60  E-value=0.059  Score=37.71  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=19.8

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +|.++.++...|...+.+++.+.+++.|++|++++|.
T Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  174 (272)
T 3u4t_A          138 TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN  174 (272)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            4555555555554444444555555555555555554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.38  E-value=0.058  Score=46.72  Aligned_cols=39  Identities=21%  Similarity=0.159  Sum_probs=31.4

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      -+|.++.++..+|+.+.++|+.++++++|++|+++||..
T Consensus       529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          529 TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence            457777888888888888888888888888888888864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=92.27  E-value=0.084  Score=47.70  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=25.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +.|++|.++...|..+..+|+.+++++.|++|+++||..
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~   42 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF   42 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            456666666666666666666666666666666666653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=92.18  E-value=0.1  Score=39.11  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=27.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|..+.++|+.+.+++.|++|++++|..
T Consensus       165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  202 (388)
T 1w3b_A          165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF  202 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            45666677777777777777777777777777777753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=92.02  E-value=0.036  Score=45.49  Aligned_cols=48  Identities=17%  Similarity=0.372  Sum_probs=39.8

Q ss_pred             cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..|+..+  ..++.++.++..+|..+|++|+.+.+++.|++|++++|...
T Consensus       255 ~~~~~~~--~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~  302 (457)
T 1kt0_A          255 ESWEMDT--KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY  302 (457)
T ss_dssp             CGGGSCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC
T ss_pred             chhhcCH--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc
Confidence            3454444  34567888999999999999999999999999999999863

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=92.01  E-value=0.17  Score=35.08  Aligned_cols=32  Identities=25%  Similarity=0.432  Sum_probs=15.9

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      +.++...|..++.+|+.+.+++.|++|++++|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   68 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP   68 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            44444445555555555555555555555444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=92.00  E-value=0.15  Score=30.65  Aligned_cols=38  Identities=34%  Similarity=0.552  Sum_probs=33.1

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+.++..+...|..++.+|+.+.+++.|+++++.+|..
T Consensus        65 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  102 (136)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            35567788888999999999999999999999998863

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=91.93  E-value=0.15  Score=34.67  Aligned_cols=36  Identities=19%  Similarity=0.258  Sum_probs=23.1

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus       190 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence            445556666666666666666666666666666664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.88  E-value=0.14  Score=34.59  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=34.2

Q ss_pred             CchhhHHHHHHHHHhhhhcc---ccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGD---VVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgD---VeGSIaDFDkAIeLDPR~  157 (194)
                      .|.||..+...|..++.+++   .+...+.|++|+++||.-
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~   42 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN   42 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC
Confidence            57899999999999987777   689999999999999974

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=91.85  E-value=0.15  Score=34.01  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=21.9

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus        39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   74 (225)
T 2vq2_A           39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD   74 (225)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            444555556666666666666666666666666654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=91.72  E-value=0.11  Score=47.03  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=23.7

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +|.++.++...|+.+..+|+.+++++.|++|+++||..
T Consensus       107 ~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A          107 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            45556666666666666666666666666666666653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=91.58  E-value=0.14  Score=38.49  Aligned_cols=38  Identities=8%  Similarity=0.096  Sum_probs=35.1

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .|.++.++...|..+..+|+.+++++.|.+|++++|..
T Consensus       325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence            57788999999999999999999999999999999975

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=91.51  E-value=0.16  Score=35.97  Aligned_cols=37  Identities=14%  Similarity=0.031  Sum_probs=20.8

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .|.++.++...|..++.+|+.+++++.|++|++++|.
T Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  157 (330)
T 3hym_B          121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG  157 (330)
T ss_dssp             CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence            3445555555555555555555555555555555554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=91.45  E-value=0.13  Score=36.74  Aligned_cols=35  Identities=6%  Similarity=0.021  Sum_probs=31.7

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+..+...|+.++.+||.+++++.|+++++.+|.-
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~   37 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG   37 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            46678899999999999999999999999998863

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=91.27  E-value=0.15  Score=42.54  Aligned_cols=37  Identities=11%  Similarity=0.277  Sum_probs=19.4

