Citrus Sinensis ID: 029370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGSPRD
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
megpgadaasavapiaKWRSDFSRMFQYyldrstphplqRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGflspkidpefealdgaslptkgsdefrpfirrlpefKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYryipfsfgkqkytgkrsaastsgsprd
Flexible Loop (DISEMBL)
megpgadaasavapiakWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEALDgaslptkgsdefrPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPfsfgkqkytgkrsaastsgsprd
Low Complexity Region (SEG)
MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYglgiyilnlligflSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGSPRD
Disordered region (IsUnstruct)
***********VAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGA*******DEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ*****************
Disordered Region (DISOPRED)
****************KWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDP**********************RRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSF********************
Disordered Region (DISEMBL)
***********VAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ*****************
Disordered Region (DISPRO)
***********VAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEA**GASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFG*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGSPRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
O48671	195	Protein RER1B OS=Arabidop	yes	no	0.994	0.989	0.683	1e-79
O48670	191	Protein RER1A OS=Arabidop	no	no	0.974	0.989	0.684	1e-74
Q9ZPV7	221	Protein RER1D OS=Arabidop	no	no	0.896	0.787	0.657	3e-64
Q9ZWI7	212	Protein RER1C OS=Arabidop	no	no	0.871	0.797	0.605	7e-59
A5PJ65	196	Protein RER1 OS=Bos tauru	yes	no	0.979	0.969	0.551	1e-55
Q498C8	196	Protein RER1 OS=Rattus no	yes	no	0.979	0.969	0.546	1e-55
Q9CQU3	196	Protein RER1 OS=Mus muscu	yes	no	0.979	0.969	0.546	1e-55
Q5R5U4	196	Protein RER1 OS=Pongo abe	yes	no	0.979	0.969	0.541	5e-55
O15258	196	Protein RER1 OS=Homo sapi	yes	no	0.979	0.969	0.541	5e-55
Q5ZHM5	196	Protein RER1 OS=Gallus ga	yes	no	0.979	0.969	0.546	9e-55

>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 162/193 (83%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           MEG G D+ S   P+ K   +  R++QYYLD++TPH   RWIGTL    IY LRVY + G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FYI++YGLGIY+LNLLIGFLSP +DPE E  DGA+LPT+GSDEF+PFIRRLPEFKFWY++
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
           TKAFC+AFLMTFFS+FDVPVFWPILLCYW+VLFVLTM+RQ+ HMIK++YIPFS GKQKY+
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query: 181 GKRSAASTSGSPR 193
           G++S+A++ G  R
Sbjct: 181 GRKSSANSGGGSR 193

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1

 Score =  278 bits (712), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/190 (68%), Positives = 157/190 (82%), Gaps = 1/190 (0%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           M+  G D+ S   P+ +   +  R++Q+YLD++TPH   RWIGTL  A IY LRVY +QG
Sbjct: 1   MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEAL-DGASLPTKGSDEFRPFIRRLPEFKFWYA 119
           FYI+ YGLGIY+LNLLIGFLSP +DPE   + DG SLPT+GSDEF+PFIRRLPEFKFWY+
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 120 ITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKY 179
           +TKAFC+AFLMTFFS+FDVPVFWPILLCYWIVLFVLTM+RQ+ HMIKY+YIPFSFGKQKY
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query: 180 TGKRSAASTS 189
            G+ S+ S +
Sbjct: 181 GGRSSSGSRA 190

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/175 (65%), Positives = 139/175 (79%), Gaps = 1/175 (0%)

Query: 3   GPGADAASAVA-PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGF 61
           G   +A + VA P+AKWR +FS+ FQ YLDRS P+ ++RW+ TL AA IY+ RVY V G+
Sbjct: 6   GSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGY 65

Query: 62  YIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAIT 121
           ++++YGL  YILNLLIGFLSPK+DPE EALD  SLP   SDE++PF+RRLPEFKFWYA T
Sbjct: 66  FVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAAT 125

Query: 122 KAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGK 176
           KAF VAF+MTFFS  DVPVFWPILLCYW+VL+ LTMKR ++HM KYRY PF   K
Sbjct: 126 KAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1

 Score =  226 bits (576), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 133/170 (78%), Gaps = 1/170 (0%)

Query: 22  FSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLS 81
           FS+  Q+ LD++ PH L RWI  L    IY++RVY V+GFYI+TY +GIY+LNL+I FLS
Sbjct: 44  FSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLS 103

Query: 82  PKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVF 141
           P+ DPE     G SLPT+ SDE+RPF+RRLPEFKFW +I +AF + F+MTFF +FDVPVF
Sbjct: 104 PQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVF 163

Query: 142 WPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGS 191
           WPILL YW++LF LTM++Q+ HMIKYRY+PFSFGK++Y GK+ A + S  
Sbjct: 164 WPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPAPTESSE 212

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2

 Score =  216 bits (549), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/194 (55%), Positives = 136/194 (70%), Gaps = 4/194 (2%)

