Citrus Sinensis ID: 029366
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 194 | ||||||
| 224108313 | 249 | predicted protein [Populus trichocarpa] | 0.958 | 0.746 | 0.780 | 8e-81 | |
| 225424250 | 248 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.745 | 0.754 | 2e-74 | |
| 255570142 | 262 | conserved hypothetical protein [Ricinus | 0.958 | 0.709 | 0.737 | 1e-70 | |
| 60547591 | 248 | hypothetical protein At1g23110 [Arabidop | 0.958 | 0.75 | 0.655 | 2e-67 | |
| 79350419 | 248 | uncharacterized protein [Arabidopsis tha | 0.958 | 0.75 | 0.655 | 2e-67 | |
| 297838903 | 244 | hypothetical protein ARALYDRAFT_476225 [ | 0.938 | 0.745 | 0.677 | 4e-67 | |
| 357438753 | 251 | hypothetical protein MTR_1g031620 [Medic | 0.958 | 0.741 | 0.677 | 8e-67 | |
| 18409704 | 244 | uncharacterized protein [Arabidopsis tha | 0.938 | 0.745 | 0.661 | 4e-66 | |
| 21617924 | 244 | unknown [Arabidopsis thaliana] | 0.938 | 0.745 | 0.655 | 1e-65 | |
| 356571332 | 251 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.741 | 0.656 | 2e-65 |
| >gi|224108313|ref|XP_002314801.1| predicted protein [Populus trichocarpa] gi|222863841|gb|EEF00972.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 305 bits (780), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 146/187 (78%), Positives = 160/187 (85%), Gaps = 1/187 (0%)
Query: 1 MSLESTLNRTKALDGVRGVHVVPHSPFALKEITEHEDY-ESTCKSSFIGANQFLLMQRAW 59
MS +ST N +K L+GV G+HVVPHSPFALKEI + D+ +STC+SS G NQ LLMQR W
Sbjct: 1 MSHQSTFNPSKTLEGVHGIHVVPHSPFALKEINQQGDFPQSTCESSGNGLNQLLLMQRVW 60
Query: 60 QQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVT 119
QQRP CLRPI+GCIHGD HL E VANV+TSLPFIALG+Q PRKNLN LYANSL+GVGV
Sbjct: 61 QQRPGCLRPIQGCIHGDQHLAETVANVITSLPFIALGIQAPRKNLNTKLYANSLIGVGVA 120
Query: 120 SSLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAV 179
SSLYHSSRGKLRKYLRW DY MIATATVCLSRALR+ENPK LMAASA LPIQPLMVSA+
Sbjct: 121 SSLYHSSRGKLRKYLRWFDYTMIATATVCLSRALRNENPKFLMAASAALLPIQPLMVSAI 180
Query: 180 HTGMMEV 186
HTGMMEV
Sbjct: 181 HTGMMEV 187
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424250|ref|XP_002284485.1| PREDICTED: uncharacterized protein LOC100249059 [Vitis vinifera] gi|147801559|emb|CAN77015.1| hypothetical protein VITISV_036885 [Vitis vinifera] gi|297737691|emb|CBI26892.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255570142|ref|XP_002526033.1| conserved hypothetical protein [Ricinus communis] gi|223534680|gb|EEF36373.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|60547591|gb|AAX23759.1| hypothetical protein At1g23110 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|79350419|ref|NP_173724.2| uncharacterized protein [Arabidopsis thaliana] gi|186478778|ref|NP_001117336.1| uncharacterized protein [Arabidopsis thaliana] gi|186478780|ref|NP_001117337.1| uncharacterized protein [Arabidopsis thaliana] gi|334182781|ref|NP_001185068.1| uncharacterized protein [Arabidopsis thaliana] gi|334182783|ref|NP_001185069.1| uncharacterized protein [Arabidopsis thaliana] gi|49823472|gb|AAT68719.1| hypothetical protein At1g23110 [Arabidopsis thaliana] gi|332192216|gb|AEE30337.1| uncharacterized protein [Arabidopsis thaliana] gi|332192217|gb|AEE30338.1| uncharacterized protein [Arabidopsis thaliana] gi|332192218|gb|AEE30339.1| uncharacterized protein [Arabidopsis thaliana] gi|332192219|gb|AEE30340.1| uncharacterized protein [Arabidopsis thaliana] gi|332192220|gb|AEE30341.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297838903|ref|XP_002887333.1| hypothetical protein ARALYDRAFT_476225 [Arabidopsis lyrata subsp. lyrata] gi|297333174|gb|EFH63592.1| hypothetical protein ARALYDRAFT_476225 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|357438753|ref|XP_003589653.1| hypothetical protein MTR_1g031620 [Medicago truncatula] gi|217071696|gb|ACJ84208.1| unknown [Medicago truncatula] gi|355478701|gb|AES59904.1| hypothetical protein MTR_1g031620 [Medicago truncatula] gi|388519567|gb|AFK47845.