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .|.++.++.+.|+.++.+|+.+++++.|++|++++|.
T Consensus        70 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  106 (477)
T 1wao_1           70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  106 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3444555555555555555555555555555555544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=91.24  E-value=0.17  Score=36.91  Aligned_cols=37  Identities=3%  Similarity=-0.010  Sum_probs=20.5

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      |.++.++...|..+..+|+.+++++.|+++++++|..
T Consensus       129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A          129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY  165 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            4445555555555555555555555555555555543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=91.11  E-value=0.17  Score=36.94  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=27.8

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ....+.++...|..++.+|+.+++++.|++|++++|.
T Consensus         5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~   41 (406)
T 3sf4_A            5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE   41 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc
Confidence            3445566677888888888888888888888888765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=91.10  E-value=0.16  Score=38.33  Aligned_cols=39  Identities=15%  Similarity=0.182  Sum_probs=36.2

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+|.++.+....|..+..+|+.+++++.|.+++++||..
T Consensus       214 ~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          214 ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            468899999999999999999999999999999999975

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=91.08  E-value=0.18  Score=36.78  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      |.++.++...|..+..+|+.+.+++.|++|++++|
T Consensus       248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  282 (368)
T 1fch_A          248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP  282 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            44455555556666666666666666666666555

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=91.08  E-value=0.2  Score=31.99  Aligned_cols=34  Identities=21%  Similarity=0.141  Sum_probs=16.2

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      .++.++...|..++.+|+.+.+++.|+++++.+|
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  107 (186)
T 3as5_A           74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP  107 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence            3344444444444444555555555555444444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=90.92  E-value=0.22  Score=34.89  Aligned_cols=39  Identities=18%  Similarity=0.056  Sum_probs=36.3

Q ss_pred             cCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343          115 TGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL  153 (194)
Q Consensus       115 ~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL  153 (194)
                      .+|.+.|.++.++...|..++.+|+.+.+++.|++|+++
T Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   56 (311)
T 3nf1_A           18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED   56 (311)
T ss_dssp             SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999997

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=90.87  E-value=0.13  Score=36.36  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=23.0

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |.++.++...|..+..+|+.+.+++.|++|++++|.
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            445556666666666666666666666666666664

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=90.83  E-value=0.17  Score=41.43  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=35.1

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+|.++.++...|..++.+||.+++++.|++|++++|.
T Consensus       132 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  169 (474)
T 4abn_A          132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN  169 (474)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45788899999999999999999999999999999987

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=90.67  E-value=0.25  Score=34.25  Aligned_cols=38  Identities=13%  Similarity=0.179  Sum_probs=31.4

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ..+.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            45777888888888888888888888888888888875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=90.64  E-value=0.17  Score=41.91  Aligned_cols=46  Identities=15%  Similarity=0.099  Sum_probs=37.4

Q ss_pred             cccccCCCCCch-hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          111 WDALTGGNNNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       111 Wd~~~GG~n~p~-ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |+..+.|...|. .+.+.+++||.+.++|+.+++++.|+++++.+|.
T Consensus       194 l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            444444433254 6678899999999999999999999999999997

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=90.55  E-value=0.2  Score=38.01  Aligned_cols=38  Identities=11%  Similarity=-0.032  Sum_probs=34.6

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+|.++.++...|..++.+|+.+++++.|+++++++|.
T Consensus        68 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  105 (514)
T 2gw1_A           68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF  105 (514)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             cChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45788899999999999999999999999999999983

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=90.54  E-value=0.21  Score=36.96  Aligned_cols=34  Identities=18%  Similarity=0.182  Sum_probs=14.9

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ++.++...|..++.+|+.+++++.|++|++++|.
T Consensus       280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            3333344444444444444444444444444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=90.53  E-value=0.22  Score=35.15  Aligned_cols=39  Identities=8%  Similarity=0.122  Sum_probs=25.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .|.++.++...|..+..+|+.+++++.|+++++++|...
T Consensus        85 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A           85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence            355566666666666777777777777777777666543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=90.44  E-value=0.19  Score=41.15  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=34.7

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .++.++...|+.++.+|+.+++++.|++|+++||..
T Consensus       256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            899999999999999999999999999999999985

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=90.40  E-value=0.23  Score=38.24  Aligned_cols=37  Identities=30%  Similarity=0.411  Sum_probs=32.6