Query: 2   EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
           EG     +    P   +R  +   +++Q +LD+STPH   RW+ TL  + IY++RVY +Q
Sbjct: 3   EGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQ 62

Query: 60  GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
           G+YIVTY LGIY LNL I FLSPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63  GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122

Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
           +A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

Query: 178 KYTGKRSAASTSGS 191
            Y GK  A     S
Sbjct: 183 TYKGKEDAGKAFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Bos taurus (taxid: 9913)

>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 2   EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
           EG     +    P   +R  S   +++Q +LD+STP+   RW+ TL  + +Y++RVY +Q
Sbjct: 3   EGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQ 62

Query: 60  GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
           G+YIVTY LGIY LNL I FLSPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63  GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122

Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
           +A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

Query: 178 KYTGKRSAASTSGS 191
           +Y GK     T  S
Sbjct: 183 RYKGKEDVGKTFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 2   EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
           EG     +    P   +R  S   +++Q +LD+STP+   RW+ TL  + +Y++RVY +Q
Sbjct: 3   EGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQ 62

Query: 60  GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
           G+YIVTY LGIY LNL I FLSPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63  GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122

Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
           +A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

Query: 178 KYTGKRSAASTSGS 191
           +Y GK     T  S
Sbjct: 183 RYKGKEDVGKTFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Mus musculus (taxid: 10090)

>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1

 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 2   EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
           EG     +    P   +R  +   +++Q +LD+STP+   RW+ TL  + +Y++RVY +Q
Sbjct: 3   EGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQ 62

Query: 60  GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
           G+YIVTY LGIY LNL I FLSPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63  GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122

Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
           +A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

Query: 178 KYTGKRSAASTSGS 191
           +Y GK  A     S
Sbjct: 183 RYRGKEDAGKAFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Pongo abelii (taxid: 9601)

>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1

 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 2   EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
           EG     +    P   +R  +   +++Q +LD+STP+   RW+ TL  + +Y++RVY +Q
Sbjct: 3   EGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQ 62

Query: 60  GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
           G+YIVTY LGIY LNL I FLSPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW
Sbjct: 63  GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFW 122

Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
           +A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

Query: 178 KYTGKRSAASTSGS 191
           +Y GK  A     S
Sbjct: 183 RYRGKEDAGKAFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Homo sapiens (taxid: 9606)

>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1

 Score =  213 bits (541), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 106/194 (54%), Positives = 136/194 (70%), Gaps = 4/194 (2%)

Query: 2   EGPGADAASAVAPIAKWR--SDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQ 59
           EG     +    P   +R  +   +++Q +LD+STP+   RWI TL  + IY++RVY +Q
Sbjct: 3   EGDSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQ 62

Query: 60  GFYIVTYGLGIYILNLLIGFLSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFW 117
           G+YIVTY LGIY LNL I FLSPK+DP    ++ DG SLPT+ ++EFRPFIRRLPEFKFW
Sbjct: 63  GWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFW 122

Query: 118 YAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQ 177
           ++ TK   VA   TFF  F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+
Sbjct: 123 HSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKR 182

Query: 178 KYTGKRSAASTSGS 191
           KY GK     T  S
Sbjct: 183 KYKGKEDVGKTFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
225458241	194	PREDICTED: protein RER1B [Vitis vinifera	1.0	1.0	0.824	3e-93
224062115	194	predicted protein [Populus trichocarpa]	1.0	1.0	0.824	6e-93
449469973	194	PREDICTED: protein RER1B-like [Cucumis s	1.0	1.0	0.840	4e-91
224085686	194	predicted protein [Populus trichocarpa]	1.0	1.0	0.804	2e-90
255538690	194	rer1 protein, putative [Ricinus communis	0.922	0.922	0.826	3e-86
116791147	192	unknown [Picea sitchensis]	0.989	1.0	0.757	2e-85
225428428	194	PREDICTED: protein RER1B [Vitis vinifera	1.0	1.0	0.737	1e-83
297735130	244	unnamed protein product [Vitis vinifera]	1.0	0.795	0.752	2e-83
255561096	192	rer1 protein, putative [Ricinus communis	0.953	0.963	0.783	2e-83
225430712	194	PREDICTED: protein RER1B-like [Vitis vin	1.0	1.0	0.752	3e-83

>gi|225458241|ref|XP_002282050.1| PREDICTED: protein RER1B [Vitis vinifera] gi|302142515|emb|CBI19718.3| unnamed protein product [Vitis vinifera]

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 160/194 (82%), Positives = 180/194 (92%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           ME    DAAS VAP+AKW++DFSR FQ+YLD+STPHP+ RW+GTLA A+IY+LRVY VQG
Sbjct: 1   MERVEGDAASTVAPLAKWKNDFSRAFQHYLDKSTPHPVHRWLGTLAVAAIYVLRVYYVQG 60

