Citrus Sinensis ID: 029406
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 194 | 2.2.26 [Sep-21-2011] | |||||||
| Q1PFH7 | 196 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.989 | 0.790 | 1e-84 | |
| Q9STF9 | 257 | Pentatricopeptide repeat- | no | no | 0.938 | 0.708 | 0.461 | 1e-45 | |
| Q9SAD9 | 517 | Pentatricopeptide repeat- | no | no | 0.582 | 0.218 | 0.280 | 4e-07 | |
| Q3E9F0 | 506 | Pentatricopeptide repeat- | no | no | 0.567 | 0.217 | 0.261 | 4e-07 | |
| Q9FKC3 | 508 | Pentatricopeptide repeat- | no | no | 0.654 | 0.25 | 0.208 | 4e-06 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.546 | 0.115 | 0.263 | 4e-05 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.422 | 0.112 | 0.256 | 0.0001 | |
| Q9LK58 | 551 | Pentatricopeptide repeat- | no | no | 0.572 | 0.201 | 0.269 | 0.0001 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.680 | 0.161 | 0.205 | 0.0002 | |
| Q9ZU27 | 650 | Pentatricopeptide repeat- | no | no | 0.515 | 0.153 | 0.268 | 0.0003 |
| >sp|Q1PFH7|PPR89_ARATH Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 312 bits (799), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 2/196 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMKLY+V
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VR+EIWYRPDMFFYRDMLMMLARNKKV E K+VWEDLK+EEVLFDQHTFGD++R F D+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LP EAM +Y EMR SP P+SLPFRVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFE--DQEWRRESDEE 194
+ E D+E R +SD E
Sbjct: 181 ICEDSDEEARTDSDLE 196
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STF9|PP266_ARATH Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 131/182 (71%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V LKRL+ + D+FIK+HV RLLK D+++V+ E +RQ++ L +K+++V
Sbjct: 73 IGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAIKMFEV 132
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++K+ WY+PD+F Y+D+++ LA++K++ EA +WE +K+E + D T+ ++IR F G
Sbjct: 133 IQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDG 192
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
P++AM +Y +M SP P LPFRV+LKGL+P+P R KVK DF ELFP+ YDPPE+
Sbjct: 193 CPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEE 252
Query: 181 LF 182
+F
Sbjct: 253 IF 254
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
S++ F R+ + KL D + E+ PD FY +L L ++ V +A V+ D+
Sbjct: 364 TSLIKAFLREGNSSVAKKLLDQM-TELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMI 422
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
E+ D ++ +I SG +EA+ ++ +M+ P L F+ I+ GLI
Sbjct: 423 EHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLI 476
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++ F R +V K+ D ++K P+++ Y ++ + K+ EAKQ ++++K+
Sbjct: 274 MINGFCRAGEVERAKKILDFMKKN-GCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKT 332
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ D + ++ F +G EAM + EM++S +L + VIL+GL
Sbjct: 333 GLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGL 383
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++R+++WY+P++ Y +++ML + K+ +A ++++++ E + + + ++
Sbjct: 134 IQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVS 193
Query: 115 AFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLEL----- 168
A+S SG A + M+SS P + +++K + F +KV+D ++
Sbjct: 194 AYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAF-DKVQDLLSDMRRQGI 252
Query: 169 FPDMIVYDPPEDLF 182
P+ I Y+ D +
Sbjct: 253 RPNTITYNTLIDAY 266
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRK--EIWYRPDMFFYRDMLMML 81
R++ + R+ + L+S+ + R ++ D++R+ + + D+ Y +L
Sbjct: 436 RYLGIALDRVSYNTLLSIYTKVGRSEEAL------DILREMASVGIKKDVVTYNALLGGY 489
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
+ K E K+V+ ++KRE VL + T+ +I +S GL EAM I+ E +S+
Sbjct: 490 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 46/82 (56%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD YR +LM + VVE ++V+ D++ +V+ D F ++ F+ SG +A+
Sbjct: 338 PDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMY 397
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+N ++ + P ++ + ++++G
Sbjct: 398 FNSVKEAGLIPDNVIYTILIQG 419
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 37 DLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
DL+S +L EF R++ +++D+++ + P++ Y + L RNKK +A +
Sbjct: 227 DLISFNTLLEEFYRRELFVEGDRIWDLMKSKNL-SPNIRSYNSRVRGLTRNKKFTDALNL 285
Query: 94 WEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ +K E + D HT+ +I A+ E M YNEM+ TP ++ + +++
Sbjct: 286 IDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLI 340
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 3 KESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ ++ + +E++ P F+ FIK + +R ++++ + D++ +C
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF------DEINVC------ 448
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
PD+ + +L + +N E V++++KR + ++ TF +I A+S G
Sbjct: 449 -----GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+AM +Y M + TP + +L L
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL 534
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
++ D+F Y +L LA+++K A QV+ED+K+ D++T+ +IR G EA
Sbjct: 233 GHKLDIFAYNMLLDALAKDEK---ACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEA 289
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ ++NEM + T + + +++ L + K+ D +++F M+
Sbjct: 290 VGLFNEMITEGLTLNVVGYNTLMQVLA-----KGKMVDKAIQVFSRMV 332
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 194 | ||||||
| 224059705 | 194 | predicted protein [Populus trichocarpa] | 0.989 | 0.989 | 0.840 | 1e-86 | |
| 147841740 | 194 | hypothetical protein VITISV_024068 [Viti | 1.0 | 1.0 | 0.819 | 3e-86 | |
| 225436656 | 248 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.782 | 0.819 | 5e-86 | |
| 356569420 | 234 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.824 | 0.797 | 1e-83 | |
| 356523434 | 232 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.831 | 0.797 | 2e-83 | |
| 116830983 | 197 | unknown [Arabidopsis thaliana] | 1.0 | 0.984 | 0.790 | 5e-83 | |
| 145336941 | 196 | pentatricopeptide repeat-containing prot | 1.0 | 0.989 | 0.790 | 5e-83 | |
| 297840301 | 196 | hypothetical protein ARALYDRAFT_475108 [ | 1.0 | 0.989 | 0.790 | 3e-82 | |
| 449442589 | 256 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.757 | 0.773 | 2e-81 | |
| 357438675 | 232 | Pentatricopeptide repeat-containing prot | 0.958 | 0.801 | 0.790 | 4e-81 |
| >gi|224059705|ref|XP_002299976.1| predicted protein [Populus trichocarpa] gi|222847234|gb|EEE84781.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/194 (84%), Positives = 173/194 (89%), Gaps = 2/194 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE LM AKELKRLQS+PVR DRFI S+VSRLLKSDL++VLAEFQRQDQVFLCMKLYDV
Sbjct: 1 MGKEGLMAAKELKRLQSNPVRLDRFITSNVSRLLKSDLLAVLAEFQRQDQVFLCMKLYDV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDMF +RDMLMMLARNKKV EA QVW DL+REEVLFDQHTFGDIIRAF D+G
Sbjct: 61 VRKEIWYRPDMFLFRDMLMMLARNKKVDEANQVWRDLRREEVLFDQHTFGDIIRAFLDNG 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPS+AM IY EMR SP PISLPFRVILKGLIP+PE RE+VKDDFLELFPDMIVYDP ED
Sbjct: 121 LPSKAMDIYEEMRQSPDPPISLPFRVILKGLIPFPELREEVKDDFLELFPDMIVYDPAED 180
Query: 181 LFEDQEWRRESDEE 194
LFEDQE RE D E
Sbjct: 181 LFEDQE--REKDRE 192
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147841740|emb|CAN68786.1| hypothetical protein VITISV_024068 [Vitis vinifera] gi|296083864|emb|CBI24252.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/194 (81%), Positives = 175/194 (90%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+ AKELKRL+S PVRFDRF++S VSRLL+SDLVSVLAEFQRQDQVFL MKLYDV
Sbjct: 1 MGKEGLIAAKELKRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDM+FYRDMLMMLARNKKV E K+VWEDLKREEVLFDQHTFGDI+RAF D G
Sbjct: 61 VRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGG 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPSEAM IY EMR SP P+SLP+RVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPSEAMDIYEEMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFEDQEWRRESDEE 194
LFED++ R ES+++
Sbjct: 181 LFEDEDGRTESEDD 194
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436656|ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 159/194 (81%), Positives = 175/194 (90%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+ AKELKRL+S PVRFDRF++S VSRLL+SDLVSVLAEFQRQDQVFL MKLYDV
Sbjct: 55 MGKEGLIAAKELKRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDV 114
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDM+FYRDMLMMLARNKKV E K+VWEDLKREEVLFDQHTFGDI+RAF D G
Sbjct: 115 VRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGG 174
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPSEAM IY EMR SP P+SLP+RVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 175 LPSEAMDIYEEMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGMIVYDPPED 234
Query: 181 LFEDQEWRRESDEE 194
LFED++ R ES+++
Sbjct: 235 LFEDEDGRTESEDD 248
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569420|ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 154/193 (79%), Positives = 169/193 (87%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+VAKELKR +S PVR DRFI+S VSRLLKSDLV+VLAEFQRQ+Q FLC+KLYD+
Sbjct: 38 MGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFLCVKLYDI 97
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDMFFYRDMLMMLARNK+V EAK+VW DLK EEVLFDQHTFGDIIRAF D+G
Sbjct: 98 VRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQHTFGDIIRAFLDNG 157
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPSEAM IY EMR SP P+SLPFRVILKGLIPYPE REKVKDDFLE+FP MI+YDPPED
Sbjct: 158 LPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKDDFLEIFPGMIIYDPPED 217
Query: 181 LFEDQEWRRESDE 193
LFED + + D
Sbjct: 218 LFEDNKQHNDRDN 230
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523434|ref|XP_003530344.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 154/193 (79%), Positives = 169/193 (87%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+VAKELKR +S PVR DRFI+S VSRLLKSDLV+VLAEFQRQ+Q FLC+KLYD+
Sbjct: 40 MGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFLCVKLYDI 99
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDMFFYRDMLMMLARNK+V EAK+VW DLK EEVLFDQHTFGDIIRAF D+G
Sbjct: 100 VRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQHTFGDIIRAFLDNG 159
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPSEAM IY EMR SP P+SLPFRVILKGLIPYPE REKVKDDFLE+FP MI+YDPPED
Sbjct: 160 LPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKDDFLEIFPGMIIYDPPED 219
Query: 181 LFEDQEWRRESDE 193
LFED + + D
Sbjct: 220 LFEDNKQHNDRDN 232
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116830983|gb|ABK28447.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 312 bits (799), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 2/196 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMKLY+V
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VR+EIWYRPDMFFYRDMLMMLARNKKV E K+VWEDLK+EEVLFDQHTFGD++R F D+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LP EAM +Y EMR SP P+SLPFRVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFE--DQEWRRESDEE 194
+ E D+E R +SD E
Sbjct: 181 ICEDSDEEARTDSDLE 196
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145336941|ref|NP_176425.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122180316|sp|Q1PFH7.1|PPR89_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62350 gi|91806011|gb|ABE65734.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332195836|gb|AEE33957.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 312 bits (799), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 2/196 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMKLY+V
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VR+EIWYRPDMFFYRDMLMMLARNKKV E K+VWEDLK+EEVLFDQHTFGD++R F D+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LP EAM +Y EMR SP P+SLPFRVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFE--DQEWRRESDEE 194
+ E D+E R +SD E
Sbjct: 181 ICEDSDEEARTDSDLE 196
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297840301|ref|XP_002888032.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp. lyrata] gi|297333873|gb|EFH64291.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 2/196 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMKLY+V
Sbjct: 1 MSKEGLIAAKELKRLQTQLVRLDRFIASHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VR+EIWYRPDMFFYRDMLMMLARNKKV E K+VWEDLK+E VLFDQHTFGD++RAF D+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEGVLFDQHTFGDLVRAFLDNE 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LP EA+ +Y EMR SP P+SLPFRVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAIRLYGEMRDSPDPPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFE--DQEWRRESDEE 194
L E D+E R +SD E
Sbjct: 181 LCEESDEEARTDSDLE 196
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442589|ref|XP_004139064.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/194 (77%), Positives = 170/194 (87%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+V KELKRLQS+ +R DRFI SHVSRLLKSDLV+VL E QRQ+ VFLCMKLY+V
Sbjct: 63 MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLYNV 122
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKE+WYRPDMFFYRDMLMMLA+NK+V E KQVWEDLK+E VLFDQHTFGDIIRA+ D+
Sbjct: 123 VRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNT 182
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
+ SEAM IY EMR SP P+SLPFRVILKGLIPYPE RE+VKDDFLELFPDMIVYDPPED
Sbjct: 183 MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPED 242
Query: 181 LFEDQEWRRESDEE 194
LFE+ E R +S+++
Sbjct: 243 LFEEDEDRNKSEDD 256
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357438675|ref|XP_003589614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355478662|gb|AES59865.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/186 (79%), Positives = 165/186 (88%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE L++ KELKRLQS PVR DRF++S+VSRLLKSDLVSVL EF RQD VFL MKLYD+
Sbjct: 36 LGKEGLIITKELKRLQSDPVRLDRFVRSNVSRLLKSDLVSVLFEFHRQDNVFLSMKLYDI 95
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDMFFYRDMLMMLARNK+V E K+VW+DLK E VLFDQHTFGDI+RA+ DSG
Sbjct: 96 VRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGEGVLFDQHTFGDIVRAYLDSG 155
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
+PSEAM IY EMR SP P+SLPFRVILKGLIPYPE REK+KDDFLE+FPDMI+YDPPED
Sbjct: 156 MPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKIKDDFLEVFPDMIIYDPPED 215
Query: 181 LFEDQE 186
LF+D E
Sbjct: 216 LFDDHE 221
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 194 | ||||||
| TAIR|locus:2027149 | 196 | AT1G62350 "AT1G62350" [Arabido | 1.0 | 0.989 | 0.790 | 1.6e-79 | |
| TAIR|locus:2102832 | 257 | AT3G46870 [Arabidopsis thalian | 0.938 | 0.708 | 0.461 | 7.9e-46 | |
| TAIR|locus:2184727 | 712 | VPS9B "AT5G09320" [Arabidopsis | 0.664 | 0.181 | 0.338 | 3.2e-13 | |
| TAIR|locus:2089154 | 222 | EMB3123 "EMBRYO DEFECTIVE 3123 | 0.680 | 0.594 | 0.294 | 4.7e-08 | |
| TAIR|locus:2031825 | 517 | AT1G13040 [Arabidopsis thalian | 0.577 | 0.216 | 0.283 | 7.8e-06 | |
| TAIR|locus:2090014 | 551 | AT3G13150 "AT3G13150" [Arabido | 0.567 | 0.199 | 0.284 | 6.8e-05 | |
| TAIR|locus:1006230454 | 506 | AT5G18475 "AT5G18475" [Arabido | 0.546 | 0.209 | 0.271 | 0.00011 | |
| TAIR|locus:2096484 | 150 | AT3G42570 [Arabidopsis thalian | 0.154 | 0.2 | 0.7 | 0.00095 |
| TAIR|locus:2027149 AT1G62350 "AT1G62350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 155/196 (79%), Positives = 171/196 (87%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMKLY+V
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VR+EIWYRPDMFFYRDMLMMLARNKKV E K+VWEDLK+EEVLFDQHTFGD++R F D+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LP EAM +Y EMR SP P+SLPFRVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFED--QEWRRESDEE 194
+ ED +E R +SD E
Sbjct: 181 ICEDSDEEARTDSDLE 196
|
|
| TAIR|locus:2102832 AT3G46870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 84/182 (46%), Positives = 131/182 (71%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V LKRL+ + D+FIK+HV RLLK D+++V+ E +RQ++ L +K+++V
Sbjct: 73 IGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAIKMFEV 132
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++K+ WY+PD+F Y+D+++ LA++K++ EA +WE +K+E + D T+ ++IR F G
Sbjct: 133 IQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDG 192
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
P++AM +Y +M SP P LPFRV+LKGL+P+P R KVK DF ELFP+ YDPPE+
Sbjct: 193 CPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEE 252
Query: 181 LF 182
+F
Sbjct: 253 IF 254
|
|
| TAIR|locus:2184727 VPS9B "AT5G09320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 44/130 (33%), Positives = 70/130 (53%)
Query: 23 DRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
DR I S RLLK D+V+VL E RQ++ L +K+++ +RKE WY+P + Y DM+ ++A
Sbjct: 542 DRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMA 601
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQ-HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
N + E ++ +K E+ L + F ++ + L M Y M+S P
Sbjct: 602 DNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDR 661
Query: 142 LPFRVILKGL 151
FRV++ GL
Sbjct: 662 ASFRVLVLGL 671
|
|
| TAIR|locus:2089154 EMB3123 "EMBRYO DEFECTIVE 3123" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 40/136 (29%), Positives = 65/136 (47%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ + LKR V ++ + RL+KSDL+SVL E RQD L + +
Sbjct: 48 LSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDYCTLAVHVLST 106
Query: 61 VRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119
+R E Y P D+ Y D++ L RNK+ E ++ ++ + D +IRA +
Sbjct: 107 LRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGA 164
Query: 120 GLPSEAMFIYNEMRSS 135
+ +Y MR S
Sbjct: 165 ERRESVVRVYTLMRES 180
|
|
| TAIR|locus:2031825 AT1G13040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 32/113 (28%), Positives = 56/113 (49%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ F R+ + KL D + E+ PD FY +L L ++ V +A V+ D+
Sbjct: 365 SLIKAFLREGNSSVAKKLLDQMT-ELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIE 423
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
E+ D ++ +I SG +EA+ ++ +M+ P L F+ I+ GLI
Sbjct: 424 HEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLI 476
|
|
| TAIR|locus:2090014 AT3G13150 "AT3G13150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 33/116 (28%), Positives = 63/116 (54%)
Query: 37 DLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
DL+S +L EF R++ +++D+++ + P++ Y + L RNKK +A +
Sbjct: 227 DLISFNTLLEEFYRRELFVEGDRIWDLMKSKN-LSPNIRSYNSRVRGLTRNKKFTDALNL 285
Query: 94 WEDLKREEVLFDQHTFGDIIRAFS-DSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ +K E + D HT+ +I A+ D+ L E M YNEM+ TP ++ + +++
Sbjct: 286 IDVMKTEGISPDVHTYNALITAYRVDNNL-EEVMKCYNEMKEKGLTPDTVTYCMLI 340
|
|
| TAIR|locus:1006230454 AT5G18475 "AT5G18475" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 29/107 (27%), Positives = 56/107 (52%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
F R +V K+ D ++K P+++ Y ++ + K+ EAKQ ++++K+ +
Sbjct: 278 FCRAGEVERAKKILDFMKKN-GCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKL 336
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D + ++ F +G EAM + EM++S +L + VIL+GL
Sbjct: 337 DTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGL 383
|
|
| TAIR|locus:2096484 AT3G42570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 98 (39.6 bits), Expect = 0.00095, P = 0.00095
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVS 31
SKE L+ AKELKRLQ++ VR DRFI SH S
Sbjct: 8 SKEGLIAAKELKRLQTNLVRLDRFIDSHPS 37
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.140 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 194 194 0.00076 111 3 11 22 0.40 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 583 (62 KB)
Total size of DFA: 167 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.02u 0.12s 19.14t Elapsed: 00:00:01
Total cpu time: 19.02u 0.12s 19.14t Elapsed: 00:00:01
Start: Mon May 20 22:33:01 2013 End: Mon May 20 22:33:02 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q1PFH7 | PPR89_ARATH | No assigned EC number | 0.7908 | 1.0 | 0.9897 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 194 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.94 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.94 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.91 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.91 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.89 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.89 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.67 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.18 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.15 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.89 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.78 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.74 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.69 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.66 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.59 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.51 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.51 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.49 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.49 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.44 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.43 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.41 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.2 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.17 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.15 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.08 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.06 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.0 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.84 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.76 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.59 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.54 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.52 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.52 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.44 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.43 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 97.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.41 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.4 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.38 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.38 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.36 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.32 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.31 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.3 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.27 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.27 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.25 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.24 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.22 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.19 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.19 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.18 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.16 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.1 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.1 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.06 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.98 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 96.96 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.94 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.93 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.92 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.85 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 96.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.72 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.7 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.61 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.55 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.53 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.5 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 96.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.3 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.26 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 96.25 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.17 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.16 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.12 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.1 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.06 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 96.02 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.93 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.92 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.91 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.91 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 95.84 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.79 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 95.76 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.75 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 95.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 95.73 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.66 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.55 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 95.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 95.52 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 95.47 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.33 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.31 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.27 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.17 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 95.05 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 95.03 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 95.01 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.76 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 94.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 94.5 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 94.25 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 94.16 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.14 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 94.07 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 93.98 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.93 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 93.92 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 93.92 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 93.89 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 93.75 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 93.74 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 93.73 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.64 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.61 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 93.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 93.24 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 93.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 93.1 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 93.04 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 92.92 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.84 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 92.77 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 92.7 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 92.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 92.62 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 92.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 92.39 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.27 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.26 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 92.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 92.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.97 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.95 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.89 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 91.84 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.83 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 91.57 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 91.33 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 91.32 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 91.17 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 90.71 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.55 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.39 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 90.38 | |
| cd00280 | 200 | TRFH Telomeric Repeat binding Factor or TTAGGG Rep | 90.07 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 90.05 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 89.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 89.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 89.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 88.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 88.69 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.45 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.33 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 88.0 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 87.79 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.76 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 87.69 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 87.16 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 87.06 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 86.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 86.88 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 86.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 86.32 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 86.2 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 86.03 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 85.56 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.53 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 85.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 84.66 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 84.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 84.64 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 84.24 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 84.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 83.44 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 83.26 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 82.97 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 82.64 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 82.57 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 82.37 | |
| PF11663 | 140 | Toxin_YhaV: Toxin with endonuclease activity YhaV; | 82.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 81.92 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 81.77 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 81.61 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 81.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 81.6 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 81.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 80.99 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.98 | |
| COG5108 | 1117 | RPO41 Mitochondrial DNA-directed RNA polymerase [T | 80.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 80.64 | |
| KOG2050 | 652 | consensus Puf family RNA-binding protein [Translat | 80.59 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 80.5 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 80.44 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 80.05 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-26 Score=206.07 Aligned_cols=141 Identities=12% Similarity=0.235 Sum_probs=107.6
Q ss_pred chhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 34 LKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
....|+.+|.+|++.|++++|.++|++|. ..|+.||..+|++||.+|++.|++++|.++|.+|.+.|+.||..+|++||
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34556777777777777777777777777 67777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
.+|++.|++++|..+|++|.+.|+.||..+|++||.+|++.|+ .++|.++|++|...|..||
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~-----~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ-----LPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHcCCCCC
Confidence 7777777777777777777777777777777777777777777 7777777777777666665
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=203.66 Aligned_cols=139 Identities=15% Similarity=0.223 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..|+.+|.+|++.|+++.|.++|++|. ..|+.||..+|++||.+|++.|++++|.++|.+|...|+.||..|||+||.+
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445566666666666666666666666 4566666666666666666666666666666666666666666666666666
Q ss_pred HhcCCChHHHHHHHHHhHh--CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 116 FSDSGLPSEAMFIYNEMRS--SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~--~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
|++.|++++|.++|++|.. .|+.||..||++||.+|++.|+ .+.|.++|+.|...+++++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~-----ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ-----VDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHcCCCCC
Confidence 6666666666666666644 3556666666666666666666 5666666666655554433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-24 Score=187.89 Aligned_cols=126 Identities=13% Similarity=0.208 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.++++|++|++.|++++|.++|+.|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 355666666666666666666666641 566666666666666666666666666666666666666666666666
Q ss_pred hcCCChHHHHHHHHHhHh-CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 117 SDSGLPSEAMFIYNEMRS-SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|+ .++|.+++++|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-----~~eA~~~~~~~ 488 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-----LDEAYAMIRRA 488 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-----HHHHHHHHHHC
Confidence 666666666666666654 3666666666666666666666 66666666655
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=184.05 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
++++|++|++.|++++|.++|+.|.. +|+.+||+||.+|++.|++++|+++|.+|.+.|+.||..||+++|.+|+
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34555555555555555555555531 4555555555555555555555555555555555555555555555555
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+.|.++.|.+++..|.+.|+.||..+|++||++|++.|+ ++.|.++|+.|
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~-----~~~A~~vf~~m 386 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR-----MEDARNVFDRM 386 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC-----HHHHHHHHHhC
Confidence 555555555555555555555555555555555555544 44444444444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=180.16 Aligned_cols=127 Identities=12% Similarity=0.083 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.++++|.+|++.|+++.|..+|+.|. .||..+||+||.+|++.|++++|+++|.+|.+.|+.||..||+++|.+|
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 45566666666666666666666664 2566666666666666666666666666666666666666666666666
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|+ ++.|.++|+.|.
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-----~~~A~~vf~~m~ 350 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS-----WGEAEKVFSRME 350 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC-----HHHHHHHHhhCC
Confidence 6666666666666666666666666666666666666666 666666666554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-22 Score=180.21 Aligned_cols=133 Identities=12% Similarity=0.062 Sum_probs=114.7
Q ss_pred hchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 33 LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
+....++++|.+|++.|++++|.++|+.|. .||..+||+||.+|++.|++++|+++|.+|.+.|+.||..||+++
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 334567788888999999999999998885 278888999999999999999999999999888899999999999
Q ss_pred HHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
|.+|++.|+++.|.++++.|.+.|+.|+..+|++||++|++.|+ .+.|.++|+.|...
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~-----~~~A~~vf~~m~~~ 453 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-----IDKALEVFHNIPEK 453 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC-----HHHHHHHHHhCCCC
Confidence 99999999999999999999888888998999999999998888 88888888888653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=93.03 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 55566666666666666666666666666666666666666666666553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=92.82 Aligned_cols=50 Identities=24% Similarity=0.484 Sum_probs=49.0
Q ss_pred CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 104 p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=93.78 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+|.++|+-...+.|.++|++-+ ....+.+..+||.+|.+-.-. ...++..+|....+.||..|||+++.+.
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 45689999999999999999999999 788899999999999987643 3488999999999999999999999999
Q ss_pred hcCCChHHH----HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 117 SDSGLPSEA----MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 117 ~~~g~~~~a----~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
++.|+++.| .+++.+|++-|+.|...+|..+|..+++.++....+..-..+|.+.
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 999988754 6788899999999999999999999999888423233333344433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-11 Score=65.08 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=16.8
Q ss_pred CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 101 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.7e-11 Score=64.04 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=32.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 65 IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 65 ~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
.|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-08 Score=81.56 Aligned_cols=128 Identities=11% Similarity=0.004 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+.+.|++++|.++|+.+. ..+......+++.+..+|++.|++++|...+.++.+. .|+...+..+...|
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~ 292 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34456677888899999999999887 3322222456788888999999999999998888765 46667778888889
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC---CCchHHhHHHHHhhhcccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP---YPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~---~g~~~~~~~~~a~~~~~~m~~ 174 (194)
.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+ ...+..+++.|..
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~-----~~~a~~~~~~~~~ 346 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGR-----AKESLLLLRDLVG 346 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCcc-----chhHHHHHHHHHH
Confidence 9999999999999887765 5888888888877664 446 6666777776653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=78.30 Aligned_cols=132 Identities=7% Similarity=-0.008 Sum_probs=107.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..+...+.+.|++++|...|+++.+ . .+.+...+..+...|.+.|++++|.++|.++...+-.....+++.+..+|++
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALA-A-DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh-H-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 3455667789999999999999973 2 2334668888889999999999999999999876422234678999999999
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
.|++++|...++.+.+. .|+...+..+...+.+.|+ .+.|..+++.+....|..
T Consensus 262 ~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~-----~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEG-----PEAAQALLREQLRRHPSL 315 (389)
T ss_pred cCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCC-----HHHHHHHHHHHHHhCcCH
Confidence 99999999999999776 4777778899999999999 889999988776554433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.5e-08 Score=79.47 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+..||.+||.+.|+--..++|..++.+-.....+.+..+||.+|.+-+-. ...+++.+|....++||..|||+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 56799999999999999999999999999988999999999999875533 33788999999999999999999999
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
+..+.|++ +.....|.+++.+|+..|+.|-
T Consensus 282 c~akfg~F-~~ar~aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 282 CAAKFGKF-EDARKAALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHhcch-HHHHHHHHHHHHHHHHhCCCcc
Confidence 99999984 3345678899999999988775
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.9e-09 Score=55.06 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=17.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-08 Score=53.65 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 106 (194)
.+||+||.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-08 Score=52.91 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 104 (194)
+||++|.+|++.|+++.|.++|+.|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-08 Score=52.69 Aligned_cols=33 Identities=30% Similarity=0.696 Sum_probs=31.7
Q ss_pred HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC
Q 029406 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139 (194)
Q Consensus 107 ~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p 139 (194)
.+||++|.+|++.|+++.|..+|++|++.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.59 E-value=8e-06 Score=73.34 Aligned_cols=130 Identities=5% Similarity=-0.104 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+...+.+.|++++|..+++.+. ...+.+...|..+...|.+.|++++|...|.++.+.. +.+...+..+..+|.
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAA--DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455666666777777777777765 2334456666777777777777777777777665543 224555666666666
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
+.|++++|..+|+.+.+. .+.+..++..+...+...|+ .+.|..+++.+....
T Consensus 647 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 647 VMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKR-----TESAKKIAKSLQKQH 699 (899)
T ss_pred HcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhC
Confidence 666666666666666543 13335555666666666666 555555555554433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-06 Score=64.46 Aligned_cols=91 Identities=10% Similarity=0.066 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC----------------ChHHH
Q 029406 67 YRPDMFFYRDMLMMLARN-----KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG----------------LPSEA 125 (194)
Q Consensus 67 ~~p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g----------------~~~~a 125 (194)
...|..+|..+|+.|.+. |+++-...-+..|.+.|+.-|..+|+.||+.+=+.. ..+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 445667777777777654 566666666777777777777777777777766532 34567
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCch
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~ 157 (194)
.+++++|..+|+.||..|+..|++.+++.+..
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 88999999999999999999999999888875
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-06 Score=73.25 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+...|++++|..+++.+.+ . .+++...+..+-..+.+.|++++|...|.++...+ |+..++..+..+|
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQK-Q-HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 345667777788888888888888862 2 34566777778888888888888888888877653 4446777788888
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
.+.|+.++|...++.+.+. .+.+...+..+...|...|+ .+.|.++|+.+....|.
T Consensus 747 ~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKD-----YDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcC-----HHHHHHHHHHHHHhCCC
Confidence 8888888888888887665 34567778888888888888 78888888777655543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=58.89 Aligned_cols=75 Identities=13% Similarity=0.320 Sum_probs=34.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHhcCC--------ChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 78 LMMLARNKKVVEAKQVWEDLKREEV-LFDQHTFGDIIRAFSDSG--------LPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 78 i~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g--------~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
|.-|...+++...-.+|..+++.|+ .|+..+|+.++.+-++.. ..-..+.+|++|..++++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333333444444444444444444 444444444444444332 1223344555555555555555555555
Q ss_pred HhhC
Q 029406 149 KGLI 152 (194)
Q Consensus 149 ~~~~ 152 (194)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-07 Score=48.95 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=15.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhCC
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~g 136 (194)
|||++|++|++.|++++|.++|++|++.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-07 Score=48.26 Aligned_cols=31 Identities=13% Similarity=0.360 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 102 (194)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.9e-06 Score=70.99 Aligned_cols=123 Identities=11% Similarity=-0.000 Sum_probs=103.3
Q ss_pred hhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHH
Q 029406 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110 (194)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 110 (194)
+.+.-++-.+++.+....+++.+..++-..+.+. ....-..|..++|+.|.+.|..++++.++..=...|+-||..|||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4455677788888888899999999988887321 222233445699999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY 154 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~ 154 (194)
.||..+.+.|++..|..+...|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888888888888888777654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.3e-06 Score=55.77 Aligned_cols=80 Identities=11% Similarity=0.251 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHhcCCCCCHHhH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWY-RPDMFFYRDMLMMLARNKK--------VVEAKQVWEDLKREEVLFDQHTF 109 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~--------~~~a~~l~~~m~~~g~~p~~~ty 109 (194)
..-|..|...++++....+|+.++ +.|+ .|++.+|+.++.+-++... .-.++.++..|...+++|+..||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 355666777799999999999999 8999 9999999999999988542 45678899999999999999999
Q ss_pred HHHHHHHhcC
Q 029406 110 GDIIRAFSDS 119 (194)
Q Consensus 110 ~~li~~~~~~ 119 (194)
+.++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.1e-06 Score=64.83 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~ 116 (194)
+...+..+...++++.+..+++........+++...|..+-..+.+.|+.++|+.++++..+. .| |....+.++..+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLL 190 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 344555555666666666666665422333445556666666666666666666666666554 23 355566666666
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
...|+.+++..++....... +.|...+..+..++...|+ .+.|..+++......
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~-----~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR-----YEEALEYLEKALKLN 244 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT------HHHHHHHHHHHHHHS
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc-----ccccccccccccccc
Confidence 66666666666555554432 3344455555566666666 556666655554433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00044 Score=51.93 Aligned_cols=130 Identities=7% Similarity=-0.049 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-LFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~ty~~li~~ 115 (194)
.+..+...+...|+++.|.+.|+...+ . .+.+...+..+-..+...|++++|...|.+...... ......+..+-.+
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALT-L-NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 444566677778999999999888862 2 233566777778888888999999999988876432 2344567777888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|...|+++.|...|....... +.+...+..+...+...|+ .+.|...++....
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~ 197 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ-----YKDARAYLERYQQ 197 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 888899999999888876542 3345677777788888888 7777777666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=63.94 Aligned_cols=121 Identities=15% Similarity=0.095 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..-..+.+.|++++|...|+...+ ..| |....+.++..+...|+.+++..++....... +.|...+..+-.+|..
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcc
Confidence 344444556666666666666642 224 35555566666666666666666555554443 3344455566666666
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
.|+.++|..+|+..... .+.|..+...+...+...|+ .+.|.++..
T Consensus 227 lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~-----~~~A~~~~~ 272 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGR-----KDEALRLRR 272 (280)
T ss_dssp HT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccc-cccccccccccccccccccc-----ccccccccc
Confidence 66666666666665443 13355555556666666666 555555543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00017 Score=54.23 Aligned_cols=134 Identities=10% Similarity=0.063 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|+++.|...|+...+ . .+.+...+..+-..|...|++++|...+.+..+.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE-H-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455677788899999999999999873 2 23457788889999999999999999999888764 3356788889999
Q ss_pred HhcCCChHHHHHHHHHhHhCCC-CCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPA-TPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|...|++++|...|+....... ......+..+...+...|+ .+.|...+.......|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-----FDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCc
Confidence 9999999999999999876532 2344567777788888999 8888888776654443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=65.80 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=82.7
Q ss_pred HHHHHHHH-hhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 22 FDRFIKSH-VSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 22 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
++++-.+. +..+.+...-++|..|.+.|..+.++.++..=. +.|+-||.++||.||+.+.+.|++..|.++...|...
T Consensus 89 L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 89 LYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 44444333 233445555699999999999999999999988 8999999999999999999999999999999999998
Q ss_pred CCCCCHHhHHHHHHHHhcC
Q 029406 101 EVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 101 g~~p~~~ty~~li~~~~~~ 119 (194)
+...+..|+...+.+|.+.
T Consensus 168 e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 168 EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hccCCchHHHHHHHHHHHh
Confidence 8888888988888888877
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3e-06 Score=75.08 Aligned_cols=88 Identities=8% Similarity=0.178 Sum_probs=81.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 56 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.++-.+. ..|+.|+-+||.++|.-||..|+.+.|- +|.-|+-.....+...|+.++.+...+++.+.+.
T Consensus 11 nfla~~e-~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHE-ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHH-HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 4566777 7999999999999999999999999999 9999999999999999999999999999988766
Q ss_pred CCCCChhhHHHHHHhhCCCCc
Q 029406 136 PATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 136 g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.|-+.||+.|+.+|...||
T Consensus 80 --ep~aDtyt~Ll~ayr~hGD 98 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGD 98 (1088)
T ss_pred --CCchhHHHHHHHHHHhccc
Confidence 7889999999999999999
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00019 Score=64.00 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
.++.+..++-.+ .|+..+|..+++.-..+|+++-|..+..+|++.|++.+..-|-.||-+ .++...+..++..|.+
T Consensus 189 ekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe 264 (1088)
T KOG4318|consen 189 EKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQE 264 (1088)
T ss_pred HHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHH
Confidence 334444442223 689999999999999999999999999999999999999988888877 7888888889999999
Q ss_pred CCCCCChhhHHHHHHhhCCCCc
Q 029406 135 SPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 135 ~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.|+.|++.||.-.+-.+.++|.
T Consensus 265 ~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 265 KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hcCCCCcchhHHHHHhhhcchh
Confidence 9999999999888877777655
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=55.57 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHh-----cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC----------------HHHHHHH
Q 029406 35 KSDLVSVLAEFQR-----QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK----------------VVEAKQV 93 (194)
Q Consensus 35 ~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----------------~~~a~~l 93 (194)
...+..+|+.|.+ .|.++=....+..|. +.|+.-|..+|+.||+.+=+... -+-|++|
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 4567788888875 477777888899999 89999999999999999987432 3668899
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHhcCCCh
Q 029406 94 WEDLKREEVLFDQHTFGDIIRAFSDSGLP 122 (194)
Q Consensus 94 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 122 (194)
+++|...|+.||..|+..|++.+++.+..
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999998754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0032 Score=55.60 Aligned_cols=130 Identities=9% Similarity=-0.020 Sum_probs=100.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-..+...|++++|...|+.... . -+-+...|..+-..|...|++++|+..|.+..... +.+...+..+-..|
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALK-L-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 345566667788999999999998873 2 23357788888889999999999999999887653 33567788888899
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.+.|++++|...|+..... .+-+...|+.+-..+...|+ .++|.+.|+.....
T Consensus 444 ~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~Al~l 496 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNK-----FDEAIEKFDTAIEL 496 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccC-----HHHHHHHHHHHHhc
Confidence 9999999999999988764 23446788888888888998 77777776665443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.001 Score=55.53 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=99.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.++..+...++++.|..+|+++.+ .. |+. ...|.+.+...++-.+|.++..+.... .+-|......-...|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~-~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRE-RD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHh-cC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 577777778999999999999984 33 554 445888888889999999999988854 234677788888889999
Q ss_pred CChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
++++.|..+.+++.+. .|+ ..+|..|..+|.+.|+ .+.|.-.++.+..
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d-----~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGD-----FENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCC-----HHHHHHHHhcCcC
Confidence 9999999999998765 555 5699999999999999 8888877776643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0031 Score=56.24 Aligned_cols=126 Identities=7% Similarity=-0.009 Sum_probs=73.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE----AKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..+...|++++|...|+... .. .+.+...+..+=..|.+.|++++ |...|++..... +.+...+..+...+.+
T Consensus 220 ~~l~~~g~~~eA~~~~~~al-~~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESAL-AR-GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHH-hc-CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 34455566666666666655 21 12234555555566666666654 566666665432 2245567777777777
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|++++|...++...... +-+...+..+...+.+.|+ .+.|...++.+...+|
T Consensus 297 ~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~-----~~eA~~~l~~al~~~P 349 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQ-----YTAASDEFVQLAREKG 349 (656)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCc
Confidence 777777777777765541 2234455556666777777 6677777666554433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0036 Score=55.83 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=22.2
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m 97 (194)
.+...|+++.|...|+.... +.| +...+..+...+...|++++|...+..+
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 33444444444444444431 112 2334444444444444444444444444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0045 Score=54.09 Aligned_cols=122 Identities=10% Similarity=-0.096 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHh
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD-QHTFGDIIRAFS 117 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~ 117 (194)
.+-..+...|++++|...|+...+ ..|+ ...+..+-..|...|++++|...+++..+.. |+ ...+..+...+.