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ...+.++...|..++++|+.+++++.|++|+++||.-
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~   58 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE   58 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence            3467889999999999999999999999999999864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=89.86  E-value=0.22  Score=37.72  Aligned_cols=35  Identities=26%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      |+.++..+|..++.+|+.+.+++.|++|++++|..
T Consensus        38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~   72 (514)
T 2gw1_A           38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY   72 (514)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred             cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence            68888888999999999999999999999988854

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=89.72  E-value=0.26  Score=34.24  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=21.3

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +...+...|..++.+||.+.+++.|++|++++|.
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~   37 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE   37 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc
Confidence            3444555666666666666666666666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=89.69  E-value=0.12  Score=32.01  Aligned_cols=35  Identities=9%  Similarity=0.097  Sum_probs=20.2

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ..+.++...|+.++.+|+.+.+++.|++|+++.++
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   41 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE   41 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            33445555566666666666666666666665544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=89.68  E-value=0.22  Score=41.45  Aligned_cols=39  Identities=23%  Similarity=0.228  Sum_probs=35.6

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+|.++.++...|+.++++|+.+++++.|++|+++||..
T Consensus        35 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1           35 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            357789999999999999999999999999999999964

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=89.68  E-value=0.28  Score=34.58  Aligned_cols=36  Identities=14%  Similarity=0.310  Sum_probs=22.0

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      |.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus       203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  238 (327)
T 3cv0_A          203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG  238 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            445555555666666666666666666666666654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=89.65  E-value=0.18  Score=35.38  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=34.2

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+.+.++.++...|..++++|+.+.+++.|++|++++|.
T Consensus       272 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          272 VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            367888999999999999999999999999999999874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=89.44  E-value=0.25  Score=37.29  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      |.++.+....|..+.++||.+++++.|.+|+++||.-
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~  150 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN  150 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc
Confidence            5677778888999999999999999999999999864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=89.42  E-value=0.24  Score=33.91  Aligned_cols=38  Identities=18%  Similarity=0.130  Sum_probs=34.5

Q ss_pred             CCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343          116 GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL  153 (194)
Q Consensus       116 GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL  153 (194)
                      +|.+.+..+.++...|..++.+|+.+.+++.|++|+++
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34566888999999999999999999999999999998

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=89.38  E-value=0.32  Score=32.13  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=33.3

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ...+..+..-|-.+|++|+++.++.-+.+|++++|.-.
T Consensus        43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A           43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            45566777889999999999999999999999999863

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=89.06  E-value=0.25  Score=39.89  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=33.2

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .+.++.++...|..++++|+.+++++.+++|+++||.
T Consensus       269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            4566777888899999999999999999999999995

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=88.88  E-value=0.26  Score=40.23  Aligned_cols=37  Identities=14%  Similarity=0.188  Sum_probs=19.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +|.++.++...|..+..+|+.+++++.|++|++++|.
T Consensus        53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   89 (568)
T 2vsy_A           53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE   89 (568)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            3444555555555555555555555555555555554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=88.68  E-value=0.34  Score=33.14  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=34.0

Q ss_pred             CCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhc
Q 029343          117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL  153 (194)
Q Consensus       117 G~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeL  153 (194)
                      |.+.+..+.++...|..+..+|+.+.+++.|.+|+++
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  114 (283)
T 3edt_B           78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  114 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3467888999999999999999999999999999998

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=87.80  E-value=0.37  Score=39.33  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=34.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|..++.+|+.+++++.|++|++++|..
T Consensus        85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A           85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            3457788888888999999999999999999999999864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=87.38  E-value=0.42  Score=35.66  Aligned_cols=38  Identities=26%  Similarity=0.271  Sum_probs=33.1

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ++.++..+...|..++.+||.+.+++.|++|++++|.-
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~   81 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED   81 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC
Confidence            35677788889999999999999999999999998863

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=87.21  E-value=0.43  Score=37.53  Aligned_cols=32  Identities=9%  Similarity=0.057  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      +.++...|..+.++|+++++++.|+++++++|
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            44444555555555555555555555555554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=86.72  E-value=0.4  Score=35.90  Aligned_cols=36  Identities=14%  Similarity=0.215  Sum_probs=27.7