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FYIV+YGLGIYILNLLIGFLSPK+DPE E LDGASLPTKGSDEF+PFIRRLPEFKFWY+I
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPKVDPELEVLDGASLPTKGSDEFKPFIRRLPEFKFWYSI 120

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
           TKAFCVAFLMTFFS+FDVPVFWPILLCYWIVLFVLTMKRQ+MHMIKY+Y+PFS GKQ+YT
Sbjct: 121 TKAFCVAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQIMHMIKYKYVPFSIGKQRYT 180

Query: 181 GKRSAASTSGSPRD 194
           GK+SAAS+ G PRD
Sbjct: 181 GKKSAASSRGLPRD 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062115|ref|XP_002300762.1| predicted protein [Populus trichocarpa] gi|222842488|gb|EEE80035.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 160/194 (82%), Positives = 178/194 (91%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           MEG G DAA+ V P+AKWR+DFSR FQYYLDRSTPHP+QRW+GTLA A+IY+LRV+  QG
Sbjct: 1   MEGNGGDAANVVGPVAKWRNDFSRAFQYYLDRSTPHPMQRWLGTLAVAAIYVLRVFYAQG 60

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FYIV+YGLGIYILNLLIGFLSPK+DPE E LDGASLPTKGSDEF+PFIRRLPEFKFWYAI
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPKVDPELEVLDGASLPTKGSDEFKPFIRRLPEFKFWYAI 120

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
           TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQ+MHM+KY+Y+PFS GKQ+Y 
Sbjct: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQLMHMMKYKYVPFSLGKQRYG 180

Query: 181 GKRSAASTSGSPRD 194
            K+S AS+SG  RD
Sbjct: 181 KKKSDASSSGLMRD 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469973|ref|XP_004152693.1| PREDICTED: protein RER1B-like [Cucumis sativus] gi|449496096|ref|XP_004160038.1| PREDICTED: protein RER1B-like [Cucumis sativus]

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 163/194 (84%), Positives = 182/194 (93%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           MEG G D ASAVAP+AKWR+DFSR FQYYLDRSTPHP+QRW+GTL  A+IY+LRV+ VQG
Sbjct: 1   MEGVGGDTASAVAPLAKWRNDFSRAFQYYLDRSTPHPVQRWLGTLLVAAIYVLRVFYVQG 60

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FY+V+YGLGIYILNLLIGFLSPK+DPE + LDGASLPTKGSDEF+PFIRRLPEFKFWYAI
Sbjct: 61  FYVVSYGLGIYILNLLIGFLSPKVDPELDVLDGASLPTKGSDEFKPFIRRLPEFKFWYAI 120

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
           TKAFC+AFLMTFFS+FDVPVFWPILLCYWIVLFVLTMKRQ+MHMIKY+YIPFS GKQ+YT
Sbjct: 121 TKAFCIAFLMTFFSLFDVPVFWPILLCYWIVLFVLTMKRQIMHMIKYKYIPFSIGKQRYT 180

Query: 181 GKRSAASTSGSPRD 194
           GKRS+AS+SG  RD
Sbjct: 181 GKRSSASSSGVSRD 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085686|ref|XP_002307664.1| predicted protein [Populus trichocarpa] gi|222857113|gb|EEE94660.1| predicted protein [Populus trichocarpa]

 Score =  336 bits (862), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/194 (80%), Positives = 176/194 (90%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           MEG G DAA+ VAP+AKWR+DFSR FQ+YLDRSTPHP +RW+GTLA A++Y+LR Y VQG
Sbjct: 1   MEGNGGDAANVVAPLAKWRNDFSRAFQFYLDRSTPHPTERWLGTLAVAAVYVLRAYFVQG 60

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FYI++YGLGIYILNLLIGFLSPK+DPE E  D ASLPTKGSDEF+PFIRRLPEFKFWYAI
Sbjct: 61  FYIISYGLGIYILNLLIGFLSPKVDPELEVSDDASLPTKGSDEFKPFIRRLPEFKFWYAI 120

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
           TKAFCVAFLMTFFS+FDVPVFWPILLCYWIVLFVLTMKRQ+MHMIKY+Y+PFS GKQ+Y 
Sbjct: 121 TKAFCVAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQIMHMIKYKYVPFSRGKQRYG 180

Query: 181 GKRSAASTSGSPRD 194
            K+S AS+SG  RD
Sbjct: 181 RKKSGASSSGLMRD 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538690|ref|XP_002510410.1| rer1 protein, putative [Ricinus communis] gi|223551111|gb|EEF52597.1| rer1 protein, putative [Ricinus communis]

 Score =  322 bits (826), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 148/179 (82%), Positives = 167/179 (93%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           MEG G D  S VAP AKWR++FSR FQYYLDRSTP+P++RW+GTLAA++IY+LRVY  QG
Sbjct: 1   MEGAGGDTDSIVAPFAKWRNEFSRTFQYYLDRSTPYPMERWLGTLAASAIYMLRVYYAQG 60