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 333445567888888888888863 3344 5566677777888888888888888877653 32 222333444566
Q ss_pred cCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
..|++++|...+++..... .|+ ...+..+-..+...|+ .++|...+..+
T Consensus 418 ~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~-----~~eA~~~~~~~ 467 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGK-----HELARKLTKEI 467 (553)
T ss_pred hccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCC-----HHHHHHHHHHh
Confidence 6788888888888876542 343 3345556666777888 77777776654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00054 Score=54.97 Aligned_cols=134 Identities=10% Similarity=0.068 Sum_probs=88.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA----RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+.+.++++.|.+.++.|+ +. -.|.. .+.+..+|. -...+.+|..+|+++.. .+.++..+.|.+..+
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~-~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQ-QI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH-CC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHH
Confidence 45788889999999999999997 33 34433 333444433 34568999999999855 467788899999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhh
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFE 183 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 183 (194)
+...|++++|..++.+..+.. +-+..|...++-.....|+. .+.+.+.+.+++...|....+.
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~----~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKP----TEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-T----CHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHhCCCChHHH
Confidence 999999999999988865542 22445555566655556661 2556677777766665555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0047 Score=43.10 Aligned_cols=106 Identities=9% Similarity=0.057 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+...|+++.|...|+... .. .+.+...|..+-..|.+.|++++|...|++....+ +.+...|..+-..|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLA-AY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH-Hh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 35566677778899999999999886 22 23467788888888888999999999999876654 44667777788889
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
...|+++.|...|+...+. .|+...+..+
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 9999999999999887654 3555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0078 Score=40.65 Aligned_cols=109 Identities=6% Similarity=-0.108 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCHHhHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQHTFGDII 113 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~li 113 (194)
.+......+.+.|++++|.+.|+.+.....-.| ....+..+-..+.+.|++++|...|..+.... .......+..+-
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 345566677888999999999999973222111 23456668888899999999999999887642 222345677788
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHH
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 146 (194)
.++.+.|+.+.|...++..... .+.+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR-YPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH-CcCChhHHHH
Confidence 8888999999999999988776 2334444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0035 Score=55.36 Aligned_cols=125 Identities=7% Similarity=-0.126 Sum_probs=97.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+-..+...|++++|+..|+.... ..|+ ...|..+-..+...|++++|...|++..+.. +-+...|..+-..|...
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33445568999999999999873 3454 5678888888889999999999999887653 33577899999999999
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
|++++|...|+...+.. +.+...|..+...+.+.|+ .+.|...++.....
T Consensus 413 g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~-----~~eA~~~~~~al~~ 462 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGS-----IASSMATFRRCKKN 462 (615)
T ss_pred CCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHh
Confidence 99999999999887652 3346677777788888899 88888887766443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0034 Score=47.51 Aligned_cols=123 Identities=4% Similarity=-0.030 Sum_probs=75.6
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-hcCCC--hHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF-SDSGL--PSEA 125 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~--~~~a 125 (194)
++.+++...++... ..-+.|...|..+=..|...|++++|...|.+..+.. +-|...+..+-.++ ...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L--~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKI--RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34444554454443 1233456677777777777777777777777666543 22555666665553 55555 4777
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
..++++..+.. +-+..++..+-..+.+.|+ .++|...++.+....||++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~-----~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQAD-----YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCCCCc
Confidence 77777766552 2245666666666777777 7777777777766666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.01 Score=42.48 Aligned_cols=103 Identities=5% Similarity=-0.165 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+...-..+...|++++|...|+.... --+.+...|..+=.++.+.|++++|...|....... +.+...+..+-.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44455666789999999999999872 223467788888888999999999999999998753 447788999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
..|++++|...|+..... .|+...|.
T Consensus 104 ~~g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 999999999999997664 45544333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.011 Score=55.00 Aligned_cols=115 Identities=11% Similarity=-0.046 Sum_probs=63.3
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l 128 (194)
|++++|...|+...+ ..|+...|..+-.++.+.|++++|...+.+..... +-+...++.+-..+...|++++|..+
T Consensus 590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566666666655542 33455555555566666666666666666555442 22344555555566666666666666
Q ss_pred HHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 129 ~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|+...+. .+-+...+..+-..+...|+ .+.|...++...
T Consensus 666 l~~AL~l-~P~~~~a~~nLA~al~~lGd-----~~eA~~~l~~Al 704 (987)
T PRK09782 666 LERAHKG-LPDDPALIRQLAYVNQRLDD-----MAATQHYARLVI 704 (987)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHH
Confidence 6655443 12234555556666666666 555555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0039 Score=39.14 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..+...+...|++++|...|+...+ . .+.+...+..+-..+...+++++|.+.|....... +.+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALE-L-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3455566778899999999988863 2 22344667777888888889999999988877654 3344678888888888
Q ss_pred CCChHHHHHHHHHhHh
Q 029406 119 SGLPSEAMFIYNEMRS 134 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~ 134 (194)
.|+.+.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8999988888877654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00053 Score=44.28 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=55.1
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
+|+++.|+.+|+.+.+...-.|+...+..+-.+|.+.|++++|..++++ ...+.. +....-.+-.+|.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788899999999874222222455555578888889999999999987 222211 23444455778888899999988
Q ss_pred HHHH
Q 029406 128 IYNE 131 (194)
Q Consensus 128 l~~~ 131 (194)
+|+.
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.05 Score=47.63 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~ 115 (194)
+..+-..+...|++++|...++.... ..|+ ...+..+...+...|++++|...+.+..... .| +...+..+-.+
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~ 450 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHH
Confidence 44455667789999999999999973 3343 2233334445666899999999999887653 23 44557778888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPE 156 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~ 156 (194)
|...|+.++|...+..+... .|+ ....+.+...|+..|+
T Consensus 451 l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH
Confidence 89999999999999886544 344 3444555556677765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.003 Score=44.29 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLK---------------REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~---------------~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
|..++..+|.++++.|+.+....+....= .....|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34456666666666666666655553321 223668889999999999999999999999988765
Q ss_pred C-CCCCChhhHHHHHHhhC
Q 029406 135 S-PATPISLPFRVILKGLI 152 (194)
Q Consensus 135 ~-g~~p~~~ty~~ll~~~~ 152 (194)
. +++.+..+|..|++-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 5 77777888888887654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0032 Score=49.92 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC----------------hHHHH
Q 029406 68 RPDMFFYRDMLMMLARN-----KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL----------------PSEAM 126 (194)
Q Consensus 68 ~p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~----------------~~~a~ 126 (194)
..|..+|-.++..+... ++++-.-.-+..|++.|+.-|..+|+.||+.+=+..- -.=+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34555666666555443 4555555666777777777777788877777665532 23457
Q ss_pred HHHHHhHhCCCCCChhhHHHHHHhhCCCCch
Q 029406 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEF 157 (194)
Q Consensus 127 ~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~ 157 (194)
.++++|...|+.||-.+-..|++++.+.|..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8899999999999999999999999988873
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0024 Score=50.99 Aligned_cols=116 Identities=11% Similarity=0.130 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
|+.+|..+-+.+.++.|.++|...++...+...++...++|..++ .++.+.|..||+...+. +..+...|...|.-+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 444455555555555566666655533333444444444544432 23345556666555432 3335555555555555
Q ss_pred cCCChHHHHHHHHHhHhCCCCCCh---hhHHHHHHhhCCCCc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPIS---LPFRVILKGLIPYPE 156 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~---~ty~~ll~~~~~~g~ 156 (194)
+.|+.+.|..+|+..... +.++. ..|..+++--.+.|+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCC
Confidence 566666666666555443 22211 355555555445554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0028 Score=44.29 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=85.1
Q ss_pred CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 67 YRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 67 ~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
..| +......+-..+...|++++|...|......+ +.+...|..+-.+|.+.|+++.|..+|+.....+ +.+..+|.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 344 34556677788889999999999999987754 4477889999999999999999999999876653 44567777
Q ss_pred HHHHhhCCCCchHHhHHHHHhhhcccccccCCchhh
Q 029406 146 VILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181 (194)
Q Consensus 146 ~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~ 181 (194)
.+-..+...|+ .+.|...++......|....
T Consensus 90 ~la~~~~~~g~-----~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 90 HAAECLLALGE-----PESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHhccccch
Confidence 77888889999 88888888877666654443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.023 Score=54.05 Aligned_cols=121 Identities=8% Similarity=-0.007 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.....+...|+.++|..+++. .+.+...+..+-..+.+.|++++|+..|.+..+.. +-+...+..+...|...
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 445556667777777777661 23445556667777778888888888888777653 33567777888888888
Q ss_pred CChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|++++|...++...+. .| +..++..+...+...|+ .++|.++++....
T Consensus 651 g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~-----~~eA~~~~~~al~ 699 (1157)
T PRK11447 651 GDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGD-----TAAAQRTFNRLIP 699 (1157)
T ss_pred CCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCC-----HHHHHHHHHHHhh
Confidence 8888888888866543 23 34455556666667777 7777777776544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.028 Score=52.36 Aligned_cols=126 Identities=6% Similarity=-0.205 Sum_probs=76.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 120 (194)
+...+.+.|+++.|...|+... ... +++...+..+...+.+.|++++|...+.+..+. .|+...|..+-..+.+.|
T Consensus 548 la~all~~Gd~~eA~~~l~qAL-~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAE-QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 3344556677777777777665 222 222222222223333457777777777766544 456677777777777788
Q ss_pred ChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 121 ~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
++++|...|+...... +-+...++.+-..+...|+ .++|...++......
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~-----~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGD-----IAQSREMLERAHKGL 673 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhC
Confidence 8888887777766552 3334566666667777777 777777776654433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.019 Score=48.06 Aligned_cols=128 Identities=11% Similarity=-0.000 Sum_probs=93.6
Q ss_pred HHHHHHHh--cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHH--HHHHH
Q 029406 40 SVLAEFQR--QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG--DIIRA 115 (194)
Q Consensus 40 ~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~--~li~~ 115 (194)
.+..++.. .|+++.|.+....-. ...-.| ...|-..-.+..+.|+++.|...+.++.+. .|+...+- .....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~-~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l 162 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNA-DHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-hcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHH
Confidence 34444443 699999998888765 221112 233433345557899999999999999764 55654333 44678
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...|+++.|...++...+.. +-+...+..+...|.+.|+ ++.+.++++.+....+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gd-----w~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGA-----WSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHcCC
Confidence 889999999999999997774 4457788899999999999 9999999998876544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0023 Score=40.19 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=73.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
+..+-..+...|++++|..+|.+..+.. +.+...+..+...|...+++++|..+|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556677888999999999999887653 2344778889999999999999999999876653 3344677788888888
Q ss_pred CCchHHhHHHHHhhhccccccc
Q 029406 154 YPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 154 ~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.|+ .+.|...+......
T Consensus 81 ~~~-----~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGK-----YEEALEAYEKALEL 97 (100)
T ss_pred HHh-----HHHHHHHHHHHHcc
Confidence 888 77777777654433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.01 Score=51.60 Aligned_cols=166 Identities=16% Similarity=0.086 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhcCCc-----------------hhHHHHHHHHh--hhhchhhHHH---HHHHHHhcCCHhHHHHHHHHH
Q 029406 4 ESLMVAKELKRLQSHP-----------------VRFDRFIKSHV--SRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVV 61 (194)
Q Consensus 4 ~a~~vi~~l~~~~~~~-----------------~~~~~~~~~~~--~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m 61 (194)
+--.+|+..+|+-... ++++..+...- -++.+++|.+ +=..|.|.++++.|.-.|+.-
T Consensus 436 dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA 515 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA 515 (638)
T ss_pred HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhh
Confidence 4445666666664432 35566555542 3444567765 456688999999999999988
Q ss_pred HhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC
Q 029406 62 RKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 62 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
.+ +.| +.+....+...+-+.|..++|++++++.....-+ |...----...+...+++++|+..++++++- .|+
T Consensus 516 ~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~ 589 (638)
T KOG1126|consen 516 VE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQ 589 (638)
T ss_pred hc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--Ccc
Confidence 63 666 5777788888999999999999999998876533 4444444456667789999999999999875 565
Q ss_pred -hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 141 -SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 141 -~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
...|-.+-..|.+.|. .+.|..-|..+..-+|+..
T Consensus 590 es~v~~llgki~k~~~~-----~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 590 ESSVFALLGKIYKRLGN-----TDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHHHHHHcc-----chHHHHhhHHHhcCCCccc
Confidence 5677777788998898 8888888887766555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0043 Score=44.43 Aligned_cols=112 Identities=10% Similarity=-0.075 Sum_probs=87.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
..+|+...+ +.|+ .+...-..+...|++++|...|....... +.+...|..+-.++.+.|++++|...|+....
T Consensus 13 ~~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344555442 3344 35556677788999999999999987664 44888999999999999999999999999986
Q ss_pred CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 135 SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 135 ~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
. -+.+..++..+-.++...|+ .++|...|+......|.
T Consensus 87 l-~p~~~~a~~~lg~~l~~~g~-----~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 87 L-DASHPEPVYQTGVCLKMMGE-----PGLAREAFQTAIKMSYA 124 (144)
T ss_pred c-CCCCcHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCC
Confidence 5 24577888888889999999 88888888876655543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.013 Score=53.34 Aligned_cols=127 Identities=10% Similarity=0.038 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|++.+|..+|+.... . -+.+...+..+...+...|++++|+..+++.... .+.+.. +..+-..+.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALS-L-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH
Confidence 56677778888999999999999863 1 2334666778888889999999999999998776 233555 888888899
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
..|+.++|...++...+.. +-+...+..+...+...|. .+.|.+.++....
T Consensus 128 ~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~-----~e~Al~~l~~~~~ 178 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL-----SAPALGAIDDANL 178 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-----hHHHHHHHHhCCC
Confidence 9999999999999987752 3344555666677777777 7777777775554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.037 Score=49.73 Aligned_cols=126 Identities=9% Similarity=-0.007 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+.-+-....+.|++++|..+++.... +.|| ......+...+.+.+++++|+..+++.....-. +....+.+-.+
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~ 163 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 344556666678999999999999973 5575 667778889999999999999999998876422 66678888888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+.+.|.+++|..+|++.... .+-+..++..+-..+-..|+ .+.|...|+..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~-----~~~A~~~~~~a 214 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGA-----LWRARDVLQAG 214 (694)
T ss_pred HHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 99999999999999999873 23346788888888888888 67766666654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0076 Score=54.98 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CCCCHHhHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-----VLFDQHTFGDIIR 114 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~p~~~ty~~li~ 114 (194)
.-|-++...++..++++-|+.++ ..+.+...+.--.+-++|...+.+++|..++....... ..++......|.-
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~-~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAME-AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhh-hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 44566677788888888888888 56766666677788888888888888888888876532 2334444678888
Q ss_pred HHhcCCChHHHHHHHHHhHhC-CC----------C--CChh-hHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSS-PA----------T--PISL-PFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~-g~----------~--p~~~-ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
+|...+++++|..+++.+.+. .. . ||.. .+..++..+...|+ ..+|.+.++.+...
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-----l~~Ae~~le~l~~~ 445 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-----LPTAQKKLEDLSST 445 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh
Confidence 888888888888888888762 10 1 2222 23344555667788 77888887776443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.012 Score=41.95 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH--HhHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFF---YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ--HTFGDI 112 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~l 112 (194)
+..++..+ ..++...+...++.+.+. .+.+... .-.+=..+...|++++|...|.......-.|+. ...-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33444444 367777777777777632 2222122 222335666678888888888877776522221 234445
Q ss_pred HHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
-..+...|++++|...++......+ ....+...-+.|.+.|+ .+.|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~-----~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGD-----YDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCC-----HHHHHHHHH
Confidence 6777777888888887766433332 23344455566777777 777766654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.076 Score=44.50 Aligned_cols=123 Identities=10% Similarity=0.006 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
....+...+...|+.+.|.++++...+ ..||.. -.++.+....++.+++++..+...+.. +=|...+.++-..|
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~ 338 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLL 338 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345677888889999999999988873 345542 123444456699999999999887653 23566788999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+.+++++|...|+...+. .|+..+|..+...+.+.|+ .++|.+++++-
T Consensus 339 ~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~-----~~~A~~~~~~~ 387 (398)
T PRK10747 339 MKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHK-----PEEAAAMRRDG 387 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 9999999999999998765 6999999999999999999 88887777643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0036 Score=50.25 Aligned_cols=114 Identities=9% Similarity=0.083 Sum_probs=85.9
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHh---HHHHHHHHhcCCC
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT---FGDIIRAFSDSGL 121 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---y~~li~~~~~~g~ 121 (194)
+...|++++|+++++.. .+.......+..|.+.++++.|.+.+..|.+.+ .|... ..+.++.+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchh
Confidence 44579999998887543 467788889999999999999999999998764 34432 3444444444467
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+.+|+.+|+++.++ +.++..+.+.+..++...|+ +++|.+++.+..
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~-----~~eAe~~L~~al 228 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGH-----YEEAEELLEEAL 228 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCC-----HHHHHHHHHHHH
Confidence 99999999998665 67888899999999999999 889888877653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.019 Score=45.12 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 85 g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+.+.+|.-+|++|.+ ...|+..+-|-...++...|++++|..+++....+
T Consensus 187 ek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345555555555522 13445555555555555555555555555554443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0079 Score=40.62 Aligned_cols=103 Identities=11% Similarity=0.108 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC--CCCCChhhHHHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS--PATPISLPFRVIL 148 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~ll 148 (194)
++..+...+.+.|++++|...|..+.... -......+..+..++.+.|+++.|...|+..... +.+.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45667777889999999999999998653 1122456777899999999999999999998764 1122245667777
Q ss_pred HhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 149 KGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
..+.+.|+ .+.|...++......|...
T Consensus 84 ~~~~~~~~-----~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGD-----KEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCC-----hHHHHHHHHHHHHHCcCCh
Confidence 77888888 8888898888766655444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.049 Score=45.79 Aligned_cols=127 Identities=7% Similarity=-0.110 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFF---YRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDI 112 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~l 112 (194)
-...+...+...|+.+.|.++++...+ ..||... .....-.....++.+.+.+.++...+.. -.|+.....++
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 345677888899999999999999974 2244331 2222222334578888888888776542 33332566688
Q ss_pred HHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
-..|.+.|++++|.+.|+........|+...+..+...+.+.|+ .++|.+++++
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~-----~~~A~~~~~~ 395 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD-----KAEAAAMRQD 395 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHH
Confidence 88999999999999999965554557999999999999999999 8888888775
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.037 Score=52.66 Aligned_cols=129 Identities=12% Similarity=0.032 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+.+.|++++|+..|+.... . -+-+...+..+...|...|++++|+..++...... +-+..++..+-.+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~-~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~ 680 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLT-R-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALA 680 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHH
Confidence 3445667778889999999999999973 2 23468889999999999999999999999876542 2245567778888
Q ss_pred HhcCCChHHHHHHHHHhHhCC--CCC---ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSP--ATP---ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g--~~p---~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+...|++++|..+|+...... .+| +...+..+...+...|+ .++|...++..
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~-----~~~A~~~y~~A 737 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ-----PQQALETYKDA 737 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 999999999999999987642 122 22455556677888899 77777776654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.052 Score=49.39 Aligned_cols=136 Identities=14% Similarity=0.085 Sum_probs=95.2
Q ss_pred hhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 029406 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111 (194)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~ 111 (194)
++.+......+......|+.++|+++|.... . .-..+...+..+-..+.+.|++++|..+|++..... +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~-~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYR-V-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3334445556666778888888888888885 2 223455567888888888888888888888876552 334556777
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 112 IIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...+...|++++|...+++..+. .+.+.. +..+...+...|+ .+.|...++......|
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~-----~~~Al~~l~~al~~~P 147 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGR-----HWDELRAMTQALPRAP 147 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCC-----HHHHHHHHHHHHHhCC
Confidence 888888888888888888888665 233444 7777777777888 6667766666544333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.056 Score=41.49 Aligned_cols=131 Identities=11% Similarity=0.051 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhC--------CCHHHHHHHHHHHHhcCCCCCH-
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM-FFYRDMLMMLARN--------KKVVEAKQVWEDLKREEVLFDQ- 106 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~a~~l~~~m~~~g~~p~~- 106 (194)
.+..+-..+...|+++.|...|+...+...-.|.. ..+..+=..+.+. |++++|...|..+.... |+.
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 149 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSE 149 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCCh
Confidence 34556677888999999999999997433322332 1233333333332 67899999999887652 222
Q ss_pred HhH-----------------HHHHHHHhcCCChHHHHHHHHHhHhC-C-CCCChhhHHHHHHhhCCCCchHHhHHHHHhh
Q 029406 107 HTF-----------------GDIIRAFSDSGLPSEAMFIYNEMRSS-P-ATPISLPFRVILKGLIPYPEFREKVKDDFLE 167 (194)
Q Consensus 107 ~ty-----------------~~li~~~~~~g~~~~a~~l~~~M~~~-g-~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~ 167 (194)
..+ -.+-..|.+.|++..|...++...+. . -+.....+..+...+.+.|+ .++|..
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-----~~~A~~ 224 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL-----KDLAQD 224 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-----HHHHHH
Confidence 111 13456678889999999999998765 1 12235688888899999999 788877
Q ss_pred hcccccc
Q 029406 168 LFPDMIV 174 (194)
Q Consensus 168 ~~~~m~~ 174 (194)
+++.+..
T Consensus 225 ~~~~l~~ 231 (235)
T TIGR03302 225 AAAVLGA 231 (235)
T ss_pred HHHHHHh
Confidence 7765543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.025 Score=47.78 Aligned_cols=111 Identities=14% Similarity=0.019 Sum_probs=91.1
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHhcCCChH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD-QHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~ 123 (194)
....|+++.|...++.+.+ ..+-|.+.+......+.+.++.++|.+.++++... .|+ ....-.+-.+|.+.|+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3467889999999999863 34456777788889999999999999999999765 555 566777888999999999
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHh
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~ 160 (194)
+|..+++.-..+ .+-|+..|..|-.+|...|+..+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHH
Confidence 999999987655 467889999999999999983333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.015 Score=53.06 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=44.8
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDM--FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
.+.|+++.|+..|++..+ ..|+. ..+ .++..+...|+.++|+..+++.. .....+....-.+...|...|+++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 345555555555555542 22332 122 45555555555555555555544 111111222222233444445555
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
+|..+|+.+.+.. +-+...+..++..+...++
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCC
Confidence 5555555554431 1123333344444444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.053 Score=43.57 Aligned_cols=122 Identities=10% Similarity=-0.097 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~ 115 (194)
+...=..+.+.|++++|...|+...+ ..| +...|+.+=..|...|++++|...|++..+. .| +..+|..+-.+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 33444456778999999999988873 334 5788888888999999999999999988764 34 46678888888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+...|++++|...|+..... .|+......+...+...++ .++|.+.|..
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~-----~~~A~~~l~~ 190 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLD-----PKQAKENLKQ 190 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCC-----HHHHHHHHHH
Confidence 88999999999999987654 3433222222222334455 6666666643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.097 Score=43.99 Aligned_cols=152 Identities=7% Similarity=-0.036 Sum_probs=106.0
Q ss_pred HHHHhcCCchhHHHHHHHHhhhhchhhHHHHHHHHHh--cCCHhHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhCCCH
Q 029406 11 ELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQR--QDQVFLCMKLYDVVRKEIWYRPDM-FFYRDMLMMLARNKKV 87 (194)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~ 87 (194)
.+.+.-..|..+..+...... +.....+..++.. .|++..|.+.+....+ ..|+. ..+-..-.+..+.|++
T Consensus 61 l~~~~~~~p~~~~~~~~~r~~---~k~~~~~~~glla~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~ 134 (409)
T TIGR00540 61 GLRRFFRLGAHSRGWFSGRKR---RKAQKQTEEALLKLAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDE 134 (409)
T ss_pred HHHHHHHccHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCH
Confidence 334444445554444433322 2333455566554 7999999999987762 34553 3344445677788999
Q ss_pred HHHHHHHHHHHhcCCCCCHH--hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHH
Q 029406 88 VEAKQVWEDLKREEVLFDQH--TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF 165 (194)
Q Consensus 88 ~~a~~l~~~m~~~g~~p~~~--ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a 165 (194)
+.|.+.+.+..+.. |+.. .--+....+...|+++.|...++.+.+.. +-+...+..+...+.+.|+ ++.+
T Consensus 135 ~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d-----~~~a 206 (409)
T TIGR00540 135 ARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA-----WQAL 206 (409)
T ss_pred HHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh-----HHHH
Confidence 99999999986543 4442 34445788888999999999999998874 3356788889999999999 9999
Q ss_pred hhhcccccccC
Q 029406 166 LELFPDMIVYD 176 (194)
Q Consensus 166 ~~~~~~m~~~~ 176 (194)
.++++.....+
T Consensus 207 ~~~l~~l~k~~ 217 (409)
T TIGR00540 207 DDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHcC
Confidence 99988887653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=42.15 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
++..+...|+++.|..+.+.... .-+-|...|..+|.+|.+.|+..+|.++|..+.
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33444445555555555555541 122345555555555555555555555555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.057 Score=40.81 Aligned_cols=108 Identities=5% Similarity=0.032 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHH-HHhCCC--HHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMM-LARNKK--VVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
.+..+-..|...|+++.|...|+...+ +.| +...+..+=.+ |...|+ .++|.+++++..+..-. +...+..+
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~L 150 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLL 150 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHH
Confidence 344555677789999999999999873 334 45566655554 467676 59999999999887533 77789999
Q ss_pred HHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
-..+.+.|++++|...|+.+.+. .+|+..-+..+ .+
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i-~~ 186 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLV-ES 186 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH-HH
Confidence 99999999999999999999876 46666665544 54
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.054 Score=45.84 Aligned_cols=114 Identities=10% Similarity=0.039 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHH-HHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLY-DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~-~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+..+-+.|-+.|+-.+|++.+ +..+ -++-+..+.-=|-..|....-.++++..|++. .-++|+..-|-.+|..
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmias 668 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHH
Confidence 3445555566666666665543 2222 12334555555555566666667777777654 3378999999999987
Q ss_pred Hhc-CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 116 FSD-SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 116 ~~~-~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
|.+ .|++.+|+++|.+.+.+ ++-|......|++.+...|.
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 765 59999999999999876 78899999999999998885
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0052 Score=37.57 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=29.2
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
+.|++++|+++|+.... . .+-+...+..+..+|.+.|++++|..++..+...
T Consensus 3 ~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ-R-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHH-H-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666666666666642 1 1224555556666666666666666666655544
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.063 Score=44.39 Aligned_cols=105 Identities=14% Similarity=-0.005 Sum_probs=82.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
-..+...|+++.|+..|++... . -+-+...|..+-.+|.+.|++++|+..+++..... +.+...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~-~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID-L-DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 4456678999999999999973 2 22357778888888999999999999999998763 3367789999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
++.|...|+..... .|+......++..|
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999998764 45555555555444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.029 Score=40.01 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM--FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
...+.+-..+...|+++.|...|++.. .....|+. ...-.|-..+...|++++|+..+....... +....+...=
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~-~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~G 125 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKAL-ANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHH
Confidence 334456677888999999999999998 44423332 234446677888999999999997754433 3445677888
Q ss_pred HHHhcCCChHHHHHHHHH
Q 029406 114 RAFSDSGLPSEAMFIYNE 131 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~ 131 (194)
..|.+.|+.++|...|+.
T Consensus 126 di~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 899999999999999875
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.13 Score=40.15 Aligned_cols=123 Identities=8% Similarity=-0.090 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.......+.|++..|...|.... ..-++|...|+.+=-+|-+.|++++|..-|.+..+--.. +...+|.+--.|.-.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~ 181 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHc
Confidence 35566677899999999999985 667788999999999999999999999888887764322 456788888888899
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
|+.+.|..++..-...+ .-|...-..+.......|+ .+.|..+-..
T Consensus 182 gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~-----~~~A~~i~~~ 227 (257)
T COG5010 182 GDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGD-----FREAEDIAVQ 227 (257)
T ss_pred CCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCC-----hHHHHhhccc
Confidence 99999999998887764 3356666667777777888 8888777553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.034 Score=47.98 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcC--CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----C--CCC
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIW--YRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKRE----E--VLF 104 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g--~~p 104 (194)
.+..+...|+..+++++|..++....+... ..++ ..+++.|=..|-..|++++|..+|.+.... + ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 355677788889999999999887754333 2232 358899999999999999999999877632 1 222
Q ss_pred -CHHhHHHHHHHHhcCCChHHHHHHHHH----hHhCCCC-CC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 105 -DQHTFGDIIRAFSDSGLPSEAMFIYNE----MRSSPAT-PI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 105 -~~~ty~~li~~~~~~g~~~~a~~l~~~----M~~~g~~-p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
....+|.+-..|.+.+.+..|..+|.. |+..|.. |+ ..+|..|...|...|+ .+.|.++.+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~-----~e~a~~~~~~~ 476 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN-----YEAAEELEEKV 476 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc-----HHHHHHHHHHH
Confidence 356789999999999999999998886 4344432 44 4799999999999999 88888886654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.081 Score=50.12 Aligned_cols=136 Identities=10% Similarity=0.037 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~ 114 (194)
..+..|+..|.+....++|-++|+.|.+..+ -....|......+.+....+.|..++.+..+.= -.-........+.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 4567889999999999999999999986555 567788999999999999899988888765431 1113445555566
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
.-.+.|+.+++..+|+..... ++=..-.|++.|+.-.+.|+ .+.++.+|+.....+.++
T Consensus 1609 LEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~-----~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGD-----IKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCC-----HHHHHHHHHHHHhcCCCh
Confidence 667888889988888887665 33345788899998888888 777777877765554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0087 Score=36.57 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=49.6
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 82 ~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
.+.|++++|+.+|.++.... +-|...+-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46789999999999987663 227778888999999999999999999998766 45555555443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.016 Score=41.30 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH-----hCCCCCChhhHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR-----SSPATPISLPFR 145 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~-----~~g~~p~~~ty~ 145 (194)
....++..+...|++++|..+...+.... +.|...|..+|.+|...|+...|...|+.+. +-|+.|+..|-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44667778888999999999999998764 5588999999999999999999999999874 348888876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.013 Score=51.10 Aligned_cols=121 Identities=14% Similarity=0.161 Sum_probs=89.3
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
|-.+|.++.|+..|+.-.+ ..|+ ...||-|-.++-..|++.+|.+.+.+..... .-.....+.|-+.|..-|.++
T Consensus 296 YyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccch
Confidence 4567889999999888863 4454 6788888888888899999999888776653 224557788888888888888
Q ss_pred HHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 124 EAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.|..+|....+. .|. ...++.|...|-+.|+ .++|...+++.....
T Consensus 372 ~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgn-----l~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 372 EATRLYLKALEV--FPEFAAAHNNLASIYKQQGN-----LDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHhh--ChhhhhhhhhHHHHHHhccc-----HHHHHHHHHHHHhcC
Confidence 888888876543 343 4677778778888887 777776666554433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.13 Score=41.34 Aligned_cols=121 Identities=7% Similarity=-0.090 Sum_probs=89.6
Q ss_pred CCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 126 (194)
+..+.++.-+.++.......|+ ...|..+=..|.+.|+.++|...|.+..+.. +-+...|+.+-..|...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3445667777777633333443 3456666667889999999999999887753 336789999999999999999999
Q ss_pred HHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 127 FIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 127 ~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|+...+. .|+ ..+|..+-..+...|+ .++|.+.|+......|
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~-----~~eA~~~~~~al~~~P 163 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGR-----YELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCC
Confidence 999998754 444 5677777777888899 8888877776554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.058 Score=37.80 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH--------------hhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVR--------------KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR-EEV 102 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~ 102 (194)
+..+|-++++.|+++....+.+..- ......|+..+..+++.+|+.+|++..|+++.+...+ .++
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I 84 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPI 84 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCC
Confidence 4578889999999999888887652 1234558999999999999999999999999998875 578
Q ss_pred CCCHHhHHHHHHHHhcCCC
Q 029406 103 LFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~ 121 (194)
+.+..+|..|+..+...-+
T Consensus 85 ~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 85 PIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 8889999999998776644
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.16 Score=39.18 Aligned_cols=128 Identities=11% Similarity=0.011 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
...+.+--+|...|+...|.+-+++-.+ ..|+ ..+|..+=..|.+.|..+.|.+-|++..... +-+..+.|..=.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~ 111 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhH
Confidence 3455677788899999999999998873 3354 6688888888999999999999998876543 114556777777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+|..|.+++|+..|+.......-| -..||..+--+..+.|+ .+.|.+.|+.-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-----~~~A~~~l~ra 165 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-----FDQAEEYLKRA 165 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-----chhHHHHHHHH
Confidence 7899999999999999887764333 34677777666667788 77777776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0022 Score=41.27 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhH
Q 029406 84 NKKVVEAKQVWEDLKREEV-LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKV 161 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~ 161 (194)
.|+++.|+.+|+++....- .|+...+-.+-.+|.+.|++++|..+++. .. ..| +....-.+..+|.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~----- 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGK----- 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCC-----
Confidence 5889999999999987643 23555566689999999999999999988 22 222 22344455777889999
Q ss_pred HHHHhhhcc
Q 029406 162 KDDFLELFP 170 (194)
Q Consensus 162 ~~~a~~~~~ 170 (194)
.++|.+.++
T Consensus 74 y~eAi~~l~ 82 (84)
T PF12895_consen 74 YEEAIKALE 82 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.077 Score=38.94 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
.|..+-..|...|++++|...|.+.....-.++ ...|..+-..|.+.|+++.|...+....... +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555666666665555544321111 2445555555556666666666555554321 1123333333333
Q ss_pred hCCCCch---------HHhHHHHHhhhcccccccCCchhhhhhhhhhhhcc
Q 029406 151 LIPYPEF---------REKVKDDFLELFPDMIVYDPPEDLFEDQEWRRESD 192 (194)
Q Consensus 151 ~~~~g~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 192 (194)
+...|+. .....+.|.++++.....+ |++..+..+|-+..+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA-PNNYIEAQNWLKTTG 165 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHhcC
Confidence 3333320 0111345566666555544 444555555554433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.18 Score=41.65 Aligned_cols=120 Identities=10% Similarity=-0.006 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK-REEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~-~~g~~p~~~ty~~li~~~ 116 (194)
..+++.-+.+.|+.+.|.++..+-. .++..|+. ..+-.+.+.++.+.-++..++-. ..+..| ..+.+|=..|
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~ 338 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLA 338 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH-HhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHH
Confidence 3477888889999999999877776 45666662 22233445677777776666444 455666 6889999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
.+++.+.+|...|+. .-...|+..+|+.+-+++.+.|+ ...|.+..++
T Consensus 339 ~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~g~-----~~~A~~~r~e 386 (400)
T COG3071 339 LKNKLWGKASEALEA--ALKLRPSASDYAELADALDQLGE-----PEEAEQVRRE 386 (400)
T ss_pred HHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHcCC-----hHHHHHHHHH
Confidence 999999999999994 34558999999999999999999 6666666554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.065 Score=43.38 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCH--HhHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQ--HTFG 110 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~--~ty~ 110 (194)
+++|+.=++.+. +.+.++|..+|-+|.+ ..|. ..+--+|=+.|-+-|.+++|+.+...+.++. .+.+. ...-
T Consensus 36 sr~Yv~GlNfLL-s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 36 SRDYVKGLNFLL-SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred cHHHHhHHHHHh-hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 455665555554 3457888888888873 2232 2233445566777788889988888877653 22222 2334
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.|-.-|...|-+|+|..+|..+.+.|. .-...-..|+..|-...+ |++|.+.-+...+.+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~tre-----W~KAId~A~~L~k~~ 171 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATRE-----WEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHcC
Confidence 556667888888888888888877542 223456667777775555 777776655444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.27 Score=35.96 Aligned_cols=113 Identities=11% Similarity=-0.004 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
+..+-..+...|++++|...|++..+...-.++ ...+..+-..+.+.|++++|...+.+..... +-+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445555667789999999999998732222222 4678888899999999999999999887653 22456667777777
Q ss_pred hcCCC--------------hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC
Q 029406 117 SDSGL--------------PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155 (194)
Q Consensus 117 ~~~g~--------------~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g 155 (194)
...|+ ++.|.+++...... +...|..++..+...|
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTG 165 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcC
Confidence 77666 34555555554332 3333555555554444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.027 Score=44.85 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=66.5
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK----------------VVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----------------~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
+.++=-.-.+..|+ +.|+..|..+|+.||+.+-+... -.=+++++++|...|+.||..+-..|
T Consensus 86 ~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 86 THVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred chHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 56666667788899 89999999999999999977653 13467899999999999999999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHh
Q 029406 113 IRAFSDSGLP-SEAMFIYNEM 132 (194)
Q Consensus 113 i~~~~~~g~~-~~a~~l~~~M 132 (194)
|+++.+-+-. .+..++.=-|
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHhccccccHHHHHHHHHhh
Confidence 9999998755 3334444444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.2 Score=40.36 Aligned_cols=152 Identities=14% Similarity=0.243 Sum_probs=92.6
Q ss_pred hHHHHHHHHhhhhch--hhHH-HHHHHHHhcCC-----HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--CC----C
Q 029406 21 RFDRFIKSHVSRLLK--SDLV-SVLAEFQRQDQ-----VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR--NK----K 86 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~--~~~~-~ll~~~~~~~~-----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~g----~ 86 (194)
.....+++..+..++ .+.. .+...++-++. +.+.+.+++.|+ +.|++.+.++|-+..-.... .. .
T Consensus 40 ~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~ 118 (297)
T PF13170_consen 40 EISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEI 118 (297)
T ss_pred HHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHH
Confidence 455666666555543 3322 23333333333 455677888888 78899888888774444433 22 3
Q ss_pred HHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHhcCCCh----HHHHHHHHHhHhCCCC-CChhhHHHHHHhhCCCCchH
Q 029406 87 VVEAKQVWEDLKREE---VLFDQHTFGDIIRAFSDSGLP----SEAMFIYNEMRSSPAT-PISLPFRVILKGLIPYPEFR 158 (194)
Q Consensus 87 ~~~a~~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~----~~a~~l~~~M~~~g~~-p~~~ty~~ll~~~~~~g~~~ 158 (194)
..+|..+|+.|++.. -.++-.++.+++.. ..+++ +.+..+|+.+.+.|+. -|...+.+-+-+++.... .
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~-~ 195 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD-Q 195 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc-h
Confidence 677888999999764 34566778888776 33333 5667788888888886 344445444445544333 3
Q ss_pred HhHHHHHhhhcccccccCC
Q 029406 159 EKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 159 ~~~~~~a~~~~~~m~~~~~ 177 (194)
+. ...+.++++.+...+.
T Consensus 196 ~~-v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 196 EK-VARVIELYNALKKNGV 213 (297)
T ss_pred HH-HHHHHHHHHHHHHcCC
Confidence 33 5677777776655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.21 Score=38.29 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCH-HhHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQ-HTFGDI 112 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~-~ty~~l 112 (194)
..+......+...|+++.|...|+...+...-.|. ...+..+-.++.+.|++++|...++++.+.. -.|.. .++..+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 44567777888999999999999999732211121 2466777888999999999999999998653 12221 134444
Q ss_pred HHHHhcC--------CChHHHHHHHHHhHhCCCCCCh-hhHH-----------------HHHHhhCCCCchHHhHHHHHh
Q 029406 113 IRAFSDS--------GLPSEAMFIYNEMRSSPATPIS-LPFR-----------------VILKGLIPYPEFREKVKDDFL 166 (194)
Q Consensus 113 i~~~~~~--------g~~~~a~~l~~~M~~~g~~p~~-~ty~-----------------~ll~~~~~~g~~~~~~~~~a~ 166 (194)
-.++... |+.+.|...|+..... .|+. ..+. .+...+.+.|+ .+.|.