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp  159 (194)
                      +.++...|..+..+||.+++++.|++|+++||....
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            346788999999999999999999999999998654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=86.25  E-value=0.59  Score=34.99  Aligned_cols=38  Identities=18%  Similarity=0.058  Sum_probs=28.8

Q ss_pred             CCchhhH-HHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~-aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ..|.++. +++..|..+.++|+++++++.|++|++++|.
T Consensus       128 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  166 (308)
T 2ond_A          128 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            4466665 7777787778888888888888888888774

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=86.13  E-value=0.5  Score=35.37  Aligned_cols=37  Identities=8%  Similarity=0.062  Sum_probs=26.0

Q ss_pred             chhhHHHHHHHHHhhh-hccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFR-QGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFr-qgDVeGSIaDFDkAIeLDPR~  157 (194)
                      |.++.+++..+...+. +|+.+.+++.|++|++++|..
T Consensus       165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~  202 (308)
T 2ond_A          165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4445555544444343 699999999999999999864

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=85.91  E-value=0.58  Score=35.74  Aligned_cols=39  Identities=15%  Similarity=0.143  Sum_probs=34.8

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..|.++.++...|..+..+|+.+.+++.|++|++.+|..
T Consensus       242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  280 (472)
T 4g1t_A          242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN  280 (472)
T ss_dssp             HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh
Confidence            356777888888999999999999999999999999974

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=85.49  E-value=0.2  Score=39.27  Aligned_cols=48  Identities=15%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..|+...  ...+..+.++...|..+|++|+.+.+++.|.+|++++|...
T Consensus       166 ~~~~~~~--~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~  213 (338)
T 2if4_A          166 ARSDMTV--EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF  213 (338)
T ss_dssp             TTTBCCH--HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH
T ss_pred             ccccCCH--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Confidence            3565555  44567888889999999999999999999999999999754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=84.99  E-value=0.7  Score=33.04  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=15.8

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhh
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE  152 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIe  152 (194)
                      +++|.++...|..++.+||.+.+++.|.+|++
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~   34 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD   34 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            34455555555555555555555555555554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=84.38  E-value=0.37  Score=36.07  Aligned_cols=37  Identities=14%  Similarity=0.187  Sum_probs=33.1

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ...+.++...|+.+..+|+.+++++.|++|++++|+.
T Consensus        74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~  110 (292)
T 1qqe_A           74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR  110 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            3457888899999999999999999999999999875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=83.38  E-value=0.89  Score=35.73  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=22.9

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +.++..+...|..+.+.|+++++++.|+++++++|.
T Consensus       370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  405 (597)
T 2xpi_A          370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ  405 (597)
T ss_dssp             TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            455556666666666666666666666666666654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=82.59  E-value=0.93  Score=34.62  Aligned_cols=37  Identities=11%  Similarity=0.038  Sum_probs=34.0

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +.++.++...|..+.++|+.+++++.|+++++++|..
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  163 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA  163 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence            6778888999999999999999999999999999864

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=82.13  E-value=0.85  Score=39.72  Aligned_cols=36  Identities=11%  Similarity=0.197  Sum_probs=22.7

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +.+|..+..-++..+.+||++++++.+++|++++|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s  309 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS  309 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            555666666666666666666666666666666653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=81.63  E-value=0.77  Score=28.34  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +.++...|..++.+|+.+.+++.|++|+++.++.
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            4566777888999999999999999998887764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=80.88  E-value=0.97  Score=30.00  Aligned_cols=37  Identities=19%  Similarity=0.102  Sum_probs=32.3

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      +.+..+.++...|+.+..+||.+++++.|++|+++..
T Consensus        61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   97 (203)
T 3gw4_A           61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA   97 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4466778888899999999999999999999999943

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-04

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 6e-04
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
            N  R+       G+   ++GD+  +V  F+ A++ DP
Sbjct: 13  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.07
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.01
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.99
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.96
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.67
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.62
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.53
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.46
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.45
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.3
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.19
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.09
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.39
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.38
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.35
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.16
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	95.07
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.07
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.02
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	94.86
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.48
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.02
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	93.15
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	93.09
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	92.04
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	91.64
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	90.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	87.37
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	87.02
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	85.36
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	81.45
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	80.23

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00018  Score=48.01  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=23.4