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FYIV+YGLGIYILNLLIGFLSPK+DPE E LDGASLPTKGSDEF+PFIRRLPEFKFWY+I
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPKVDPELEVLDGASLPTKGSDEFKPFIRRLPEFKFWYSI 120

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKY 179
           TKAFCVAFLMTFFS+FDVPVFWPILLCYW+VLFVLTMKRQ+MHMIKY+Y+PFS GKQ+Y
Sbjct: 121 TKAFCVAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIMHMIKYKYVPFSVGKQRY 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116791147|gb|ABK25873.1| unknown [Picea sitchensis]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 147/194 (75%), Positives = 175/194 (90%), Gaps = 2/194 (1%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           MEG   D  S V  +A+WR+DFSR FQYYLD+STPHP+ RW+G+LAAA+IY+LRVY VQG
Sbjct: 1   MEGVTVDGGSPVG-LARWRNDFSRRFQYYLDKSTPHPVGRWLGSLAAATIYILRVYYVQG 59

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FYIV+YGLGIY+LNLLIGFLSP++DPE E +DGASLPTKGSDEF+PFIRRLPEFKFWY+I
Sbjct: 60  FYIVSYGLGIYVLNLLIGFLSPQVDPEMEGMDGASLPTKGSDEFKPFIRRLPEFKFWYSI 119

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
           TKAFC++F+MTFFS+FDVPVFWPILLCYW+VLFVLTMKRQ++HMIKY+Y+PFS GKQ+Y+
Sbjct: 120 TKAFCISFVMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQILHMIKYKYVPFSLGKQRYS 179

Query: 181 GKRSAASTSGSPRD 194
           GKRS    +GS RD
Sbjct: 180 GKRS-TDKAGSSRD 192

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428428|ref|XP_002283905.1| PREDICTED: protein RER1B [Vitis vinifera] gi|297744409|emb|CBI37671.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 143/194 (73%), Positives = 170/194 (87%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           MEG G    SAV+P+ +W++D SR+FQYYLD++TPHP+ RW+GTL  A+IY LRVY VQG
Sbjct: 1   MEGTGGGGPSAVSPVIQWKTDASRLFQYYLDKTTPHPVYRWVGTLVVAAIYALRVYYVQG 60

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FY+V+YGLGIY+LNLLIGFLSP +DPE E  + A LPTKGSDEF+PFIRRLPEFKFWY+I
Sbjct: 61  FYVVSYGLGIYLLNLLIGFLSPLVDPELETSNEALLPTKGSDEFKPFIRRLPEFKFWYSI 120

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
           TKAFCVAF++TFFS FDVPVFWPILLCYWIVLF+LTMKRQ++HMIKY+Y+PFS GKQKY 
Sbjct: 121 TKAFCVAFVLTFFSAFDVPVFWPILLCYWIVLFILTMKRQIVHMIKYKYVPFSMGKQKYG 180

Query: 181 GKRSAASTSGSPRD 194
           GK+S AS+SGS  D
Sbjct: 181 GKKSFASSSGSNMD 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735130|emb|CBI17492.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 146/194 (75%), Positives = 167/194 (86%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           ME  G D A A AP+AKW+SDFSR FQYYLDRS PH  +RW+GTL AASIY LRVY VQG
Sbjct: 51  MEENGGDFALAAAPLAKWKSDFSRAFQYYLDRSAPHIAERWLGTLVAASIYFLRVYYVQG 110

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FY+++YGLGIY+LNLLIGFLSPK+DPE EALDGASLPTK SDEF+PF+RRLPEFKFWY+I
Sbjct: 111 FYVISYGLGIYVLNLLIGFLSPKVDPELEALDGASLPTKDSDEFKPFVRRLPEFKFWYSI 170

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
           TKAF VAF +TFFS+ DVPVFWPILLCYWI LFVLTMKRQ++HMIKY+Y+PF  GK +YT
Sbjct: 171 TKAFVVAFGLTFFSMLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFDMGKMRYT 230

Query: 181 GKRSAASTSGSPRD 194
           GK+ +AS S   RD
Sbjct: 231 GKKPSASGSRLARD 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561096|ref|XP_002521560.1| rer1 protein, putative [Ricinus communis] gi|223539238|gb|EEF40831.1| rer1 protein, putative [Ricinus communis]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 145/185 (78%), Positives = 166/185 (89%)

Query: 5   GADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIV 64
           G    S  AP+AKWRS+ SR FQYYLDRSTPH ++RW+GTLA   IY+LRVY V+GFY+V
Sbjct: 4   GVGNESQEAPLAKWRSEMSRAFQYYLDRSTPHTMRRWLGTLAVGLIYVLRVYYVEGFYVV 63

Query: 65  TYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAF 124
           +YGLGIYILNLLIGFLSPK DPE EALDGASLPTKGSDE++PFIRRLPEFKFWYAITKAF
Sbjct: 64  SYGLGIYILNLLIGFLSPKDDPELEALDGASLPTKGSDEYKPFIRRLPEFKFWYAITKAF 123