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~-----~~~A~ 186 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA-----YVAAI 186 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----hHHHH
Confidence 4455543 7789999999998765 2322 2221 33445667788 77777
Q ss_pred hhcccccc
Q 029406 167 ELFPDMIV 174 (194)
Q Consensus 167 ~~~~~m~~ 174 (194)
..++....
T Consensus 187 ~~~~~al~ 194 (235)
T TIGR03302 187 NRFETVVE 194 (235)
T ss_pred HHHHHHHH
Confidence 77666543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.2 Score=40.88 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
+.-+-..|.+-+++..|+.+|.+-.
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gl 283 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGL 283 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhh
Confidence 3334444444444444444444443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.24 Score=41.52 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~ 115 (194)
....+...+...++-.+|++++++..+ ..+-|....+.--..|.+.++++.|+.+..++... .| +..+|..|..+
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~ 277 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAEC 277 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHH
Confidence 344566666677888899999888862 23446666677777788999999999999999776 44 45699999999
Q ss_pred HhcCCChHHHHHHHHHhHh
Q 029406 116 FSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~ 134 (194)
|.+.|+++.|...++.+.-
T Consensus 278 Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 278 YIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHhcCcC
Confidence 9999999999999998753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.55 Score=38.18 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC-CCCCh--hhHHHHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP-ATPIS--LPFRVILK 149 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p~~--~ty~~ll~ 149 (194)
....+-..+...|++++|...+++..+.. +.+...+..+-..|...|++++|..+++...... ..|+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33344456677888888888888887654 3345667777788888888888888888765531 12332 34556677
Q ss_pred hhCCCCchHHhHHHHHhhhccccc
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
.+...|+ .+.|..+++...
T Consensus 195 ~~~~~G~-----~~~A~~~~~~~~ 213 (355)
T cd05804 195 FYLERGD-----YEAALAIYDTHI 213 (355)
T ss_pred HHHHCCC-----HHHHHHHHHHHh
Confidence 7778888 777777777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.011 Score=53.51 Aligned_cols=117 Identities=11% Similarity=0.144 Sum_probs=91.2
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
.+....|+++|.+.. ...+-|.+.=|-+=-.++..|++.+|..||.+..+.... +..+|-.+-++|+..|.+..|++
T Consensus 625 kk~~~KAlq~y~kvL--~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVL--RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHH--hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHH
Confidence 346788899998886 234446677677777778889999999999999988753 44578999999999999999999
Q ss_pred HHHHh-HhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 128 IYNEM-RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 128 l~~~M-~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+|+.- +...-.-+....+.|-+++-+.|. +++|.+.+...
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~-----~~eak~~ll~a 742 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGK-----LQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Confidence 99985 444544667788888899888888 77777765443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.18 Score=47.97 Aligned_cols=141 Identities=14% Similarity=0.069 Sum_probs=104.4
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP---DMFFYRDMLMMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m 97 (194)
.+.+.+.+. +-+.-.+..-|..+...++++.|.++++...+.-+++- -.-.|.++++.-...|.-+...++|++.
T Consensus 1446 Dferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1446 DFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 344444443 33345577788888899999999999999874433332 2458899999999999889999999988
Q ss_pred HhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 98 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
.+.. --...|..|...|-+.+.+++|.++|+.|.++ +.-....|...+..+.+..+ .+.|+++++.
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne-----~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE-----AEAARELLKR 1589 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH-----HHHHHHHHHH
Confidence 7664 12457999999999999999999999999776 22445778888888887776 5555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.15 Score=37.07 Aligned_cols=91 Identities=10% Similarity=-0.008 Sum_probs=70.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA-RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+-..+...|++++|..+|..... +.|....|-.=+.+|+ ..|++++|+..|......... |...+-.+-.++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 34445678999999999999973 5566555544444444 469999999999988877643 778888888999999
Q ss_pred CChHHHHHHHHHhHhC
Q 029406 120 GLPSEAMFIYNEMRSS 135 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~ 135 (194)
|+.+.|...|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.055 Score=44.45 Aligned_cols=132 Identities=13% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHH-HHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD-IIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~-li~~~~~ 118 (194)
++-.++.-..++++.+..+...+ ..-..-|.+.|| +-.+++..|.+.+|.++|-......++ |..+|.+ |.++|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence 34444555556777777777777 566666666666 446777889999999999988766666 5666655 5578899
Q ss_pred CCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhh
Q 029406 119 SGLPSEAMFIYNEMRSSPATPIS-LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLF 182 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~-~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~ 182 (194)
++....|++++-.|-.. .+. .....+.+.|-+.++ .--|-+.|+.+...+|+++--
T Consensus 441 nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~e-----FyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANE-----FYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred cCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHccCCCcccc
Confidence 99999998877665433 233 334445566777777 666666677777777777643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.1 Score=40.44 Aligned_cols=106 Identities=9% Similarity=-0.050 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
...+...+.+.+++++|...++... + ..|+ ....+.+=.++.+.|.+++|..+|++....+ +-+..++..+-.++
T Consensus 123 ~~~~a~~L~~~~~~eeA~~~~~~~l-~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l 198 (694)
T PRK15179 123 FILMLRGVKRQQGIEAGRAEIELYF-S--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSL 198 (694)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-h--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 3467788889999999999999997 2 4465 4455555667777899999999999999843 22478899999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
-..|+.++|...|+...+. ..|....|+-.+
T Consensus 199 ~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 199 TRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 9999999999999998664 233445555444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.066 Score=43.53 Aligned_cols=126 Identities=11% Similarity=-0.015 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
-+=.||.+.|.+.+|.+.|+.-.+ ..|-..||-.|-++|.+...+..|+.+|.+-.+. ++.|+....-+-+.+-..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 467888999999999999988873 4567778888999999999999999998876543 333444445556666667
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
+..++|.++|....+. .+.+.....++..+|.-.++ .+.|...++.+.+.
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~-----PE~AlryYRRiLqm 353 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNN-----PEMALRYYRRILQM 353 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCC-----hHHHHHHHHHHHHh
Confidence 7888888888876554 23344455555555666666 66666666554433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.071 Score=44.06 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=74.5
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHH
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~ 159 (194)
.+...|++++|+.+|.+..+.. +-+...|..+-.+|.+.|++++|...++...... +.+...|..+-.+|...|+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~--- 85 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE--- 85 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC---
Confidence 4457799999999999998764 2367788999999999999999999999987652 3356778888888999999
Q ss_pred hHHHHHhhhcccccccCCch
Q 029406 160 KVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 160 ~~~~~a~~~~~~m~~~~~~~ 179 (194)
.+.|...|+......|-.
T Consensus 86 --~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 86 --YQTAKAALEKGASLAPGD 103 (356)
T ss_pred --HHHHHHHHHHHHHhCCCC
Confidence 888888888776655443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.35 Score=35.15 Aligned_cols=91 Identities=9% Similarity=0.087 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP--DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
..+...+...|++++|...|+.... ....| ...+|..+=..|...|++++|+..+.+..... +....+++.+...|
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3444555567888888888877762 22111 12466666677777788888888887766542 22334455555555
Q ss_pred h-------cCCChHHHHHHHHH
Q 029406 117 S-------DSGLPSEAMFIYNE 131 (194)
Q Consensus 117 ~-------~~g~~~~a~~l~~~ 131 (194)
. +.|+++.|...+++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHH
Confidence 5 66666655555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.16 Score=36.99 Aligned_cols=82 Identities=15% Similarity=0.037 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF--DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
-...|..+...+...|++++|+..|.+.....-.| ...+|..+-..|...|++++|...++..... .+....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHH
Confidence 35566777777888999999999999887653222 2357888999999999999999999987654 22234556666
Q ss_pred HHhhC
Q 029406 148 LKGLI 152 (194)
Q Consensus 148 l~~~~ 152 (194)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.66 Score=36.36 Aligned_cols=120 Identities=16% Similarity=0.015 Sum_probs=89.7
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
.-.|+-+.+..+..... ...+-|...-+.......+.|++.+|...|.+.... -++|..+||.+=-+|-+.|+++.|
T Consensus 77 ~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 77 YLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred HhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHH
Confidence 33555666666655553 334456666777899999999999999999998654 478999999999999999999999
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
..-|.+..+- ..-+...+|.|.-.+.-.|+ .+.|..++..-..
T Consensus 154 r~ay~qAl~L-~~~~p~~~nNlgms~~L~gd-----~~~A~~lll~a~l 196 (257)
T COG5010 154 RRAYRQALEL-APNEPSIANNLGMSLLLRGD-----LEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHHHh-ccCCchhhhhHHHHHHHcCC-----HHHHHHHHHHHHh
Confidence 9999987665 22345566677667777788 7777777664433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.44 Score=37.66 Aligned_cols=93 Identities=10% Similarity=0.084 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+.|....-.+.+.+|.-+|++| ..+..|+..+-|-...++...|++++|..++.......-. +..|...+|-+--..
T Consensus 178 awv~la~ggek~qdAfyifeE~--s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~ 254 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEEL--SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHL 254 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHH--hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHh
Confidence 4455455567899999999999 4678999999999999999999999999999999876544 344444444444444
Q ss_pred CCh-HHHHHHHHHhHhC
Q 029406 120 GLP-SEAMFIYNEMRSS 135 (194)
Q Consensus 120 g~~-~~a~~l~~~M~~~ 135 (194)
|.. +...+.+.+.+..
T Consensus 255 Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 255 GKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCChHHHHHHHHHHHhc
Confidence 444 4455577776554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.055 Score=32.67 Aligned_cols=52 Identities=12% Similarity=-0.019 Sum_probs=24.5
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
+.+.|++++|...|+...+ .. +-+...+..+=.++...|++++|...|++..
T Consensus 7 ~~~~g~~~~A~~~~~~~l~-~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALK-QD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHC-CS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555541 11 1134444444445555555555555555544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.23 Score=40.28 Aligned_cols=127 Identities=9% Similarity=0.034 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
-++..|-..++|.+|+++-..+.+ .+-.+. ...|..+-..+....+++.|..++.+..+.+-+ .+..--.+=+.
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v 223 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRV 223 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHH
Confidence 355556666666666666665552 222222 223444444444455566666666655544211 22222233344
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+...|++..|.+.++...+.+-.--+.+...|..+|.+.|+ .+....++..+.
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-----~~~~~~fL~~~~ 276 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK-----PAEGLNFLRRAM 276 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHH
Confidence 55667777777777777665433345667777788888888 776666666554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.041 Score=43.91 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+.+|..+|+.+-+.+..+.|..+|.+..+.+ +..+.....+.|.-+ ..++.+.|..+|+...+. +.-+...|..-++
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 3578999999999999999999999998654 445555555555443 356778899999998765 5667778888888
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
-+...|+ .+.++.+|+.....-++
T Consensus 79 ~l~~~~d-----~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 79 FLIKLND-----INNARALFERAISSLPK 102 (280)
T ss_dssp HHHHTT------HHHHHHHHHHHCCTSSC
T ss_pred HHHHhCc-----HHHHHHHHHHHHHhcCc
Confidence 8889999 88899998876655333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.24 Score=43.11 Aligned_cols=104 Identities=10% Similarity=0.009 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----h--CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA----R--NKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~--~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
--..+.+.|+.++|..+|..+.+ . .|+-..|...+..+. . ....+....+++++... -|.....-.+.-
T Consensus 44 rA~ll~kLg~~~eA~~~y~~Li~-r--NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L 118 (517)
T PF12569_consen 44 RAELLLKLGRKEEAEKIYRELID-R--NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPL 118 (517)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-H--CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhc
Confidence 34444555666666666655552 2 244444443333333 1 11344555555555333 133333333332
Q ss_pred HHhcCCChH-HHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 115 AFSDSGLPS-EAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 115 ~~~~~g~~~-~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
.+.....+. .+...+..+..+|++ .+|+.|-.-|.
T Consensus 119 ~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~ 154 (517)
T PF12569_consen 119 DFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYK 154 (517)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHc
Confidence 333322332 223344445555655 34444444444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.54 Score=40.01 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=106.3
Q ss_pred CchhHHHHHHHHhhhhc-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 029406 18 HPVRFDRFIKSHVSRLL-KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED 96 (194)
Q Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 96 (194)
..+.++-+++-+..-+. ...+..+-+.|-...+..+|++++-+.. .-++-|.....-|-..|-+-|+-.+|.+.+-.
T Consensus 540 ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydqegdksqafq~~yd 617 (840)
T KOG2003|consen 540 LDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYD 617 (840)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhh
Confidence 34455555555543222 2445566677777788888988887774 55666788888899999999999999887654
Q ss_pred HHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC-CCCchHHhHHHHHhhhccccccc
Q 029406 97 LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI-PYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 97 m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~-~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
--+ =++-|..|..=|-.-|....-.++++..|+.. .=+.|+..-|..++-.|. +.|+ .+.|++++.+.+.
T Consensus 618 syr-yfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgn-----yqka~d~yk~~hr- 688 (840)
T KOG2003|consen 618 SYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGN-----YQKAFDLYKDIHR- 688 (840)
T ss_pred ccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhccc-----HHHHHHHHHHHHH-
Confidence 322 14446666666666667777778888888874 235799999999997766 5677 9999999987754
Q ss_pred CCchh
Q 029406 176 DPPED 180 (194)
Q Consensus 176 ~~~~~ 180 (194)
.+|+|
T Consensus 689 kfped 693 (840)
T KOG2003|consen 689 KFPED 693 (840)
T ss_pred hCccc
Confidence 33444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.29 Score=39.91 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=76.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+...|.-|...|+...|.++-...+ + |+...|-.-|.+++..+++++..++-.. . -+..-|-..+..|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----V-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 34456777888898888888766664 3 8999999999999999999988776432 1 1347799999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.+.|...+|..+... .++.--+..|.++|+
T Consensus 248 ~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~ 277 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK----------IPDEERVEMYLKCGD 277 (319)
T ss_pred HHCCCHHHHHHHHHh----------CChHHHHHHHHHCCC
Confidence 999999999888777 223555666777777
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.1 Score=46.71 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+...|.+-...+.|..|+.+++.++. .+..+.-|..+-..|+..|+++.|.++|-+- ..|+-.|..|.
T Consensus 735 ~~kaieaai~akew~kai~ildniqd---qk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~ 802 (1636)
T KOG3616|consen 735 LIKAIEAAIGAKEWKKAISILDNIQD---QKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYG 802 (1636)
T ss_pred HHHHHHHHhhhhhhhhhHhHHHHhhh---hccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHh
Confidence 34556667778899999999999973 2345667889999999999999999999743 25788899999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
++|++..|..+-.+-. |-......|-+-..-+-+.|. ..+|.+++-
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk-----f~eaeqlyi 848 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK-----FAEAEQLYI 848 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc-----hhhhhheeE
Confidence 9999999998876643 333455667666666777777 666666654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.33 Score=39.48 Aligned_cols=121 Identities=7% Similarity=-0.089 Sum_probs=81.0
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHH---HHHHHHhCCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHhcCC
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRD---MLMMLARNKKVVEAKQVWEDLKREEVLFD-QHTFGDIIRAFSDSG 120 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~---li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g 120 (194)
+...|+++.|.++++.... . .+.|...++. ........+....+.+.+.. ..+..|+ ......+-..+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~-~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLD-D-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHH-H-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 3457999999999999873 2 2334444442 22222234555666665554 2223333 344556667888999
Q ss_pred ChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 121 ~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
++++|...++...+.. +.+...+..+-..+...|+ .++|..+++.....
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~-----~~eA~~~l~~~l~~ 177 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR-----FKEGIAFMESWRDT 177 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC-----HHHHHHHHHhhhhc
Confidence 9999999999987763 4456778888888999999 88888888765543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.5 Score=38.23 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=100.8
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-------------CCCCCHH--HHHHHHHHHHhCC
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-------------WYRPDMF--FYRDMLMMLARNK 85 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------~~~p~~~--~~~~li~~~~~~g 85 (194)
.+...+.....+..++.+..|-..|....+..-..+++....... .-.|... ++.-+=..|-..|
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 455555666666666666666666665555555566666654211 1235553 4455566788899
Q ss_pred CHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHH
Q 029406 86 KVVEAKQVWEDLKREEVLFD-QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDD 164 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~ 164 (194)
++++|+.+.++..++ .|+ +..|..--..|-+.|++.+|...++..++-. .-|...-+-....+.+.|+ .+.
T Consensus 209 ~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~-----~e~ 280 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGR-----IEE 280 (517)
T ss_pred CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCC-----HHH
Confidence 999999999988877 354 6678888899999999999999999887653 3466677777777778898 888
Q ss_pred Hhhhcccc
Q 029406 165 FLELFPDM 172 (194)
Q Consensus 165 a~~~~~~m 172 (194)
|.+++..-
T Consensus 281 A~~~~~~F 288 (517)
T PF12569_consen 281 AEKTASLF 288 (517)
T ss_pred HHHHHHhh
Confidence 87775543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.28 Score=43.24 Aligned_cols=130 Identities=10% Similarity=0.175 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-HHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD-QHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li 113 (194)
..+..+-.++-..|++.+|...|..-.. +.|+ ....+-|=..|...|.+++|..+|....+- .|. ...+|.|-
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa 395 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLA 395 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHH
Confidence 4466777777778888888888888762 3444 556777888888888888888888766543 333 34678888
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|-..|++++|..+|++... +.|+ ...|+.+=+.|-..|+ .+.|...+...+..+|
T Consensus 396 ~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~-----v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD-----VSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh-----HHHHHHHHHHHHhcCc
Confidence 888888888888888877543 4555 3456666566666666 5555555554444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.79 Score=36.41 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR- 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~- 114 (194)
+.+.+++.++.-.|.+.-.+.++.+.. ....+.++.....|.+.-.+.|+.+.|...|+...+..-+.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 445567777777889999999999998 466667888889999999999999999999998887666666666666654
Q ss_pred ----HHhcCCChHHHHHHHHHhHhC-CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhh
Q 029406 115 ----AFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181 (194)
Q Consensus 115 ----~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~ 181 (194)
.|.-.+++..|...|.+.... .-.|-...-.+|+..|- |+ ...|.+.++.|....|.+..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl--g~-----l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL--GK-----LKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH--HH-----HHHHHHHHHHHhccCCccch
Confidence 345557888888888876554 22344444455555553 56 67777777777766666543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.15 Score=30.68 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=47.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 79 MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
..+.+.|++++|..+|++..+.. +-+...+..+-.++...|++++|...|+...+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778999999999999998876 337778999999999999999999999998654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.49 Score=43.00 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=79.2
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRP--DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
+-+..+....+..... .....| +...|.-+-++|...|++.+|+.+|..+.....--+...|--+-.+|...|.++.
T Consensus 389 ~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 3333344444444443 333333 4556777888888888999999999888876544467788888899999999999
Q ss_pred HHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 125 AMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 125 a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|...|...... .|+ .-.--.|-..+-+.|+ .++|.+.+..|..
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~-----~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGN-----HEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCC-----HHHHHHHHhcccC
Confidence 99988887654 222 2222223334566777 7788888887663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.49 Score=43.05 Aligned_cols=121 Identities=8% Similarity=0.028 Sum_probs=90.6
Q ss_pred HHHHhcCC--chhHHHHHHHHhhhhch--hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC
Q 029406 11 ELKRLQSH--PVRFDRFIKSHVSRLLK--SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86 (194)
Q Consensus 11 ~l~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 86 (194)
+|-+++.. ++.+..++......+.. .-+..+-++|...|++++|+.+|..+.+ ...--+...|--+=.+|-..|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHHHHHhh
Confidence 34444443 34555555555433332 2356788999999999999999999984 4444458899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 87 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
.++|.+.|....... +-+...-.+|-..+-+.|+.++|.+.++.|.
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999987652 2244456677778889999999999999986
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.19 Score=44.01 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHH---H
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI---I 113 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~l---i 113 (194)
+-++=++|+-+++.+.|++.|+.-. + +.| ..++||.+=.=+.....+|.|...|+.... .|...||+. -
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAi-Q--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAI-Q--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLG 496 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhh-c--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhh
Confidence 3355566777889999999888775 3 445 567777665556666667777777765433 345555543 3
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
-.|.|.+.++.|.-.|+...+-+ +-+.+.-..+-..+-+.|+ .++|.++++...+-+|
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~-----~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKR-----KDKALQLYEKAIHLDP 554 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhh-----hhHHHHHHHHHHhcCC
Confidence 45667777777777776654432 2233333344444445555 6666666665544443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=1 Score=35.67 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCHHhHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQHTFGDII 113 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~li 113 (194)
+|...+..+.+.|++++|...|+.+.+...-.+ ....+.-+=.+|...|++++|...|..+...- -......+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344455555566788888888888763221111 01344556666777788888888888776431 111223344445
Q ss_pred HHHhcCCChHHHHHHHHHhHhC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
..|...|+.+.|..+|+...+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5566778888888877776554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.6 Score=37.73 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=72.2
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--C-----------CH------
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL--F-----------DQ------ 106 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~--p-----------~~------ 106 (194)
.+.|+++.|++-|+.-..-.|+. ....||..+..| +.|+...|+++..++.++|++ | |+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 46899999999999988445555 466788888887 667899999999999988865 2 11
Q ss_pred ---------HhHHHHHHHHhcCCChHHHHHHHHHhHhC-CCCCChhhHHH
Q 029406 107 ---------HTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PATPISLPFRV 146 (194)
Q Consensus 107 ---------~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~ 146 (194)
..||.=...+.+.|+++.|.+.+-+|.-+ ....|+.|...
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 23444455567889999999999998532 33455555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.3 Score=34.86 Aligned_cols=124 Identities=13% Similarity=0.062 Sum_probs=82.2
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
...++.+.|...++.++.+..--+.+.-...| .+-..|+.++|.++++.+.+.. +.|.++|--=+...-..|.--.|
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 35678888888888887433111222222222 1234578888888888887766 66777777666666666666677
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
++-+..-.+. +..|...|.-+-..|...|+ ++.|.-.++++.-..|.
T Consensus 140 Ik~ln~YL~~-F~~D~EAW~eLaeiY~~~~~-----f~kA~fClEE~ll~~P~ 186 (289)
T KOG3060|consen 140 IKELNEYLDK-FMNDQEAWHELAEIYLSEGD-----FEKAAFCLEELLLIQPF 186 (289)
T ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH-----HHHHHHHHHHHHHcCCC
Confidence 7766666555 67788888888888887777 77777777776544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.92 Score=31.83 Aligned_cols=86 Identities=8% Similarity=0.124 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
...++..+...+.+.....+++++. ..+ ..+...+|.+|..|++.. ..+.+.++.. .++......+++.|-
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~-~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESAL-KLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH-ccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 4467777777788888888888887 344 367778888888888764 4445555552 123333455777777
Q ss_pred cCCChHHHHHHHHHh
Q 029406 118 DSGLPSEAMFIYNEM 132 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M 132 (194)
+.+.++.+.-++..+
T Consensus 81 ~~~l~~~~~~l~~k~ 95 (140)
T smart00299 81 KAKLYEEAVELYKKD 95 (140)
T ss_pred HcCcHHHHHHHHHhh
Confidence 777777777777665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.42 Score=37.85 Aligned_cols=102 Identities=8% Similarity=0.052 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhh---
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ----HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLP--- 143 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t--- 143 (194)
...|...+..+.+.|++++|...|..+...- |+. ..+--+-..|...|+++.|...|..+.+. ++-+...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHH
Confidence 5578888887788899999999999998652 332 35667788889999999999999999765 2222222
Q ss_pred HHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 144 FRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 144 y~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
+--+...+...|+ .+.|..+++.....-|-.+
T Consensus 220 l~klg~~~~~~g~-----~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGD-----TAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHHHHHHCcCCH
Confidence 3333445667888 8999999987765444333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.11 Score=32.54 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc----C-CCCC-HHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKRE----E-VLFD-QHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g-~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
.+|+.+=..|...|++++|+..|++.... | -.|+ ..+++.+-.+|...|++++|...+++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566666667777777777777665532 1 1122 456777777777777777777777653
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.34 Score=29.70 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=26.5
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
.|.+.+++++|..+++.+...+ +.+...|...-.+|.+.|+++.|...|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555555555555554442 2234444445555555555555555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.7 Score=37.78 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH-HHHhcCCCCCHHhHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWE-DLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~-~m~~~g~~p~~~ty~~li~ 114 (194)
.+...|+..-+..-+..|..+|...+ ..+..+ .++.++++|..||. ++..-|.++|+ -|+..|-. ..--...+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR-~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~--p~yv~~Yld 443 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAR-EDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDS--PEYVLKYLD 443 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHh-hccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCC--hHHHHHHHH
Confidence 35567777778888999999999999 466666 89999999999974 56889999998 45555533 233456777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCCh--hhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPIS--LPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~--~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
-++..|+-..+..+|+....++..||. ..|.-+|.--+.-|+ +..+.++.+
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd-----L~si~~lek 496 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD-----LNSILKLEK 496 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc-----HHHHHHHHH
Confidence 788889999999999999888777764 789999988888888 655555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.8 Score=36.04 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=81.4
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
...+++.+...+..+..+ ..+-.+.+.++...-++..++-.++++..| -.+.+|=..|.+++.+.+|...|+.. -
T Consensus 281 ~A~~~i~~~Lk~~~D~~L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaA--l 355 (400)
T COG3071 281 EAQEIIEDALKRQWDPRL-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAA--L 355 (400)
T ss_pred HHHHHHHHHHHhccChhH-HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHH--H
Confidence 444455555555555443 333345566777777777777665777777 56677778899999999999999944 4
Q ss_pred CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 101 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
...|+..+|+-+-.+|-+.|+...|.+++++-..
T Consensus 356 ~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 356 KLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4589999999999999999999999999988643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.1 Score=35.57 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
...+.+.+.++.++|.+.++.+.. ..|+ ....-.+=.+|.+.|.+.+|..+++...... +-|...|..|-.+|..
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~ 420 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHH
Confidence 456677889999999999999974 4566 5566667788999999999999999886653 4588899999999999
Q ss_pred CCChHHHHHHHHHh
Q 029406 119 SGLPSEAMFIYNEM 132 (194)
Q Consensus 119 ~g~~~~a~~l~~~M 132 (194)
.|+..++..-..++
T Consensus 421 ~g~~~~a~~A~AE~ 434 (484)
T COG4783 421 LGNRAEALLARAEG 434 (484)
T ss_pred hCchHHHHHHHHHH
Confidence 99988887766654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.16 E-value=2.1 Score=33.24 Aligned_cols=128 Identities=9% Similarity=-0.049 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li 113 (194)
..+..+-..|.+.|..+.|.+-|..-.+ +.|+ ...-|-.=.-+|..|.+++|.+-|++..... +.--..||..+-
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G 146 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLG 146 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH
Confidence 3445566667777888888888877753 3343 3334444445677778888888888776544 333445777777
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
-|-.+.|..+.|...|..-.+.. +-...+.-.+.+...+.|+ .-.|.-+++..
T Consensus 147 ~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~-----y~~Ar~~~~~~ 199 (250)
T COG3063 147 LCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD-----YAPARLYLERY 199 (250)
T ss_pred HHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc-----chHHHHHHHHH
Confidence 77778888888888887765541 1123455555566666666 55555555444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.1 Score=31.11 Aligned_cols=88 Identities=16% Similarity=-0.027 Sum_probs=54.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHH
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD----QHTFGDIIRA 115 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ty~~li~~ 115 (194)
-..+-..|+.++|+.+|+.-. ..|.... ...+-.+=..+...|++++|+.+|++....- |+ ......+--+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 344555688888888888887 5565544 2344445556667788888888888776541 22 1112222335
Q ss_pred HhcCCChHHHHHHHHHh
Q 029406 116 FSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M 132 (194)
+...|+.++|+..+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 66778888887766554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.7 Score=40.34 Aligned_cols=96 Identities=14% Similarity=0.230 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
....+.+++.+....++.....+++.|. . ..-+...+..+-.+|-+.|+.++|.++|+++.+.. +-|..+.|-+-.
T Consensus 83 ~~~lv~~l~~~~~~~~~~~ve~~~~~i~-~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY 158 (906)
T PRK14720 83 DSNLLNLIDSFSQNLKWAIVEHICDKIL-L--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLAT 158 (906)
T ss_pred hhhhhhhhhhcccccchhHHHHHHHHHH-h--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 3344466666666777766666666665 2 33445577778888889999999999999999987 448889999999
Q ss_pred HHhcCCChHHHHHHHHHhHhC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.|+.. +.++|..++......
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH
Confidence 99999 999999988876543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.42 Score=43.84 Aligned_cols=130 Identities=12% Similarity=0.130 Sum_probs=96.8
Q ss_pred hhHHHHHH-HHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHhcCC
Q 029406 36 SDLVSVLA-EFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN------------KKVVEAKQVWEDLKREEV 102 (194)
Q Consensus 36 ~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~------------g~~~~a~~l~~~m~~~g~ 102 (194)
++-.+++- .+.+...|..|.+-|....++....+|+++.-+|=+.|.+. +..++|+++|.+..+..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 33446666 66677888888887777765555557888777766655542 35788999999887764
Q ss_pred CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+-|...=|-+--.++..|++..|.++|.+.++... -...+|-.|.++|...|+ +..|.+.|+..
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q-----y~~AIqmYe~~ 706 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ-----YRLAIQMYENC 706 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH-----HHHHHHHHHHH
Confidence 33666677788888999999999999999998743 345678888899998898 77778777763
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.66 Score=37.44 Aligned_cols=97 Identities=9% Similarity=0.185 Sum_probs=66.8
Q ss_pred CHhHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHhcCCC
Q 029406 50 QVFLCMKLYDVVRKEIWYRP--DMFFYRDMLMMLARNKK----VVEAKQVWEDLKREEVLFDQ--HTFGDIIRAFSDSGL 121 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~----~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~ 121 (194)
.+..|..+|+.|++.+..-. +-..+..||.. ..+. .+.+..+|+.+...|+..+. +..+.++..+-....
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 45778999999997666654 44555566544 4444 46778899999998877533 344444444333332
Q ss_pred --hHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 122 --PSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 122 --~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
+.++..+++.++++|+++....|..+-
T Consensus 196 ~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 347889999999999998888777553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.92 Score=33.00 Aligned_cols=96 Identities=8% Similarity=0.004 Sum_probs=73.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
...+=..+...|++++|..+|......... +..-|-.|=.+|-..|++.+|+..|.....-. +-|+..|-.+-.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444556889999999999998776433 55666777777778899999999999987664 3456777777788889
Q ss_pred CCchHHhHHHHHhhhcccccccC
Q 029406 154 YPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 154 ~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.|+ .+.|.+.|+....+.
T Consensus 116 lG~-----~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDN-----VCYAIKALKAVVRIC 133 (157)
T ss_pred cCC-----HHHHHHHHHHHHHHh
Confidence 999 888888888765443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.55 Score=28.41 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC-ChHHHHHHHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG-LPSEAMFIYNE 131 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~l~~~ 131 (194)
.|..+=..+...|++++|+..|.+..+.. +-+...|..+-.+|.+.| ++++|...|+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33334444444555555555555444432 113344444444555555 35555554444
|
... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.8 Score=33.63 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=97.4
Q ss_pred HHhhhhchhhHHHHHHHHHh----------------cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC-CC-HHH
Q 029406 28 SHVSRLLKSDLVSVLAEFQR----------------QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN-KK-VVE 89 (194)
Q Consensus 28 ~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~-~~~ 89 (194)
++..++-+.|++.+++.+.. +..+.+|+.+|+...-+..+--|..+...+++..... +. ...
T Consensus 105 s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~a 184 (292)
T PF13929_consen 105 SMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNA 184 (292)
T ss_pred HcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhh
Confidence 34455556777777666332 2334556666664421123667888888888888872 22 222
Q ss_pred HHHHHHHHH-hcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC-CCCCChhhHHHHHHhhCCCCchHHhHHHHHhh
Q 029406 90 AKQVWEDLK-REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLE 167 (194)
Q Consensus 90 a~~l~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~ 167 (194)
-.++.+-+. ..|-.++..+...+|..+++.+++.+-++++..-... +..-|...|..+|+...+.|+ ......
T Consensus 185 lYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD-----~~~~~k 259 (292)
T PF13929_consen 185 LYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGD-----QEVMRK 259 (292)
T ss_pred HHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCC-----HHHHHH
Confidence 233444444 3457788999999999999999999999999887554 666799999999999999999 777777
Q ss_pred hccc
Q 029406 168 LFPD 171 (194)
Q Consensus 168 ~~~~ 171 (194)
+.++
T Consensus 260 iI~~ 263 (292)
T PF13929_consen 260 IIDD 263 (292)
T ss_pred HhhC
Confidence 7655
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.91 Score=38.91 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=65.3
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 126 (194)
..|++..|.++|+...+ ..|+...|++.|+.=.+-+..+.|..++....-- .|++.+|--...-=-++|.+..+.
T Consensus 153 ~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 45778888888877652 6688888888888888888888888888877654 488888888888888888888888
Q ss_pred HHHHHhHhC
Q 029406 127 FIYNEMRSS 135 (194)
Q Consensus 127 ~l~~~M~~~ 135 (194)
.+|....+.
T Consensus 228 ~VyerAie~ 236 (677)
T KOG1915|consen 228 SVYERAIEF 236 (677)
T ss_pred HHHHHHHHH
Confidence 888776543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.4 Score=40.29 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=82.2
Q ss_pred hhHHHHHHHHH--hcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQ--RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
..+..++.+++ +.|+.++|..+++... ..+.. |..|.-.+-..|...+..++|..+|+..... -|+......++
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lF 117 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALY-GLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLF 117 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhc-cCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHH
Confidence 34566777775 5799999999999987 44444 8999999999999999999999999987544 68888899999
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.+|+|.+++.+-.+.--+|-+. ++-+...|.++++.+
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHH
Confidence 9999999887655544444332 333345555555443
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.3 Score=31.71 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcC---C--CCCHHhHHHHHHHHhcCCC-hHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREE---V--LFDQHTFGDIIRAFSDSGL-PSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g---~--~p~~~ty~~li~~~~~~g~-~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
+|+++.-.+.-+.+...+++++.+..-. + ..+..+|.+++.+.++... ---+..+|..|++.+..++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444442110 0 1133345555555544444 22334455555544445555555555
Q ss_pred HHhhC
Q 029406 148 LKGLI 152 (194)
Q Consensus 148 l~~~~ 152 (194)
|+++-
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 55443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.3 Score=35.33 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh-----CCCCCChhhHH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS-----SPATPISLPFR 145 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~ty~ 145 (194)
..+++.++..+...|+++.+...+.++.... +-|...|..+|.+|.+.|+...|...|+++.+ -|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456778888888899999999999888765 44888999999999999999999999998754 48888888777
Q ss_pred HHHHhhC
Q 029406 146 VILKGLI 152 (194)
Q Consensus 146 ~ll~~~~ 152 (194)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7766643
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.61 E-value=2.2 Score=31.63 Aligned_cols=122 Identities=9% Similarity=0.087 Sum_probs=79.6
Q ss_pred HHHHHHhcCC-chhHHHHHHHHh----hhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHH
Q 029406 9 AKELKRLQSH-PVRFDRFIKSHV----SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMML 81 (194)
Q Consensus 9 i~~l~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 81 (194)
+..+++.... .+++..-++... ..-.+..+..+-+.|++.|+.+.|.+.|..++ .....|. ...+-.+|+.+
T Consensus 5 ~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~ 83 (177)
T PF10602_consen 5 IEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVA 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHH
Confidence 3444444333 234555554432 22234567789999999999999999999998 4544443 44667889999
Q ss_pred HhCCCHHHHHHHHHHHHhc---CCCCCH----HhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 82 ARNKKVVEAKQVWEDLKRE---EVLFDQ----HTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 82 ~~~g~~~~a~~l~~~m~~~---g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
...+++..+.....+.... |-.++. ..|..|... ..|++..|-.+|-+..
T Consensus 84 i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l--~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 84 IFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANL--AQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH--HhchHHHHHHHHHccC
Confidence 9999999998888777643 222222 233333332 3578888888877764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.79 Score=38.94 Aligned_cols=64 Identities=8% Similarity=-0.109 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ----HTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+...|+.+=.+|.+.|++++|+..|++..+. .|+. .+|..+-.+|...|++++|...++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667888888888899999999999886655 4553 46888899999999999999988887764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.28 E-value=3.3 Score=35.43 Aligned_cols=125 Identities=9% Similarity=-0.020 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
++-+=+.|..-+....|.+-|..-.+ =.+.|-..|..|=.+|.-.+++.=|+-.|++..+- -+-|...|.+|=.+|.
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYE 443 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHH
Confidence 34445666777777788887777752 23447778888888888888888888888876543 2338899999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+.++.++|..+|......|-. +...|.-|.+.|-+.++ .++|...+..
T Consensus 444 kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d-----~~eAa~~yek 491 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKD-----LNEAAQYYEK 491 (559)
T ss_pred HhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHh-----HHHHHHHHHH
Confidence 999999999999998877643 56788888888888888 6666666553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.24 E-value=3.9 Score=38.48 Aligned_cols=83 Identities=11% Similarity=-0.002 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-.+=.+.|.+.+|++-|-.- -|...|..+|+.+.+.|.+++..+.+...++..-+|... +.||-+|
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 3445556666677777777665443 367788888888888888888888887776666666644 5788888
Q ss_pred hcCCChHHHHHH
Q 029406 117 SDSGLPSEAMFI 128 (194)
Q Consensus 117 ~~~g~~~~a~~l 128 (194)
++.++..+..++
T Consensus 1177 Akt~rl~elE~f 1188 (1666)
T KOG0985|consen 1177 AKTNRLTELEEF 1188 (1666)
T ss_pred HHhchHHHHHHH
Confidence 888887765443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.14 Score=31.09 Aligned_cols=64 Identities=8% Similarity=0.101 Sum_probs=50.6
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC-chHHhHHHHHhhhcccccc
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP-EFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g-~~~~~~~~~a~~~~~~m~~ 174 (194)
+..+|..+-..+...|++++|...|....+.. +-+...|..+-.++...| + .++|.+.++....
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~-----~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKD-----YEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCcc-----HHHHHHHHHHHHH
Confidence 56788889999999999999999999987752 335678888888888888 7 7777777665433
|
... |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.8 Score=37.68 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=60.8
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCC----CCHHhHHHHHHHH
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE--EVL----FDQHTFGDIIRAF 116 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~----p~~~ty~~li~~~ 116 (194)
.|.+.+.+..|.++|.+-. ++.| |....+-+=-..-..+.+.+|...|..-... .+- .-.-+++.|=.+|
T Consensus 389 ey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 3455566666666666654 2333 3444444433334455566666666544410 011 1223455555566
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
.+.+.+++|+..|++-... .+-|..||.++-..|...|. ++.|.+.|.+
T Consensus 466 Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgn-----ld~Aid~fhK 514 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGN-----LDKAIDHFHK 514 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcC-----hHHHHHHHHH
Confidence 6666666666666655443 23345556655555555555 5555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.04 E-value=2.8 Score=36.06 Aligned_cols=120 Identities=12% Similarity=0.003 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.-+.+=-+++.++-|..+|+.-.. +.|. -..|.-.+.+=-..|++..|.++|..-... .|+...|.+.|+.=.+
T Consensus 112 kYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElR 186 (677)
T KOG1915|consen 112 KYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELR 186 (677)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Confidence 345555678888999999988762 3343 345666666667789999999999977554 8999999999999999
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
.+.++.|..+++...-. -|+..+|--..+---++|. ...+..++..
