Citrus Sinensis ID: 029366


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
MSLESTLNRTKALDGVRGVHVVPHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVNSLFFTPS
ccccccccccccccccccEEEccccccHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccc
cccccccccccccccccEEEEEccccccHHHHccccccccccccccccHHHHHHHHHHHHHccccccccEccccccccHHHHHHHHHHccHHEHEcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHEEHEEEcccc
mslestlnrtkaldgvrgvhvvphspfalkeitehedyestckssfIGANQFLLMQRAWQqrpsclrpirgcihgDLHLLERVANVLTSlpfialglqtprknlnmTLYANSLVGVGVTSslyhssrgkLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASAlalpiqplMVSAVHTGMMEvnslfftps
mslestlnrtkaldgvrgvhvvpHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVNSLFFTPS
MSLESTLNRTKALDGVRGVHVVPHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVNSLFFTPS
************LDGVRGVHVVPHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVNSLFF***
***************VRGVHVVP******************************LMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVNSLFFTPS
********RTKALDGVRGVHVVPHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVNSLFFTPS
***********ALDGVRGVHVVPHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVNSLFFTPS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhoooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MSLESTLNRTKALDGVRGVHVVPHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVNSLFFTPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
224108313249 predicted protein [Populus trichocarpa] 0.958 0.746 0.780 8e-81
225424250248 PREDICTED: uncharacterized protein LOC10 0.953 0.745 0.754 2e-74
255570142262 conserved hypothetical protein [Ricinus 0.958 0.709 0.737 1e-70
60547591248 hypothetical protein At1g23110 [Arabidop 0.958 0.75 0.655 2e-67
79350419248 uncharacterized protein [Arabidopsis tha 0.958 0.75 0.655 2e-67
297838903244 hypothetical protein ARALYDRAFT_476225 [ 0.938 0.745 0.677 4e-67
357438753251 hypothetical protein MTR_1g031620 [Medic 0.958 0.741 0.677 8e-67
18409704244 uncharacterized protein [Arabidopsis tha 0.938 0.745 0.661 4e-66
21617924244 unknown [Arabidopsis thaliana] 0.938 0.745 0.655 1e-65
356571332251 PREDICTED: uncharacterized protein LOC10 0.958 0.741 0.656 2e-65
>gi|224108313|ref|XP_002314801.1| predicted protein [Populus trichocarpa] gi|222863841|gb|EEF00972.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  305 bits (780), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 146/187 (78%), Positives = 160/187 (85%), Gaps = 1/187 (0%)

Query: 1   MSLESTLNRTKALDGVRGVHVVPHSPFALKEITEHEDY-ESTCKSSFIGANQFLLMQRAW 59
           MS +ST N +K L+GV G+HVVPHSPFALKEI +  D+ +STC+SS  G NQ LLMQR W
Sbjct: 1   MSHQSTFNPSKTLEGVHGIHVVPHSPFALKEINQQGDFPQSTCESSGNGLNQLLLMQRVW 60

Query: 60  QQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVT 119
           QQRP CLRPI+GCIHGD HL E VANV+TSLPFIALG+Q PRKNLN  LYANSL+GVGV 
Sbjct: 61  QQRPGCLRPIQGCIHGDQHLAETVANVITSLPFIALGIQAPRKNLNTKLYANSLIGVGVA 120

Query: 120 SSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAV 179
           SSLYHSSRGKLRKYLRW DY MIATATVCLSRALR+ENPK LMAASA  LPIQPLMVSA+
Sbjct: 121 SSLYHSSRGKLRKYLRWFDYTMIATATVCLSRALRNENPKFLMAASAALLPIQPLMVSAI 180