Query: 125 CVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRS 184
            VAF++TFFS+ DVPVFWPILLCYWIVLFVLTMKRQ++HMIKY+Y+PFS GKQ+YTGK S
Sbjct: 124 VVAFILTFFSVLDVPVFWPILLCYWIVLFVLTMKRQILHMIKYKYVPFSSGKQRYTGKNS 183

Query: 185 AASTS 189
           +AS+S
Sbjct: 184 SASSS 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430712|ref|XP_002265209.1| PREDICTED: protein RER1B-like [Vitis vinifera]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 146/194 (75%), Positives = 167/194 (86%)

Query: 1   MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
           ME  G D A A AP+AKW+SDFSR FQYYLDRS PH  +RW+GTL AASIY LRVY VQG
Sbjct: 1   MEENGGDFALAAAPLAKWKSDFSRAFQYYLDRSAPHIAERWLGTLVAASIYFLRVYYVQG 60

Query: 61  FYIVTYGLGIYILNLLIGFLSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
           FY+++YGLGIY+LNLLIGFLSPK+DPE EALDGASLPTK SDEF+PF+RRLPEFKFWY+I
Sbjct: 61  FYVISYGLGIYVLNLLIGFLSPKVDPELEALDGASLPTKDSDEFKPFVRRLPEFKFWYSI 120

Query: 121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
           TKAF VAF +TFFS+ DVPVFWPILLCYWI LFVLTMKRQ++HMIKY+Y+PF  GK +YT
Sbjct: 121 TKAFVVAFGLTFFSMLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFDMGKMRYT 180

Query: 181 GKRSAASTSGSPRD 194
           GK+ +AS S   RD
Sbjct: 181 GKKPSASGSRLARD 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2049354	195	RER1B "AT2G21600" [Arabidopsis	0.994	0.989	0.616	1.1e-66
TAIR|locus:2136373	191	ATRER1A "AT4G39220" [Arabidops	0.963	0.979	0.622	2.6e-63
TAIR|locus:2062185	221	AT2G18240 "AT2G18240" [Arabido	0.891	0.782	0.590	2.1e-54
TAIR|locus:2058583	212	ATRER1C1 "AT2G23310" [Arabidop	0.943	0.863	0.521	3.1e-51
MGI|MGI:1915080	196	Rer1 "RER1 retention in endopl	0.912	0.903	0.513	6e-48
RGD|1306324	196	Rer1 "RER1 retention in endopl	0.912	0.903	0.513	6e-48
UNIPROTKB|A5PJ65	196	RER1 "Protein RER1" [Bos tauru	0.865	0.857	0.547	7.7e-48
UNIPROTKB|I3LJC8	196	LOC100736849 "Uncharacterized	0.850	0.841	0.544	1.6e-47
UNIPROTKB|O15258	196	RER1 "Protein RER1" [Homo sapi	0.865	0.857	0.535	2e-47
UNIPROTKB|Q5ZHM5	196	RER1 "Protein RER1" [Gallus ga	0.865	0.857	0.541	3.3e-47

TAIR|locus:2049354 RER1B "AT2G21600" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 119/193 (61%), Positives = 148/193 (76%)

Query:     1 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
             MEG G D+ S   P+ K   +  R++QYYLD++TPH   RWIGTL    IY LRVY + G
Sbjct:     1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query:    61 FYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
             FYI++Y              SP +DPE E  DGA+LPT+GSDEF+PFIRRLPEFKFWY++
Sbjct:    61 FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query:   121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYT 180
             TKAFC+AFLMTFFS+FDVPVFWPILLCYW+VLFVLTM+RQ+ HMIK++YIPFS GKQKY+
Sbjct:   121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query:   181 GKRSAASTSGSPR 193
             G++S+A++ G  R
Sbjct:   181 GRKSSANSGGGSR 193

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2136373 ATRER1A "AT4G39220" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 117/188 (62%), Positives = 142/188 (75%)

Query:     1 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
             M+  G D+ S   P+ +   +  R++Q+YLD++TPH   RWIGTL  A IY LRVY +QG
Sbjct:     1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query:    61 FYIVTYXXXXXXXXXXXXXXSPKIDPEFEAL-DGASLPTKGSDEFRPFIRRLPEFKFWYA 119
             FYI+ Y              SP +DPE   + DG SLPT+GSDEF+PFIRRLPEFKFWY+
Sbjct:    61 FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query:   120 ITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKY 179
             +TKAFC+AFLMTFFS+FDVPVFWPILLCYWIVLFVLTM+RQ+ HMIKY+YIPFSFGKQKY
Sbjct:   121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query:   180 TGKRSAAS 187
              G+ S+ S
Sbjct:   181 GGRSSSGS 188

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2062185 AT2G18240 "AT2G18240" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 104/176 (59%), Positives = 129/176 (73%)