T Consensus 187 ykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~-----~~~aR~Vyer 232 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN-----VALARSVYER 232 (677)
T ss_pred hhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc-----HHHHHHHHHH
Confidence 99999999999987644 3888888777776667777 6666666553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.69 Score=28.26 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=46.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
..+.+.++++.|.++++.+.. . .+.+...|...=..+.+.|++++|...|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE-L-DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-h-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457889999999999999973 2 23356677777778889999999999999998663
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.79 Score=30.81 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 91 KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 91 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
.+-++.+-...+.|+.....+.+.+|-+.+++..|.++|+..+.+ +.+....|..++.
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 333444444556666666666666666666666666666665443 2222225555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.77 E-value=3.9 Score=38.47 Aligned_cols=127 Identities=12% Similarity=0.091 Sum_probs=78.3
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH----
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED---- 96 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~---- 96 (194)
.+...+.+...---++.|..+++...+.|.|++-..++.-.+ ...-.|... +.||-+|++.++..+...+...
T Consensus 1119 ~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1119 LVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCch
Confidence 444555555554556778899999999999999988877665 334344433 6899999999988777655420
Q ss_pred --------HHhcC-------CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 97 --------LKREE-------VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 97 --------m~~~g-------~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.-+.+ +-.++.-|..|-..++..|.+..|.+.-+.. -+..||.-+=.+|...+.
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 00000 0113334455555555555555554443331 245788888888887666
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.7 Score=30.14 Aligned_cols=88 Identities=9% Similarity=0.106 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhc--CC--CCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEI--WY--RPDMFFYRDMLMMLARNKK-VVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~--~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
..++|......+.....+.+++.+..-. .+ ..+..+|.+++++.++..- ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4577888888888888888888884200 11 2456689999999988777 55668899999998999999999999
Q ss_pred HHHHhcCCChHHH
Q 029406 113 IRAFSDSGLPSEA 125 (194)
Q Consensus 113 i~~~~~~g~~~~a 125 (194)
|.++.+....+..
T Consensus 122 i~~~l~g~~~~~~ 134 (145)
T PF13762_consen 122 IKAALRGYFHDSL 134 (145)
T ss_pred HHHHHcCCCCcch
Confidence 9998877444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=4.2 Score=32.14 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=68.5
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
-..|++++|+++|+... +.. +.|.++|--=+-..-..|..-+|++-+....+. +..|...|--+-..|...|++++|
T Consensus 97 Ea~~~~~~A~e~y~~lL-~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLL-EDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHh-ccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 34799999999999998 333 667788876565555667766887776666443 566999999999999999999999
Q ss_pred HHHHHHhHhC
Q 029406 126 MFIYNEMRSS 135 (194)
Q Consensus 126 ~~l~~~M~~~ 135 (194)
.-++++|.-.
T Consensus 174 ~fClEE~ll~ 183 (289)
T KOG3060|consen 174 AFCLEELLLI 183 (289)
T ss_pred HHHHHHHHHc
Confidence 9999998654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.7 Score=37.36 Aligned_cols=129 Identities=10% Similarity=0.088 Sum_probs=87.0
Q ss_pred chhhHHHHHHHH---HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCC
Q 029406 34 LKSDLVSVLAEF---QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-----EVLFD 105 (194)
Q Consensus 34 ~~~~~~~ll~~~---~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~ 105 (194)
.+....+.|.-| -+.+++.+++..|++.+ ..++.-...||..=..+...++|+.|.+-|+...+. ++..+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k--kkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAK--KKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 333333444444 36789999999999997 345556778888888889999999999999877642 11112
Q ss_pred H--HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 106 Q--HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 106 ~--~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
. .+--+++-.-.+ +++..|..++....+- .| -...|-.|-..-.+.|+ .++|.++|++-
T Consensus 502 ~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~-----i~eAielFEks 563 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWK-EDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGK-----IDEAIELFEKS 563 (606)
T ss_pred chhhhhhhHhhhchh-hhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhh-----HHHHHHHHHHH
Confidence 2 222222222223 8888999988887554 23 24678888888888888 88888888754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.9 Score=39.54 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=88.0
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
....+++..|.+-.+.+.+.++-.|-...+-+++ ..|.|..++|..+++.....+.. |..|...+-.+|-+.+..++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3456778899988888875554444333333332 24689999999999988776655 99999999999999999999
Q ss_pred HHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 125 AMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 125 a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
|..+|+..... -|+...-..+..+|.+.+++ -+..+.|.+++.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~y-k~qQkaa~~LyK 138 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSY-KKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 99999986543 57788888888888876663 222345555554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.39 E-value=6.5 Score=33.74 Aligned_cols=129 Identities=8% Similarity=0.034 Sum_probs=105.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+-+-|+-.++.+.|...|+.-.+ +.|. ...|+.|=.=|...++...|.+-++...+-. +.|-..|-.|=.+|.-
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI 410 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH
Confidence 344555567888999999998863 4454 6788888888999999999999999887654 4488899999999999
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
.+...=|.-.|+....-. +-|+..|.+|-++|.+.++ .++|.+.|......|-+
T Consensus 411 m~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~-----~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNR-----LEEAIKCYKRAILLGDT 464 (559)
T ss_pred hcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhcc-----HHHHHHHHHHHHhcccc
Confidence 999999999999876542 4579999999999999999 88888888876555533
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.9 Score=31.58 Aligned_cols=89 Identities=10% Similarity=-0.073 Sum_probs=63.8
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFY-RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
-.+-..|++++|..+|..+. . +.|-..-| ..|=..|-..+.+++|+.+|......+.. |...+=-.-.+|...|+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~-~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLC-I--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHH-H--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 33456899999999999997 3 23433334 44444444468999999999877665532 44445566778899999
Q ss_pred hHHHHHHHHHhHhC
Q 029406 122 PSEAMFIYNEMRSS 135 (194)
Q Consensus 122 ~~~a~~l~~~M~~~ 135 (194)
.+.|..+|....++
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987763
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.5 Score=35.64 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=66.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKE--IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+..-....+++++...+-.++.+ ....|+.. ..+.++.|-+ -++++++.+...=...|+-||..+++.+|..+.+
T Consensus 70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk 147 (418)
T KOG4570|consen 70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLK 147 (418)
T ss_pred hhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHh
Confidence 344444478899999888888622 12333322 2233444432 3588999999888899999999999999999999
Q ss_pred CCChHHHHHHHHHhHhC
Q 029406 119 SGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~ 135 (194)
.+++.+|..+.-.|...
T Consensus 148 ~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 148 KENYKDAASVVTEVMMQ 164 (418)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999998877766443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.25 E-value=4.1 Score=32.62 Aligned_cols=78 Identities=9% Similarity=-0.020 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCCCHHhHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EEVLFDQHTFG 110 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~ty~ 110 (194)
..+..++..+...|+++.+...++.+.. --+-+...|..+|.+|.++|+...|+..|+++.. .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455778888889999999999999973 2234789999999999999999999999988875 68999988877
Q ss_pred HHHHH
Q 029406 111 DIIRA 115 (194)
Q Consensus 111 ~li~~ 115 (194)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77666
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.3 Score=27.46 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhh---cCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKE---IWY-RPD-MFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~-~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
.+..+-..|...|++++|+..|++...- .|- .|+ ..+++.+=..|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667788899999999999998632 221 122 5577888888999999999999998754
|
... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.9 Score=37.76 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVW 94 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 94 (194)
++.+=|+.+.+++++++|.+.-..+. .+.+-|...+.+=+-+..+.+.+++|+.+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil--~~~pdd~~a~~cKvValIq~~ky~~ALk~i 69 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKIL--SIVPDDEDAIRCKVVALIQLDKYEDALKLI 69 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHH--hcCCCcHhhHhhhHhhhhhhhHHHHHHHHH
Confidence 34444555555566666666655554 222333444455555555555566665333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.8 Score=30.27 Aligned_cols=55 Identities=5% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHH
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 130 (194)
...+|..+...+....+..+++.+...+. .+...+|.+|..|++... .+.+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~ 64 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLD 64 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHH
Confidence 45678888888999999999999988873 688899999999998753 44445555
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.2 Score=29.62 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 89 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
++.+-++.+-...+.|+....++.+.+|-+.+++..|.++|+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333334444444555566666666666666666666666665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.052 Score=38.42 Aligned_cols=85 Identities=12% Similarity=0.182 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.+|..+.+.+.+.....+++.+. ..+..-+....|.++..|++.+..++...++... .++. ...++..|-+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~-~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~yd-----~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALV-KENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NNYD-----LDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHH-HTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SSS------CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-hcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--cccC-----HHHHHHHHHhc
Confidence 56777778888888888888887 4555577888899999999998778887777621 1122 23445555555
Q ss_pred CChHHHHHHHHHh
Q 029406 120 GLPSEAMFIYNEM 132 (194)
Q Consensus 120 g~~~~a~~l~~~M 132 (194)
|.++.+.-++..+
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 5555555555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.33 Score=39.35 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
.++..|.+ =++..++.+...-. +.|+-||.++++.+|+.+.+.+++.+|.++...|....
T Consensus 106 ~~irlllk-y~pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 106 TWIRLLLK-YDPQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHc-cChHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34444443 34668888877777 89999999999999999999999999999988877654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=4.5 Score=34.53 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM----FFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
..++.+=..|.+.|++++|+..|+.-.. +.|+. ..|+.+=.+|...|++++|+..+++..+.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3466777788999999999999999763 55763 46899999999999999999999988775
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.83 E-value=5.7 Score=31.88 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=71.6
Q ss_pred HHHHHHHh--cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHH
Q 029406 40 SVLAEFQR--QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAF 116 (194)
Q Consensus 40 ~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~ 116 (194)
.+|..+.. +.....-.++.+.+....+..++..+..++|..+++.+++.+-.++|..-... +..-|...|...|..-
T Consensus 169 lLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li 248 (292)
T PF13929_consen 169 LLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLI 248 (292)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHH
Confidence 34444444 12344456677777666778899999999999999999999999999987765 5566889999999999
Q ss_pred hcCCChHHHHHHHHH
Q 029406 117 SDSGLPSEAMFIYNE 131 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~ 131 (194)
...|+..-...+.++
T Consensus 249 ~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 249 VESGDQEVMRKIIDD 263 (292)
T ss_pred HHcCCHHHHHHHhhC
Confidence 999999886665553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.57 E-value=2.3 Score=37.12 Aligned_cols=104 Identities=13% Similarity=0.004 Sum_probs=79.9
Q ss_pred hcCCHhHHHHHHHHHHh----hcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 47 RQDQVFLCMKLYDVVRK----EIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~----~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
..+.+.+|...|+.-.. ...-.+ -..+++.|=.+|.+.+.+++|+..|++..... +-|..+|.++--.|...|+
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGN 504 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcC
Confidence 46788899888887751 111111 23457777788899999999999999887764 3388899999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
++.|.+.|+.-. ...||-.+-+.++..+..
T Consensus 505 ld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 505 LDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 999999999854 457888888888876653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=6.6 Score=36.64 Aligned_cols=123 Identities=5% Similarity=0.087 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----------
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD---------- 105 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~---------- 105 (194)
..+..|+..+...+++++|.++.+.-.....-.+....|..+ .+.+.+...++..+ .+... +..+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~ 106 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHIC 106 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhh-cccccchhHHHHHH
Confidence 345578999989999999999999776433333344444444 56666666666555 22111 1112
Q ss_pred ---------HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 106 ---------QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 106 ---------~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
...+-.+-.+|-+.|+.+++..+|++..+-. +-|..+.|.+...|... + +++|.+++.
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d-----L~KA~~m~~ 173 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D-----KEKAITYLK 173 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h-----HHHHHHHHH
Confidence 2467778888889999999999999998775 44677777777777766 5 555555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.6 Score=36.13 Aligned_cols=117 Identities=9% Similarity=0.078 Sum_probs=75.1
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFF-YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 126 (194)
...+.-|.++|+-.- .++..-|+.- --++-..+.-...+++++-.+..++..=..-|...|| +..+++..|.+.+|.
T Consensus 336 reHlKiAqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHH
Confidence 345677888887765 4444433221 1223333334457888888888776543443444444 668889999999999
Q ss_pred HHHHHhHhCCCCCChhhHHH-HHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 127 FIYNEMRSSPATPISLPFRV-ILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 127 ~l~~~M~~~g~~p~~~ty~~-ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++|-....-.++ |..+|.. |.++|+.++. .+.|++++-.+
T Consensus 414 elf~~is~~~ik-n~~~Y~s~LArCyi~nkk-----P~lAW~~~lk~ 454 (557)
T KOG3785|consen 414 ELFIRISGPEIK-NKILYKSMLARCYIRNKK-----PQLAWDMMLKT 454 (557)
T ss_pred HHHhhhcChhhh-hhHHHHHHHHHHHHhcCC-----chHHHHHHHhc
Confidence 999776544333 4455554 5578889998 88888876644
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=91.17 E-value=3.7 Score=28.43 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=39.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
++-..|+.++|+.+|++-...|.... ...+-.+-+.|...|++++|..+|+.....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456778888888888777775543 345666667777778888888888776543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.71 E-value=3.5 Score=35.90 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----C-CCCCHHh-HHHHHHHHhcCCChHHHHHHHHHhHh---CCCC
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-----E-VLFDQHT-FGDIIRAFSDSGLPSEAMFIYNEMRS---SPAT 138 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~t-y~~li~~~~~~g~~~~a~~l~~~M~~---~g~~ 138 (194)
.-..++..+-..|...|+++.|..+|..-.+. | ..|...+ -+.+-..|...+++++|..+|+.+.. ..+-
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 34567777999999999999999999876643 3 2334333 33466788888999999999999843 2222
Q ss_pred CC----hhhHHHHHHhhCCCCchHHhHH--HHHhhhccc
Q 029406 139 PI----SLPFRVILKGLIPYPEFREKVK--DDFLELFPD 171 (194)
Q Consensus 139 p~----~~ty~~ll~~~~~~g~~~~~~~--~~a~~~~~~ 171 (194)
++ ..|++.|-..|++.|++.+.-. +.|.+|+++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 33 3567777778999999433222 344445443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.089 Score=37.19 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 130 (194)
.+|..+.+.+.+.....+++.+...+-.-+....+.++..|++.+..++.+.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4577777888899999999999987766789999999999999999888888777
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.39 E-value=5.7 Score=29.26 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHh
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M 132 (194)
+..++..+...|++-+|.++....
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 455555566666666665555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=90.38 E-value=3.2 Score=33.85 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
..+.+..|.-|...|....|.++-.+. .+ |+..-|-.-|.+|+..+++++...+-.. + - .+.=|-.++..
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k-K--sPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS---K-K--SPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C-C--CCCChHHHHHH
Confidence 446677788888999999998886655 44 6999999999999999999986654322 2 2 24778889999
Q ss_pred hCCCCchHHhHHHHHhhhccc
Q 029406 151 LIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~~ 171 (194)
|.+.|. ...|..+.+.
T Consensus 247 ~~~~~~-----~~eA~~yI~k 262 (319)
T PF04840_consen 247 CLKYGN-----KKEASKYIPK 262 (319)
T ss_pred HHHCCC-----HHHHHHHHHh
Confidence 999998 7777777664
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH | Back alignment and domain information |
|---|
Probab=90.07 E-value=4.9 Score=30.13 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029406 4 ESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR 83 (194)
Q Consensus 4 ~a~~vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 83 (194)
+|+.++..+++.-+.++.+...++..... ..+-.|.++|.+++|.+++++.-. .|+......-+....+
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~lik~-------~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~ 155 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLIKE-------QAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHH
Confidence 46777777777666666555555444332 445567788888999888888862 3555555554444444
Q ss_pred CC
Q 029406 84 NK 85 (194)
Q Consensus 84 ~g 85 (194)
.+
T Consensus 156 ~K 157 (200)
T cd00280 156 EK 157 (200)
T ss_pred cc
Confidence 43
|
Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.05 E-value=9 Score=33.19 Aligned_cols=126 Identities=12% Similarity=0.088 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
|+.+-..|....+..+.++.|+.-.+-..-.||++.... .++.-.+++++|..=|++...-. +-+...|-.+--+.-
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg--Qm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG--QMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH--HHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHH
Confidence 666667788888888899999888643344455554443 33444567889988888776543 125556777767777
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
|.+.++.++..|++-+.+ ++--+..|+.....+-..++ ++.|.+-++.-
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqq-----Fd~A~k~YD~a 488 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQ-----FDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHh-----HHHHHHHHHHH
Confidence 888999999999998776 55556777777777777776 55555555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=89.83 E-value=5.6 Score=31.60 Aligned_cols=127 Identities=10% Similarity=0.045 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh--hcCCCCC--HHHHHHHHHHHHhC-CCHHHHHHHHHHHHh----cCCCC--CH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRK--EIWYRPD--MFFYRDMLMMLARN-KKVVEAKQVWEDLKR----EEVLF--DQ 106 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~p~--~~~~~~li~~~~~~-g~~~~a~~l~~~m~~----~g~~p--~~ 106 (194)
+.....+|-+ .++++|+..|+.-.. ...-.|+ ..++..+=..|-.. |++++|+..|.+..+ .| .+ -.
T Consensus 78 ~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~ 155 (282)
T PF14938_consen 78 YEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAA 155 (282)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHH
Confidence 3344444433 377777777666531 0111222 33555556667666 788888888877663 23 21 23
Q ss_pred HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCC-----CCh--hhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPAT-----PIS--LPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 107 ~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~-----p~~--~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.++..+...+.+.|++++|..+|++....-.. ++. ..+.++|-.+ ..|| .-.|.+.++..
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L-~~~D-----~v~A~~~~~~~ 222 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL-AMGD-----YVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH-HTT------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH-HcCC-----HHHHHHHHHHH
Confidence 56788889999999999999999988654322 122 2234444333 4577 55555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=8.5 Score=30.01 Aligned_cols=130 Identities=8% Similarity=0.029 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--C---------------CC---HHHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR--N---------------KK---VVEAKQVW 94 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~---------------g~---~~~a~~l~ 94 (194)
......+..++.+.+++++|...|+...+...-.|+. -|...+.+.+. . .+ ..+|+.-|
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~ 147 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF 147 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence 3445567788889999999999999998655555554 33344444331 1 11 34566666
Q ss_pred HHHHhc----CCCCCHHhHH------------HHHHHHhcCCChHHHHHHHHHhHhC--CCCCChhhHHHHHHhhCCCCc
Q 029406 95 EDLKRE----EVLFDQHTFG------------DIIRAFSDSGLPSEAMFIYNEMRSS--PATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 95 ~~m~~~----g~~p~~~ty~------------~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~ll~~~~~~g~ 156 (194)
+.+.+. ...|+....- .+..-|.+.|.+..|..=|+.+.++ +.+......-.+..+|...|.
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 666543 2333332211 3345588888888888888888765 333445566677788888888
Q ss_pred hHHhHHHHHhhhcc
Q 029406 157 FREKVKDDFLELFP 170 (194)
Q Consensus 157 ~~~~~~~~a~~~~~ 170 (194)
.+.|.....
T Consensus 228 -----~~~a~~~~~ 236 (243)
T PRK10866 228 -----NAQADKVAK 236 (243)
T ss_pred -----hHHHHHHHH
Confidence 666655443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.05 E-value=5.7 Score=34.70 Aligned_cols=87 Identities=9% Similarity=0.165 Sum_probs=64.4
Q ss_pred HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCCChHHHHHHH
Q 029406 51 VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIY 129 (194)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~ 129 (194)
.+.....++.......+.|+ .+|...|+.--|..-.+.|..+|.+..+.+..+ ++..++++|.-||. ++..-|+.+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 45556667777644444444 467778888888888999999999999988877 77888888888774 6788899999
Q ss_pred HH-hHhCCCCC
Q 029406 130 NE-MRSSPATP 139 (194)
Q Consensus 130 ~~-M~~~g~~p 139 (194)
+. |+..|-.|
T Consensus 425 eLGLkkf~d~p 435 (656)
T KOG1914|consen 425 ELGLKKFGDSP 435 (656)
T ss_pred HHHHHhcCCCh
Confidence 86 44445443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.80 E-value=9 Score=35.46 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHh-cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 35 KSDLVSVLAEFQR-QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 35 ~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
...+......|.. .|+.+.|+.+|+.-+. |-++++..|-.|+.++|-++-++ .| |....-.|-
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhla 974 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLA 974 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHH
Confidence 3445555555655 5777777777777652 44555555555666655554432 22 333444444
Q ss_pred HHHhcCCChHHHHHHHHH
Q 029406 114 RAFSDSGLPSEAMFIYNE 131 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~ 131 (194)
+-|-..|++.+|..+|..
T Consensus 975 R~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 444455555555544443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=88.69 E-value=12 Score=30.58 Aligned_cols=98 Identities=3% Similarity=-0.052 Sum_probs=63.8
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKV--VEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
++.+++.+++.+.. . .+-+...|+.--..+.+.|.. ++++.+++++.+..-+ |..+|+..-..+.+.|++++++.
T Consensus 87 ~l~eeL~~~~~~i~-~-npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 87 DLEEELDFAEDVAE-D-NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred hHHHHHHHHHHHHH-H-CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHH
Confidence 56788888888762 2 223444566554445555543 6678888777766533 77788888888888888888888
Q ss_pred HHHHhHhCCCCCChhhHHHHHHhh
Q 029406 128 IYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 128 l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.++++.+.... |...|+.....+
T Consensus 164 ~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 164 YCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHCCC-chhHHHHHHHHH
Confidence 88888776433 344454444333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.45 E-value=7.9 Score=28.27 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM---FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
-++.++..-.+.++.+++..+++-++- .+|.. .++-.. .+.+.|++.+|.++|+.+...+ |..- |..-+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p-~~kAL 83 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFP-YAKAL 83 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCCh-HHHHH
Confidence 355566666778899999999999984 45543 344443 4567899999999999987664 3333 44444
Q ss_pred HHHhcCCChHHHHHHHHH-hHhCCCCCChh
Q 029406 114 RAFSDSGLPSEAMFIYNE-MRSSPATPISL 142 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~-M~~~g~~p~~~ 142 (194)
-++|-...-+..++.+-. +.+.+-.|+..
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a~ 113 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGADPDAR 113 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCChHHH
Confidence 445555445555555544 56665555543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.33 E-value=5.4 Score=26.62 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+-++.+. ...+.|+.....+.+++|-|.+++.-|.++|+..+... ..+...|..++.
T Consensus 25 e~rr~mN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLF-GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 4445555555 67888999999999999999999999999999877432 113445665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.25 E-value=1 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=19.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
+|+.|-..|.+.|++++|..+|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888888888888888888874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.00 E-value=13 Score=33.29 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCH--HhHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKE-----IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQ--HTFG 110 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~--~ty~ 110 (194)
..|.-+++.+++++|-+.+....++ ...+.+...|+.+-+..+++.+.-..+.+= .+.+.| .-||. ..|+
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd-aiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD-AIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH-HHHHhhcccCcHHHHHHHH
Confidence 4566666667777766666665321 122334555666666666554433332221 111222 22444 3577
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
+|..=|.+.|.+++|-++|++-..+ ..+..-|+.+.+.|.+
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 7777777777777777777765544 2345566667777664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.79 E-value=3.9 Score=36.78 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
|--..-..+-..+...|....|..+|++. .+|.-+|-+|+..|..++|..+..+-.++ +||+.-|.++.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33344456777888889999999999966 35788899999999999999998887773 78999999998
Q ss_pred HhhCCCCchHHhHHHHHhhhcccc
Q 029406 149 KGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+......- .+.|.++++..
T Consensus 465 Dv~~d~s~-----yEkawElsn~~ 483 (777)
T KOG1128|consen 465 DVLHDPSL-----YEKAWELSNYI 483 (777)
T ss_pred hhccChHH-----HHHHHHHhhhh
Confidence 88765444 77788877654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.76 E-value=8.5 Score=27.82 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..++..-...++++++..+++.|+--+.-.|...+|-..| +...|++.+|.++|+...+.+..+ .|..-+-++|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~C 87 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKALLALC 87 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHH
Confidence 34444444558999999999999984222223344555444 567899999999999998775332 4677777777
Q ss_pred cCCChHHHHHHHH-HhHhCCCCCChhhH
Q 029406 118 DSGLPSEAMFIYN-EMRSSPATPISLPF 144 (194)
Q Consensus 118 ~~g~~~~a~~l~~-~M~~~g~~p~~~ty 144 (194)
-.-.-|-.++.+- .+.+.|-.|+....
T Consensus 88 L~al~Dp~Wr~~A~~~le~~~~~~a~~L 115 (153)
T TIGR02561 88 LNAKGDAEWHVHADEVLARDADADAVAL 115 (153)
T ss_pred HHhcCChHHHHHHHHHHHhCCCHhHHHH
Confidence 7766666666444 35556555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=87.69 E-value=17 Score=31.77 Aligned_cols=80 Identities=14% Similarity=-0.034 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
.+...|..+=-.....|++++|...+++..... |+...|..+-..|...|+.++|.+.+..... ..|...||...=
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~~~ 493 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYWIE 493 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHHHH
Confidence 344556555444445689999999999887765 6888899999999999999999998887543 345555665444
Q ss_pred HhhC
Q 029406 149 KGLI 152 (194)
Q Consensus 149 ~~~~ 152 (194)
+.-+
T Consensus 494 ~~~f 497 (517)
T PRK10153 494 NLVF 497 (517)
T ss_pred hccc
Confidence 4433
|
|
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=87.16 E-value=5.7 Score=25.90 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 90 AKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 90 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
+.++++.+.+.|+- +....+.+-.+--..|+.+.|..++.... +| +..|..++.++...|+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEH 81 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCc
Confidence 44566666666633 44455555555456677777777777766 43 3556677777766666
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.06 E-value=14 Score=29.73 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=70.6
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCCChH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~ 123 (194)
.+.+++.+|+..|.+-.+ +.| |.+.|.-==-+|++.|.++.|++=...-... .| ...+|..|=.+|...|++.
T Consensus 92 m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 457788888888888863 455 5666666677888899988887766655443 23 3467888888999999999
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.|.+.|..-.+ +.|+-.+|..=|...
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 99888877543 456666666555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.91 E-value=3.8 Score=35.10 Aligned_cols=121 Identities=12% Similarity=0.037 Sum_probs=68.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCCCCHH-hHHHHHHHHh
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIW-YRPDMFFYRDMLMMLARNKKVVEAKQVWED-LKREEVLFDQH-TFGDIIRAFS 117 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~-m~~~g~~p~~~-ty~~li~~~~ 117 (194)
.|+...+..-+..|..+|-+.++ .+ +.++++.++++|..+| .|+..-|..+|+- |+.. ||.. --+-.+.-+.
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fLi 477 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHHHHH
Confidence 45555555566677777777763 44 5567777777777665 3445666666652 2222 2332 2344555556
Q ss_pred cCCChHHHHHHHHHhHhCCCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.-++-..|..+|+.-..+ +.-+ ...|.-+|.--..-|+ ...+..+-+.|
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~-----lN~v~sLe~rf 528 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGS-----LNNVYSLEERF 528 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcc-----hHHHHhHHHHH
Confidence 667777777777743322 1111 3567777776666666 55555554444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.88 E-value=12 Score=28.49 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---VLFDQHTFGDIIR 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~ty~~li~ 114 (194)
-..+-.++.+.|+..+|...|++-. .--+--|....-.+-++-...+++..|...++.+-+.. -.|| +.-.+-.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR 168 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFAR 168 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHH
Confidence 3456666667777777777777765 23333455555555566666677777777776665543 2233 3334455
Q ss_pred HHhcCCChHHHHHHHHHhHhC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.|.-.|.+.+|..-|+...+.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHh
Confidence 566666676676666666543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=86.62 E-value=15 Score=32.75 Aligned_cols=94 Identities=9% Similarity=0.070 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF-FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+...+-+.|+++.|....+.-. +-.|+.+ .|-.==+.+..+|..++|..++++..+.. .||...=+--..=..+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 35556666788888887777765 2334432 22222366777788888888887776554 2354433345555567
Q ss_pred CCChHHHHHHHHHhHhCCC
Q 029406 119 SGLPSEAMFIYNEMRSSPA 137 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~ 137 (194)
+++.++|..+.......|.
T Consensus 452 An~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccccHHHHHHHHHhhhccc
Confidence 7888888887777766665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=86.32 E-value=15 Score=29.17 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=80.7
Q ss_pred HHHHHHHHHhc-CCHhHHHHHHHHHHh---hcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-----CCCH
Q 029406 38 LVSVLAEFQRQ-DQVFLCMKLYDVVRK---EIWYRP--DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-----LFDQ 106 (194)
Q Consensus 38 ~~~ll~~~~~~-~~~~~a~~~~~~m~~---~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-----~p~~ 106 (194)
+..+-..|-.. |+++.|++.|++-.+ ..+ .+ -..++..+...+.+.|++++|..+|++...... +++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33455555566 799999999888752 222 22 144667788899999999999999999876432 2233
Q ss_pred H-hHHHHHHHHhcCCChHHHHHHHHHhHhC--CCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 107 H-TFGDIIRAFSDSGLPSEAMFIYNEMRSS--PATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 107 ~-ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
. .|-..+-++...|+...|...|+..... ++..+ ......||.+|- .|+ . ..++.+..=|+.+..
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D-~-e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGD-V-EAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT--C-CCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCC-H-HHHHHHHHHHcccCc
Confidence 2 2334455777789999999999997654 44322 456666777774 444 1 124444444554433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=86.20 E-value=6.2 Score=36.01 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 95 (194)
|-.+-+.|+..|+++.|.++|-+-- .++-.|.+|.++|.+++|.++-.
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHH
Confidence 3345566666677777776665442 23556667777777777766543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.03 E-value=9.1 Score=27.38 Aligned_cols=93 Identities=10% Similarity=0.054 Sum_probs=54.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHhcC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~ 119 (194)
-....+.|++..|.+.|+.+..+....| ....--.|+.+|.+.+++++|...++++.+.. -.|+ +-|-..+.|++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344567777888888887764443333 34455667777777888888877777776643 3333 2244444443332
Q ss_pred CC-----------------hHHHHHHHHHhHhC
Q 029406 120 GL-----------------PSEAMFIYNEMRSS 135 (194)
Q Consensus 120 g~-----------------~~~a~~l~~~M~~~ 135 (194)
.. ...|+.-|+.....
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 21 45666666666544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.68 E-value=6.5 Score=29.10 Aligned_cols=64 Identities=13% Similarity=-0.023 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ--HTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
...+..+-..|++.|+.++|++.|.++......|.. .++-.+|....-.+++..+.....+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346778889999999999999999999987766544 4688899999999999999888877643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=85.56 E-value=24 Score=30.88 Aligned_cols=119 Identities=10% Similarity=0.025 Sum_probs=78.4
Q ss_pred CHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhC----C----CHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhcC
Q 029406 50 QVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARN----K----KVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~----g----~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~ 119 (194)
....|..+|++..+ ..|+ ...|..+-.++... . ....+.+...+.... ....+...|.++--.+...
T Consensus 357 ~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 357 SLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 46789999999873 4465 33444332222221 1 122333333332222 2344557788776666678
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
|++++|...+++....+ |+...|..+-..+...|+ .++|.+.+......+|.
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~-----~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGD-----NRLAADAYSTAFNLRPG 485 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCC
Confidence 99999999999988775 688899999999999999 88888887765554444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.53 E-value=8.9 Score=25.87 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+-++.+. ...+.|+.....+.+++|.|.+++.-|.++|+..+... .+....|.-++.
T Consensus 28 e~rrglN~l~-~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLF-GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHT-TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHh-ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 3444555555 67889999999999999999999999999999887542 112226666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.30 E-value=15 Score=32.24 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHH
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 131 (194)
....++|-.+-.+.+-.+|...++.|=-.|.-.|.+++|.+.|+...... +-|..+||-|=..++...+..+|+..|++
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 34445555554366655666666666667778899999999999886542 33778999999999999999999999999
Q ss_pred hHhCCCCCCh-hhHHHHHHhhCCCCchHHhHH
Q 029406 132 MRSSPATPIS-LPFRVILKGLIPYPEFREKVK 162 (194)
Q Consensus 132 M~~~g~~p~~-~ty~~ll~~~~~~g~~~~~~~ 162 (194)
..+- .|.. .+...|--+|...|.+++++.
T Consensus 490 ALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 490 ALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 7653 5552 344444445667777544433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=84.66 E-value=15 Score=31.76 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=77.3
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHhcCCChH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM-MLARNKKVVEAKQVWEDLKREE---VLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~~ 123 (194)
....+.|.++++.++. --|+...|...-. .+...|++++|++.|+...... -+.....|--+.-+++-.++++
T Consensus 246 ~~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 4567889999999973 3367666655443 3444799999999999755321 2335566777778889999999
Q ss_pred HHHHHHHHhHhC-CCCCChhhHHHHHHh-hCCCCch--HHhHHHHHhhhcccc
Q 029406 124 EAMFIYNEMRSS-PATPISLPFRVILKG-LIPYPEF--REKVKDDFLELFPDM 172 (194)
Q Consensus 124 ~a~~l~~~M~~~-g~~p~~~ty~~ll~~-~~~~g~~--~~~~~~~a~~~~~~m 172 (194)
+|...|..+.+. .+.+- +|..+.-+ +...|+. .+...++|.++|.+.
T Consensus 323 ~A~~~f~~L~~~s~WSka--~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKA--FYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHhccccHHH--HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 999999999764 55433 33333322 2244441 111226666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.64 E-value=15 Score=27.85 Aligned_cols=108 Identities=12% Similarity=-0.000 Sum_probs=80.6
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC-
Q 029406 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP- 136 (194)
Q Consensus 58 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g- 136 (194)
+.+..+...+-|++..-..|=.+..+.|+..+|...|.+-..--+--|..+.-.+-++....+++..|..+++.+-+..
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3344335557799999899999999999999999999998665577799999999999999999999999999876543
Q ss_pred --CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 137 --ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 137 --~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
-.|| +.-.+-+.+...|. ...|+.-|+..
T Consensus 156 a~r~pd--~~Ll~aR~laa~g~-----~a~Aesafe~a 186 (251)
T COG4700 156 AFRSPD--GHLLFARTLAAQGK-----YADAESAFEVA 186 (251)
T ss_pred ccCCCC--chHHHHHHHHhcCC-----chhHHHHHHHH
Confidence 2344 33344455666666 55455555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=84.64 E-value=20 Score=29.22 Aligned_cols=65 Identities=8% Similarity=0.016 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+.++.+++.+.+ .-+-|-..|+..-.++.+.|.++++++.++++.+.+.. |...|+.....+.+.
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 456666666652 12235667777777777777777777777777776644 556666666555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.24 E-value=13 Score=26.62 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-C-CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-V-LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~-~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
...|..-...+ +.|++++|...|+.+...= . +-....--.|+.+|.+.++++.|...++...+
T Consensus 11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444443 4556666666666665421 1 11334455566666666666666666665443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.18 E-value=14 Score=29.30 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=25.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-CCCCCH-HhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKRE-EVLFDQ-HTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
|-..+...|++++|-.+|..+.+. +-.|.. .++--|-.+..+.|+.+.|-.+|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444555555555555544432 111111 2333444444445555555555554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=83.44 E-value=3.8 Score=21.47 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
+|+.|=..|.+.|++++|..+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677888888888888887743
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.26 E-value=21 Score=28.31 Aligned_cols=108 Identities=12% Similarity=0.150 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC-CCCCCh-hhH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PATPIS-LPF 144 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~-~ty 144 (194)
...|+.-+..| +.|++..|.+-|....+.. +.||..-| |-.++...|+++.|-.+|..+.+. +-.|.. .+.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 44699999888 7778999999999988642 55665544 778899999999999999998764 333433 344
Q ss_pred HHHHHhhCCCCchHHhHHHHHhhhcccc-cccCCchhhhhhhh
Q 029406 145 RVILKGLIPYPEFREKVKDDFLELFPDM-IVYDPPEDLFEDQE 186 (194)
Q Consensus 145 ~~ll~~~~~~g~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~ 186 (194)
--|-.+..+.|+ .+.|...|++. +.|+-++-..-..+
T Consensus 219 lKlg~~~~~l~~-----~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 219 LKLGVSLGRLGN-----TDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHHHHHHhcC-----HHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 445556667788 88899888886 45665555444433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.98 E-value=3.5 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 106 ~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
..+++.|-..|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3567777888888888888888877753
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.97 E-value=8.3 Score=31.07 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=67.5
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHH
Q 029406 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFRE 159 (194)
Q Consensus 81 ~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~ 159 (194)
..+.+++.+|+..|.+..+.. +-|.+-|..=-.+|++.|.++.|++=-+.-.. +.|. ..+|.-|=.+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk--- 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK--- 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc---
Confidence 457899999999999988764 34888999999999999999998874444322 2343 4688888888999999
Q ss_pred hHHHHHhhhcccccccCCc
Q 029406 160 KVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 160 ~~~~~a~~~~~~m~~~~~~ 178 (194)
...|.+.|+......|-
T Consensus 165 --~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 165 --YEEAIEAYKKALELDPD 181 (304)
T ss_pred --HHHHHHHHHhhhccCCC
Confidence 77777776655444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=82.64 E-value=8.3 Score=28.31 Aligned_cols=93 Identities=9% Similarity=-0.035 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCC-CCChhhHHHHHHhh
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA-TPISLPFRVILKGL 151 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~ll~~~ 151 (194)
.|..--+.| ..|++++|..+|.-+...+.- |..-|..|-.+|-..+.++.|..+|...-.-+. .|.+..|. -.++
T Consensus 40 iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a--gqC~ 115 (165)
T PRK15331 40 LYAHAYEFY-NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT--GQCQ 115 (165)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH--HHHH
Confidence 344444444 689999999999998876533 555567777777777999999999997644332 24443333 3466
Q ss_pred CCCCchHHhHHHHHhhhcccccc
Q 029406 152 IPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 152 ~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
...|+ ...|...|.....
T Consensus 116 l~l~~-----~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRK-----AAKARQCFELVNE 133 (165)
T ss_pred HHhCC-----HHHHHHHHHHHHh
Confidence 67788 7777777775544
|
|
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.57 E-value=4.8 Score=22.92 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=16.7
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+.|-+.++..+++.|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44444555555555555555555555554443
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.37 E-value=5.7 Score=21.74 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
|..+-..|...|++++|.++|+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
|
|
| >PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF | Back alignment and domain information |
|---|
Probab=82.11 E-value=1.6 Score=30.86 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=23.5
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
-+.|.-.+|+.+|..|.++|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677888888888888888874 56665543
|
The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=81.92 E-value=24 Score=30.46 Aligned_cols=135 Identities=14% Similarity=0.096 Sum_probs=90.5
Q ss_pred hchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCC
Q 029406 33 LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM-----FFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVL 103 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~ 103 (194)
++|+.+..++..++=.|+=+.+++.+..-.+..+++-.. -.|+.++..++- ....+.|.+++..+... -
T Consensus 186 lLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y 263 (468)
T PF10300_consen 186 LLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y 263 (468)
T ss_pred hCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C
Confidence 456777788999988999999999988886555665433 356666665554 35678899999998765 6
Q ss_pred CCHHhHHHHHHHH-hcCCChHHHHHHHHHhHhC--CCC-CChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 104 FDQHTFGDIIRAF-SDSGLPSEAMFIYNEMRSS--PAT-PISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 104 p~~~ty~~li~~~-~~~g~~~~a~~l~~~M~~~--g~~-p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|+...|.-.-.-+ ...|++++|.+.|+..... .++ .....|--+.-.+.-..+ +++|.+.|..+..