Query: 180 HTGMMEV 186
           HTGMMEV
Sbjct: 181 HTGMMEV 187




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424250|ref|XP_002284485.1| PREDICTED: uncharacterized protein LOC100249059 [Vitis vinifera] gi|147801559|emb|CAN77015.1| hypothetical protein VITISV_036885 [Vitis vinifera] gi|297737691|emb|CBI26892.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255570142|ref|XP_002526033.1| conserved hypothetical protein [Ricinus communis] gi|223534680|gb|EEF36373.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|60547591|gb|AAX23759.1| hypothetical protein At1g23110 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79350419|ref|NP_173724.2| uncharacterized protein [Arabidopsis thaliana] gi|186478778|ref|NP_001117336.1| uncharacterized protein [Arabidopsis thaliana] gi|186478780|ref|NP_001117337.1| uncharacterized protein [Arabidopsis thaliana] gi|334182781|ref|NP_001185068.1| uncharacterized protein [Arabidopsis thaliana] gi|334182783|ref|NP_001185069.1| uncharacterized protein [Arabidopsis thaliana] gi|49823472|gb|AAT68719.1| hypothetical protein At1g23110 [Arabidopsis thaliana] gi|332192216|gb|AEE30337.1| uncharacterized protein [Arabidopsis thaliana] gi|332192217|gb|AEE30338.1| uncharacterized protein [Arabidopsis thaliana] gi|332192218|gb|AEE30339.1| uncharacterized protein [Arabidopsis thaliana] gi|332192219|gb|AEE30340.1| uncharacterized protein [Arabidopsis thaliana] gi|332192220|gb|AEE30341.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297838903|ref|XP_002887333.1| hypothetical protein ARALYDRAFT_476225 [Arabidopsis lyrata subsp. lyrata] gi|297333174|gb|EFH63592.1| hypothetical protein ARALYDRAFT_476225 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357438753|ref|XP_003589653.1| hypothetical protein MTR_1g031620 [Medicago truncatula] gi|217071696|gb|ACJ84208.1| unknown [Medicago truncatula] gi|355478701|gb|AES59904.1| hypothetical protein MTR_1g031620 [Medicago truncatula] gi|388519567|gb|AFK47845.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|18409704|ref|NP_565005.1| uncharacterized protein [Arabidopsis thaliana] gi|5902404|gb|AAD55506.1|AC008148_16 Unknown protein [Arabidopsis thaliana] gi|15293127|gb|AAK93674.1| unknown protein [Arabidopsis thaliana] gi|19310637|gb|AAL85049.1| unknown protein [Arabidopsis thaliana] gi|332197016|gb|AEE35137.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21617924|gb|AAM66974.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356571332|ref|XP_003553832.1| PREDICTED: uncharacterized protein LOC100781322 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
TAIR|locus:2201215248 AT1G23110 "AT1G23110" [Arabido 0.958 0.75 0.655 1.4e-62
TAIR|locus:2013935244 AT1G70900 "AT1G70900" [Arabido 0.938 0.745 0.661 2.7e-61
TAIR|locus:2201215 AT1G23110 "AT1G23110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 122/186 (65%), Positives = 146/186 (78%)

Query:     1 MSLESTLNRTKALDGVRGVHVVPHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQ 60
             MSL++    + AL+G+ GVHV  HSPF+ ++ T+  D+++  KSS + +NQ L ++R WQ
Sbjct:     1 MSLQNVSKSSNALEGIHGVHVTSHSPFSFEKTTQVSDFQTNTKSSVMESNQRLSIERFWQ 60

Query:    61 QRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTS 120
             QRP CLRPI   I GD  +LE  ANV TSLPFI LG+Q PRKNLN  +YANSL+GVG+ S
Sbjct:    61 QRPPCLRPICCSIRGDQSVLETAANVATSLPFIFLGMQAPRKNLNTKVYANSLIGVGIAS 120

Query:   121 SLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVH 180
             SLYH+SRGKLRKYLRW DY MIAT T+CLSRALR+ENPK LMAASAL LP QPLMVSAVH
Sbjct:   121 SLYHASRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFLMAASALVLPFQPLMVSAVH 180

Query:   181 TGMMEV 186
             TGMMEV
Sbjct:   181 TGMMEV 186




GO:0003674 "molecular_function" evidence=ND
TAIR|locus:2013935 AT1G70900 "AT1G70900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 194
PRK15087219 hemolysin; Provisional 99.5
COG1272226 Predicted membrane protein, hemolysin III homolog 99.46
TIGR01065204 hlyIII channel protein, hemolysin III family. This 99.21
PF03006222 HlyIII: Haemolysin-III related; InterPro: IPR00425 98.78
KOG4243298 consensus Macrophage maturation-associated protein 97.95
PF05875 262 Ceramidase: Ceramidase; InterPro: IPR008901 This e 94.39
KOG0748 286 consensus Predicted membrane proteins, contain hem 90.78
>PRK15087 hemolysin; Provisional Back     alignment and domain information
Probab=99.50  E-value=3e-14  Score=120.35  Aligned_cols=69  Identities=22%  Similarity=0.314  Sum_probs=57.4

Q ss_pred             CcchhhHHhhhhhhHHHHHhh-------------cC-CcchhHHHHHHHHHHHHHHHHHhhhccCC-hhHHHHHHHhhhH
Q 029366           76 DLHLLERVANVLTSLPFIALG-------------LQ-TPRKNLNMTLYANSLVGVGVTSSLYHSSR-GKLRKYLRWADYA  140 (194)
Q Consensus        76 dyS~~EEiANavTH~~giAlg-------------~~-~~~kivs~sIYg~SLIlLy~ASTLYHa~~-gr~K~~LRrlDHa  140 (194)
                      .|++.||.+|++||++++.++             .. +...+++..+|++|++++|++||+||..+ ++.|+++||+||+
T Consensus        10 ~~~~~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~   89 (219)
T PRK15087         10 GYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHC   89 (219)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHH
Confidence            388999999999997663211             01 34577899999999999999999999985 8899999999999


Q ss_pred             HHHh
Q 029366          141 MIAT  144 (194)
Q Consensus       141 AIA~  144 (194)
                      +|-.
T Consensus        90 ~I~l   93 (219)
T PRK15087         90 AIYL   93 (219)
T ss_pred             HHHH
Confidence            9853



>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only] Back     alignment and domain information
>TIGR01065 hlyIII channel protein, hemolysin III family Back     alignment and domain information
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins Back     alignment and domain information
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms] Back     alignment and domain information
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases Back     alignment and domain information
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00