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +|.++.++..+|+.+++.|+.+.+|++|++|+++||.
T Consensus        34 ~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~   70 (201)
T d2c2la1          34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (201)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC
Confidence            4556666666666666666666666666666666664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.01  E-value=0.0002  Score=49.22  Aligned_cols=40  Identities=15%  Similarity=0.171  Sum_probs=37.1

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.++.++.++|+.++.+||.+.++++|.+|+++||.-
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            3568899999999999999999999999999999999964

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00023  Score=49.74  Aligned_cols=40  Identities=25%  Similarity=0.292  Sum_probs=37.3

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++.++|+.++.+|+.++++++|.+|+++||.-
T Consensus        90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            4579999999999999999999999999999999999963

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.96  E-value=0.00026  Score=48.93  Aligned_cols=42  Identities=21%  Similarity=0.359  Sum_probs=38.1

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp  159 (194)
                      .-+|.++.++.++|+.++.+|+.+.++++|.+|+++||.-..
T Consensus        92 ~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          92 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            346889999999999999999999999999999999998543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.86  E-value=0.00033  Score=47.94  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=37.3

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      .-+|.++.++.++|..++.+|+.+.++++|.+|+++||.
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~  143 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  143 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            567999999999999999999999999999999999996

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00024  Score=48.77  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=24.3

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +.++.++..+|+.++++|+.+.+++.|++|+++||.
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~   69 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD   69 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Confidence            445666666677777777777777777777777665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00053  Score=45.08  Aligned_cols=39  Identities=18%  Similarity=0.237  Sum_probs=27.3

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      -+|.++.++.-+|+.++.+|+.+.||++|++|+++||..
T Consensus        32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   70 (117)
T d1elwa_          32 LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW   70 (117)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             cCCcchhhhhcccccccccccccccchhhhhHHHhccch
Confidence            456667777777777777777777777777777777653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.67  E-value=0.0006  Score=44.65  Aligned_cols=41  Identities=12%  Similarity=0.098  Sum_probs=37.0

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ..+|.++.++..+|+.+++.|+.+.+++.|++|+++||...
T Consensus        44 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   84 (112)
T d1hxia_          44 QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI   84 (112)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc
Confidence            46788999999999999999999999999999999999853

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00066  Score=48.31  Aligned_cols=38  Identities=18%  Similarity=0.259  Sum_probs=34.5

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      -+|.++.++..+|+.++++|+.++++++|++|++.++.
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            45889999999999999999999999999999988653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00091  Score=43.90  Aligned_cols=47  Identities=4%  Similarity=-0.089  Sum_probs=40.7

Q ss_pred             ccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       110 iWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .|+..+  .-+|.++.++.++|+.+..+|+.+.++..|.+|+++||.-.
T Consensus        59 ~~~~al--~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          59 DGCKTV--DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             HHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             hhhhHH--HhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            344445  45689999999999999999999999999999999999753

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.00082  Score=44.61  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=33.4

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .++..+...|..+|++||.+.+|+.|++||++||.-
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~   37 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV   37 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            467788999999999999999999999999999975

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0009  Score=47.58  Aligned_cols=37  Identities=11%  Similarity=0.193  Sum_probs=33.9

Q ss_pred             chhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       121 p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +.+|..+..+|+.++.+|+.+.++++|++||++||..
T Consensus        33 ~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~   69 (192)
T d1hh8a_          33 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL   69 (192)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh
Confidence            4567888899999999999999999999999999975

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00094  Score=45.67  Aligned_cols=39  Identities=26%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      -+|.+|.++-.+|..+.++|+.+.+++.|++|+++||..
T Consensus        66 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  104 (259)
T d1xnfa_          66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY  104 (259)
T ss_dssp             HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh
Confidence            356777777778888888888888888888888888763

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00062  Score=45.40  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=37.3

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .-+|.++.++..+|..++++|+.+.++++|++||++||+..
T Consensus        32 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~   72 (128)
T d1elra_          32 ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (128)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             HhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence            34688899999999999999999999999999999999865

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0013  Score=44.21  Aligned_cols=38  Identities=11%  Similarity=0.244  Sum_probs=26.5

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      -+|.++.++.++|..++.+||.++++++|++|++++|.
T Consensus        73 ~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            35666677777777777777777777777777777664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0017  Score=44.50  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=36.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++...|..++.+|+.+++++.|++|+++||..
T Consensus       333 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4578889999999999999999999999999999999964