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-----w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-----WEEAAEYFLRLLK 333 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-----HHHHHHHHHHHHh
Confidence 7877775554433 4459999999999976542 222 122333333344445566 7777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.77 E-value=8.2 Score=34.56 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
..+++-+.-..+.+=.-++..-+.-|| ...|++|-+.|.+.|++++|.++|.+-... ..++.-|+.+.++|+..
T Consensus 219 lis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHH
Confidence 334444444444444444311122345 457888888888888888888888876554 23444566666666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.61 E-value=28 Score=28.52 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHhc--------------
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRD--MLMMLARNKKVVEAKQVWEDLKRE-------------- 100 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~l~~~m~~~-------------- 100 (194)
.+..+-.||-...++..|-..|+++- + ..|-..-|.. .=+ +-+.+.+.+|+++...|...
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~-q--l~P~~~qYrlY~AQS-LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLG-Q--LHPELEQYRLYQAQS-LYKACIYADALRVAFLLLDNPALHSRVLQLQAAI 121 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-h--hChHHHHHHHHHHHH-HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34445555666778888888888875 2 3343333321 112 22445566666665555321
Q ss_pred ----CCCC-------------CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC-CCCCChhhHHHHHHhhCCCCchHHhHH
Q 029406 101 ----EVLF-------------DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVK 162 (194)
Q Consensus 101 ----g~~p-------------~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~ll~~~~~~g~~~~~~~ 162 (194)
+--| +..+.+..--...+.|.++.|.+-|+...+. |+.| ...||.-+-.| +.|+ .
T Consensus 122 kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~q-----y 194 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQ-----Y 194 (459)
T ss_pred hcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhh-----H
Confidence 1001 2222222222344678999999999987664 6665 56788877776 4566 6
Q ss_pred HHHhhhcccccc
Q 029406 163 DDFLELFPDMIV 174 (194)
Q Consensus 163 ~~a~~~~~~m~~ 174 (194)
..|.+...++..
T Consensus 195 asALk~iSEIie 206 (459)
T KOG4340|consen 195 ASALKHISEIIE 206 (459)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=81.60 E-value=26 Score=28.20 Aligned_cols=89 Identities=9% Similarity=0.041 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCHhHHHHH-HHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 39 VSVLAEFQRQDQVFLCMKL-YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~-~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+-=|.+++.-++|.++... ++.......++| ...-..|-.|.+.+.+..++++-.......-.-+...|.++...|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3458899999999887654 333322223444 4445566778899999999888877665432224445999888887
Q ss_pred cC-----CChHHHHHHH
Q 029406 118 DS-----GLPSEAMFIY 129 (194)
Q Consensus 118 ~~-----g~~~~a~~l~ 129 (194)
.+ |.+++|.++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 76 9999988876
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.60 E-value=23 Score=29.76 Aligned_cols=106 Identities=12% Similarity=-0.011 Sum_probs=70.3
Q ss_pred HHHhcCCHhHHHHHHHHHHhh----cCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHH
Q 029406 44 EFQRQDQVFLCMKLYDVVRKE----IWY---------RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~----~~~---------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 110 (194)
.+.+.|++.+|..-|+...+- .+. ..-..+++-+.-.|.+.+.+.+|+...++....+ ++|....=
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 355677777777776663211 111 1234566777778888999999999888887764 33555554
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
-==.+|...|+++.|...|+.+.+. .|+-..-+.=|..|.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 5556778889999999999998765 455455444444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.58 E-value=25 Score=27.93 Aligned_cols=62 Identities=16% Similarity=-0.073 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCHH---HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 73 FYRDMLMMLARNKKVV---EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~---~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+...+..+|...+..+ +|..+.+.+... +.-...+|-.-|..+.+.++.+.+.+.+..|..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555544433 333344444222 1112334444455555556666666666666554
|
It is also involved in sporulation []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.44 E-value=18 Score=31.28 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHhcCCChHHHHHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 131 (194)
-=+..|...|+..-+..-.+.|..+|.+..+.| +.+++..|++.|.-++ .|+...|..+|+.
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifel 457 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFEL 457 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHH
Confidence 346788889999988888999999999999999 7789999999999876 4677888898886
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.99 E-value=20 Score=28.78 Aligned_cols=103 Identities=7% Similarity=0.002 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhcC---CChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSDS---GLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~---g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
|...|-.|=..|.+.|++..|..=|..-.+- |- |...+..+-.++... ..-.++..+|+++.... +-|..+-.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 5666777777777777777777766655442 22 233333333332222 23356666777765542 23445555
Q ss_pred HHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 146 VILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 146 ~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
.|-..+...|+ ..+|...++.|....||.+
T Consensus 232 lLA~~afe~g~-----~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGD-----YAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHccc-----HHHHHHHHHHHHhcCCCCC
Confidence 55566666677 6666666666666666555
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.98 E-value=6 Score=25.29 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhcCCChHHHHH
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~ 127 (194)
.+..| ...+.++|+..|....+.-..|. -.+++.++.+|+.-|++.+++.
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 55667777777776665433322 1467777777777777777666
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
Probab=80.78 E-value=11 Score=34.05 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhCCCHH------HHHHHHHHHHhcCCCCCHHh
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRK-EIWYRPDMFFYRDMLMMLARNKKVV------EAKQVWEDLKREEVLFDQHT 108 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~~~~~~g~~~------~a~~l~~~m~~~g~~p~~~t 108 (194)
++-.+++.+|..+|++..+.++++.+.. ..|-+.-...||..|+-..+.|.++ .|..++++.. +.-|..|
T Consensus 29 ~~~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t 105 (1117)
T COG5108 29 SGTASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLT 105 (1117)
T ss_pred cchHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchH
Confidence 4455899999999999999999888852 2244445678888888888888753 3333333332 4457778
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHh
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M 132 (194)
|..++.+-..--.-.-+.-++.+.
T Consensus 106 ~all~~~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 106 YALLCQASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred HHHHHHhhcChHhHHhccHHHHHH
Confidence 887777655533333444444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.64 E-value=45 Score=30.31 Aligned_cols=85 Identities=7% Similarity=-0.080 Sum_probs=54.3
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
+|..+.-..+|+... ..++-....|-..-+-+...|++..|..++.+..+..=. +...|-+.+...+.+..++.|..
T Consensus 563 hgt~Esl~Allqkav--~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 563 HGTRESLEALLQKAV--EQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred cCcHHHHHHHHHHHH--HhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHH
Confidence 455555555666554 223334555555556666677777777777766654322 56677777777777888888888
Q ss_pred HHHHhHhC
Q 029406 128 IYNEMRSS 135 (194)
Q Consensus 128 l~~~M~~~ 135 (194)
+|.+.+..
T Consensus 640 llakar~~ 647 (913)
T KOG0495|consen 640 LLAKARSI 647 (913)
T ss_pred HHHHHhcc
Confidence 88776654
|
|
| >KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.59 E-value=33 Score=30.43 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHhcCCch-------hHHHHHHHHhhhhch-hhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 029406 1 MSKESLMVAKELKRLQSHPV-------RFDRFIKSHVSRLLK-SDLVSVLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 1 ~~~~a~~vi~~l~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
+|.+|-++|..|++-..+.+ ++++.++-+.+.+.- .|...+|.+|.+-+.-.+=.++|+++.
T Consensus 130 ~~qe~kslWEkLR~k~~~ke~R~klv~el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~ 199 (652)
T KOG2050|consen 130 ISQEAKSLWEKLRRKTTPKEERDKLVSELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELL 199 (652)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 36788999999998888543 566666666655543 678889999999999999999999997
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.50 E-value=16 Score=27.11 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
..+.......+.+...+..+...+. ...|+..+|..++..+...|+.++|.++.+++.
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444444443332 245566666666666666666666655555554
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.44 E-value=12 Score=26.33 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 89 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+..+-++.+....+.|+.....+.+++|-+.+++..|.++|+..+.+ +.+.-..|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 44555566667788899999999999999999999999999888765 3333334655544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.34 E-value=6.3 Score=20.67 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
.+++.|=..|...|++++|..++.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888999999888887764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=80.05 E-value=40 Score=29.40 Aligned_cols=75 Identities=5% Similarity=0.048 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRA 115 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~ 115 (194)
+-.++-+.|+.++|++.|.+|.+.....-+......||..+-..+.+.++..++.+-.+-..+. =..+|++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3334445799999999999996433322245567778999999999999999999874332222 23457776543
|
The molecular function of this protein is uncertain. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 194 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.93 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.86 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.35 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.33 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.71 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.7 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.68 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.67 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.63 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.62 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.59 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.55 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.55 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.53 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.48 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.46 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.44 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.43 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.4 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.38 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.37 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.37 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.35 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.35 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.35 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.32 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.32 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.31 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.29 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.28 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.28 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.26 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.25 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.25 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.24 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.24 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.2 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.18 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.16 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.15 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.14 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.14 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.11 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.11 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.1 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.08 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.07 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.05 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.98 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.96 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.96 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.96 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.94 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.94 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.93 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.91 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.89 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.89 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.87 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.82 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 97.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.77 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.77 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.77 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.77 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.76 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.76 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.75 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.74 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.72 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.7 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.69 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.69 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.65 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.64 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.63 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.63 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.63 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 97.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.54 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.52 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.5 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.48 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.46 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 97.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.43 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.43 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.39 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.35 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.33 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.32 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.3 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.3 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.3 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.29 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.29 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.24 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.23 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.23 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.21 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.17 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.15 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.13 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.07 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.07 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.07 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.05 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.03 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.03 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.03 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.0 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 96.99 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.95 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 96.94 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 96.94 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.93 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.92 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 96.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 96.84 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 96.83 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 96.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.72 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 96.65 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 96.59 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.57 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.55 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.54 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.5 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 96.5 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 96.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 96.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.43 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.22 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 96.13 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.12 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.05 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 95.99 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 95.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 95.77 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 95.76 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 95.64 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 95.51 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 95.43 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 95.31 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 94.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 94.69 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 94.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 94.57 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 94.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.34 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.31 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 94.29 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.03 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.66 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 93.64 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 93.59 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.07 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 93.03 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 92.7 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.97 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.82 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 91.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 91.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 91.36 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 91.14 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 90.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.27 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 90.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 89.37 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.34 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.36 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 86.88 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 86.24 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 85.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 85.49 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 85.3 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 84.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 83.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 83.39 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.05 | |
| 3bu8_A | 235 | Telomeric repeat-binding factor 2; TRF2 TRFH domai | 82.52 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 82.38 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.16 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 82.15 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.51 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 81.21 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.08 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 80.69 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 80.44 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=213.85 Aligned_cols=152 Identities=10% Similarity=0.042 Sum_probs=126.0
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHhcCC---------HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 029406 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQ---------VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQ 92 (194)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 92 (194)
+...|....-.+....|+++|.+|++.+. ++.|.++|++|+ ..|+.||..|||+||.+|++.|++++|.+
T Consensus 48 lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~ 126 (501)
T 4g26_A 48 LYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFD 126 (501)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 44444444444555678888888887654 677888999998 78889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 93 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|+ .++|.++|++|
T Consensus 127 l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~-----~d~A~~ll~~M 201 (501)
T 4g26_A 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN-----ADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC-----HHHHHHHHHHH
Confidence 9999998899999999999999999999999999999999888999999999999999998888 88889999988
Q ss_pred cccCCch
Q 029406 173 IVYDPPE 179 (194)
Q Consensus 173 ~~~~~~~ 179 (194)
...+..+
T Consensus 202 r~~g~~p 208 (501)
T 4g26_A 202 RDLVRQV 208 (501)
T ss_dssp HHHTSSB
T ss_pred HHhCCCc
Confidence 7655443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-29 Score=210.25 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=133.9
Q ss_pred CchhHHHHHHHHhhhhch-hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC---------H
Q 029406 18 HPVRFDRFIKSHVSRLLK-SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK---------V 87 (194)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---------~ 87 (194)
+.+.+.+.++.......+ ..+..+|++|++.|++++|+++|++|+ +.|+.||..|||+||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 334555555555444444 346788999999999999999999999 79999999999999999998765 7
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhh
Q 029406 88 VEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE 167 (194)
Q Consensus 88 ~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~ 167 (194)
++|.++|++|...|+.||..|||+||.+|++.|++++|..+|++|.+.|+.||..||++||.+|++.|+ .+.|.+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~-----~~~A~~ 161 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD-----ADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-----HHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC-----HHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hcccccccCCchhh
Q 029406 168 LFPDMIVYDPPEDL 181 (194)
Q Consensus 168 ~~~~m~~~~~~~~~ 181 (194)
+|++|...|+.||.
T Consensus 162 l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 162 VDAHMVESEVVPEE 175 (501)
T ss_dssp HHHHHHHTTCCCCH
T ss_pred HHHHHHhcCCCCCH
Confidence 99999998888873
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=198.83 Aligned_cols=134 Identities=15% Similarity=0.087 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRK--EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
..|+++|++||+.|++++|.++|+.|.+ ..|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4588999999999999999999999862 35899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCh-HHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 114 RAFSDSGLP-SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 114 ~~~~~~g~~-~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
++||+.|+. +.|.++|++|.++|+.||..||++++.++. ++.+++.+.++...+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e-----R~~vL~~Vrkv~P~f~p 264 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED-----RATVLKAVHKVKPTFSL 264 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH-----HHHHHHHHGGGCCCCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh-----HHHHHHHHHHhCcccCC
Confidence 999999985 789999999999999999999999988777 66779998888886654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-22 Score=176.04 Aligned_cols=110 Identities=8% Similarity=0.043 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKR---EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 146 (194)
-..|||+||++||+.|++++|..+|.+|.+ .|+.||.+|||+||+|||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356999999999999999999999988874 58999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhh
Q 029406 147 ILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFE 183 (194)
Q Consensus 147 ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 183 (194)
||+++|+.|+. .+.|.++|++|...|..+|.+-
T Consensus 206 LI~glcK~G~~----~e~A~~Ll~EM~~kG~~PD~vt 238 (1134)
T 3spa_A 206 ALQCMGRQDQD----AGTIERCLEQMSQEGLKLQALF 238 (1134)
T ss_dssp HHHHHHHHTCC----HHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHhCCCc----HHHHHHHHHHHHHcCCCCChhh
Confidence 99999998862 5788999999999999888554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-11 Score=103.36 Aligned_cols=135 Identities=7% Similarity=0.021 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCCC--HHhH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVLFD--QHTF 109 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~--~~ty 109 (194)
..+..+...|.+.|++++|.++|+.+.+ . .+.+..+|+.+..+|.+.|++++|..+|+++.+. +..|+ ..+|
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYA-L-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 4466778888888899999999888873 2 3346888888889999999999999888888765 66777 7788
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
+.+..+|.+.|++++|..+|+.+.+.+ +.+..+|..+...|.+.|+ +++|.+.++.+....|.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI-----PGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC-----HHHHHHHHHHHHhcCCC
Confidence 889999999999999999888887664 4477888888888888888 88888888877665543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-11 Score=102.33 Aligned_cols=135 Identities=6% Similarity=0.025 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..++.+|.+.|++++|.++|+.+.+ . .+.+..+|+.+..+|.+.|++++|.++|+++.+.. +.+..+|+.+..+
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAAR-L-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-T-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4577899999999999999999999973 2 34588999999999999999999999999998764 3478999999999
Q ss_pred HhcCCChHHHHHHHHHhHhC----CCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 116 FSDSGLPSEAMFIYNEMRSS----PATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~----g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
|.+.|++++|..+|+.|.+. +..|+ ..+|..+..+|.+.|+ .++|.++++.+...+|.
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-----YDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHSSC
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhCCC
Confidence 99999999999999999765 77888 7899999999999999 99999999988766553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-08 Score=66.90 Aligned_cols=131 Identities=10% Similarity=0.092 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+...+...|++++|..+|+.+.+ . .+.+...+..+...+...|++++|..+|.++...+ +.+...+..+...|.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALE-L-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH-c-CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34566778889999999999999973 2 23467888889999999999999999999988764 346778999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|++++|..+++.+.... +.+..++..+...+...|+ .+.|...+..+....|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD-----YDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHcc-----HHHHHHHHHHHHccCC
Confidence 9999999999999987652 3457788889999999999 8888888887655443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-07 Score=75.72 Aligned_cols=133 Identities=13% Similarity=0.101 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+.+.|++++|...|+.+.+ . .+.+..+|+.+...|.+.|++++|...|+++.+.. +.+..+|+.+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE-L-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 3455677788889999999999999873 2 22347788999999999999999999999988763 5578899999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|.+.|++++|..+|+.+.+. .+.+..+|..+...+.+.|+ .++|.+.++.+....|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGK-----LQEALMHYKEAIRISP 370 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCC
Confidence 99999999999999998765 34457889999999999999 8888888887765443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-06 Score=68.89 Aligned_cols=128 Identities=9% Similarity=0.035 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+-..+...|++++|...|+.... +.| +..+++.+...|.+.|++++|...|.++.+.+ +.+..+|..+..+|.+
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 334444555666666666665542 234 47788888899999999999999999888753 2256789999999999
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|++++|..+|+.+.+. .+.+..+|..+...+.+.|+ .++|.+.++.+....|
T Consensus 284 ~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGN-----IEEAVRLYRKALEVFP 336 (388)
T ss_dssp HSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTC-----HHHHHHHHHHHTTSCT
T ss_pred cCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCC
Confidence 99999999999998765 35677889999999999999 8888888887765543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-06 Score=64.52 Aligned_cols=130 Identities=7% Similarity=-0.066 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCCC-HHhHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN-KKVVEAKQVWEDLKREEVLFD-QHTFGDIIR 114 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~ 114 (194)
.+..+...+...|++++|.+.|+.... . .+.+...+..+...|... |++++|...|.++...+..|+ ...|..+..
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALS-I-KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 344555666677777777777777752 1 223566677777777777 777777777777766333332 456777777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+|...|++++|...|+.+.+.. +.+...+..+...+...|+ .+.|.+.++....
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ-----LGDADYYFKKYQS 175 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 7777777777777777765541 2345666667777777777 6666666665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.3e-06 Score=62.87 Aligned_cols=114 Identities=12% Similarity=-0.003 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~ 118 (194)
.+...+...|++++|.+.|+...+ . .+.+...+..+-..|...|++++|..+|.++...+..| +...|..+...|..
T Consensus 76 ~la~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 76 ALAVVFQTEMEPKLADEEYRKALA-S-DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-H-CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence 333444444555555555444431 1 11234444444444444555555555554444422222 23344444444444
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.|++++|..+|+...+.. +.+..+|..+...+...|+
T Consensus 154 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 154 MKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 455555544444443321 1223444444444444444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.4e-07 Score=69.33 Aligned_cols=133 Identities=8% Similarity=-0.010 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFY---RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+...+.+.|++++|.+.|+.+.+ . .|+.... ...+..+...|++++|..+|+++.+. .+.+...|+.+-.
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~-~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~ 208 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQD-Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Confidence 44455666677777777777777763 2 2442211 22334444456777777777777665 3456667777777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
+|.+.|++++|...|++..+.. +-+..++..+...+...|+. .+.+.++++......|..
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~----~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKP----PEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCCC
Confidence 7777777777777777765441 23455666666666666662 223455666555444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-06 Score=63.83 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
..+..+...+...|++++|...|+... ..+..| +...+..+-..|.+.|++++|...|.+..+.. +.+...+..+..
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 183 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEAS-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMAD 183 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 345566777888999999999999987 333445 46778888889999999999999999887764 336788999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
.|...|++++|..+|+...+. .+.+...+..+...+...|+ .+.|.++++.+....|..
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~-----~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFED-----RDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTTS
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHCCCC
Confidence 999999999999999998765 24566778888888888899 888888888876655443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-06 Score=64.52 Aligned_cols=134 Identities=8% Similarity=-0.044 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|++++|.+.|+...+ . .+.+...|..+-..|...|++++|...|.+..... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALK-S-DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455677788899999999999999973 2 23468889999999999999999999999998764 3477899999999
Q ss_pred HhcC-CChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDS-GLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~-g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|... |++++|..+|+.+.+.+..|+ ...|..+...+...|+ .+.|.+.++.+....|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~ 144 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-----FGLAEAYLKRSLAAQP 144 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHST
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 9999 999999999999987433443 6788888899999999 8888888887765444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.64 E-value=6.6e-07 Score=73.03 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=104.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
-..+...|++++|...|+.+.+ ..+.+...+..+..+|.+.|++++|..+|.++.+.. +.+..+|..+..+|...|+
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 4457889999999999999973 234578899999999999999999999999998753 3478999999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCC-hhhHHHH------------HHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 122 PSEAMFIYNEMRSSPATPI-SLPFRVI------------LKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~-~~ty~~l------------l~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
+++|..+|+.+... .|+ ...+..+ ...|...|+ .+.|.++|+.+....|.
T Consensus 227 ~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 227 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-----YTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCc
Confidence 99999999999754 344 3444444 678888888 88899998887665443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-06 Score=67.12 Aligned_cols=125 Identities=9% Similarity=0.073 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHh---HHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT---FGDII 113 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---y~~li 113 (194)
.+..+-..+...|++++|++.|+. +.+...+..+...|.+.|++++|...|+++.+.. |+... ...++
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~ 173 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWV 173 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHH
Confidence 344555778899999999999886 4678899999999999999999999999998774 55332 23345
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|+ +++|.+.++......
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~-----~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGR-----WEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC
T ss_pred HHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC
Confidence 5666779999999999999877 56788899999999999999 999999988865443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.62 E-value=7.6e-07 Score=63.21 Aligned_cols=130 Identities=9% Similarity=-0.053 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|++++|...|+...+ . .+.+...+..+...|...|++++|...|.+..... +.+...+..+...
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 119 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLA-D-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHH
Confidence 3455677788889999999999999973 2 33468888999999999999999999999988763 4477889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|...|++++|..+++...... +.+..+|..+...+...|+ .+.|.+.++....
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~ 172 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGR-----HEEALPHFKKANE 172 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 999999999999999987652 4457888999999999999 8888888876644
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.1e-06 Score=68.28 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHH------------HHHHHhCCCHHHHHHHHHHHHhcCC
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDM------------LMMLARNKKVVEAKQVWEDLKREEV 102 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~a~~l~~~m~~~g~ 102 (194)
..+..+...+...|++++|...|+.+.. ..|+ ...+..+ ...|.+.|++++|..+|.++...
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-- 286 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-- 286 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 4456777888889999999999999873 2343 4444444 78888899999999999988764
Q ss_pred CCC-----HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 103 LFD-----QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 103 ~p~-----~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|+ ...|..+..+|.+.|++++|...++.+... .+.+..+|..+...|...|+ .+.|.+.++......|
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEM-----YDEAIQDYETAQEHNE 360 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTSS
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhCc
Confidence 344 457888899999999999999999988665 24467889999999999999 8888888887765444
Q ss_pred c
Q 029406 178 P 178 (194)
Q Consensus 178 ~ 178 (194)
.
T Consensus 361 ~ 361 (450)
T 2y4t_A 361 N 361 (450)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=61.71 Aligned_cols=131 Identities=8% Similarity=-0.099 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+...+...|++++|...|+... ...+.+...+..+...|...|++++|...+.+..... +.+...|..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVY--DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTC--CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH--HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456667788999999999999986 2234578889999999999999999999999988763 347788999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|++++|..+|+..... .+.+...+..+...+...|+ .+.|.+.++......|
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGR-----FDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCc-----HHHHHHHHHHHHhcCc
Confidence 999999999999998765 34567888888899999999 8888888887655443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.4e-06 Score=64.38 Aligned_cols=133 Identities=9% Similarity=-0.005 Sum_probs=109.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CCCCHHh
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--------VLFDQHT 108 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------~~p~~~t 108 (194)
.+..+-..+...|++++|.+.|+...+ ..+.+...+..+-..|.+.|++++|...|.+..... .+.+..+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 345567778889999999999999973 234568899999999999999999999999887632 1334678
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|..+..+|.+.|++++|...|+...+.. +.+...|..+...+...|+ .+.|.+.++......|
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGN-----FENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTC-----HHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhcc-----HHHHHHHHHHHHccCC
Confidence 9999999999999999999999987652 3467888999999999999 8999999888766554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=6.3e-06 Score=61.29 Aligned_cols=132 Identities=8% Similarity=0.006 Sum_probs=92.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+...|++++|.+.|+...+ . .+.+...+..+-..|.+.|++++|...+.+..... +.+...+..+...|
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALR-A-GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344556667777888888888887763 2 23456677777778888888888888888776553 23567777788888
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.+.|++++|...|+...+.. +.+..+|..+...|...|+ .+.|.+.++......|
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKEN-----REKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----TTHHHHHHHHHHHHCT
T ss_pred HHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccC-----HHHHHHHHHHHHccCc
Confidence 88888888888888775542 3346677777777877777 6777777776654443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6.1e-07 Score=71.20 Aligned_cols=127 Identities=9% Similarity=-0.015 Sum_probs=104.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
+..+...|++++|...|+...+...-.++..++..+-..|.+.|++++|...|.+..... +.+..+|..+...|.+.|+
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC
Confidence 444558899999999999998433222358999999999999999999999999988763 3367899999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
+++|...|+...+.. +.+..+|..+...|.+.|+ .+.|.+.++.....
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~ 314 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA-----HREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHh
Confidence 999999999987652 4457889999999999999 88888888776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.51 E-value=8.9e-06 Score=63.05 Aligned_cols=130 Identities=8% Similarity=-0.083 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+.+.|++++|...|+...+ . .+.+...|..+-..|.+.|++++|...|.+..+.. +.+..+|..+..+
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVE-L-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 4456677888899999999999999973 2 23468899999999999999999999999987754 3367899999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCC-----------ChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATP-----------ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p-----------~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|.+.|++++|...|+......-.. +..+|..+...+...|+ .+.|..+++...
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR-----PDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC-----HHHHHHHTTCCS
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHH
Confidence 999999999999999886542111 46788899999999999 889988887543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-06 Score=62.33 Aligned_cols=133 Identities=12% Similarity=0.025 Sum_probs=108.6
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
...+..+...+...|++++|...|+...+ . .+.+...+..+-..|...|++++|..+|.+..+.. +.+...+..+..
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 133 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALE-L-DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGT 133 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455677788889999999999999973 2 23468889999999999999999999999988764 346788999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.|.+.|++++|..+++...+. .+.+...+..+...+...|+ .+.|.+.++......
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGM-----LDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC
Confidence 999999999999999998765 23467788888889998898 788888877765443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.5e-08 Score=81.95 Aligned_cols=84 Identities=11% Similarity=-0.002 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
|+..+|+.+-..|...|++++|..+|..+ ..|..+..++++.|+++.|.+.+..+ .+..||..++
T Consensus 120 pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~ 184 (449)
T 1b89_A 120 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 184 (449)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHH
Confidence 34445555555555555555555555544 24666666666666666666666665 2567777777
Q ss_pred HhhCCCCchHHhHHHHHhhhcccc
Q 029406 149 KGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+|+..|+ ++.|......+
T Consensus 185 ~aCv~~~e-----f~lA~~~~l~L 203 (449)
T 1b89_A 185 FACVDGKE-----FRLAQMCGLHI 203 (449)
T ss_dssp HHHHHTTC-----HHHHHHTTTTT
T ss_pred HHHHHcCc-----HHHHHHHHHHH
Confidence 77777777 77776665543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.6e-06 Score=65.40 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=37.6
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+..+|..+...|.+.|++++|..+|+...+. .+.+..+|..+...|...|+ .+.|.+.++....
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~ 275 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDR-----SEEAVEAYTRALE 275 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHh
Confidence 4556666666666666666666666665543 13345566666666666666 5556655555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.43 E-value=7.8e-07 Score=70.86 Aligned_cols=126 Identities=8% Similarity=-0.065 Sum_probs=101.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
...+.+.|++++|...|+...+...-.++...|..+-..|.+.|++++|...|.+..+.. +.+..+|+.+..+|.+.|+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 557778899999999999998433222368899999999999999999999999988763 3478899999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+++|...|+...+. .+.+..+|..+...|...|+ .++|.+.++....
T Consensus 263 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~ 309 (365)
T 4eqf_A 263 SEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGA-----YREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCC-----HHHHHHHHHHHHH
Confidence 99999999998765 23457889999999999999 7777777776543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=6.9e-06 Score=62.27 Aligned_cols=128 Identities=9% Similarity=-0.098 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|++++|...|+...+ . .+.+...|..+-..|...|++++|...|.+..... +.+...|..+...
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALA-I-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH-c-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 3455667777788999999999888873 2 23357888888888888999999999988887753 2356788888888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|.+.|++++|...|+.+.+. .|+...+..++..+...|+ .+.|...+....
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~~~ 171 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLD-----EKQAKEVLKQHF 171 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC-----HHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcC-----HHHHHHHHHHHH
Confidence 88999999999988888664 3444444444444444455 666666665443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-05 Score=61.96 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=94.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---------------
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--------------- 101 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------------- 101 (194)
.+..+-..+...|++++|...|+...+ . .+.+...+..+...|...|++++|...|.++....
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLE-L-KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence 344556666677777777777777762 2 23356677777777777777777777776655422
Q ss_pred --------------------------------CCC---CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHH
Q 029406 102 --------------------------------VLF---DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146 (194)
Q Consensus 102 --------------------------------~~p---~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 146 (194)
..| +..+|..+...|.+.|++++|...|+..... .+.+..+|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~ 256 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHH
Confidence 112 4778888999999999999999999988665 2345678888
Q ss_pred HHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 147 ILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 147 ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...+...|+ .+.|.+.++......|
T Consensus 257 l~~~~~~~g~-----~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 257 LGATLANGNQ-----SEEAVAAYRRALELQP 282 (368)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 8888998998 8888888877655443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-05 Score=54.97 Aligned_cols=133 Identities=8% Similarity=-0.041 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+.+.|++++|...+..... ..+-+...+..+-..+...++++.|...+.+..... +-+...+..+-..
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLV 116 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 4456677788889999999999999863 233456777777888889999999999999887653 3367889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|.+.|++++|...|+...+.. +-+..+|..+-..|.+.|+ .++|.+.|+......|
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL-----RDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTTH
T ss_pred HHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC-----HHHHHHHHHHHHhCCc
Confidence 999999999999999987652 4457788999999999999 8888888887655443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-05 Score=57.52 Aligned_cols=114 Identities=9% Similarity=-0.074 Sum_probs=60.9
Q ss_pred CCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
|++++|...|+...+ +.| +...|..+=.+|...|++++|+..|++..+.. .+...+..+-.+|...|++++|..
T Consensus 98 g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666652 223 35555556666666666777766666666655 466666666666666677777766
Q ss_pred HHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 128 l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
.|+...+. -+-+...+..+...+...|+ .++|.+.++..+
T Consensus 173 ~~~~al~~-~P~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~~ 212 (217)
T 2pl2_A 173 QYAKALEQ-APKDLDLRVRYASALLLKGK-----AEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHTC--------------------
T ss_pred HHHHHHHh-CCCChHHHHHHHHHHHHccC-----HHHHHHHHHHHh
Confidence 66666543 12345556666666666666 666666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-05 Score=52.16 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|+++.|.+.|+...+ . .+.+...+..+...+.+.|++++|..+|.++.... +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455667778889999999999999973 2 23467888999999999999999999999988753 3477889999999
Q ss_pred HhcCCChHHHHHHHHHhHhC
Q 029406 116 FSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~ 135 (194)
|...|++++|...|+.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999988664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-05 Score=61.38 Aligned_cols=127 Identities=7% Similarity=-0.127 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcC-CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQD-QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
+..+-..+...| ++++|...|+.... . .+.+...|..+-..|...|++++|...|.+..... +.+...+..+...|
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATT-L-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHT-T-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 445555666667 77777777777762 2 22346667777777777778888877777776553 22345566677777
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
...|++++|..+|+...+.. +.+..++..+...+...|+ .+.|...++...
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~ 220 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGE-----WKTAEKWFLDAL 220 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccc-----HHHHHHHHHHHH
Confidence 77788888888777776552 3456677777777777777 777777766553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-05 Score=57.41 Aligned_cols=127 Identities=9% Similarity=-0.106 Sum_probs=89.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.+-..+...|++++|...|+.. +.|+...|..+-..|.+.|++++|...|.+..... +.+...|..+-.+|...
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 3444566778888888887765 34677788888888888888888888888777653 33667788888888888
Q ss_pred CChHHHHHHHHHhHhCC--------------CCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 120 GLPSEAMFIYNEMRSSP--------------ATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g--------------~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|++++|...|+...+.. ..| ....|..+-..+...|+ .+.|.+.++......|
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-----WKKAEEQLALATSMKS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-----HHHHHHHHHHHHHcCc
Confidence 88888888888776541 111 12566777777777888 7777777666555444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-05 Score=60.31 Aligned_cols=134 Identities=11% Similarity=-0.041 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
..+..+-..+...|++++|.+.|+... .....|+ ...|..+-..|...|++++|+..|.+..+.. +-+..+|..+-
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 115 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIG 115 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 355666677888888888888888887 3332222 3457788888888888888888888887653 22556788888
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH-HhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL-KGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll-~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
..|...|++++|...|+...+. .+.+...|..+. ..|. .++ .+.|.+.++......|.
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~-~~~-----~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYY-NKE-----YVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHH-TTC-----HHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHhCcc
Confidence 8888888888888888887665 233455666665 4443 446 78888888777655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=4e-06 Score=62.81 Aligned_cols=138 Identities=10% Similarity=-0.037 Sum_probs=108.6
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhh-cCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKE-IWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-------- 101 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-------- 101 (194)
...+..+-..+...|++++|...|+...+. ....|+ ...|..+-..|.+.|++++|...|.+.....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 117 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence 455667778888899999999999988631 112223 5788899999999999999999999888732
Q ss_pred ----------------CC-CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHH
Q 029406 102 ----------------VL-FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDD 164 (194)
Q Consensus 102 ----------------~~-p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~ 164 (194)
.. .+...|..+...|...|++++|...|+...+.. +.+..+|..+...+...|+ .+.
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~~ 191 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS-----FPE 191 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHH
T ss_pred HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCC-----HHH
Confidence 22 245678888899999999999999999998873 4467888889999999999 888
Q ss_pred HhhhcccccccCCc
Q 029406 165 FLELFPDMIVYDPP 178 (194)
Q Consensus 165 a~~~~~~m~~~~~~ 178 (194)
|...++......|.
T Consensus 192 A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 192 AIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCHH
Confidence 88888877655443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=4.3e-06 Score=63.40 Aligned_cols=125 Identities=6% Similarity=-0.110 Sum_probs=103.4
Q ss_pred hcCCHhHHHHHHHHHHhhcCC-C--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWY-R--PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~-~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
..+++++|+..|+.+.+ ... . .+...|..+-..|...|++++|...|.+..... +.+..+|..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHh-cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 45889999999999983 321 1 246788899999999999999999999998764 336889999999999999999
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
+|..+|+...+. .+.+..+|..+...+...|+ .+.|.+.++.+....|..
T Consensus 95 ~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 95 AAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGR-----DKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhc-CccccHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHhCCCC
Confidence 999999998775 23457889999999999999 889999988876655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.4e-05 Score=58.52 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
...+..+-..|.+.|++++|...|.+..... +.+..+|..+...|...|++++|...|+...+.. +.+..+|..+...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555554432 2244555555555555566666655555554431 2234455555555
Q ss_pred hCCCCchHHhHHHHHhhhcccccc
Q 029406 151 LIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+...|+ .+.|.+.++....
T Consensus 250 ~~~~g~-----~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 250 YSNMSQ-----YDLAAKQLVRAIY 268 (327)
T ss_dssp HHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHhcc-----HHHHHHHHHHHHH
Confidence 555555 5555555554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00015 Score=48.09 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|++++|...|+.... . .+.+...+..+...+...|++++|..+|.++.... +.+..++..+...
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 112 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 112 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHH-H-CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455677778889999999999999973 2 24467888999999999999999999999998764 3467889999999
Q ss_pred HhcCCChHHHHHHHHHhHhC
Q 029406 116 FSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~ 135 (194)
|.+.|++++|...|..+...
T Consensus 113 ~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 113 YYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHcc
Confidence 99999999999999988653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.1e-07 Score=74.52 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+..++..+...|++++|+..++..++ ..++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+-.
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd 130 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 130 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT-------CC----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHH
Confidence 44677788888888999999887776662 24567888889999999999988888885 377788999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.|...|.+++|..+|..+ ..|..+..++++.|+ .+.|.+.+..+
T Consensus 131 ~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~-----yq~AVea~~KA 174 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE-----YQAAVDGARKA 174 (449)
T ss_dssp ------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC-----HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc-----HHHHHHHHHHc
Confidence 999999999999999876 588889999999998 77777777755
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.2e-05 Score=56.79 Aligned_cols=135 Identities=9% Similarity=-0.039 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+...-..+...|++++|...|+... .....++...+..+-..|.+.|++++|+..|.+..+.. +-+...|..+-..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYL-KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH-hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344555566778899999999999987 34433677777778888889999999999999887653 2256788889999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCCh-------hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPIS-------LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~-------~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
|...|++++|...|+...+.. +-+. ..|..+-..+...|+ .++|.+.++......|.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGN-----IEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTTSSCH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhcc-----HHHHHHHHHHHHhcCCC
Confidence 999999999999999876641 2223 456666677778888 88888888877666554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.1e-05 Score=58.84 Aligned_cols=132 Identities=11% Similarity=0.019 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC----CHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHh
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP----DMFFYRDM------------LMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p----~~~~~~~l------------i~~~~~~g~~~~a~~l~~~m~~ 99 (194)
..+..+-..+...|++++|...|+...+ ..| +...+..+ -..+...|++++|..+|.++..
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455677788889999999999999973 345 34444444 4788899999999999999887
Q ss_pred cCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 100 ~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.. +.+...+..+...|...|++++|...++..... .+.+..+|..+...+...|+ .+.|.+.++......|
T Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 149 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGD-----HELSLSEVRECLKLDQ 219 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHCT
T ss_pred hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCc
Confidence 54 347788999999999999999999999998776 24567888899999999999 8888888877655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-05 Score=59.90 Aligned_cols=134 Identities=11% Similarity=0.029 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcC-----------------------CCC-CHHHHHHHHHHHHhCCCHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIW-----------------------YRP-DMFFYRDMLMMLARNKKVVEAK 91 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----------------------~~p-~~~~~~~li~~~~~~g~~~~a~ 91 (194)
..+..+-..+...|++++|...|+....... ..| +...|..+-..+...|++++|.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 3455677778889999999999999873110 223 3567888888999999999999
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 92 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
..|.+..... +.+..+|..+..+|.+.|++++|...|+...+.. +.+..+|..+...+...|+ .+.|.+.++.
T Consensus 160 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~ 232 (258)
T 3uq3_A 160 KAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE-----YASALETLDA 232 (258)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhh-----HHHHHHHHHH
Confidence 9999998764 3378899999999999999999999999987652 4457888899999999999 8888888876
Q ss_pred ccccC
Q 029406 172 MIVYD 176 (194)
Q Consensus 172 m~~~~ 176 (194)
.....
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 65433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-05 Score=64.03 Aligned_cols=128 Identities=9% Similarity=-0.018 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+...|++++|...|+...+ .. |+...|..+...|...|++++|...|.+..... +.+..+|..+...|
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIE-LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh-hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 344566667777888888888887763 22 336777777777777888888888777776543 23556777777777
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
...|++++|...|+...+.. +.+..+|..+...+...|+ .+.|...++....