Query:     4 PGAD--AASAVA-PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG 60
             PG++  A + VA P+AKWR +FS+ FQ YLDRS P+ ++RW+ TL AA IY+ RVY V G
Sbjct:     5 PGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYG 64

Query:    61 FYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAI 120
             +++++Y              SPK+DPE EALD  SLP   SDE++PF+RRLPEFKFWYA 
Sbjct:    65 YFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAA 124

Query:   121 TKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGK 176
             TKAF VAF+MTFFS  DVPVFWPILLCYW+VL+ LTMKR ++HM KYRY PF   K
Sbjct:   125 TKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISS

TAIR|locus:2058583 ATRER1C1 "AT2G23310" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 96/184 (52%), Positives = 128/184 (69%)

Query:     6 ADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVT 65
             +D++S    + +    FS+  Q+ LD++ PH L RWI  L    IY++RVY V+GFYI+T
Sbjct:    28 SDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIIT 87

Query:    66 YXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFC 125
             Y              SP+ DPE     G SLPT+ SDE+RPF+RRLPEFKFW +I +AF 
Sbjct:    88 YAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFI 147

Query:   126 VAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSA 185
             + F+MTFF +FDVPVFWPILL YW++LF LTM++Q+ HMIKYRY+PFSFGK++Y GK+ A
Sbjct:   148 IGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPA 206

Query:   186 ASTS 189
              + S
Sbjct:   207 PTES 210

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0045185 "maintenance of protein location" evidence=IGI

MGI|MGI:1915080 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 92/179 (51%), Positives = 124/179 (69%)

Query:    15 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXX 74
             + ++ S   +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY        
Sbjct:    18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLN 77

Query:    75 XXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTF 132
                   SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TF
Sbjct:    78 LFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTF 137

Query:   133 FSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGS 191
             F  F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK++Y GK     T  S
Sbjct:   138 FEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGKEDVGKTFAS 196

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=ISO

RGD|1306324 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 92/179 (51%), Positives = 124/179 (69%)

Query:    15 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXX 74
             + ++ S   +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY        
Sbjct:    18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLN 77

Query:    75 XXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTF 132
                   SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TF
Sbjct:    78 LFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTF 137

Query:   133 FSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGS 191
             F  F+VPVFWPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK++Y GK     T  S
Sbjct:   138 FEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGKEDVGKTFAS 196

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA;ISO

GO:0030173 "integral to Golgi membrane" evidence=IEA;ISO

UNIPROTKB|A5PJ65 RER1 "Protein RER1" [Bos taurus (taxid:9913)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/170 (54%), Positives = 119/170 (70%)

Query:    24 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPK 83
             +++Q +LD+STPH   RW+ TL  + IY++RVY +QG+YIVTY              SPK
Sbjct:    27 QIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPK 86

Query:    84 IDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVF 141
             +DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TFF  F+VPVF
Sbjct:    87 VDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVF 146

Query:   142 WPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGS 191
             WPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+ Y GK  A     S
Sbjct:   147 WPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGKEDAGKAFAS 196

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

UNIPROTKB|I3LJC8 LOC100736849 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 91/167 (54%), Positives = 120/167 (71%)

Query:    24 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPK 83
             +++Q +LDRSTP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK
Sbjct:    27 QIYQSWLDRSTPYTAVRWVVTLGLSFVYMVRVYLLQGWYIVTYALGIYHLNLFIAFLSPK 86

Query:    84 IDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVF 141
             +DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TFF  F+VPVF
Sbjct:    87 VDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGVLVAMVCTFFEAFNVPVF 146

Query:   142 WPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAAST 188
             WPIL+ Y+++LF +TMKRQ+ HMIKYRYIPF+ GK+ Y GK  +A T
Sbjct:   147 WPILVMYFVMLFCITMKRQIKHMIKYRYIPFTHGKRTYRGKEDSAKT 193

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O15258 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 91/170 (53%), Positives = 120/170 (70%)

Query:    24 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPK 83
             +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK
Sbjct:    27 QIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPK 86

Query:    84 IDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVF 141
             +DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TFF  F+VPVF
Sbjct:    87 VDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVF 146

Query:   142 WPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGS 191
             WPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK++Y GK  A     S
Sbjct:   147 WPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGKEDAGKAFAS 196

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ZHM5 RER1 "Protein RER1" [Gallus gallus (taxid:9031)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 92/170 (54%), Positives = 119/170 (70%)

Query:    24 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPK 83
             +++Q +LD+STP+   RWI TL  + IY++RVY +QG+YIVTY              SPK
Sbjct:    27 QIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPK 86

Query:    84 IDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVF 141
             +DP    ++ DG SLPT+ ++EFRPFIRRLPEFKFW++ TK   VA   TFF  F+VPVF
Sbjct:    87 VDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVF 146