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.002  Score=43.34  Aligned_cols=40  Identities=23%  Similarity=0.230  Sum_probs=37.7

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-+|.++.++..+|..++..|+.+.++++|++|+++||..
T Consensus        38 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_          38 ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            4568999999999999999999999999999999999987

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0021  Score=42.66  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=33.1

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+|..+...|..+|++|+.+.+|+.|++||++||..
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~   37 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN   37 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            567888899999999999999999999999999963

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.95  E-value=0.002  Score=44.24  Aligned_cols=39  Identities=23%  Similarity=0.468  Sum_probs=33.8

Q ss_pred             CCchhhHHHHHHHHHhhhhcc----------ccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgD----------VeGSIaDFDkAIeLDPR~  157 (194)
                      -+|.|+.++...|+.+...++          ++.+|+.|++|+++||+.
T Consensus        26 ~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~   74 (145)
T d1zu2a1          26 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK   74 (145)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh
Confidence            469999999999999986544          567999999999999975

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0035  Score=44.11  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=31.4

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      .+|+++.++...|..++.+|+.+.+++.|++|++++|.-.
T Consensus       235 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         235 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence            4567777888888888888888888888888888888653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.38  E-value=0.0032  Score=41.04  Aligned_cols=36  Identities=8%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .+...+.+.|+.++++|+.+.++..|++|++.+|.-
T Consensus        14 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~   49 (112)
T d1hxia_          14 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPER   49 (112)
T ss_dssp             GGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhhhccccccc
Confidence            344456789999999999999999999999999974

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.35  E-value=0.0032  Score=42.65  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             hhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (194)
Q Consensus       122 ~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp  159 (194)
                      ..+.++.++|+.+..+|+.+.+++.|++|++++|....
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            34567889999999999999999999999999987653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0099  Score=37.95  Aligned_cols=39  Identities=23%  Similarity=0.320  Sum_probs=34.1

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      ....+..+--.|..++++||.+++++.|.+|+++||.-.
T Consensus        42 ~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_          42 TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            345567788889999999999999999999999999753

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.008  Score=41.04  Aligned_cols=40  Identities=15%  Similarity=0.070  Sum_probs=35.7

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ...|.++.++...|..++++|+.+.+++.|++|++++|..
T Consensus        27 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   66 (388)
T d1w3ba_          27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL   66 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4568889999999999999999999999999999999864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0078  Score=45.18  Aligned_cols=40  Identities=13%  Similarity=0.072  Sum_probs=27.0

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .-.|.++.++..+|..+...|+.+++++.|++||++||+-
T Consensus       140 ~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         140 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             hhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            3456666666667777777777777777777777777654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0083  Score=45.05  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=33.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.++..||..+.++|+.+++|+.|++|+++||+.
T Consensus       106 ~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1         106 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc
Confidence            5668888888888888888888888888888888888873

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.94  E-value=0.0054  Score=44.53  Aligned_cols=40  Identities=15%  Similarity=-0.028  Sum_probs=37.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ..+|.++.+++..|..+..+|+-+++++.|++|+++||.-
T Consensus       270 ~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~  309 (334)
T d1dcea1         270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  309 (334)
T ss_dssp             TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence            6788999999999999999999999999999999999953

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0087  Score=42.04  Aligned_cols=46  Identities=11%  Similarity=0.197  Sum_probs=32.9

Q ss_pred             cccccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       109 giWd~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ..++..+  ..+|.++.++...|..++.+|+.+.+++.|++|++++|.
T Consensus        40 ~~~~~al--~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   85 (323)
T d1fcha_          40 LLFEAAV--QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD   85 (323)
T ss_dssp             HHHHHHH--HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHH--HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc
Confidence            3444445  556777777777777777777777777777777777775

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.86  E-value=0.0065  Score=41.23  Aligned_cols=38  Identities=21%  Similarity=0.322  Sum_probs=34.5

Q ss_pred             CchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       120 ~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ++.++..+.-+|..++++|+.+.+|++|++||++||..
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  110 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN  110 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence            46678888899999999999999999999999999964

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.48  E-value=0.0086  Score=40.94  Aligned_cols=43  Identities=9%  Similarity=-0.015  Sum_probs=36.3