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENK-----FDDCETLFSEAKR 366 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTC-----HHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 77888888888777776542 3345677777777777777 6666666666543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.25 E-value=6e-05 Score=56.05 Aligned_cols=132 Identities=9% Similarity=-0.083 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHhcCCCC
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN-----------KKVVEAKQVWEDLKREEVLF 104 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~l~~~m~~~g~~p 104 (194)
..+..+-..+.+.|++++|...|+...+ . -+-+...+..+=..|.+. |++++|+..|++..+.. +-
T Consensus 40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~ 116 (217)
T 2pl2_A 40 EALYWLARTQLKLGLVNPALENGKTLVA-R-TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PR 116 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cc
Confidence 4455666778889999999999999973 2 223577888888889999 99999999999988753 22
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...|..+-.+|...|++++|...|+...+.. .+...+..+-..+...|+ .++|...++......|
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGR-----LDEALAQYAKALEQAP 182 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 67789999999999999999999999987776 678889999999999999 8888888887655444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-05 Score=54.55 Aligned_cols=132 Identities=10% Similarity=-0.022 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
..+..+=..+.+.|++++|++.|+...+ +.| +...|..+-..|.+.|++++|...+.......-. +...+..+-.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLK---ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 3456667778889999999999999973 234 5788999999999999999999999998766433 6778888889
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.+...++++.+...+...... .+-+...+..+-..+.+.|+ .++|.+.|+......|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGE-----HDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCC-----chhHHHHHHHHHHhcc
Confidence 999999999999999987664 23456788888889999999 8888888887765444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00038 Score=52.94 Aligned_cols=81 Identities=6% Similarity=-0.045 Sum_probs=37.4
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc----C
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD----S 119 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~ 119 (194)
.+++++|...|+... ..+ +...+..+=..|.. .+++++|+..|.+..+.+ +...+..+-..|.. .
T Consensus 55 ~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 55 EKNLKKAASFYAKAC-DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp CCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred CCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc
Confidence 445555555554444 222 34444444444444 445555555554444443 34444444444444 4
Q ss_pred CChHHHHHHHHHhHhC
Q 029406 120 GLPSEAMFIYNEMRSS 135 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~ 135 (194)
+++++|..+|+...+.
T Consensus 128 ~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDL 143 (273)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhc
Confidence 4455555544444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0001 Score=57.51 Aligned_cols=128 Identities=9% Similarity=-0.025 Sum_probs=100.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
...+...|+++.|.+.|+...+. .+.+...+..+-..|...|++++|...+.+..... +.+..+|..+...|...|+
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 46778899999999999999732 34568889999999999999999999999998764 4478899999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHH------------HHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRV------------ILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~------------ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
+++|...|+...+.. +.+..++.. +...+.+.|+ .+.|.+.++......|.
T Consensus 204 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 204 HELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGR-----YTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCC
Confidence 999999999987642 222333322 2455778888 88888888876554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.20 E-value=4.2e-05 Score=63.60 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|+++.|...|+...+ . .+.+...|..+-..|...|++++|...|.+..... +-+...|..+...|.
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVD-L-NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhc-c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445555566777777777777752 1 22346667777777777777777777777776543 224456777777777
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
..|++++|..+|+...+.. +.+...|..+...+...|+ .+.|.+.++....
T Consensus 356 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD-----FDTAIKQYDIAKR 406 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC-----HHHHHHHHHHHHH
Confidence 7777777777777765542 3345566777777777777 7777777666544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=60.37 Aligned_cols=134 Identities=10% Similarity=0.107 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------C-C
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-----WYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE------E-V 102 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g-~ 102 (194)
..+..+-..+...|++++|...|+...+.. +-.| ...+|+.+-..|...|++++|...|.+.... . -
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345567777888999999999999986321 2223 4668899999999999999999999988754 1 1
Q ss_pred CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC------CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS------PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+....+|..+-..|...|++++|..+|+...+. +..| ...++..+...|...|+ .+.|.+.++....
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~l~ 197 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-----YQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 234678999999999999999999999988654 2233 35688888899999999 8888888776643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.6e-05 Score=59.90 Aligned_cols=134 Identities=10% Similarity=0.082 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CC-
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-----WYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE------EV- 102 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~- 102 (194)
..+..+-..+...|++++|...|+...... +-.| ....+..+-..|...|++++|...|.+.... +-
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345567777888999999999999986321 2223 4678888999999999999999999988764 22
Q ss_pred CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC------CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS------PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
......+..+...|...|++++|..+|+..... +..| ...++..+...|...|+ .+.|.+.++....
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~ 223 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-----FKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 234567889999999999999999999988653 2233 34678888889999999 8888888876654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.4e-05 Score=61.95 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+...-..+.+.|++++|+..|+.+.+ .. |+...|..+..+|.+.|++++|...|.++.+.+ +.+..+|..+..+|.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALE-LK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh-cC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44556678889999999999999984 33 899999999999999999999999999998764 446789999999999
Q ss_pred cCCChHHHHHHHHHhHhCC
Q 029406 118 DSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g 136 (194)
+.|++++|...|+.+...+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS
T ss_pred HHhhHHHHHHHHHHHHhcC
Confidence 9999999999999886653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0007 Score=51.48 Aligned_cols=128 Identities=5% Similarity=-0.089 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHh----cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHH
Q 029406 36 SDLVSVLAEFQR----QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQH 107 (194)
Q Consensus 36 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ 107 (194)
..+..+-..+.. .+++++|+..|+... ..+ +...+..+=..|.. .+++++|+..|.+..+.+ +..
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 334445555666 888888888888887 343 66777777777877 888888888888887766 566
Q ss_pred hHHHHHHHHhc----CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC----CCchHHhHHHHHhhhcccccccCCc
Q 029406 108 TFGDIIRAFSD----SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP----YPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 108 ty~~li~~~~~----~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~----~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
.+..+-..|.. .+++++|..+|+...+.+ +...+..+-..|.. .++ .++|.+.++.....+++
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~-----~~~A~~~~~~a~~~~~~ 218 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN-----FKEALARYSKACELENG 218 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC-----HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcc-----HHHHHHHHHHHHhCCCH
Confidence 77777777777 788888888888877664 34556666666666 777 77777777766555553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=8.4e-05 Score=49.66 Aligned_cols=113 Identities=12% Similarity=-0.015 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|+++.|...|+...+ -.+.+...+..+-..|...|++++|...|.+..+.. +.+...|..+-.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 4456677778889999999999999872 223468888889999999999999999999888753 3367889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
|.+.|++++|...|+...... +-+...+..+...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 999999999999999876541 223344444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00012 Score=48.49 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-..+...|+++.|...|+.... . .+.+...+..+-..|...|++++|...+.+..... +.+...|..+-..|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIE-L-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 445666777889999999999999873 2 23468888999999999999999999999988753 33678899999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g 155 (194)
.+.|++++|...|+...... +.+...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 99999999999999986652 234556666655555444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=60.89 Aligned_cols=133 Identities=8% Similarity=0.051 Sum_probs=104.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CC-C
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEI------WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE------EV-L 103 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~-~ 103 (194)
.+..+-..+...|++++|..+|+...+.. ........+..+-..|...|++++|...|.+.... +- .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 35567778888999999999999987310 23334677888999999999999999999988764 22 3
Q ss_pred CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC------CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS------PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 104 p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
....+|..+...|...|++++|..+|+...+. +-.| ....|..+...+...|+ .+.|.++++....
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-----YEEVEYYYQRALE 181 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 34678999999999999999999999988653 2233 35678888889999999 8888888776643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=60.89 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CCC
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-----WY-RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE------EVL 103 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~ 103 (194)
..+..+-..+...|++++|...|+...+.. .. +.....+..+-..|...|++++|...|.+.... +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345567778888999999999999986321 11 234678888999999999999999999988765 222
Q ss_pred C-CHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 104 F-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 104 p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
| ...++..+-..|.+.|++++|..+|+...+
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 456899999999999999999999998754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.11 E-value=3.6e-05 Score=50.69 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
...|..+-..+...|++++|..+|.++.... +.+..++..+...|.+.|++++|..+|+.+.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888899999999999999999998763 3467889999999999999999999999987652 4467788899999
Q ss_pred hCCCCchHHhHHHHHhhhcccccccCC
Q 029406 151 LIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...|+ .+.|...++.+....|
T Consensus 87 ~~~~~~-----~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 87 YYKQGD-----YDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HHHhcC-----HHHHHHHHHHHHHhCC
Confidence 999999 8889988887765544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00029 Score=53.19 Aligned_cols=132 Identities=9% Similarity=-0.037 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF--DQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~ty~~li~~ 115 (194)
+...-..+...|++++|...|+...+ . .+.+...+..+-..|...|++++|+..|.+....+-.| ....|..+-..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEA-K-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH-T-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566778888888888888763 1 12234467777778888888888888888877743222 23347788888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|...|++++|...|+...+.. +-+..+|..+...|...|+ .+.|.+.++......|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN-----FPLAIQYMEKQIRPTT 139 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHGGGCCSSC
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC-----HHHHHHHHHHHhhcCC
Confidence 888888888888888776541 3345677777788888888 7777777777655433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.08 E-value=9.5e-05 Score=61.43 Aligned_cols=130 Identities=11% Similarity=-0.040 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|++++|...|+...+ ..|+...|..+-..|...|++++|...|.+..... +.+..+|..+...|.
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 34455567789999999999999983 45678889999999999999999999999988764 336788999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|++++|...|+...... +-+..+|..+...+...|+ .+.|.++++......|
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGK-----FTESEAFFNETKLKFP 375 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 9999999999999987652 3346788899999999999 8888888887755443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=6.5e-05 Score=62.77 Aligned_cols=131 Identities=9% Similarity=0.025 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHhcCCCCCH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN---------KKVVEAKQVWEDLKREEVLFDQ 106 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~l~~~m~~~g~~p~~ 106 (194)
..+..+-..|.+.|++++|...|+...+ +.|+...+..+-..|... |++++|+..|.+..+.. +-+.
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 213 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDG 213 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCH
Confidence 3455667778888999999999999873 457778888888888888 99999999999888764 3367
Q ss_pred HhHHHHHHHHhcC--------CChHHHHHHHHHhHhCCCC---CChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 107 HTFGDIIRAFSDS--------GLPSEAMFIYNEMRSSPAT---PISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 107 ~ty~~li~~~~~~--------g~~~~a~~l~~~M~~~g~~---p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
..|..+-.+|... |++++|...|+...+.. + -+...|..+-..|...|+ .++|.+.|+.....
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~l 287 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEES-----YGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh
Confidence 8888899999888 88999999999887641 2 367888888888999999 88888887766544
Q ss_pred C
Q 029406 176 D 176 (194)
Q Consensus 176 ~ 176 (194)
.
T Consensus 288 ~ 288 (474)
T 4abn_A 288 D 288 (474)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00015 Score=50.42 Aligned_cols=126 Identities=7% Similarity=-0.063 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|+++.|...|+...+ . .+.+...+..+-..+...|++++|...|.+..... +.+...|..+-.+|.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44566677889999999999999873 2 23468888899999999999999999999988764 346788999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhH--HHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPF--RVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty--~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
..|++++|...|+...+.. +-+...+ ..+...+...|+ .++|.+.++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKA-----FERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-----HHHHHHcccch
Confidence 9999999999999987652 2233344 333333555666 67777666543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.98 E-value=7.6e-05 Score=57.95 Aligned_cols=128 Identities=9% Similarity=0.009 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-CC----HHhHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF----FYRDMLMMLARNKKVVEAKQVWEDLKREEVL-FD----QHTFG 110 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~----~~ty~ 110 (194)
..+..+...|++++|..+++...+.....|+.. .+..+-..+...+++++|+..|.+....... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 457778899999999999999984333334422 3345666777788999999999999874322 23 34799
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHh----C-CCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRS----S-PATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~----~-g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+-..|...|++++|...|+...+ . +..+. ..+|..+...|.+.|+ .++|.+.++..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-----y~~A~~~~~~a 222 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-----YEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHH
Confidence 999999999999999999999863 2 22222 3488888899999999 77777666544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00044 Score=45.71 Aligned_cols=107 Identities=9% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCC----HHhHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFD----QHTFGD 111 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~ty~~ 111 (194)
+..+-..+...|+++.|...|+...+ . .+.+...+..+-..|...|++++|...|.+..... ..++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKE-L-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44566677889999999999999873 2 24467888888999999999999999999887653 2233 778889
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 112 IIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
+-.+|.+.|++++|...|+...+. .|+...+..+-
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 999999999999999999998764 34554444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00031 Score=54.86 Aligned_cols=128 Identities=10% Similarity=0.030 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MF-FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
+..+...+.+.|+++.|..+|+...+ +.|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|......
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45666777788999999999999873 4454 33 78888888888999999999998887653 2234444433333
Q ss_pred Hh-cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 116 FS-DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 116 ~~-~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.. ..|+++.|..+|+...+. .+-+...|..++..+.+.|+ .+.|..+|+.....
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~-----~~~A~~~~~~al~~ 232 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNE-----DNNTRVLFERVLTS 232 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhc
Confidence 22 368888888888887654 22346777777777888888 78888888776553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00017 Score=63.66 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
..+..+=..|.+.|++++|+..|++..+ +.|+ ...|+.+=.+|.+.|++++|++.|++..+.. +-+...|+.+-.
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~ 119 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLAS 119 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445556666677777777777777752 3343 6677777777777777777777777766542 124567777777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+|.+.|++++|...|++..+. .| +...|..+...+...|+ +++|.+.++..
T Consensus 120 ~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~-----~~~A~~~~~ka 171 (723)
T 4gyw_A 120 IHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCD-----WTDYDERMKKL 171 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC-----CTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhccc-----HHHHHHHHHHH
Confidence 777777777777777776543 23 35667777777777777 55565555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.7e-05 Score=47.91 Aligned_cols=94 Identities=9% Similarity=-0.042 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF--DQHTFGDIIRAF 116 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~ty~~li~~~ 116 (194)
..+-..+...|++++|...|+...+ . .+.+...|..+-..+...|++++|...|.+..+.. +. +...|..+..+|
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQ-L-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH-h-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3445556677788888888877762 1 22356667777777777788888888777776542 22 466777777777
Q ss_pred hcC-CChHHHHHHHHHhHhC
Q 029406 117 SDS-GLPSEAMFIYNEMRSS 135 (194)
Q Consensus 117 ~~~-g~~~~a~~l~~~M~~~ 135 (194)
.+. |++++|...|......
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 777 7888888777776554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.001 Score=42.95 Aligned_cols=95 Identities=12% Similarity=-0.057 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|+++.|...|+.... . .+.+...+..+-..|...|++++|...+.+..... +.+...+..+..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIK-L-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44566677789999999999999873 2 23467788888889999999999999999887763 336788899999999
Q ss_pred cCCChHHHHHHHHHhHhC
Q 029406 118 DSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~ 135 (194)
..|++++|...|+...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988755
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00048 Score=46.77 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=76.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
=..+.+.|++++|++.|+...+ . .+.+...|..+=.+|.+.|++++|+..|.+..+.. +.+...|..+-.+|...|+
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVK-R-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence 3457789999999999999873 2 23468888889999999999999999999988764 3367889999999999999
Q ss_pred hHHHHHHHHHhHhC
Q 029406 122 PSEAMFIYNEMRSS 135 (194)
Q Consensus 122 ~~~a~~l~~~M~~~ 135 (194)
+++|...|+...+.
T Consensus 97 ~~~A~~~~~~al~l 110 (126)
T 4gco_A 97 WSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00027 Score=56.33 Aligned_cols=115 Identities=4% Similarity=-0.142 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----------------MFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
+..+-..+.+.|++++|...|+.... . .|+ ...|..+-.+|.+.|++++|+..|.+..+..
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~-~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVS-W--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-H--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-H--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44556667789999999999999973 2 233 5889999999999999999999999998764
Q ss_pred CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCch
Q 029406 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157 (194)
Q Consensus 102 ~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~ 157 (194)
+.+...|..+-.+|...|++++|...|+...+.. +-+...+..+...+.+.|+.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999987652 33567788888888877773
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00031 Score=59.66 Aligned_cols=132 Identities=7% Similarity=-0.131 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|++++|.+.|+...+ . .+-+...|..+-..|...|++++|...|++..+.. +-+...|..+-.+
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 100 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLA-L-HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHA 100 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT-T-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455566677788999999999999873 2 23357788888899999999999999999887763 3367889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCC---CchHHhHHHHHhhhcccccccC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY---PEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~---g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
|.+.|++++|...|+...+.. +-+...+..+...+... |+ .++|.+.++.....+
T Consensus 101 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~-----~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRA-----LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTT-----HHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcccc-----HHHHHHHHHHHHhcC
Confidence 999999999999999876652 33467788888888777 88 777777776654433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00029 Score=55.02 Aligned_cols=133 Identities=11% Similarity=-0.018 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA-RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+..+...+.+.|+++.|..+|+... ... +++...|........ ..|++++|..+|++..+.. +-+...|..++..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 212 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAR-EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY 212 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHH-TST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 45667777788999999999999997 322 234455554443322 3799999999999887652 3367889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCC-CCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSP-ATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g-~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+.+.|++++|..+|+...... +.|+ ...|..++..+.+.|+ .+.|..+++.+....|
T Consensus 213 ~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~-----~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-----LASILKVEKRRFTAFR 272 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-----HHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHcc
Confidence 999999999999999998863 5664 5678888888888888 7777777776654443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0012 Score=44.65 Aligned_cols=96 Identities=10% Similarity=-0.034 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~ 111 (194)
..+..+-..+...|+++.|...|+...+ ..|+ ...|..+-..|...|++++|...|.+..... +.+...|..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3455667777889999999999999973 4566 6788888888999999999999999887653 336778888
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhC
Q 029406 112 IIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+-.+|...|++++|...|+.....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999988654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.3e-05 Score=54.51 Aligned_cols=95 Identities=4% Similarity=-0.003 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhCCCH--HHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM-LARNKKV--VEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~--~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+-..+...|+++.|...|+...+ .. +.+...+..+-.+ |...|++ ++|...|.+..... +-+...+..+-.
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 123 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQ-LR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLAS 123 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34444455555666666666665542 11 1234444444444 4455555 66666666555442 123455555555
Q ss_pred HHhcCCChHHHHHHHHHhHhC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.|...|++++|...|+...+.
T Consensus 124 ~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHhh
Confidence 666666666666666655443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00016 Score=51.21 Aligned_cols=92 Identities=8% Similarity=0.002 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+-..+.+.|++++|...|+.... +.| +...|..+=.+|.+.|++++|+..|++..+.. +-+...|..+-.+|.+
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 344455566777777777777752 223 46666666667777777777777777666543 2244566667777777
Q ss_pred CCChHHHHHHHHHhHhC
Q 029406 119 SGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~ 135 (194)
.|++++|...|+...+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00094 Score=42.80 Aligned_cols=102 Identities=9% Similarity=-0.132 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC--ChhhHHHHH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP--ISLPFRVIL 148 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~ll 148 (194)
...|..+-..+.+.|++++|...|.+..+.. +.+...|..+-..|...|++++|...|+...+.. +. +...|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4556677788889999999999999988764 3367889999999999999999999999987652 33 578889999
Q ss_pred HhhCCC-CchHHhHHHHHhhhcccccccCCch
Q 029406 149 KGLIPY-PEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 149 ~~~~~~-g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
..+... |+ .++|.+.+.......|++
T Consensus 84 ~~~~~~~~~-----~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGK-----EVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSC-----SHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCC-----HHHHHHHHHHHhhcccCC
Confidence 999999 99 889999988887766654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00099 Score=58.75 Aligned_cols=131 Identities=10% Similarity=0.073 Sum_probs=107.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+..+=..+.+.|++++|++.|++..+ +.|+ ...|+.+=.+|.+.|++++|+..|++..+.. +-+...|+.+-.+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 355566677889999999999999873 3454 7889999999999999999999999988753 2257899999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|.+.|++++|...|++..+.. +-+...|+.+-..|.+.|+ .++|.+.|+......|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~-----~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGN-----IPEAIASYRTALKLKP 142 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 999999999999999986641 2346789999999999999 8888888777654443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00023 Score=47.40 Aligned_cols=103 Identities=6% Similarity=-0.004 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 68 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
+.+...|..+-..+.+.|++++|...|.+..... +.+...|..+..+|...|++++|..+|+...+.. +.+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3457788889999999999999999999987653 3378889999999999999999999999987652 3457788888
Q ss_pred HHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 148 LKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 148 l~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
...+...|+ .+.|.+.++......|
T Consensus 91 a~~~~~~~~-----~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 91 AAALEAMKD-----YTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhh-----HHHHHHHHHHHHHhCC
Confidence 899999999 8888888887665544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00027 Score=59.00 Aligned_cols=130 Identities=6% Similarity=-0.021 Sum_probs=106.8
Q ss_pred hHHHHHHHHHhcCCH-hHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 37 DLVSVLAEFQRQDQV-FLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
.+..+-..+...|++ ++|...|+...+ ..| +...|..+=..|.+.|++++|...|.+..+. .|+...|..+-.
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVK---LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344555667778999 999999999973 234 4889999999999999999999999998876 478899999999
Q ss_pred HHhcC---------CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCC--------CchHHhHHHHHhhhcccccccCC
Q 029406 115 AFSDS---------GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY--------PEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 115 ~~~~~---------g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~--------g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|... |++++|...|++..+.. +-+...|..+-..|... |+ .++|.+.|+......|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~-----~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI-----SQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH-----HHHHHHHHHHHHHHCG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHhCC
Confidence 99999 99999999999987652 33577888888888766 77 8888888887766554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0005 Score=57.79 Aligned_cols=128 Identities=10% Similarity=0.072 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH-H
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII-R 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li-~ 114 (194)
+......+.+.|+++.|..+|+...+ +.|+ ...|......+.+.|+.++|..+|.+..+.. +.+...|.... -
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 44566777788999999999999983 4554 3589999999999999999999999887653 11222232222 1
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.+...|+.++|..+|+...+. .+-+...|..++..+.+.|+ .+.|..+|+.....
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~-----~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNE-----DNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTC-----HHHHHHHHHHHHHS
T ss_pred HHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCC-----HhhHHHHHHHHHhc
Confidence 233689999999999987654 23356888888888999999 88888888876554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00043 Score=54.87 Aligned_cols=126 Identities=7% Similarity=0.009 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-----CHHhHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWY-RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-----DQHTFGD 111 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-----~~~ty~~ 111 (194)
...+-..+...|++++|++++.... ..+- .-+...+..++..+.+.|+.+.|.+++.+|.+. .| +-.+...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHH
Confidence 3455566777899999999999886 3332 236788899999999999999999999999765 55 2455555
Q ss_pred HHHH--Hh--cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 112 IIRA--FS--DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 112 li~~--~~--~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|..+ .. ..+++..|+.+|+++.+. .|+..+-..+++++.+.|+ +++|.+.++.+.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~-----~~eAe~~L~~l~ 238 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN-----IAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC-----HHHHHHHHHHHH
Confidence 5555 22 234899999999998665 3554555666668888888 888888887543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00071 Score=51.21 Aligned_cols=136 Identities=8% Similarity=-0.109 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCC-CHHhHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLF-DQHTFGDI 112 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p-~~~ty~~l 112 (194)
..+...-..+.+.|++++|...|+...+...-.|. ...+..+-.+|.+.|++++|...|.+..... -.| ....+..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 34555666778899999999999999732221121 5677888888999999999999999998752 122 24567777
Q ss_pred HHHHhc--------CCChHHHHHHHHHhHhCCCCCChhhH-----------------HHHHHhhCCCCchHHhHHHHHhh
Q 029406 113 IRAFSD--------SGLPSEAMFIYNEMRSSPATPISLPF-----------------RVILKGLIPYPEFREKVKDDFLE 167 (194)
Q Consensus 113 i~~~~~--------~g~~~~a~~l~~~M~~~g~~p~~~ty-----------------~~ll~~~~~~g~~~~~~~~~a~~ 167 (194)
-.+|.+ .|++++|...|+...+.. +-+...+ ..+-..|.+.|+ .+.|..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~ 169 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERREL-----YEAAAV 169 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHH
Confidence 888888 999999999999987651 2222333 344667888899 888888
Q ss_pred hcccccccCC
Q 029406 168 LFPDMIVYDP 177 (194)
Q Consensus 168 ~~~~m~~~~~ 177 (194)
.|+......|
T Consensus 170 ~~~~~l~~~p 179 (261)
T 3qky_A 170 TYEAVFDAYP 179 (261)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHCC
Confidence 8887755443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0012 Score=48.82 Aligned_cols=114 Identities=9% Similarity=-0.111 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH-------Hh
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ-------HT 108 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~t 108 (194)
.+..+-.++...|++++|+..|+...+ ..| +...|..+-..|...|++++|...|.+..+.. +-+. ..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 119 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIY 119 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 344466677789999999999999973 345 46788889999999999999999999988753 2234 56
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC---hhhHHHHHHhhCCCCc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI---SLPFRVILKGLIPYPE 156 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~~ty~~ll~~~~~~g~ 156 (194)
|..+-..+...|++++|...|+...+. .|+ ...|..+-..|...|+
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHH
Confidence 888888899999999999999998765 454 4667777777766555
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00015 Score=48.01 Aligned_cols=107 Identities=7% Similarity=0.042 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC--CCCC----hhhH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP--ATPI----SLPF 144 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~----~~ty 144 (194)
...|..+-..+...|++++|...|.+..... +.+...+..+...|...|++++|..+|+...... ..++ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567778888999999999999999988764 4477889999999999999999999999886542 1223 6778
Q ss_pred HHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhh
Q 029406 145 RVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFE 183 (194)
Q Consensus 145 ~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 183 (194)
..+...+...|+ .+.|.+.++......|.+++..
T Consensus 83 ~~la~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~ 116 (131)
T 1elr_A 83 ARIGNSYFKEEK-----YKDAIHFYNKSLAEHRTPDVLK 116 (131)
T ss_dssp HHHHHHHHHTTC-----HHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhcc-----HHHHHHHHHHHHHhCCCHHHHH
Confidence 888888999999 8999999988776666555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00029 Score=45.71 Aligned_cols=102 Identities=6% Similarity=-0.040 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...+..+-..+...|++++|...|.+..... +.+...+..+...|.+.|++++|...++...+.. +.+...|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567778888999999999999999987753 3377889999999999999999999999987652 335778888889
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
.+...|+ .+.|.+.++......|.
T Consensus 81 ~~~~~~~-----~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNR-----FEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHTTCTT
T ss_pred HHHHHhh-----HHHHHHHHHHHHHcCCC
Confidence 9999999 88899988877665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0014 Score=44.10 Aligned_cols=96 Identities=7% Similarity=-0.111 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|+++.|...|+.... . .+.+...|..+-..|...|++++|...|.+..... +-+...|..+-.+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAIT-R-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHh-h-CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 4455666778889999999999998863 2 23357788888888999999999999999887754 3367788899999
Q ss_pred HhcCCChHHHHHHHHHhHh
Q 029406 116 FSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~ 134 (194)
|...|++++|...|....+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0014 Score=48.73 Aligned_cols=134 Identities=7% Similarity=0.010 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHH------------------hCCCHHHHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM-FFYRDMLMMLA------------------RNKKVVEAKQVWED 96 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~------------------~~g~~~~a~~l~~~ 96 (194)
..+..+-.++.+.|++++|+..|+...+...-.+.. ..+..+-.++. ..|++++|...|.+
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 456677788899999999999999997433333332 12222222222 35789999999999
Q ss_pred HHhcCCCCCHH-hH-----------------HHHHHHHhcCCChHHHHHHHHHhHhCCCCCC----hhhHHHHHHhhCCC
Q 029406 97 LKREEVLFDQH-TF-----------------GDIIRAFSDSGLPSEAMFIYNEMRSSPATPI----SLPFRVILKGLIPY 154 (194)
Q Consensus 97 m~~~g~~p~~~-ty-----------------~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~----~~ty~~ll~~~~~~ 154 (194)
+.+. .|+.. .+ -.+-..|.+.|+++.|...|+.+.+. .|+ ...+..+..++.+.
T Consensus 122 ~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 122 LVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHT
T ss_pred HHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHc
Confidence 8865 23321 11 23455788899999999999998765 233 25677888899999
Q ss_pred CchHHhHHHHHhhhcccccccCCc
Q 029406 155 PEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 155 g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
|+ .+.|.+.++.+...+|.
T Consensus 198 g~-----~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 198 QM-----NAQAEKVAKIIAANSSN 216 (225)
T ss_dssp TC-----HHHHHHHHHHHHHCCSC
T ss_pred CC-----cHHHHHHHHHHHhhCCC
Confidence 99 88888888876655543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00087 Score=51.97 Aligned_cols=135 Identities=13% Similarity=-0.020 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcC--C--CCC-H
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARN-KKVVEAKQVWEDLKREE--V--LFD-Q 106 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g--~--~p~-~ 106 (194)
.+..+-..|.+.|++++|+..|+....-..-..+ ..+++.+=..|... |++++|+..|++..+.. . .+. .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4556777788899999999999887531111111 45788888899986 99999999999877532 1 111 4
Q ss_pred HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCC-CCh-----hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPAT-PIS-----LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 107 ~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~-p~~-----~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.+|+.+-..|.+.|++++|...|+...+..-. +.. .+|..+..++...|+ .+.|...++......
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-----AVAAARTLQEGQSED 229 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-----HHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhC
Confidence 57899999999999999999999998765322 221 156667777888899 888888877665433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0012 Score=46.32 Aligned_cols=96 Identities=11% Similarity=-0.035 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-..+.+.|++++|+..|+...+ . .+-+...|..+-.+|.+.|++++|+..|.+..+.. +-+...|..+-.+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS-I-APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566678889999999999999973 2 23368889999999999999999999999998764 33688999999999
Q ss_pred hcCCChHHHHHHHHHhHhC
Q 029406 117 SDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~ 135 (194)
.+.|++++|...|+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999998654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0017 Score=43.28 Aligned_cols=95 Identities=14% Similarity=-0.044 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+...-..+.+.|++++|...|+...+ . .+.+...|..+-.+|.+.|++++|+..|.+..+.. +-+...|..+-.+|.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIK-R-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445567789999999999999873 2 23467888889999999999999999999888764 336778999999999
Q ss_pred cCCChHHHHHHHHHhHhC
Q 029406 118 DSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~ 135 (194)
..|++++|...|+...+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999987553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0013 Score=45.10 Aligned_cols=94 Identities=7% Similarity=-0.098 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..+-..+.+.|++++|...|+.... . -+.+...|..+=.+|.+.|++++|...|.+..... +-+...|..+-.+|..
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCM-L-DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3455567788999999999999873 1 23367788888888999999999999999888764 3356678888899999
Q ss_pred CCChHHHHHHHHHhHhC
Q 029406 119 SGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~ 135 (194)
.|++++|...|+...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0011 Score=46.77 Aligned_cols=111 Identities=12% Similarity=-0.033 Sum_probs=90.1
Q ss_pred CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 67 YRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 67 ~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
+.|+ ...+..+=..+.+.|++++|...|++..... +-+...|..+-.+|.+.|++++|...|+...... +-+...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHH
Confidence 3343 4456666778889999999999999998764 3378899999999999999999999999987652 33577888
Q ss_pred HHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhhh
Q 029406 146 VILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFED 184 (194)
Q Consensus 146 ~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 184 (194)
.+-.+|...|+ .++|...|+......|.+++-+.
T Consensus 109 ~lg~~~~~lg~-----~~eA~~~~~~al~l~~~~~~~~~ 142 (151)
T 3gyz_A 109 HTGQCQLRLKA-----PLKAKECFELVIQHSNDEKLKIK 142 (151)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999 99999999998877776664443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0029 Score=44.03 Aligned_cols=114 Identities=8% Similarity=-0.055 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+..+-..|.+.|++++|++.|+...+ +.| +...|..+=..|.+.|++++|...|.+..+.. +-+...|..+-..
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 108 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAEL 108 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345667778889999999999999873 334 57888888899999999999999999887753 2257788889999
Q ss_pred HhcCCChHHHHHH-HHHhHhCCCCC-ChhhHHHHHHhhCCCCc
Q 029406 116 FSDSGLPSEAMFI-YNEMRSSPATP-ISLPFRVILKGLIPYPE 156 (194)
Q Consensus 116 ~~~~g~~~~a~~l-~~~M~~~g~~p-~~~ty~~ll~~~~~~g~ 156 (194)
|.+.|+++++... ++...+- .| +...|...-..+...|+
T Consensus 109 ~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 109 LCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 9999998776654 4665443 33 45566665555555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0014 Score=54.51 Aligned_cols=134 Identities=7% Similarity=-0.044 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-------------MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 104 (194)
+...=..+.+.|++++|...|+...+...-.++ ...|+.+=.+|.+.|++++|+..|.+..+.. +-
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~ 349 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA 349 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 344556778899999999999998732211111 5788888899999999999999999998764 33
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+...|..+-.+|...|++++|...|+...+.. +-+...|..+-..+.+.|+..++.......+|..+.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~ 417 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFA 417 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 78889999999999999999999999987652 334567777777787777744444444455555543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0005 Score=53.35 Aligned_cols=146 Identities=8% Similarity=-0.010 Sum_probs=101.4
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
.+..++.... +.....+..+-..+...|++++|...|+.... ..| +...+..+-..|.+.|++++|..++++...
T Consensus 104 ~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 104 AIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 4555555543 12223455666777889999999999999973 234 577888899999999999999999997755
Q ss_pred cCCCCCHHhHHHHHH-HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 100 EEVLFDQHTFGDIIR-AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 100 ~g~~p~~~ty~~li~-~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
. .|+......... .+...+..+.|...|+..... -+.+...+..+-..+...|+ .++|...+.......|.
T Consensus 180 ~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~-----~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 180 Q--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGR-----NEEALELLFGHLRXDLT 251 (287)
T ss_dssp G--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTT
T ss_pred h--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHccc-----HHHHHHHHHHHHhcccc
Confidence 4 455443322222 255667777788888777655 24456778888888888888 78888887776655443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00016 Score=48.18 Aligned_cols=104 Identities=6% Similarity=-0.116 Sum_probs=73.9
Q ss_pred hcCCHhHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIW--YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
..|++++|+..|+... ..+ -+-+...|..+-..|.+.|++++|+..|.+..+.. +-+...+..+-.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHH
Confidence 4578889999999987 332 12346677888888999999999999999988764 2257788889999999999999
Q ss_pred HHHHHHHhHhC-CCCCChhhHHHHHHhhC
Q 029406 125 AMFIYNEMRSS-PATPISLPFRVILKGLI 152 (194)
Q Consensus 125 a~~l~~~M~~~-g~~p~~~ty~~ll~~~~ 152 (194)
|...|+..... .-.|+...|...+..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999987554 33344555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0028 Score=44.11 Aligned_cols=95 Identities=8% Similarity=-0.088 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|++++|...|+.... . -+.+...|..+=.+|.+.|++++|+..|.+..... +-+...|..+-.+|.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCV-L-DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH-c-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34456667789999999999999863 1 23367788888888999999999999999988754 235678888999999
Q ss_pred cCCChHHHHHHHHHhHhC
Q 029406 118 DSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~ 135 (194)
..|++++|...|+...+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0041 Score=49.22 Aligned_cols=134 Identities=10% Similarity=-0.006 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCC
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-----DMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFD 105 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~ 105 (194)
...+...+..+.+.|+++.|.+.++.|.+ ..| +-.+...|..++.. .+.+.+|..+|+++... .|+
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~ 210 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPT 210 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCC
Confidence 34455778899999999999999999973 456 35666666666444 34899999999998654 456
Q ss_pred HHhHHHHHHHHhcCCChHHHHHHHHHhHhC-----C----CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-----P----ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 106 ~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-----g----~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
..+-..+++++.+.|++++|...++.+.+. . -+-|..+.-.+|......|+ .+.++++++....
T Consensus 211 ~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-------~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 211 WKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-------DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-------TTHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-------HHHHHHHHHHHhC
Confidence 445556666999999999999999976542 1 12345666344433333454 3345555555544
Q ss_pred Cchh
Q 029406 177 PPED 180 (194)
Q Consensus 177 ~~~~ 180 (194)
|...
T Consensus 284 P~hp 287 (310)
T 3mv2_B 284 HEHA 287 (310)
T ss_dssp CCCH
T ss_pred CCCh
Confidence 4433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0016 Score=49.27 Aligned_cols=140 Identities=12% Similarity=0.122 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh--------CCCHHHHHHHHHHHHhcCCCCC-
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLAR--------NKKVVEAKQVWEDLKREEVLFD- 105 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~--------~g~~~~a~~l~~~m~~~g~~p~- 105 (194)
..+..+-.++.+.|++++|...|+...+...-.|. ...+..+-.++.+ .|++++|...|.+..... |+
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~ 130 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNH 130 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCc
Confidence 34556777788999999999999999843322333 4556667777777 999999999999988753 22
Q ss_pred HHhH-----------------HHHHHHHhcCCChHHHHHHHHHhHhCC-CCC-ChhhHHHHHHhhCCCCch-----HHhH
Q 029406 106 QHTF-----------------GDIIRAFSDSGLPSEAMFIYNEMRSSP-ATP-ISLPFRVILKGLIPYPEF-----REKV 161 (194)
Q Consensus 106 ~~ty-----------------~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p-~~~ty~~ll~~~~~~g~~-----~~~~ 161 (194)
.... -.+-..|.+.|++++|...|+...+.. -.| ....+..+..+|...|+. ....
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~ 210 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER 210 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch
Confidence 2222 455788999999999999999987641 111 234666666777655211 1122
Q ss_pred HHHHhhhcccccccCC
Q 029406 162 KDDFLELFPDMIVYDP 177 (194)
Q Consensus 162 ~~~a~~~~~~m~~~~~ 177 (194)
.++|...++......|
T Consensus 211 ~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 211 YRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCC
Confidence 7888888887765444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0052 Score=47.37 Aligned_cols=132 Identities=8% Similarity=-0.015 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCCC--HH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM----FFYRDMLMMLARNKKVVEAKQVWEDLKREE---VLFD--QH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~--~~ 107 (194)
.+...+..+...|++++|.+.++...+.....++. ..+..+-..+...|++++|+..+.+..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34566778889999999999998876322221111 223445566778899999999999887532 2222 45
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCCCC--ChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPATP--ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p--~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+|+.+-..|...|++++|...|++..+ .+-.+ ...+|..+-..|...|+ .++|.+.++...
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-----y~~Al~~~~kal 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-----YEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-----HHHHHHHHHHHH
Confidence 899999999999999999999998752 22122 22588888899999999 777777776543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00053 Score=45.21 Aligned_cols=101 Identities=10% Similarity=0.017 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...+..+-..+...|++++|...|.+..... +.+...|..+...|...|++++|...+...... .+.+...|..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHH
Confidence 45677788888999999999999999988753 337888999999999999999999999998765 2345778888888
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.+...|+ .+.|...++......|
T Consensus 89 ~~~~~~~-----~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 89 ALSSLNK-----HVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHST
T ss_pred HHHHhCC-----HHHHHHHHHHHHhcCc
Confidence 9999999 8888888887665544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0014 Score=43.55 Aligned_cols=95 Identities=8% Similarity=-0.115 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----HHhHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD----QHTFGDII 113 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ty~~li 113 (194)
..+-..+...|++++|...|+...+...-.|. ...+..+-..|.+.|++++|...|.+..... |+ ...+..+-
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 34455677899999999999998742221121 1466777788889999999999999988753 32 56788888
Q ss_pred HHHhcCCChHHHHHHHHHhHhC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.+|.+.|++++|...|+.....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00029 Score=57.46 Aligned_cols=133 Identities=7% Similarity=0.023 Sum_probs=67.3
Q ss_pred HHHHHHHhcCC-HhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 40 SVLAEFQRQDQ-VFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 40 ~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
.+-..+...|+ +++|+..|+.... +.| +...|+.+=.++.+.|++++|+..|++..+.. +-+...|..+-.++.