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|18409704|ref|NP_565005.1| uncharacterized protein [Arabidopsis thaliana] gi|5902404|gb|AAD55506.1|AC008148_16 Unknown protein [Arabidopsis thaliana] gi|15293127|gb|AAK93674.1| unknown protein [Arabidopsis thaliana] gi|19310637|gb|AAL85049.1| unknown protein [Arabidopsis thaliana] gi|332197016|gb|AEE35137.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|21617924|gb|AAM66974.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356571332|ref|XP_003553832.1| PREDICTED: uncharacterized protein LOC100781322 [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 194 | ||||||
| TAIR|locus:2201215 | 248 | AT1G23110 "AT1G23110" [Arabido | 0.958 | 0.75 | 0.655 | 1.4e-62 | |
| TAIR|locus:2013935 | 244 | AT1G70900 "AT1G70900" [Arabido | 0.938 | 0.745 | 0.661 | 2.7e-61 |
| TAIR|locus:2201215 AT1G23110 "AT1G23110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 122/186 (65%), Positives = 146/186 (78%)
Query: 1 MSLESTLNRTKALDGVRGVHVVPHSPFALKEITEHEDYESTCKSSFIGANQFLLMQRAWQ 60
MSL++ + AL+G+ GVHV HSPF+ ++ T+ D+++ KSS + +NQ L ++R WQ
Sbjct: 1 MSLQNVSKSSNALEGIHGVHVTSHSPFSFEKTTQVSDFQTNTKSSVMESNQRLSIERFWQ 60
Query: 61 QRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTS 120
QRP CLRPI I GD +LE ANV TSLPFI LG+Q PRKNLN +YANSL+GVG+ S
Sbjct: 61 QRPPCLRPICCSIRGDQSVLETAANVATSLPFIFLGMQAPRKNLNTKVYANSLIGVGIAS 120
Query: 121 SLYHSSRGKLRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVH 180
SLYH+SRGKLRKYLRW DY MIAT T+CLSRALR+ENPK LMAASAL LP QPLMVSAVH
Sbjct: 121 SLYHASRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFLMAASALVLPFQPLMVSAVH 180
Query: 181 TGMMEV 186
TGMMEV
Sbjct: 181 TGMMEV 186
|
|
| TAIR|locus:2013935 AT1G70900 "AT1G70900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 194 | |||
| PRK15087 | 219 | hemolysin; Provisional | 99.5 | |
| COG1272 | 226 | Predicted membrane protein, hemolysin III homolog | 99.46 | |
| TIGR01065 | 204 | hlyIII channel protein, hemolysin III family. This | 99.21 | |
| PF03006 | 222 | HlyIII: Haemolysin-III related; InterPro: IPR00425 | 98.78 | |
| KOG4243 | 298 | consensus Macrophage maturation-associated protein | 97.95 | |
| PF05875 | 262 | Ceramidase: Ceramidase; InterPro: IPR008901 This e | 94.39 | |
| KOG0748 | 286 | consensus Predicted membrane proteins, contain hem | 90.78 |
| >PRK15087 hemolysin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-14 Score=120.35 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=57.4
Q ss_pred CcchhhHHhhhhhhHHHHHhh-------------cC-CcchhHHHHHHHHHHHHHHHHHhhhccCC-hhHHHHHHHhhhH
Q 029366 76 DLHLLERVANVLTSLPFIALG-------------LQ-TPRKNLNMTLYANSLVGVGVTSSLYHSSR-GKLRKYLRWADYA 140 (194)
Q Consensus 76 dyS~~EEiANavTH~~giAlg-------------~~-~~~kivs~sIYg~SLIlLy~ASTLYHa~~-gr~K~~LRrlDHa 140 (194)
.|++.||.+|++||++++.++ .. +...+++..+|++|++++|++||+||..+ ++.|+++||+||+
T Consensus 10 ~~~~~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~ 89 (219)
T PRK15087 10 GYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHC 89 (219)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHH
Confidence 388999999999997663211 01 34577899999999999999999999985 8899999999999
Q ss_pred HHHh
Q 029366 141 MIAT 144 (194)
Q Consensus 141 AIA~ 144 (194)
+|-.
T Consensus 90 ~I~l 93 (219)
T PRK15087 90 AIYL 93 (219)
T ss_pred HHHH
Confidence 9853
|
|
| >COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01065 hlyIII channel protein, hemolysin III family | Back alignment and domain information |
|---|
| >PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins | Back alignment and domain information |
|---|
| >KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases | Back alignment and domain information |
|---|
| >KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00