Q ss_pred             CCCchhhHHHHHHHHHhhhhccc-----------cccHHHHHHHhhcCcccccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDV-----------VGSVAEFDKAIELDPRQKIS  160 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDV-----------eGSIaDFDkAIeLDPR~kpy  160 (194)
                      .-+|.++.++...|+.++.+|++           +.+++.|++|+++||...-|
T Consensus        69 ~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~  122 (145)
T d1zu2a1          69 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  122 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHH
Confidence            35699999999999999998864           66888999999999986543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.014  Score=39.53  Aligned_cols=35  Identities=6%  Similarity=0.066  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCcccc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~k  158 (194)
                      +.++...|+.++++||.+.+++.|++|+++||.-.
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence            45778899999999999999999999999999753

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.15  E-value=0.03  Score=37.88  Aligned_cols=35  Identities=11%  Similarity=0.177  Sum_probs=31.3

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ...++..+|+.++++|+.+.+|+++++|+++||.-
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~  100 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  100 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchh
Confidence            34566779999999999999999999999999975

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=93.09  E-value=0.031  Score=38.07  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      ....+.-+|+.++.+|+.+.+|+++++|+++||.-
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~   97 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN   97 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence            35567779999999999999999999999999964

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.04  E-value=0.023  Score=38.23  Aligned_cols=39  Identities=15%  Similarity=0.046  Sum_probs=34.6

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +.+.++.++..+|..++.+|+.+.+++++++|++++|+.
T Consensus        50 ~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1          50 HAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            345578889999999999999999999999999998864

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.06  Score=36.90  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       125 ~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      .++..+|..++++|+.+.++.++++||++||.-
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~   95 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNN   95 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence            456678999999999999999999999999963

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=90.39  E-value=0.074  Score=40.40  Aligned_cols=42  Identities=19%  Similarity=0.161  Sum_probs=38.5

Q ss_pred             CCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccccc
Q 029343          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (194)
Q Consensus       118 ~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~kp  159 (194)
                      ..+|.|+.+....|..+.++||.+.+++.|++|+++||...+
T Consensus        24 ~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~   65 (264)
T d1zbpa1          24 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   65 (264)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Confidence            467999999999999999999999999999999999997554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.15  Score=32.17  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      |.....-|...|++||.+.+|+-|.+|++++|.-
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~   38 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEG   38 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Confidence            3445678999999999999999999999998864

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.11  Score=34.42  Aligned_cols=39  Identities=15%  Similarity=0.072  Sum_probs=34.1

Q ss_pred             CCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCccc
Q 029343          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (194)
Q Consensus       119 n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR~  157 (194)
                      +.+..+.++...|..++++||.+++++.|.+|+++.++.
T Consensus       286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         286 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence            446677788889999999999999999999999998764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=85.36  E-value=0.3  Score=33.66  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=31.2

Q ss_pred             hhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       123 ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      ||.+++.-|+..|.++|.+.+++-|-+|.+++-.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~   34 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN   34 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH
Confidence            7899999999999999999999999999887643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.45  E-value=0.089  Score=37.85  Aligned_cols=43  Identities=16%  Similarity=-0.052  Sum_probs=34.8

Q ss_pred             ccccCCCCCchhhHHHHHHHHHhhhhccccccHHHHHHHhhcCcc
Q 029343          112 DALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (194)
Q Consensus       112 d~~~GG~n~p~ea~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDPR  156 (194)
                      +..+  ..+|.++.++..+|..+++.|+.+++++.++++++++|+
T Consensus       168 ~~~i--~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  210 (334)
T d1dcea1         168 DSLI--TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK  210 (334)
T ss_dssp             HTTT--TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH
T ss_pred             HHHH--HcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH
Confidence            4445  678889999999999999999988888888777777665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.23  E-value=0.6  Score=32.91  Aligned_cols=32  Identities=13%  Similarity=0.029  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHhhhhccccccHHHHHHHhhcCc
Q 029343          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (194)
Q Consensus       124 a~aaIRRGM~lFrqgDVeGSIaDFDkAIeLDP  155 (194)
                      -.+.+++|...+.+||.++.++.|++|+++.+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~r   42 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWR   42 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence            35678899999999999999999999999965