T Consensus 136 ~~g~~l~~~g~d~~eAl~~~~~al~---l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~ 211 (382)
T 2h6f_A 136 FRRVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQ 211 (382)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH
Confidence 33344445554 6666666665542 222 34555555555555566666666666555443 114555666666666
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC-CCchHHhHHHHHhhhcccccccCC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP-YPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~-~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+.|++++|+..|+.+.+.. +-+...|+.+-..+.. .|...+++.+.+.+.++......|
T Consensus 212 ~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P 271 (382)
T 2h6f_A 212 EFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 271 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred HcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC
Confidence 6666666666666655431 2234555555555554 333122223333455555544443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0068 Score=46.72 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=86.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh----c-CCCCC-HHhHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKR----E-EVLFD-QHTFG 110 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~-g~~p~-~~ty~ 110 (194)
+...+...+++++|+..|+...+...-.++ ..+|+.+-..|...|++++|+..|.+..+ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444555678999999999999842222233 34689999999999999999999998874 1 22222 34889
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHh----CCCCCC-hhhHHHHHHhhCCCCc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRS----SPATPI-SLPFRVILKGLIPYPE 156 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~~ty~~ll~~~~~~g~ 156 (194)
.+-..|.+.|++++|...+++..+ .+..+. ..+|..+-..+.+.|+
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999987643 333333 5788888888888884
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00057 Score=46.04 Aligned_cols=102 Identities=8% Similarity=-0.020 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
.+...|..+-..+...|++++|...|.+..... +.+...|..+-.+|...|++++|...|+...... +-+...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467888889999999999999999999987764 3367899999999999999999999999987652 33577888888
Q ss_pred HhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 149 KGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..+...|+ .+.|...+.......|
T Consensus 85 ~~~~~~~~-----~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 85 QCQLEMES-----YDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHTTC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-----HHHHHHHHHHHHHHCh
Confidence 99999999 8888888877654443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00044 Score=46.96 Aligned_cols=99 Identities=7% Similarity=-0.018 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
.+...=..|.+.|++++|+..|.+..+.. +.+...|..+-.+|.+.|++++|...|+...+.. +.+...|..+-.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444567889999999999999988764 3478899999999999999999999999987642 345778888999999
Q ss_pred CCCchHHhHHHHHhhhcccccccCCc
Q 029406 153 PYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 153 ~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
..|+ .++|.+.|+......|.
T Consensus 93 ~~~~-----~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 93 AMRE-----WSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HTTC-----HHHHHHHHHHHHHHCTT
T ss_pred HCCC-----HHHHHHHHHHHHHHCcC
Confidence 9999 89999998877665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0021 Score=46.50 Aligned_cols=117 Identities=10% Similarity=-0.068 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--------------MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 103 (194)
+..+-..+.+.|++++|...|+.......-.|+ ...|..+-.+|.+.|++++|+..+.+..... +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 445556677899999999999999732222221 2778888889999999999999999988763 3
Q ss_pred CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 104 p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.+...|..+-.+|...|++++|...|+...+.. +-+...+..+...+...++
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999986541 2345666666666665555
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00088 Score=45.45 Aligned_cols=102 Identities=7% Similarity=-0.160 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD----QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 144 (194)
.+...+..+-..+...|++++|...|.+..+. .|+ ...|..+-.+|...|++++|...++..... .+.+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHH
Confidence 46778888899999999999999999998765 466 688999999999999999999999988665 23356778
Q ss_pred HHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 145 RVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 145 ~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
..+...+...|+ .+.|...++......|.
T Consensus 103 ~~~a~~~~~~~~-----~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 103 YRRSQALEKLGR-----LDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHTC-----HHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHHcCCC
Confidence 888888888899 88888888877655543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0013 Score=48.36 Aligned_cols=127 Identities=8% Similarity=0.016 Sum_probs=61.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+-..+.+.|++++|+..|+...+ ..| +...|..+=..|...|++++|...|++..+.. +-+..+|..+-..|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34445556666666666666652 223 45556666666666666666666666665542 22445555555555444
Q ss_pred CCh--HHHHHHHHHhHhCCCCCChhh--HHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 120 GLP--SEAMFIYNEMRSSPATPISLP--FRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 120 g~~--~~a~~l~~~M~~~g~~p~~~t--y~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
|.. ..+...+.... .|+... +...-.++...|+ .++|...|+......|..+
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~-----~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTR-----YEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHT-----HHHHHHHHHHHTTTSCCHH
T ss_pred hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccC-----HHHHHHHHHHHHHhCCCHH
Confidence 322 22233333321 222222 1112222233444 6677777776665555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0041 Score=48.08 Aligned_cols=137 Identities=9% Similarity=0.008 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhc-CCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH-----
Q 029406 37 DLVSVLAEFQRQ-DQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ----- 106 (194)
Q Consensus 37 ~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----- 106 (194)
.+..+-..|... |++++|+..|+....-..-..+ ..+|+.+-..|.+.|++++|+..|++..+..-....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344566667775 9999999999988631111111 356888899999999999999999999875433221
Q ss_pred -HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC---h---hhHHHHHHhhC--CCCchHHhHHHHHhhhcccccccCC
Q 029406 107 -HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI---S---LPFRVILKGLI--PYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 107 -~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~---~ty~~ll~~~~--~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|..+..+|...|+++.|...|+...+- .|+ . ..+..++..+. ..++ .+.|...|+.+...+|
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQ-----LSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTT-----HHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHH-----HHHHHHHhccCCccHH
Confidence 25778888999999999999999997653 222 1 23445556554 4455 8888888988776666
Q ss_pred chh
Q 029406 178 PED 180 (194)
Q Consensus 178 ~~~ 180 (194)
...
T Consensus 272 ~~~ 274 (292)
T 1qqe_A 272 WKI 274 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00064 Score=47.78 Aligned_cols=99 Identities=10% Similarity=-0.051 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...|..+-..|.+.|++++|+..|.+..+.. +-+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677788888999999999999999988764 3378899999999999999999999999987652 335788888999
Q ss_pred hhCCCCchHHhHHHHHhhhccccccc
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.|...|+ .+.|.+.|+.....
T Consensus 88 ~~~~~g~-----~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMAD-----YKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHH
T ss_pred HHHHccC-----HHHHHHHHHHHHHh
Confidence 9999999 88888887766443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00063 Score=57.69 Aligned_cols=121 Identities=5% Similarity=-0.135 Sum_probs=85.2
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
.|++++|.+.|++..+ -.+-+...|..+-..|.+.|++++|...|++..+.. +-+...|..+-.+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788899999998862 122357888999999999999999999999988753 3367889999999999999999999
Q ss_pred HHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 128 l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|++..+.. +-+...|..+-..|.+.|+ .++|.+.++......|
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~p 122 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQ-----AEAAAAAYTRAHQLLP 122 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 999987652 3457788899999999999 8888888887655444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0011 Score=46.22 Aligned_cols=100 Identities=10% Similarity=-0.087 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...+..+-..+.+.|++++|...|.+..... +.+...|..+-.+|...|++++|...|+...... +-+...|..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34566677778889999999999999987654 3378889999999999999999999999987652 335678888888
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccC
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
+|...|+ .++|.+.|+......
T Consensus 98 ~~~~~g~-----~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGE-----LAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHcCC-----HHHHHHHHHHHHHHC
Confidence 9999999 888888888765543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00096 Score=45.82 Aligned_cols=99 Identities=11% Similarity=-0.041 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
...+..+-..+.+.|++++|...|.+..... +.+...|..+-.+|.+.|++++|...|+...... +-+...|..+-.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445556677888999999999999988754 3377889999999999999999999999987652 3456778888888
Q ss_pred hCCCCchHHhHHHHHhhhcccccccC
Q 029406 151 LIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
|...|+ .+.|.+.|+......
T Consensus 96 ~~~~g~-----~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGD-----LDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHcCC-----HHHHHHHHHHHHHhC
Confidence 999999 888888888765443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0041 Score=50.58 Aligned_cols=128 Identities=10% Similarity=0.009 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|++++|+..|+...+ . -+-+...|..+-.++.+.|++++|+..|+++.+..-. +...|+.+-.+|.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~-l-dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILN-Q-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH-h-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33445556677888999999988873 1 2235778888888888889999999999888876533 6778888888888
Q ss_pred c-CCChHHH-----HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 D-SGLPSEA-----MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~-~g~~~~a-----~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+ .|..++| +..|+..... -+-+...|+.+...+...|. ...+.+.+.+..+
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~---~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGL---SKYPNLLNQLLDL 302 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCG---GGCHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCc---cchHHHHHHHHHh
Confidence 8 5655777 4777777765 23346788888888888775 1134444444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0046 Score=41.71 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=72.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCC----HHhHHHHHH
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFD----QHTFGDIIR 114 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~ty~~li~ 114 (194)
=..+.+.|++++|++.|+...+ +.| +...|+.+=.+|.+.|++++|+..|.+..+.. ..++ ..+|..+-.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3456788999999999998873 234 57778888888999999999999998877532 2222 246777778
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
+|...|++++|...|+..... .||..+..
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 888889999999998886543 35544433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0046 Score=47.68 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=92.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcC--CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCC-----HHhHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIW--YRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKRE-EVLFD-----QHTFG 110 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-----~~ty~ 110 (194)
+-..+...|++++|...|+...+... ..+. ..+|+.+=..|...|++++|...|.+.... ...|+ ..+|+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 33445677899999999998862111 1122 458889999999999999999999988732 11222 26899
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHh----CCCCC-ChhhHHHHHHhhCCCCchHHhH---HHHHhhhcc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRS----SPATP-ISLPFRVILKGLIPYPEFREKV---KDDFLELFP 170 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~----~g~~p-~~~ty~~ll~~~~~~g~~~~~~---~~~a~~~~~ 170 (194)
.+-..|.+.|++++|...+++..+ .+... -..+|..+-..|.+.|+..+++ .+.|..+++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998643 22222 2567888888899999843331 345555554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00014 Score=50.86 Aligned_cols=105 Identities=9% Similarity=-0.158 Sum_probs=82.7
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
..|+++.|+..++.... ..|+ ...+..+=..|.+.|++++|...|.+..+.. +-+..+|..+-.+|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 45788889888887741 2232 4455567788999999999999999988764 33788999999999999999999
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
...|+...+.. +-+..+|..+-..|.+.|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 99999987652 2246788888888888777
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.012 Score=41.45 Aligned_cols=126 Identities=4% Similarity=0.020 Sum_probs=96.6
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-HhcCCCh-
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA-FSDSGLP- 122 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~- 122 (194)
+...|++++|...|+...+. .+.+...|..+-..|...|++++|...|.+..... +.+...|..+..+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 45678899999999988632 23467889999999999999999999999988654 2367778888888 7899998
Q ss_pred -HHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 123 -SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 123 -~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
++|..+|+...+.. +-+...|..+...+...|+ .+.|...++......|..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQAN-----YAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccc-----HHHHHHHHHHHHhhCCCC
Confidence 99999999987652 3346788888889999999 888888888876655543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0034 Score=46.05 Aligned_cols=94 Identities=9% Similarity=0.067 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
++.+=..|.+.|++++|...|.+..+.. +-+...|..+-..|...|++++|...|+...+.. +-+..+|..+-..|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3446667778888888888888877653 2367788888888888888888888888876642 3345667777666654
Q ss_pred CCchHHhHHHHHhhhcccc
Q 029406 154 YPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 154 ~g~~~~~~~~~a~~~~~~m 172 (194)
.|+ .....+...+...
T Consensus 135 ~~~---~~~~~~~~~~~~~ 150 (208)
T 3urz_A 135 TAE---QEKKKLETDYKKL 150 (208)
T ss_dssp HHH---HHHHHHHHHHC--
T ss_pred HhH---HHHHHHHHHHHHH
Confidence 433 1133444445543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0025 Score=50.97 Aligned_cols=130 Identities=8% Similarity=-0.018 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CCC----HH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-LFD----QH 107 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~ 107 (194)
+..+-..+...|+++.|...++...+-..-.++ ..+++.+=..|...|++++|...|.+.....- .++ ..
T Consensus 146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 225 (383)
T 3ulq_A 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 345566677789999999999887632222222 45777788889999999999999988774321 112 24
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCC-CCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPA-TPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~-~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+|..+-.+|...|++++|...|++..+ .+. +....++..+-..+.+.|+ .+.|.+.++..
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a 290 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-----IDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 788899999999999999999998765 233 3346778888899999999 77777776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0029 Score=42.37 Aligned_cols=96 Identities=9% Similarity=-0.030 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+...-..+.+.|++++|...|+...+ . -+-+...|..+=.++.+.|++++|+..|++..+.. +-+...+..+-.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ-K-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555677889999999999999873 1 22367788888888889999999999999887763 22667888899999
Q ss_pred hcCCChHHHHHHHHHhHhC
Q 029406 117 SDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~ 135 (194)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999987653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0022 Score=44.28 Aligned_cols=99 Identities=7% Similarity=-0.068 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
..|..+-..+...|++++|...|.+..... +.+..+|..+..+|...|++++|...|+...+.. +.+...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667778889999999999999987753 3368889999999999999999999999987652 44577888888899
Q ss_pred CCCCchHHhHHHHHhhhcccccccCC
Q 029406 152 IPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 152 ~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
...|+ .+.|.+.++......|
T Consensus 92 ~~~~~-----~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 92 MALGK-----FRAALRDYETVVKVKP 112 (166)
T ss_dssp HHTTC-----HHHHHHHHHHHHHHST
T ss_pred HHhcc-----HHHHHHHHHHHHHhCC
Confidence 99999 8888888887765444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0018 Score=43.11 Aligned_cols=98 Identities=12% Similarity=-0.026 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
..|..+=..+.+.|++++|+..|.+..+.. +.+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455666677889999999999999988764 3378899999999999999999999999987652 33567888888899
Q ss_pred CCCCchHHhHHHHHhhhcccccccC
Q 029406 152 IPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 152 ~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
...|+ .+.|.+.++......
T Consensus 83 ~~~~~-----~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKE-----YASALETLDAARTKD 102 (126)
T ss_dssp HHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHhC-----HHHHHHHHHHHHHhC
Confidence 99999 888888888765544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00097 Score=52.95 Aligned_cols=131 Identities=4% Similarity=-0.184 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCC-CHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLF-DQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p-~~~ 107 (194)
.+..+-..+...|++++|...|+...+...-.++ ..+|..+-..|...|++++|...+.+..... ..+ ...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3455667778899999999999988632222233 3478888889999999999999999876432 111 156
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC----CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS----PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++..+-..|...|++++|...|+...+. +..+ ...+|..+...|...|+ .+.|.+.++..
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a 333 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN-----HDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 8889999999999999999999987542 2221 15677888888888898 66666666553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0018 Score=44.04 Aligned_cols=130 Identities=4% Similarity=-0.171 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCC-CHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLF-DQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p-~~~ 107 (194)
.+..+-..+...|++++|...|+.......-.++ ...+..+-..|...|++++|...+.+..... -.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445666677889999999999887632111122 2477888888999999999999999876532 111 245
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
++..+-..|...|++++|...++...+ .+..+ ...++..+...+...|+ .+.|.+.++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~ 154 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-----HDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-----HHHHHHHHHH
Confidence 788888999999999999999988643 22221 24567777788888888 7777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.015 Score=42.04 Aligned_cols=99 Identities=8% Similarity=-0.100 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------------
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE------------- 101 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------------- 101 (194)
...+..+-..+.+.|++++|...|+.... . .+.+...|..+-.+|...|++++|...|.+..+..
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSIN-R-DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 34566777888899999999999999973 2 23467889999999999999999999999988743
Q ss_pred -CCC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 102 -VLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 102 -~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
..| +...|..+-.+|.+.|++++|...|+...+.
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 111 2367889999999999999999999998765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0061 Score=57.25 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..++.+|.+.|++++|.++|..-++ .. ++....+.+..+|++.+++++...+. -.|+...|..+-..|.
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk-~~--~e~~Idt~LafaYAKl~rleele~fI-------~~~n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCY 1206 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-hc--ccccccHHHHHHHHhhcCHHHHHHHH-------hCCCHHHHHHHHHHHH
Confidence 44455555555555555555544331 11 22222222444444444443322221 0223333444444444
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
..|+++.|..+|... ..|..+...|++.|+ .+.|.+.++
T Consensus 1207 ~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge-----~q~AIEaar 1245 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE-----YQAAVDGAR 1245 (1630)
T ss_pred hcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC-----HHHHHHHHH
Confidence 445555555555442 356666666666666 555544444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0067 Score=44.91 Aligned_cols=132 Identities=8% Similarity=-0.031 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCH-HhHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQ-HTFGDIIR 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~-~ty~~li~ 114 (194)
+...-..+.+.|++++|...|+.+.+.....|. ...+..+-.+|.+.|++++|+..|++..+.. -.|.. ..+-.+-.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 344555678899999999999999843322232 3567778899999999999999999988653 22221 12333333
Q ss_pred HHh------------------cCCChHHHHHHHHHhHhCCCCCCh-hhHH-----------------HHHHhhCCCCchH
Q 029406 115 AFS------------------DSGLPSEAMFIYNEMRSSPATPIS-LPFR-----------------VILKGLIPYPEFR 158 (194)
Q Consensus 115 ~~~------------------~~g~~~~a~~l~~~M~~~g~~p~~-~ty~-----------------~ll~~~~~~g~~~ 158 (194)
++. ..|+.++|...|+...+. -|+. ..+. .+-..|.+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~-- 162 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA-- 162 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--
Confidence 333 367899999999998775 2332 2222 33445667788
Q ss_pred HhHHHHHhhhcccccccC
Q 029406 159 EKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 159 ~~~~~~a~~~~~~m~~~~ 176 (194)
.+.|...|+.+....
T Consensus 163 ---~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 163 ---WVAVVNRVEGMLRDY 177 (225)
T ss_dssp ---HHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHHC
Confidence 788888888765443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.004 Score=52.24 Aligned_cols=129 Identities=10% Similarity=-0.004 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMM-LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
.+......+.+.|+++.|.++|+...+ . .|+ ...|...... +...|++++|..+|+...+.. +-+...|..++.
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~-~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~ 433 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKARE-D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh-c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 355566666778999999999999973 2 232 2333222222 336899999999999887653 236789999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCC-CCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSP-ATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g-~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
.+.+.|+.++|..+|+.....+ ..|+ ...|...+.-....|+ .+.+..++..+..
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~-----~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-----LASILKVEKRRFT 491 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC-----HHHHHHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 9999999999999999987763 3443 3477777777777888 6666666665543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0018 Score=49.59 Aligned_cols=132 Identities=5% Similarity=-0.152 Sum_probs=97.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CCC----HH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-LFD----QH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~ 107 (194)
.+..+-..+...|++++|...|+...+...-.++ ..++..+-..|...|++++|...+.+.....- .++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4456667778899999999999988532111122 34788888999999999999999998764321 112 56
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC----CCC-CChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS----PAT-PISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~----g~~-p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
++..+-..|...|++++|...++..... +-. ....++..+...|...|+ .+.|.+.++...
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a~ 330 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-----HDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-----hHHHHHHHHHHH
Confidence 7888999999999999999999987542 211 124577788888998999 888888777543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0014 Score=47.08 Aligned_cols=132 Identities=7% Similarity=-0.089 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHh---hcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCC--C
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRK---EIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVLF--D 105 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p--~ 105 (194)
..+..+-..+...|++++|...|+.... ..+..| ....++.+=..|...|++++|...|.+.... +-.| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3445566677789999999999998863 122222 3556777888899999999999999877653 2111 2
Q ss_pred HHhHHHHHHHHhcCCChHHHHHHHHHhHh----CCCC-CChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRS----SPAT-PISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 106 ~~ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~-p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
...+..+-..|...|++++|...+++... .+.. .-..++..+-..+...|+ .+.|.+.+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a 173 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN-----LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC-----HHHHHHHHHHH
Confidence 45688888999999999999999988653 2221 113456777788888999 66666665543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0025 Score=50.93 Aligned_cols=130 Identities=10% Similarity=-0.033 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCC-CCHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-----DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVL-FDQH 107 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-p~~~ 107 (194)
+..+-..+...|+++.|...++...+...-.+ ...+++.+=..|...|++++|...|.+..+. +-. ....
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33455667788999999999888753222112 2457777888889999999999999877653 211 1235
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+++.+-.+|...|++++|...|++..+ .+.+....++..+-..+.+.|+ .+.|.+.++..
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a 287 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-----TQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 788888899999999999999998765 1223336778888888999999 66666666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0027 Score=42.10 Aligned_cols=96 Identities=7% Similarity=-0.070 Sum_probs=73.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCC-CC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC---hhhHHHHHHhh
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREEV-LF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI---SLPFRVILKGL 151 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g~-~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~~ty~~ll~~~ 151 (194)
+-..+.+.|++++|...|.+.....- .| ....+..+-.+|.+.|++++|...|+...... +-+ ...+..+-.++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 44567789999999999999887531 11 11477788899999999999999999987652 222 45677778888
Q ss_pred CCCCchHHhHHHHHhhhcccccccCCc
Q 029406 152 IPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 152 ~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
...|+ .+.|...|+......|.
T Consensus 87 ~~~g~-----~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 87 YGEGK-----NTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHTTC-----HHHHHHHHHHHHHHSTT
T ss_pred HHcCC-----HHHHHHHHHHHHHHCCC
Confidence 89999 89999998887655443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0015 Score=57.11 Aligned_cols=132 Identities=5% Similarity=-0.113 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|++++|...|+...+ . -+-+...|..+=.+|.+.|++++|...|++..+.. +-+...|..+-.+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAE-R-VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhc-c-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455566678889999999999999873 1 22357788888888999999999999999988764 2256788889999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|.+.|++++ ...|+...+.. +-+...|..+-..+.+.|+ .++|.+.++.....+|
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~-----~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGD-----RVGAVRTLDEVPPTSR 565 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHTSCTTST
T ss_pred HHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCC-----HHHHHHHHHhhcccCc
Confidence 999999999 99999876642 3356788888888999999 8888888887765554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.023 Score=41.73 Aligned_cols=52 Identities=12% Similarity=-0.011 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHhcCCC-CCHHhHHHHHHHHhc----CCChHHHHHHHHHhHhC
Q 029406 84 NKKVVEAKQVWEDLKREEVL-FDQHTFGDIIRAFSD----SGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~a~~l~~~M~~~ 135 (194)
.+++++|...|.+..+.|.. -+...+..|-..|.. .+++++|..+|+...+.
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 44455555555444443311 013344444444444 34455555555554444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0011 Score=55.45 Aligned_cols=117 Identities=7% Similarity=-0.072 Sum_probs=86.0
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
+.+.|++++|.+.|+...+ . .+-+...|..+-.+|.+.|++++|+..+.+..+.. +-+...|..+-.+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4578999999999999973 2 22358899999999999999999999999998763 3367889999999999999999
Q ss_pred HHHHHHHhHhCCCCCChhhHHHHHHh--hCCCCchHHhHHHHHhhhcc
Q 029406 125 AMFIYNEMRSSPATPISLPFRVILKG--LIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 125 a~~l~~~M~~~g~~p~~~ty~~ll~~--~~~~g~~~~~~~~~a~~~~~ 170 (194)
|...|++..+.. +-+...+..+-.+ +.+.|+ .++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~-----~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKA-----FERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHH-----HCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-----HHHHhcccc
Confidence 999999986642 2123344444433 665566 666666655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0022 Score=51.34 Aligned_cols=132 Identities=4% Similarity=-0.156 Sum_probs=97.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CC---CCHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VL---FDQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~---p~~~ 107 (194)
.+..+-..+...|++++|...|+...+...-.++ ...+..+-..|...|++++|...|++..... .. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445667778899999999999988632111122 3378888999999999999999998877532 11 1256
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC----CCC-CChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS----PAT-PISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~----g~~-p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
++..+-..|...|++++|...|+..... +.. ....+|..+...|...|+ .+.|.+.++...
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG-----HERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHH
Confidence 8889999999999999999999987542 211 124578888888999999 777777766543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0042 Score=48.41 Aligned_cols=131 Identities=6% Similarity=-0.077 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhh---cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCC-CHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKE---IWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLF-DQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p-~~~ 107 (194)
.+..+-..|.+.|++++|+..|+...+- .|-.+ -..+++.+=..|.. |++++|+..|.+..... -.+ -..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3445566677778888888888876421 11111 13466667777777 88888888888766421 111 145
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+|+.+-..|.+.|++++|...|++... .+..+. ..+|..+...+...|+ .+.|...|+...
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-----~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-----YVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHh
Confidence 788888888888888888888887654 222222 2255556666666788 677777666544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0075 Score=48.11 Aligned_cols=133 Identities=7% Similarity=-0.052 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CC-CCCHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EV-LFDQHT 108 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~-~p~~~t 108 (194)
+..+-..|...|++++|...|+...+...-.++ ..+++.+=..|...|++++|...|.+.... +. +....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 344556677789999999998887532111122 246777888888999999999999887762 33 335677
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhC----CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS----PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+..+-..|.+.|++++|...++...+. +-+.....+..+-..+...|+. ...+.|..+++..
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~al~~~~~~ 332 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE--EAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHC
Confidence 889999999999999999998876432 2222233456666777777762 4455666666644
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0034 Score=42.08 Aligned_cols=97 Identities=9% Similarity=0.038 Sum_probs=76.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
+..+-..+.+.|++++|...|++..+.. +-+...|..+-.++...|++++|...|+...+.. +-+...+..+-..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445567788999999999999988753 3377889999999999999999999999986652 3356788888888988
Q ss_pred CCchHHhHHHHHhhhcccccccCC
Q 029406 154 YPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 154 ~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|+ .++|...++......|
T Consensus 98 ~g~-----~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHN-----ANAALASLRAWLLSQP 116 (121)
T ss_dssp HHH-----HHHHHHHHHHHHC---
T ss_pred cCC-----HHHHHHHHHHHHHhCc
Confidence 888 8888888887655443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0018 Score=46.11 Aligned_cols=115 Identities=9% Similarity=-0.020 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM-LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
+..+-..+...|++++|...|+.... ..|+...+..+-.. +.+.+...+|...|++..+.. +-+...+..+-.+|
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~ 118 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQY 118 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44455556666777777777766642 11233222211111 111112223555666555432 12456666677777
Q ss_pred hcCCChHHHHHHHHHhHhCCCC-CChhhHHHHHHhhCCCCc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPAT-PISLPFRVILKGLIPYPE 156 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~-p~~~ty~~ll~~~~~~g~ 156 (194)
...|++++|...|+...+..=. .+...+..+...+...|+
T Consensus 119 ~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 119 NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 7777777777777766554211 124456666666666666
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0043 Score=41.87 Aligned_cols=105 Identities=6% Similarity=-0.017 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC--CCCCC----hhhHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS--PATPI----SLPFRV 146 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~----~~ty~~ 146 (194)
.+..+=..+.+.|++++|+..|.+..+.. +-+...|+.+-.+|.+.|++++|...|+...+. ...++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445567889999999999999988753 336788999999999999999999999987543 12222 235666
Q ss_pred HHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhh
Q 029406 147 ILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFE 183 (194)
Q Consensus 147 ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 183 (194)
+-..+...|+ .+.|.+.|+......|.+++..
T Consensus 89 lg~~~~~~~~-----~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQND-----LSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHhhCcCHHHHH
Confidence 6677888888 8899888887655555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0016 Score=46.70 Aligned_cols=120 Identities=10% Similarity=-0.014 Sum_probs=86.0
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----cCCC-CCHHhHHHHHHHHhcCC
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR----EEVL-FDQHTFGDIIRAFSDSG 120 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~-p~~~ty~~li~~~~~~g 120 (194)
...|++++|.+.++.+. . ........++.+-..|...|++++|...|.+... .+.. ....+++.+-..|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHH-T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 46789999999776665 2 2223577888888999999999999999988775 2222 24467888889999999
Q ss_pred ChHHHHHHHHHhHh----CCCCC--ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 121 LPSEAMFIYNEMRS----SPATP--ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 121 ~~~~a~~l~~~M~~----~g~~p--~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++++|...+++... .|-.| ....+..+-..+...|+ .+.|...++..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~a 133 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-----LAGARQEYEKS 133 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHH
Confidence 99999999988644 23122 24567777788888888 77777776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0016 Score=50.90 Aligned_cols=131 Identities=10% Similarity=-0.085 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAF 116 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~ 116 (194)
+.....+...|++++|.++|+.+. . ..|+......+=..|.+.+++++|+..|....... .|. ...+..+=.++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~-~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAP-V--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSC-C--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-h--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 345677888999999999999986 2 23544355555558889999999999998443322 111 24677788889
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCCh--hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPIS--LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~--~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
...|++++|+..|++.......|.. ......-.++.+.|+ .++|..+|+.+....|-
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-----~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-----ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCc
Confidence 9999999999999998754432542 234445556778888 99999999988766654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.018 Score=44.39 Aligned_cols=94 Identities=7% Similarity=-0.124 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+.+.|++++|...|+...+ . .+-+...|..+-..|.+.|++++|...+.+..+.. +-+...|..+-.+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAIT-R-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455667788999999999998873 2 22367788888888999999999999999887653 336778888899999
Q ss_pred cCCChHHHHHHHHHhHh
Q 029406 118 DSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~ 134 (194)
..|++++|...|....+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999998887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.11 Score=43.00 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=40.2
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc----C
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD----S 119 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~ 119 (194)
.+++++|...|+... ..+ +...+..|=..|.. .+++++|...|.+..+.| +...+..+-..|.. .
T Consensus 128 ~~~~~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 200 (490)
T 2xm6_A 128 KVDKAESVKWFRLAA-EQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVE 200 (490)
T ss_dssp CCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCC
Confidence 445555555555554 222 23334444444443 445555555555555443 44445555555554 4
Q ss_pred CChHHHHHHHHHhHhCC
Q 029406 120 GLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g 136 (194)
++.++|..+|+...+.|
T Consensus 201 ~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG 217 (490)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 55555555555544443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0045 Score=49.21 Aligned_cols=126 Identities=13% Similarity=0.026 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH------------------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF------------------FYRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~------------------~~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
+...-..+.+.|++++|...|+.... +.|+.. .|+.+=.+|.+.|++++|+..|.+..+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445566678999999999999763 335543 778888889999999999999999887
Q ss_pred cCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhC-CCCchHHhHHHHHhhhcccccc
Q 029406 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLI-PYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 100 ~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~-~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
.. +-+...|..+-.+|...|++++|...|+...+. .|+ ...+..+..... ..+. .+.+..++..|-.
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~-----~~~a~~~~~~~l~ 327 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL-----YQKQKEMYKGIFK 327 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhC
Confidence 53 337789999999999999999999999997654 343 334444433322 2233 5566667766643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.008 Score=48.54 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhc-------------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEI-------------WYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 103 (194)
+..+-..+.+.|++++|+..|+...+.. ...| +...|+.+-.+|.+.|++++|+..+.+..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4456667788999999999999886200 0222 45678888888999999999999999998753 2
Q ss_pred CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 104 p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
-+...|..+-.+|.+.|++++|...|+...+.. +-+...+..+...+...++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999986641 2245566666666655444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0016 Score=52.08 Aligned_cols=58 Identities=10% Similarity=-0.140 Sum_probs=25.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhh---cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKE---IWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
+-..+...|++++|...|+..... .+..| ....+..+-..|...|++++|...|.+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333444455555555555544311 01111 23344444445555555555555554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.011 Score=41.09 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhc------C----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEI------W----------YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~----------~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
+...=..+.+.|+++.|+..|....... . .+.+...|..+-.+|.+.|++++|+..+.+..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3445556778999999999999886310 0 11234678888888999999999999999988764
Q ss_pred CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 102 ~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+.+...|..+-.+|...|++++|...|......
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 346788999999999999999999999987654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.064 Score=39.24 Aligned_cols=130 Identities=7% Similarity=-0.094 Sum_probs=96.9
Q ss_pred hchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCCCCHHh
Q 029406 33 LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK----KVVEAKQVWEDLKREEVLFDQHT 108 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~l~~~m~~~g~~p~~~t 108 (194)
.....+..+=..|...+++++|+..|+... +.| +...++.|=..|.. + ++++|...|.+..+.| +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAA-AQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 334455555566667899999999999997 444 45566666666666 6 8999999999998877 6778
Q ss_pred HHHHHHHHhc----CCChHHHHHHHHHhHhCCCC-CChhhHHHHHHhhCC----CCchHHhHHHHHhhhccccccc
Q 029406 109 FGDIIRAFSD----SGLPSEAMFIYNEMRSSPAT-PISLPFRVILKGLIP----YPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 109 y~~li~~~~~----~g~~~~a~~l~~~M~~~g~~-p~~~ty~~ll~~~~~----~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
+..|-..|.. .+++++|..+|+...+.|.. .+...+..|-..|.. .++ .+.|.++|+.....
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d-----~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED-----DVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC-----HHHHHHHHHHHHHc
Confidence 8888888887 89999999999998877642 114556666555554 556 88888888876554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.017 Score=45.69 Aligned_cols=95 Identities=3% Similarity=-0.124 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-.++.+.|++++|+..|+...+ . .+.+...|..+=.+|...|++++|...|.+..+.. +-+...+..+-.+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~-~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALE-L-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4556677788899999999999999973 2 23468889999999999999999999999988763 3367789999999
Q ss_pred HhcCCChHHHH-HHHHHhH
Q 029406 116 FSDSGLPSEAM-FIYNEMR 133 (194)
Q Consensus 116 ~~~~g~~~~a~-~l~~~M~ 133 (194)
+.+.|+.+++. .+|..|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 99999998884 4666664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.13 Score=42.48 Aligned_cols=126 Identities=5% Similarity=-0.125 Sum_probs=80.6
Q ss_pred HHHHHHHHHh----cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHHhH
Q 029406 38 LVSVLAEFQR----QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQHTF 109 (194)
Q Consensus 38 ~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty 109 (194)
+..+=..|.. .+++++|...|+... ..+ +...+..|=..|.. .+++++|...|.+..+.| +...+
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 150 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ 150 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3344444555 677788888887776 333 44555555556666 677888888888777766 55666
Q ss_pred HHHHHHHhc----CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC----CCchHHhHHHHHhhhcccccccCCc
Q 029406 110 GDIIRAFSD----SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP----YPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 110 ~~li~~~~~----~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~----~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
..|-..|.. .+++++|..+|+...+.| +...+..|-..|.. .++ .+.|.++|+.....+.+
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~-----~~~A~~~~~~a~~~~~~ 219 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN-----DAISAQWYRKSATSGDE 219 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-----HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC-----HHHHHHHHHHHHHCCCH
Confidence 666667766 677888888888776665 44555555555544 556 66677766655444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.013 Score=55.20 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=88.9
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+..+=.++...|++.+|++.|..- -|...|..++..|.+.|++++|.+.+....+.. ++....+.+..
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 344566777888889999999998554 467788889999999999999999998766654 44444556999
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+|++.++++....+. + .|+...|..+-..|...|+ .+.|..+|....
T Consensus 1176 aYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~-----YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKM-----YDAAKLLYNNVS 1222 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCC-----HHHHHHHHHhhh
Confidence 999998888644332 1 3456677778888888888 888888888654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00026 Score=47.03 Aligned_cols=88 Identities=10% Similarity=-0.102 Sum_probs=67.0
Q ss_pred hCCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHh
Q 029406 83 RNKKVVEAKQVWEDLKREE--VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160 (194)
Q Consensus 83 ~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~ 160 (194)
..|++++|+..|.+..+.+ -+-+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-.++...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~---- 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGR---- 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC----
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCC----
Confidence 4678899999999988764 23356789999999999999999999999987652 3346788888889999999
Q ss_pred HHHHHhhhcccccccC
Q 029406 161 VKDDFLELFPDMIVYD 176 (194)
Q Consensus 161 ~~~~a~~~~~~m~~~~ 176 (194)
.++|.+.++......
T Consensus 77 -~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 77 -YEQGVELLLKIIAET 91 (117)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhC
Confidence 888888887765443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0073 Score=46.56 Aligned_cols=100 Identities=7% Similarity=-0.042 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...+..+-..+.+.|++++|...|.+..... +-+...|..+-.+|.+.|++++|...++...+. .+-+...|..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 45667777888999999999999999988753 237889999999999999999999999998765 2345678888888
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccC
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
++...|+ .++|...|......+
T Consensus 81 ~~~~~g~-----~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMES-----YDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHcCC-----HHHHHHHHHHHHHhC
Confidence 9999999 888888877654433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0081 Score=42.57 Aligned_cols=131 Identities=10% Similarity=0.015 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA- 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~- 115 (194)
.+...-..+...|++++|...|+...+ .-+-+...+..+-..|.+.|++++|+..|++.... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHH
Confidence 355566678889999999999998752 12235778888999999999999999999987544 3444433322211
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...+....+...|+...+. .+-+...+..+-..+...|+ .++|...++......|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~-~P~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQVGR-----DEEALELLWNILKVNL 139 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTCT
T ss_pred HHhhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccc-----HHHHHHHHHHHHHhCc
Confidence 12223334567888887654 13357888888899999999 8888888888766655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.031 Score=44.52 Aligned_cols=132 Identities=8% Similarity=-0.002 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCCCHHhH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVLFDQHTF 109 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~~~ty 109 (194)
+..+-..|...|++++|.+.|+...+...-.++ ..+++.+=..|...|++++|...|.+.... +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 345566677899999999999887631111122 346777778888999999999999988761 323347789
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHhC----CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 110 GDIIRAFSDSGLPSEAMFIYNEMRSS----PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
..+-..|.+.|++++|...++...+. +-+.....+..+-..+...|+. ...+.|..+++.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~--~~~~~al~~~~~ 328 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE--RKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHh
Confidence 99999999999999999999987553 1222234555565666666662 445666666664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.004 Score=39.97 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+...|..+=..+.+.|++++|...|.+..+.. +.+...|..+-.+|.+.|++++|...|+...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455666667777778888887777776543 235667777777788888888888888776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.017 Score=44.63 Aligned_cols=117 Identities=8% Similarity=-0.082 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM-MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
..+..+-..+.+.|++++|...|+.... ..|+......... .+.+.+..++|...+.+..... +-+...+..+-.
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~ 227 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLAL 227 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHH
Confidence 3455677788899999999999998862 3455543333333 3566777888888888877653 447889999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCC-CCCChhhHHHHHHhhCCCCc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g-~~p~~~ty~~ll~~~~~~g~ 156 (194)
.|...|++++|...|....... -..+...+..+...+...|+
T Consensus 228 ~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 228 QLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 9999999999999999987652 12336788888888888777
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0071 Score=47.10 Aligned_cols=130 Identities=12% Similarity=-0.019 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhh---cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCC-CHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKE---IWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVLF-DQHT 108 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t 108 (194)
+......|...|++++|...|.+...- .+-.+ -..+|+.+-..|.+.|++++|+..|.+.... |-.. -..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445566777889999999999887521 11111 1457888889999999999999999876543 2111 2467
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhC----CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS----PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|+.+-..|.. |++++|...|++..+. |-.+ ...+|..+-..|.+.|+ .+.|.+.++...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al 182 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-----FDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHH
Confidence 8888889988 9999999999986432 2111 14678888889999999 777777776653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.021 Score=37.17 Aligned_cols=79 Identities=6% Similarity=-0.075 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
.|+..|+...+ ..+.+...+..+-..|.+.|++++|...|.+..... +.+...|..+-.+|...|++++|...|+..