Query:   142 WPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGKRSAASTSGS 191
             WPIL+ Y+I+LF +TMKRQ+ HMIKYRYIPF+ GK+KY GK     T  S
Sbjct:   147 WPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKYKGKEDVGKTFAS 196

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQU3	RER1_MOUSE	No assigned EC number	0.5463	0.9793	0.9693	yes	no
P25560	RER1_YEAST	No assigned EC number	0.4402	0.9278	0.9574	yes	no
Q5ZHM5	RER1_CHICK	No assigned EC number	0.5463	0.9793	0.9693	yes	no
P52879	RER1_CAEEL	No assigned EC number	0.5602	0.8402	0.8534	yes	no
O15258	RER1_HUMAN	No assigned EC number	0.5412	0.9793	0.9693	yes	no
Q5R5U4	RER1_PONAB	No assigned EC number	0.5412	0.9793	0.9693	yes	no
Q54D10	RER1_DICDI	No assigned EC number	0.4819	0.8350	0.8617	yes	no
A5PJ65	RER1_BOVIN	No assigned EC number	0.5515	0.9793	0.9693	yes	no
O48671	RER1B_ARATH	No assigned EC number	0.6839	0.9948	0.9897	yes	no
Q498C8	RER1_RAT	No assigned EC number	0.5463	0.9793	0.9693	yes	no
Q10358	RER1_SCHPO	No assigned EC number	0.4619	0.8453	0.8913	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam03248	175	pfam03248, Rer1, Rer1 family	3e-96
COG5249	180	COG5249, RER1, Golgi protein involved in Golgi-to-	4e-62

>gnl|CDD|202582 pfam03248, Rer1, Rer1 family

 Score =  276 bits (708), Expect = 3e-96
 Identities = 97/174 (55%), Positives = 122/174 (70%), Gaps = 5/174 (2%)

Query: 14  PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYIL 73
            + ++ +  SR +Q YLD++TPH   RWI  L    +++LRV   QG+Y+V Y LGIY+L
Sbjct: 2   AVTRFTNKLSRTYQRYLDKTTPHTAYRWIFFLFLLFLFILRVILAQGWYVVCYALGIYLL 61

Query: 74  NLLIGFLSPKIDPEFEALD-----GASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAF 128
           NL + FL+PK DP  E  D     G SLPT   DEFRPFIRRLPEFKFWY+ T+A  +A 
Sbjct: 62  NLFLAFLTPKFDPSLEQEDEDVEEGPSLPTSNDDEFRPFIRRLPEFKFWYSATRATVIAL 121

Query: 129 LMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKYTGK 182
             TFFS FD+PVFWPILL Y+I+LF LTM+RQ+ HMIKY+Y+PF  GK KY  K
Sbjct: 122 FCTFFSFFDIPVFWPILLMYFIILFFLTMRRQIKHMIKYKYVPFDIGKPKYGRK 175

RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Length = 175

>gnl|CDD|227574 COG5249, RER1, Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

 Score =  190 bits (484), Expect = 4e-62
 Identities = 78/163 (47%), Positives = 106/163 (65%), Gaps = 2/163 (1%)

Query: 19  RSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIG 78
            +D   ++Q+YLDR  P P  RW  T     ++ +R++   G+Y++ Y LGIY+LN  + 
Sbjct: 15  MNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLA 74

Query: 79  FLSPKIDPEFE-ALDGASLP-TKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIF 136
           FL+PK D  FE   D   +   +  +EFRPFIRRLPEFKFWY  T+A  +A + ++F IF
Sbjct: 75  FLTPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIF 134

Query: 137 DVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIPFSFGKQKY 179
           DVPVFWPIL+ Y+I L   T +RQ+ HM KYRY PF  GK+KY
Sbjct: 135 DVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNPFDIGKKKY 177

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG1688	188	consensus Golgi proteins involved in ER retention	100.0
PF03248	176	Rer1: Rer1 family; InterPro: IPR004932 RER1 family	100.0
COG5249	180	RER1 Golgi protein involved in Golgi-to-ER retriev	100.0
PF09973	233	DUF2208: Predicted membrane protein (DUF2208); Int	85.46
PF13260	54	DUF4051: Protein of unknown function (DUF4051)	82.02

>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-91  Score=581.30  Aligned_cols=182  Identities=63%  Similarity=1.159  Sum_probs=176.1

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHhheeccEEEehhhHHHHHHHHHHhhcCC
Q 029370            3 GPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSP   82 (194)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FLtP   82 (194)
                      +.+++++++++|+.++.+++++.||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+||||
T Consensus         5 ~~~~~~~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtP   84 (188)
T KOG1688|consen    5 SSGEDSGGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTP   84 (188)
T ss_pred             ccCCCCCCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence            44667778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccc-cccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 029370           83 KIDPEFE-ALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQM  161 (194)
Q Consensus        83 k~Dp~l~-~edg~~Lp~~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI  161 (194)
                      |+|||+| ++||+.||+++|||||||||||||||||+++|||+++|+.||||++||||||||||++||++||++||||||
T Consensus        85 k~Dp~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmrRqI  164 (188)
T KOG1688|consen   85 KVDPELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMRRQI  164 (188)
T ss_pred             CCCchhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999996 479999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccccCCcCcccccCCCC
Q 029370          162 MHMIKYRYIPFSFGKQKYTGKRS  184 (194)
Q Consensus       162 ~HMiKy~YvPf~~gK~~y~~~~~  184 (194)
                      +|||||||+||++||++|+++++
T Consensus       165 ~HMiKyrY~Pf~~gK~~~~~~~~  187 (188)
T KOG1688|consen  165 AHMIKYRYIPFDIGKKKYGSHSD  187 (188)
T ss_pred             HHHHhhcccccccCchhhhcccc
Confidence            99999999999999999988764

>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment

Probab=100.00  E-value=2.4e-88  Score=563.94  Aligned_cols=168  Identities=62%  Similarity=1.174  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHhheeccEEEehhhHHHHHHHHHHhhcCCCCCccccc----
Q 029370           15 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEA----   90 (194)
Q Consensus        15 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~----   90 (194)
                      ++++.++++++||++|||||||++.||+++++|+++|++||+..|||||||||||||+||+||+|||||+||++++    
T Consensus         2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~   81 (176)
T PF03248_consen    2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED   81 (176)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999983    


Q ss_pred             -ccCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029370           91 -LDGASLPT--KGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKY  167 (194)
Q Consensus        91 -edg~~Lp~--~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKy  167 (194)
                       |||+.||+  +++||||||+|||||||||++||||+++|++||||++||||||||||++|||+||++||||||+|||||
T Consensus        82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy  161 (176)
T PF03248_consen   82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY  161 (176)
T ss_pred             ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             46889999  889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcCcccccCC
Q 029370          168 RYIPFSFGKQKYTGK  182 (194)
Q Consensus       168 ~YvPf~~gK~~y~~~  182 (194)
                      ||+|||+||++|++|
T Consensus       162 ~Y~Pf~~gK~~y~~~  176 (176)
T PF03248_consen  162 RYVPFDFGKKKYGRK  176 (176)
T ss_pred             CCCCccccchhccCC
Confidence            999999999999986

The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane

>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-75  Score=479.61  Aligned_cols=168  Identities=46%  Similarity=0.898  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHhheeccEEEehhhHHHHHHHHHHhhcCCCCCccccc-cc
Q 029370           14 PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYGLGIYILNLLIGFLSPKIDPEFEA-LD   92 (194)
Q Consensus        14 ~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l~~-ed   92 (194)
                      .+.+..+.+++.||+||||.+||+..||..+++|+++|++||+..+|||+|||+||||+||+|++|||||+||+.|+ ||
T Consensus        10 n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~   89 (180)
T COG5249          10 NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIED   89 (180)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhcc
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999984 34


Q ss_pred             CC-CCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 029370           93 GA-SLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMIKYRYIP  171 (194)
Q Consensus        93 g~-~Lp~~~~dEFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKy~YvP  171 (194)
                      ++ ...++.|+|||||||||||||||+++|||+++|++.|+|++||||||||||++|||+|+..|||||||||+||||+|
T Consensus        90 d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~rRqIqHM~KYrY~P  169 (180)
T COG5249          90 DDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNP  169 (180)
T ss_pred             ccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            43 44446899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccccC
Q 029370          172 FSFGKQKYTG  181 (194)
Q Consensus       172 f~~gK~~y~~  181 (194)
                      |++||++|++
T Consensus       170 fdigKkky~s  179 (180)
T COG5249         170 FDIGKKKYKS  179 (180)
T ss_pred             hhhhhhhhcc
Confidence            9999999975

>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues

Probab=85.46  E-value=1.7  Score=38.45  Aligned_cols=43  Identities=16%  Similarity=0.461  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 029370          119 AITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQMMHMI  165 (194)
Q Consensus       119 ~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMi  165 (194)
                      +.+-.+++|++++|++.-    ||++.+.||++.+++||.-.++++-
T Consensus         7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~r   49 (233)
T PF09973_consen    7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSYR   49 (233)
T ss_pred             HHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            445567888898877533    6899999999999999998888876

However, these proteins are predicted to contain three or more transmembrane segments.

>PF13260 DUF4051: Protein of unknown function (DUF4051)

Probab=82.02  E-value=1.8  Score=30.34  Aligned_cols=22  Identities=45%  Similarity=0.851  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 029370          146 LCYWIVLFVLTMKRQMMHMIKY  167 (194)
Q Consensus       146 l~Yfi~Lf~lTm~rqI~HMiKy  167 (194)
                      .-|||+|-++..-..+-||.+|
T Consensus         4 awywivli~lv~~gy~~hmkry   25 (54)
T PF13260_consen    4 AWYWIVLIVLVVVGYFCHMKRY   25 (54)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999988

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00