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666776652 223357778888888888899999999888887653 235677888888888899999999888876
Q ss_pred Hh
Q 029406 133 RS 134 (194)
Q Consensus 133 ~~ 134 (194)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.016 Score=41.67 Aligned_cols=101 Identities=7% Similarity=-0.067 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCC---C-----------HHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLF---D-----------QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p---~-----------~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
...+..+=..+.+.|++++|...|.+..... -.| . ...|..+-.+|.+.|++++|...++.....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455666677889999999999999988642 122 1 278899999999999999999999998765
Q ss_pred CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 136 PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 136 g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.+.+...|..+-.+|...|+ .+.|.+.|+......|
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~-----~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGF-----LEEAKENLYKAASLNP 153 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHST
T ss_pred -CcccHHHHHHHHHHHHHccc-----HHHHHHHHHHHHHHCC
Confidence 23457788888888999999 8888888887655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.052 Score=38.62 Aligned_cols=93 Identities=14% Similarity=-0.020 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--------H-----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc----
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--------M-----FFYRDMLMMLARNKKVVEAKQVWEDLKRE---- 100 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------~-----~~~~~li~~~~~~g~~~~a~~l~~~m~~~---- 100 (194)
+...=..+.+.|++++|+..|+.-.. +.|+ . ..|+.+=.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34455566788999999999998863 2233 2 38888888899999999999999888764
Q ss_pred -CCCCC-HHhH----HHHHHHHhcCCChHHHHHHHHHhH
Q 029406 101 -EVLFD-QHTF----GDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 101 -g~~p~-~~ty----~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
.+.|+ ...| ...=.++...|++++|...|+...
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 13564 3567 788889999999999999999864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0032 Score=49.93 Aligned_cols=130 Identities=8% Similarity=-0.071 Sum_probs=89.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCC--------------------HHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKK--------------------VVEAKQV 93 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~--------------------~~~a~~l 93 (194)
+..+-..+...|++++|...|+...+...-.++ ..++..+-..|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 334556677789999999988887532111122 4477788888888898 8999888
Q ss_pred HHHHHhc----CCCC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC----CCCC-ChhhHHHHHHhhCCCCchHHhHHH
Q 029406 94 WEDLKRE----EVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS----PATP-ISLPFRVILKGLIPYPEFREKVKD 163 (194)
Q Consensus 94 ~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~ll~~~~~~g~~~~~~~~ 163 (194)
+.+.... +..| ...+|..+-..|...|++++|...|+...+. +..+ ...+|..+...|...|+ .+
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~ 244 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-----FE 244 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-----hH
Confidence 8876542 2111 2457888888999999999999999887532 1111 13477888888888888 77
Q ss_pred HHhhhcccc
Q 029406 164 DFLELFPDM 172 (194)
Q Consensus 164 ~a~~~~~~m 172 (194)
.|...++..
T Consensus 245 ~A~~~~~~a 253 (406)
T 3sf4_A 245 TASEYYKKT 253 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.032 Score=46.87 Aligned_cols=126 Identities=6% Similarity=-0.104 Sum_probs=86.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhh--cCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cC-CCCC-HHh
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKE--IWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EE-VLFD-QHT 108 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~--~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p~-~~t 108 (194)
+..+-.+|++++|..+++...+. .-+.|+ ..+++.|-.+|...|++++|..++.+... .| -.|+ ..+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34566789999999999887531 222232 56889999999999999999999987763 23 2233 467
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHh---CCCCCChh----hHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRS---SPATPISL----PFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~---~g~~p~~~----ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
|+.|-..|...|++++|..++++..+ .-+-||.. +.+.+-.++...|. .+.|..++..+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~-----~~~ae~~~~~~ 461 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM-----FRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 99999999999999999999997632 22334433 33333333433333 66666666555
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.016 Score=39.75 Aligned_cols=114 Identities=5% Similarity=-0.072 Sum_probs=77.2
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc----CCChHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD----SGLPSE 124 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~ 124 (194)
+++++|++.|+.-- +.| .|+.. |=..|...+.+++|...|.+..+.| +...+..|=..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa-~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKAC-ELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHH-HTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHH-cCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 46677888888776 455 33333 4444555567788888888887776 66677777777777 688888
Q ss_pred HHHHHHHhHhCCCCCChhhHHHHHHhhCC----CCchHHhHHHHHhhhcccccccCCch
Q 029406 125 AMFIYNEMRSSPATPISLPFRVILKGLIP----YPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 125 a~~l~~~M~~~g~~p~~~ty~~ll~~~~~----~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
|..+|+.-.+.|. ...+..|-..|.. .++ .++|.++|+.-...|.++
T Consensus 80 A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~~~d-----~~~A~~~~~~Aa~~g~~~ 130 (138)
T 1klx_A 80 AAQYYSKACGLND---QDGCLILGYKQYAGKGVVKN-----EKQAVKTFEKACRLGSED 130 (138)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCC-----HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHCCCCCCcC-----HHHHHHHHHHHHHCCCHH
Confidence 8888888877763 3455555555544 556 788888887766666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.015 Score=50.90 Aligned_cols=133 Identities=10% Similarity=0.043 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKE-IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.++..+....+.|.++.|..+|+..++. ....+......+.|...+ .++++.|..+|+...+. ++-+...|...+..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 3556666666788899999999999843 233444555445554332 35589999999988775 44466677788888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCC--ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATP--ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
....|+.+.|..+|+......-.+ ....|...++--.+.|+ .+.+..+.+.+...-
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~-----~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS-----LNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC-----SHHHHHHHHHHHHHS
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC
Confidence 888899999999999887653212 23577777777777787 555666655554433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.024 Score=34.69 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
.+..+-..+.+.|++++|...|.+..... +.+...+..+-.+|.+.|++++|...|+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555554432 12344555555555555555555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.068 Score=35.83 Aligned_cols=98 Identities=7% Similarity=-0.113 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCC-CCHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVL-FDQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-p~~~ 107 (194)
.+..+-..+...|++++|...|+.......-.++ ...+..+-..+...|++++|...+.+.... +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455667778899999999999987532111122 456777888888999999999999887643 211 1245
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
++..+-..|...|++++|...+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 788888999999999999999987643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.11 Score=40.83 Aligned_cols=128 Identities=6% Similarity=-0.091 Sum_probs=89.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCC--C-CHHh
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM----FFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVL--F-DQHT 108 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~--p-~~~t 108 (194)
.+-..+...|+++.|...++.......-.++. .+++.+-..+...|++++|...+.+.... +.. | ...+
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 34455667899999999999876311112222 33566677788899999999999887643 222 3 2456
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhC--CCCC--ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS--PATP--ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p--~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+..+-..|...|++++|...+++.... ...+ ...+|..+...+...|+ .+.|...++..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~l~~a 200 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-----LDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 777888899999999999999987542 1111 23567777788888888 77777776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0058 Score=53.29 Aligned_cols=121 Identities=11% Similarity=-0.023 Sum_probs=93.2
Q ss_pred HhcCCHhHHHHHHHHHHh-----h-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 46 QRQDQVFLCMKLYDVVRK-----E-IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~-----~-~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
...|++++|++.|+.... . ...+.+...|..+-..|.+.|++++|+..|++..+.. +-+...|..+-.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 568999999999999860 0 1223456778888889999999999999999988753 23678899999999999
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|++++|...|++..+.. +-+...|..+-..+.+.|+ .++ .+.|+....
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~-----~~~-~~~~~~al~ 528 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGN-----TDE-HKFYQTVWS 528 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTC-----CCT-TCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-----hHH-HHHHHHHHH
Confidence 99999999999987652 3356778888888888888 545 555554433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.034 Score=42.29 Aligned_cols=99 Identities=7% Similarity=-0.122 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC-CCHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VL-FDQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~-p~~~ 107 (194)
.+..+-..+...|++++|...|+.......-.++ ..++..+-..|...|++++|...+.+..... -. ....
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4556677788899999999999987532111122 5677888889999999999999998876532 11 1245
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
++..+-..|.+.|++++|...|+...+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7888999999999999999999987653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.049 Score=44.96 Aligned_cols=97 Identities=6% Similarity=-0.154 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhh--cCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cC-CCC
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKE--IWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EE-VLF 104 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p 104 (194)
.+...+..+.+.|++++|..+++...+. .-+.|+ ..+++.|..+|...|++++|+.++.+... .| ..|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 4455677788899999999999988631 112232 45888899999999999999999987763 23 333
Q ss_pred C-HHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 105 D-QHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 105 ~-~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
+ ..+|+.|-..|...|++++|..++++..
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 3579999999999999999999988753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.014 Score=40.57 Aligned_cols=101 Identities=16% Similarity=0.035 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc-------C----------CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKRE-------E----------VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-------g----------~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.+...=..+.+.|++++|+..|.+.... . -+.+...|..+-.+|.+.|++++|...++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4445556778899999999999887764 0 1223468999999999999999999999998765
Q ss_pred CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 136 PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 136 g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
. +-+...|..+-.+|...|+ .+.|...|+......|..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~-----~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWK-----LDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCGGG
T ss_pred C-CcchHHHHHHHHHHHHHhc-----HHHHHHHHHHHHhcCCCC
Confidence 2 4457788888999999999 888888888776666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.017 Score=46.46 Aligned_cols=131 Identities=5% Similarity=-0.054 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH---HHHHHHHHH-HhCCCHHHHHHHHHHHHh----cCCCCC-HH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF---FYRDMLMML-ARNKKVVEAKQVWEDLKR----EEVLFD-QH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~-~~~g~~~~a~~l~~~m~~----~g~~p~-~~ 107 (194)
.+..+...|.+.|++++|.+.+....+-.+..++.. ....++..+ ...|.+++|..++..... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 356788889999999999999998864333333332 233334333 346889999999887663 333333 56
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC--CCC--C-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS--PAT--P-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~--p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++..+...|...|++++|..+++..... +.. | ...+|..+...|...|+ .+.|..+++..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~a 201 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-----LAKSKASLTAA 201 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-----HHHHHHHHHHH
Confidence 7889999999999999999999987542 221 2 24578888899999999 77777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.2 Score=39.35 Aligned_cols=128 Identities=6% Similarity=-0.116 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHH----
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEI---WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFG---- 110 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~---- 110 (194)
.+-..+...|++++|...++...... +......+|..+-..+...|++++|...+.+.....-.++ .....
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 34556778899999999999886311 1111245777888889999999999999998875421111 11111
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCC---hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPI---SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.....+...|+++.|..+++......-.+. ...+..+...+...|+ .+.|.+.++..
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~l~~a 279 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE-----FEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 233457799999999999998765432111 2246677778888898 66666666544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.1 Score=31.69 Aligned_cols=79 Identities=6% Similarity=-0.000 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-..+...|++++|...|+.... . .+.+...+..+-..|.+.|++++|...|.+..+.. +-+...+..+-.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555667889999999999999973 2 23367788889999999999999999999987753 22455565555554
Q ss_pred hc
Q 029406 117 SD 118 (194)
Q Consensus 117 ~~ 118 (194)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.062 Score=34.23 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
...+..+=..|.+.|++++|+..|++..+.. +-+...|..+-.+|.+.|++++|...|+..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555666666666665555442 113345555555666666666666655554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.043 Score=45.39 Aligned_cols=101 Identities=7% Similarity=0.003 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-CC-------------HHhHHHHHHHHhcCCChHHHHHHHHHhHhCC
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL-FD-------------QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~-------------~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g 136 (194)
...|..+=..|.+.|++++|...|.+..+..-. ++ ...|..+-.+|.+.|++++|...|+...+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 446677778888999999999999988864311 11 5889999999999999999999999987652
Q ss_pred CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 137 ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 137 ~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+-+...|..+-.+|...|+ .+.|...|+......|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~-----~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNE-----FESAKGDFEKVLEVNP 382 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTC-
T ss_pred -CccHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHhCC
Confidence 3457888888899999999 8888888887655544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.047 Score=34.69 Aligned_cols=84 Identities=13% Similarity=-0.030 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-------HHhHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD-------QHTFG 110 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-------~~ty~ 110 (194)
+..+-..+...|++++|...|+...+ . .+.+...|..+=.+|.+.|++++|+..|.+..+. .|+ ...+.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLIT-A-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHH
Confidence 44555677789999999999999973 2 2336788888889999999999999999998765 344 33444
Q ss_pred HHHHHHhcCCChHHH
Q 029406 111 DIIRAFSDSGLPSEA 125 (194)
Q Consensus 111 ~li~~~~~~g~~~~a 125 (194)
.+-.++...|.++.+
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 444444444444433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.044 Score=47.95 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhc--------CCCCC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEI--------WYRPD------------MFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~--------~~~p~------------~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
...+...-+.|+++.|.++|+...+.. .-.|+ ...|...++...+.|..+.|..+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666677899999999999997321 00142 3478899999999999999999999998
Q ss_pred hc-C-CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 99 RE-E-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 99 ~~-g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
+. + ..+......+.+.-.+ .++.+.|..+|+...+. ++-+...|...++-....|+ .+.|..+|+......
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~-----~~~AR~lferal~~~ 534 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE-----ESQVKSLFESSIDKI 534 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHTTTS
T ss_pred HhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhc
Confidence 76 3 3344444444444322 35699999999998765 33345556677776777788 899999999876666
Q ss_pred C
Q 029406 177 P 177 (194)
Q Consensus 177 ~ 177 (194)
+
T Consensus 535 ~ 535 (679)
T 4e6h_A 535 S 535 (679)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.038 Score=43.76 Aligned_cols=98 Identities=16% Similarity=-0.025 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH------------------hHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH------------------TFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~------------------ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
..+..+=..+.+.|++++|...|.+.... .|+.. .|..+-.+|.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666777899999999999987654 34432 78899999999999999999999987
Q ss_pred hCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 134 ~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+.. +-+...|..+-.+|...|+ .+.|...|+......|
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~-----~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQ-----MDSARDDFRKAQKYAP 295 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTC-----HHHHHHHHHHTTC---
T ss_pred HhC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHCC
Confidence 642 3457888899999999999 8888888887655443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.042 Score=44.26 Aligned_cols=99 Identities=10% Similarity=-0.096 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc---------------CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKRE---------------EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~---------------g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~ 137 (194)
.|..+=..|.+.|++++|+..|.+..+. --+-+..+|..+-.+|.+.|++++|...++...+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3556667888999999999999988761 112255789999999999999999999999987652
Q ss_pred CCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 138 TPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 138 ~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+-+...|..+-.+|...|+ .++|.+.|+......|
T Consensus 304 p~~~~a~~~lg~~~~~~g~-----~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKE-----YDQALADLKKAQEIAP 338 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred chhHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHhCC
Confidence 3357788888899999999 8888888887665554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.1 Score=43.11 Aligned_cols=86 Identities=2% Similarity=-0.043 Sum_probs=66.7
Q ss_pred cCCHhHHHHHHHHHHh--hcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cC-CCCCH-HhHHHHHH
Q 029406 48 QDQVFLCMKLYDVVRK--EIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EE-VLFDQ-HTFGDIIR 114 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~--~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p~~-~ty~~li~ 114 (194)
.|++++|..+++...+ ..-+.|+ ..+++.|-.+|...|++++|..++.+... .| -.|++ .+|+.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 5789999999988752 1223333 46889999999999999999999987763 23 33433 57999999
Q ss_pred HHhcCCChHHHHHHHHHhH
Q 029406 115 AFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~ 133 (194)
.|...|++++|..+|++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 9999999999999998753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.21 Score=40.45 Aligned_cols=51 Identities=10% Similarity=-0.094 Sum_probs=29.2
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
.++++.|.+.++.... ..+.+...+..+-..|.+.|++++|...|.+..+.
T Consensus 226 ~~~~~~a~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp ----CHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 3566667777766642 12234556666667777777777777776666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.037 Score=46.15 Aligned_cols=90 Identities=7% Similarity=-0.068 Sum_probs=74.0
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHH
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~ 159 (194)
.+.+.|++++|...|.+..+.. +-+..+|..+-.+|.+.|++++|...+++..+.. +-+..+|..+-..|...|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~--- 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK--- 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---
Confidence 4557899999999999988763 3368899999999999999999999999987762 3457788888899999999
Q ss_pred hHHHHHhhhcccccccC
Q 029406 160 KVKDDFLELFPDMIVYD 176 (194)
Q Consensus 160 ~~~~~a~~~~~~m~~~~ 176 (194)
.++|.+.++......
T Consensus 90 --~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 90 --FRAALRDYETVVKVK 104 (477)
T ss_dssp --HHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHhC
Confidence 888888887765443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.1 Score=33.22 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~ 114 (194)
..+..+-..+.+.|++++|+..|+...+ .. +-+...|..+=.+|.+.|++++|...|.+..+.. -.++......+-.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~ 85 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVE-TD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence 3455666778889999999999999973 22 2246688889999999999999999999876542 2234444433333
Q ss_pred H
Q 029406 115 A 115 (194)
Q Consensus 115 ~ 115 (194)
.
T Consensus 86 ~ 86 (100)
T 3ma5_A 86 A 86 (100)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.1 Score=42.37 Aligned_cols=119 Identities=8% Similarity=-0.152 Sum_probs=66.2
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH--hHHHHHH-HHhcCCChHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH--TFGDIIR-AFSDSGLPSEAM 126 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--ty~~li~-~~~~~g~~~~a~ 126 (194)
.++.|...|+...+. -+.+...+..+=..|.+.|++++|...|.+.......|... .+..+-. .+...|+.++|.
T Consensus 315 ~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 315 LIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 356677777766521 12234556677778888888888888888877654333221 1222221 234668888888
Q ss_pred HHHHHhHhCC-----------------------CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 127 FIYNEMRSSP-----------------------ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 127 ~l~~~M~~~g-----------------------~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
..|.+..+-. -+.+..+|..+-..|...|+ .++|.+.|+.....
T Consensus 393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~-----~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK-----MQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH-----CC------------
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhc
Confidence 8777654321 13456788888888887788 78888888766543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.15 Score=36.19 Aligned_cols=97 Identities=8% Similarity=-0.103 Sum_probs=71.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCC-C-----CH-----HhHHHHHHHHhcCCChHHHHHHHHHhHhC-----CCC
Q 029406 75 RDMLMMLARNKKVVEAKQVWEDLKREEVL-F-----DQ-----HTFGDIIRAFSDSGLPSEAMFIYNEMRSS-----PAT 138 (194)
Q Consensus 75 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p-----~~-----~ty~~li~~~~~~g~~~~a~~l~~~M~~~-----g~~ 138 (194)
...=..+.+.|++++|+..|++..+..=. | +. ..|+.+-.++.+.|++++|...++...+- .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33445567889999999999988865311 1 23 38999999999999999999999987653 225
Q ss_pred CC-hhhH----HHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 139 PI-SLPF----RVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 139 p~-~~ty----~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
|+ ...| ...-.++...|+ .++|...|+......
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr-----~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGR-----GAEAMPEFKKVVEMI 132 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCC-----HHHHHHHHHHHHhcC
Confidence 65 4566 666777888899 888888887665443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=94.69 E-value=1.5 Score=35.91 Aligned_cols=127 Identities=9% Similarity=0.014 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcC---CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCCCHHhH
Q 029406 37 DLVSVLAEFQRQD---QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN----KKVVEAKQVWEDLKREEVLFDQHTF 109 (194)
Q Consensus 37 ~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~ty 109 (194)
.+..+-..|.+.| ++.+|+..|+.-. ..| .++...+..|=..|... +++++|...|.+.. .| +...+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGV-SRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHH
Confidence 3444555555667 7777777777775 333 33444444444455443 57788888887776 44 33344
Q ss_pred HHHHHH-H--hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 110 GDIIRA-F--SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 110 ~~li~~-~--~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
..+-.. | ...+++++|..+|+...+.| +...+..|-..|. .|...++..++|.++|+...
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 444444 2 34678888888888777666 3344444444443 23000111666777666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.23 Score=38.59 Aligned_cols=104 Identities=8% Similarity=-0.114 Sum_probs=75.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhc
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAFSD 118 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~ 118 (194)
..+.+.++|++|+..|+... ... .|. ...+..+=.++.+.|++++|+..|++.......|. .......-.++.+
T Consensus 143 ~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 143 VVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 36778999999999998553 111 121 22455666678889999999999999875444354 3356677778889
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
.|+.++|..+|+++... .|+...+.+|.+-
T Consensus 221 lGr~deA~~~l~~a~a~--~P~~~~~~aL~~~ 250 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTT--HPEPKVAAALKDP 250 (282)
T ss_dssp HTCHHHHHHHHHHHHHH--SCCHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHhc--CCcHHHHHHHhCC
Confidence 99999999999999876 4555555555433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.92 Score=37.16 Aligned_cols=130 Identities=8% Similarity=0.074 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRK-EIWYRPDMFFYRDMLMMLARNK---KVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
+..+-..|...+.++.+..-...+.+ .....|+ .+..|=..|...| +.++|+..|.+..+.| .++...+..|-
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 33444445555544444433333321 1122334 6777777888899 8999999999998887 34666656677
Q ss_pred HHHhcC----CChHHHHHHHHHhHhCCCCCChhhHHHHHHh-h--CCCCchHHhHHHHHhhhcccccccCCch
Q 029406 114 RAFSDS----GLPSEAMFIYNEMRSSPATPISLPFRVILKG-L--IPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 114 ~~~~~~----g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~-~--~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
..|... +++++|..+|+... .| +...+..|-.. + ...|+ .++|.++|+.....|.++
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d-----~~~A~~~~~~Aa~~g~~~ 284 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGD-----VEQMMKYLDNGRAADQPR 284 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCC-----HHHHHHHHHHHHHTTCHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHCCCHH
Confidence 777665 79999999999987 44 33444444443 2 34667 888888888766555444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.15 Score=32.93 Aligned_cols=79 Identities=6% Similarity=-0.023 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhh
Q 029406 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL 168 (194)
Q Consensus 89 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~ 168 (194)
+|+..|.+..+.. +-+...|..+-..|...|++++|...|+...... +.+...|..+-..|...|+ .+.|...
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~ 75 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGD-----RAGARQA 75 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCC-----HHHHHHH
Confidence 4566777666543 3367889999999999999999999999987652 3456788888889999999 8888888
Q ss_pred cccccc
Q 029406 169 FPDMIV 174 (194)
Q Consensus 169 ~~~m~~ 174 (194)
|+....
T Consensus 76 ~~~al~ 81 (115)
T 2kat_A 76 WESGLA 81 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.47 Score=29.36 Aligned_cols=55 Identities=9% Similarity=-0.072 Sum_probs=29.4
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRPDMF-FYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
.+.+.|++++|...|+...+ . .+.+.. .|..+=.+|...|++++|...|.+..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQ-T-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHH-H-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455666666666666542 1 112334 4555555555566666666666655544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.16 Score=31.67 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=47.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCCHH-hHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 78 LMMLARNKKVVEAKQVWEDLKREEVLFDQH-TFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 78 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
-..+.+.|++++|...|.+..+.. +-+.. .|..+-.+|...|++++|...|+...+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345678899999999999988763 23566 8889999999999999999999998765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.31 Score=40.88 Aligned_cols=98 Identities=5% Similarity=-0.120 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh----hcC-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cC-CCCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRK----EIW-YRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EE-VLFD 105 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~-~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p~ 105 (194)
+..+...|...|++++|..+++.... ..| ..|+ ..+++.|=..|...|++++|..++.+... .| -.|+
T Consensus 354 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~ 433 (490)
T 3n71_A 354 LSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI 433 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 45677788889999999999988742 122 1233 55788899999999999999999987663 23 2233
Q ss_pred -HHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 106 -QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 106 -~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
..+.+.+-.++...+.+..|..+|..+++.
T Consensus 434 ~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 434 TKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888889999999999998753
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.55 Score=30.09 Aligned_cols=67 Identities=6% Similarity=-0.036 Sum_probs=40.4
Q ss_pred hchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 33 LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-----WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
++..++..+=..+...+++..|..-|+.-.+.. .-.+....+..+-.+|.+.|++++|..++++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345666777777777777777777776654221 1123345556666666666666666666665554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.66 E-value=0.91 Score=29.64 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
+.=++.+-++.+-...+.|+.....+.+.+|-|.+++..|.++|+..+.+ +.+....|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 44445555555555666666666666667766666676666666666544 22333446555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.25 Score=40.77 Aligned_cols=84 Identities=8% Similarity=-0.108 Sum_probs=62.9
Q ss_pred hCCCHHHHHHHHHHHHhc---CCCCC----HHhHHHHHHHHhcCCChHHHHHHHHHhHh---C--CCC-CC-hhhHHHHH
Q 029406 83 RNKKVVEAKQVWEDLKRE---EVLFD----QHTFGDIIRAFSDSGLPSEAMFIYNEMRS---S--PAT-PI-SLPFRVIL 148 (194)
Q Consensus 83 ~~g~~~~a~~l~~~m~~~---g~~p~----~~ty~~li~~~~~~g~~~~a~~l~~~M~~---~--g~~-p~-~~ty~~ll 148 (194)
..|++++|+.++.+..+. -+-|+ ..+++.|..+|...|++++|..++++..+ + |-. |+ ..+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999877642 23333 36899999999999999999999998743 2 321 33 47899999
Q ss_pred HhhCCCCchHHhHHHHHhhhccc
Q 029406 149 KGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
..|...|+ .++|..+++.
T Consensus 390 ~~~~~qg~-----~~eA~~~~~~ 407 (433)
T 3qww_A 390 RLYMGLEN-----KAAGEKALKK 407 (433)
T ss_dssp HHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHhccC-----HHHHHHHHHH
Confidence 99999998 6666665554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.28 Score=40.33 Aligned_cols=90 Identities=11% Similarity=-0.015 Sum_probs=66.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC---CCCC----HHhHHHHHHHHhcCCChHHHHHHHHHhHh---CCCC---CC-hh
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREE---VLFD----QHTFGDIIRAFSDSGLPSEAMFIYNEMRS---SPAT---PI-SL 142 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g---~~p~----~~ty~~li~~~~~~g~~~~a~~l~~~M~~---~g~~---p~-~~ 142 (194)
.+.-+.+.|++++|+.++.+..... +.|+ ..+++.|...|...|++++|..++++... .-+. |+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667899999999999887532 3332 46899999999999999999999997643 2122 33 47
Q ss_pred hHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 143 PFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 143 ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+|+.|-..|...|+ .++|..++++
T Consensus 373 ~l~nLa~~~~~~g~-----~~eA~~~~~~ 396 (429)
T 3qwp_A 373 QVMKVGKLQLHQGM-----FPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----HHHHHHHHHH
Confidence 88999999999998 5555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.85 Score=36.89 Aligned_cols=67 Identities=3% Similarity=-0.095 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCCCHHh
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EEVLFDQHT 108 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~t 108 (194)
.++..+...|++.++......... --+.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345555566666666666666542 2334566666667777677776666666665542 366666553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.63 Score=36.49 Aligned_cols=104 Identities=2% Similarity=-0.059 Sum_probs=58.2
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC-----
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVV--EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL----- 121 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~----- 121 (194)
+++.+++.+++.+.+ .-+-|-..|+.---.+.+.|.++ +++++++++.+.... |...|+---..+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 566677777777652 22335666666666666666665 666666666665544 56666655555555554
Q ss_pred -hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 122 -PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 122 -~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
++++++.++.+.... +-|...|+.+-..+.+.|.
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 566666666555431 2244444444444433333
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=92.70 E-value=0.96 Score=37.74 Aligned_cols=120 Identities=9% Similarity=0.016 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYR--DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
+...+....+.+.++.|..+|+..+ ..+. +...|. +.|...+. ++.+.|..+|+...+.- +-+...+...+.-
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A~-~~~~--~~~v~i~~A~lE~~~~-~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIELG-NEGV--GPHVFIYCAFIEYYAT-GSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHT-TSCC--CHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh-CCCC--ChHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4455666666788999999999883 3332 334443 44554442 36999999999887642 2234456777777
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
..+.|+.+.|..+|+.... ....|...+.--...|+ .+.+..+++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~-----~~~~r~v~~~~ 410 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGS-----MELFRELVDQK 410 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSC-----HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 7888999999999999732 35667777766566677 66665555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=1.2 Score=36.08 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh-----CCCCCChhh---HHHH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS-----SPATPISLP---FRVI 147 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t---y~~l 147 (194)
.++..+...|++.+|......+... -+.+...|-.+|.+|.+.|+..+|...|+.... -|+.|...+ |..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~i 254 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 254 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4667777899999999988888654 356889999999999999999999999998643 499998754 4444
Q ss_pred HH
Q 029406 148 LK 149 (194)
Q Consensus 148 l~ 149 (194)
+.
T Consensus 255 l~ 256 (388)
T 2ff4_A 255 LR 256 (388)
T ss_dssp HT
T ss_pred Hc
Confidence 43
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.82 E-value=2.2 Score=29.40 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
+.=+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+..+.+ +.+....|..+++-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 44455556666667778888888888888888888888888888887665 344455677666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=5.7 Score=33.72 Aligned_cols=120 Identities=10% Similarity=0.021 Sum_probs=86.6
Q ss_pred HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC-ChHHHHH
Q 029406 51 VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK--KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG-LPSEAMF 127 (194)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~ 127 (194)
+++++++++.+.+ ..+-+...|+.--.++.+.+ ++++++.+++++.+.... |...|+---..+.+.| .++++.+
T Consensus 89 ~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHH
Confidence 8999999999973 22336778888888888888 779999999999988655 8889999888888999 8999999
Q ss_pred HHHHhHhCCCCCChhhHHHHHHhhCCC---------CchHHhHHHHHhhhcccccc
Q 029406 128 IYNEMRSSPATPISLPFRVILKGLIPY---------PEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 128 l~~~M~~~g~~p~~~ty~~ll~~~~~~---------g~~~~~~~~~a~~~~~~m~~ 174 (194)
.+..+.+.. +-|...|+..-..+.+. |...+...+++.+.+.....
T Consensus 166 ~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 999987763 33556666554443321 10112335666666655443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.55 E-value=0.62 Score=32.93 Aligned_cols=102 Identities=13% Similarity=-0.044 Sum_probs=71.0
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKK----------VVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
.+.+.+++|.+.++.-.. ..| +...|+.+=.++...++ +++|+..|++..+.. +-+...|..+=.
T Consensus 13 ~r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 355667888888888763 223 45566655556665554 468888888887663 225678888888
Q ss_pred HHhcCC-----------ChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 115 AFSDSG-----------LPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 115 ~~~~~g-----------~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
+|...| ++++|...|++..+- .|+...|..-+...-+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 888764 899999999987654 6777777766665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=91.36 E-value=1.1 Score=39.00 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m 97 (194)
.+...|..+=..+.+.++++.|...|.++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 35667777777777777777777777765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.14 E-value=2.8 Score=29.30 Aligned_cols=18 Identities=22% Similarity=0.078 Sum_probs=8.7
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 029406 82 ARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 82 ~~~g~~~~a~~l~~~m~~ 99 (194)
.+.|++++|.+.++.+.+
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHTSCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHh
Confidence 444555555555444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=90.70 E-value=3.1 Score=36.05 Aligned_cols=81 Identities=7% Similarity=0.015 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+.+.++++.|.+.|..+.. |..+...|...|+.+....+-+.....| -|+....+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~ 745 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNA 745 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHH
Confidence 4456777888889999999999998862 4567777777888777766666555554 35666667
Q ss_pred HhcCCChHHHHHHHHHh
Q 029406 116 FSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M 132 (194)
|.+.|++++|.+++.++
T Consensus 746 ~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 746 YWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHc
Confidence 77778888888877765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.27 E-value=2.4 Score=26.95 Aligned_cols=71 Identities=8% Similarity=-0.016 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCCh
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE------VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 141 (194)
.+...+..|=..+.+.|++..|..-|....+.- -.+....|..+-.+|.+.|+++.|...++..... .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 455666777788889999999998888766531 1346778999999999999999999999988653 4543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=90.07 E-value=3.4 Score=33.34 Aligned_cols=85 Identities=14% Similarity=0.041 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHH
Q 029406 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146 (194)
Q Consensus 67 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 146 (194)
.+.+..+|..+-..+.-.|++++|...+++....+ |+...|..+=..+.-.|+.++|.+.|.....- .|...||..
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 35567777776666666688999988888888775 78777777777888888998888888765443 566677776
Q ss_pred HHHhhCCCC
Q 029406 147 ILKGLIPYP 155 (194)
Q Consensus 147 ll~~~~~~g 155 (194)
.=+..+...
T Consensus 349 ~~~l~F~sn 357 (372)
T 3ly7_A 349 IENGIFQTS 357 (372)
T ss_dssp HHHSSSCCC
T ss_pred HhCceeecc
Confidence 555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.37 E-value=6.7 Score=30.92 Aligned_cols=118 Identities=7% Similarity=-0.172 Sum_probs=84.3
Q ss_pred cCCHhHHHHHHHHHHh---hcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCC-CHHhHHHHHHHHhc
Q 029406 48 QDQVFLCMKLYDVVRK---EIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLF-DQHTFGDIIRAFSD 118 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~---~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p-~~~ty~~li~~~~~ 118 (194)
.|+++.|.+++..... ..+..+. ..++..+-..|...|++++|..++.+....- -.| ...+|..+...|..
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 5889999999887742 2333333 5678889999999999999999999876432 112 24579999999999
Q ss_pred CCChHHHHHHHHHhHhC----CCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 119 SGLPSEAMFIYNEMRSS----PATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~----g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
.|++++|..+++..... +.+|. ...|..+...+...|+ .+.|...|.
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----y~~A~~~~~ 240 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD-----YKTAFSYFF 240 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC-----HHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh-----HHHHHHHHH
Confidence 99999999999886432 22222 3566666677788888 555544443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.34 E-value=3.2 Score=27.10 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=48.6
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+.-+..+-++.+. ...+.|+.....+.+++|-|.+++.-|.++|+..+... .+...+|..++.
T Consensus 25 D~~e~rrglN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3445566666666 78899999999999999999999999999999887653 223445766654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.36 E-value=4.1 Score=28.67 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=75.1
Q ss_pred hhhchhhHHHHHHHHHhcCCH------hHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh------CCCHHHHHHHHHHH
Q 029406 31 SRLLKSDLVSVLAEFQRQDQV------FLCMKLYDVVRKEIWYRPDM-FFYRDMLMMLAR------NKKVVEAKQVWEDL 97 (194)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~------~g~~~~a~~l~~~m 97 (194)
++-.+..+...|...-+.|++ +...++|+.-. ..++|+. ..|..-|..+.+ .++.++|.++|+.+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi--a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI--EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH--HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH--HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334456677777777777888 77888888775 4566642 222333332222 36888899999988
Q ss_pred HhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhh
Q 029406 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLP 143 (194)
Q Consensus 98 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 143 (194)
...+-.. ...|...-.-=.+.|++..|..++..-...+..|....
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 7655445 77888888888889999999999999887665554433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=86.88 E-value=9.4 Score=29.68 Aligned_cols=127 Identities=9% Similarity=0.017 Sum_probs=96.9
Q ss_pred HHhcCCHh--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 45 FQRQDQVF--LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK------VVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 45 ~~~~~~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
+.+.+.++ +++++++.+.+ . -+-|-..|+.--.++.+.+. ++++++.+.++...... |...|+-+-..+
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~-~-d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll 230 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVID-T-DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIH 230 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHH
Confidence 34567777 99999999973 2 33578888877777777776 89999999999887654 899999999999
Q ss_pred hcCCChHH-HHHHHHHhHhCC--CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc-cCCch
Q 029406 117 SDSGLPSE-AMFIYNEMRSSP--ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV-YDPPE 179 (194)
Q Consensus 117 ~~~g~~~~-a~~l~~~M~~~g--~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~-~~~~~ 179 (194)
.+.|+... +..+.....+.+ -+.+...+..+...|.+.|+ .++|.++++.+.. ++|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~-----~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 231 ERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK-----YNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTTCGGG
T ss_pred HhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHhccChHH
Confidence 99988544 555666665432 23467888899999999999 8889999888764 66543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.24 E-value=6.4 Score=28.23 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+=+...++|+++.|...|...++ |..+.-.|.-.|+.+....+-..-...| -||....++.
T Consensus 37 Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l 100 (177)
T 3mkq_B 37 WERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTF 100 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHH
Confidence 44455555555555555555555541 3444444445555554444433333333 2666677777
Q ss_pred cCCChHHHHHHHHH
Q 029406 118 DSGLPSEAMFIYNE 131 (194)
Q Consensus 118 ~~g~~~~a~~l~~~ 131 (194)
-.|+++++.++|.+
T Consensus 101 ~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 101 YNNSTKERSSIFAE 114 (177)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 77777777777754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=85.78 E-value=14 Score=30.61 Aligned_cols=25 Identities=8% Similarity=-0.241 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
+...+.-+.+.|+++.|..+|+...
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445556667899999999998876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.49 E-value=4.9 Score=25.13 Aligned_cols=48 Identities=17% Similarity=0.018 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 87 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.++|..++.+..... +-+......+-..+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566666666665543 224455555566666667777777777766554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=85.30 E-value=13 Score=29.89 Aligned_cols=123 Identities=7% Similarity=-0.017 Sum_probs=79.4
Q ss_pred CCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHH----hCC-CHHHHHHHHHHHHh----cCCCCCHHhHHHHHHHHhc
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLA----RNK-KVVEAKQVWEDLKR----EEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~----~~g-~~~~a~~l~~~m~~----~g~~p~~~ty~~li~~~~~ 118 (194)
.....|..+|++..+ ..|+ ...|..+--+|. ..+ .......+-..+.. ...+.+..+|.++-..+..
T Consensus 213 ~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 213 KSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence 345789999999874 4465 333333222222 111 11222222112211 2346688888888777777
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhh
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~ 181 (194)
.|+++.|...++.....+ |+...|..+-..+.-.|+ .++|.+.+......+|.+..
T Consensus 290 ~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~-----~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGM-----NREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHSCSHHH
T ss_pred CCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhcCCCcCh
Confidence 899999999999998775 787777777777888899 88888888876666665543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=84.50 E-value=7 Score=26.02 Aligned_cols=89 Identities=10% Similarity=-0.116 Sum_probs=71.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..|...+.++.|.+.|+.-- +.| +...++.|=..|.. .+++++|...|.+..+.| +...+..|-..|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa-~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKAC-ELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYA 105 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHH-cCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHC
Confidence 33445677888999999887 343 56666666667777 789999999999999887 67788888888888
Q ss_pred ----CCChHHHHHHHHHhHhCCCC
Q 029406 119 ----SGLPSEAMFIYNEMRSSPAT 138 (194)
Q Consensus 119 ----~g~~~~a~~l~~~M~~~g~~ 138 (194)
.++.++|..+|+.-.+.|..
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH
Confidence 89999999999998887743
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=83.63 E-value=8.9 Score=26.68 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=73.2
Q ss_pred HHHHHHHh------cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 40 SVLAEFQR------QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 40 ~ll~~~~~------~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
..|+.-++ +|.+.....-|-.+- .+...++..++.....|.-++..++...+.. +.+|+....-.+-
T Consensus 60 ~vLd~IGkiFDis~C~NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia 132 (172)
T 1wy6_A 60 QVLDKIGSYFDLDKCQNLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIA 132 (172)
T ss_dssp HHHHHHGGGSCGGGCSCTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHH
T ss_pred HHHHHHhhhcCcHhhhcHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 45555543 566666666665554 5777889999999999999999999998643 4578888899999
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPAT 138 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~ 138 (194)
++|.+.|+..++.+++.+.=++|++
T Consensus 133 ~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 133 NALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcchhhHHHHHHHHHHhhhH
Confidence 9999999999999999999888875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=83.39 E-value=14 Score=28.77 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC-CCh
Q 029406 52 FLCMKLYDVVRKEIWYRPD---MFFYRDMLMMLAR-----NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS-GLP 122 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~ 122 (194)
..|...++... .+.|+ ...|+.+-..|.+ .|+.++|.+.|++..+-+=.-+..++...-..++.. |+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 44455555554 36676 6689999999999 499999999999988763211367777888888885 999
Q ss_pred HHHHHHHHHhHhCCCC--CChhhHHHH
Q 029406 123 SEAMFIYNEMRSSPAT--PISLPFRVI 147 (194)
Q Consensus 123 ~~a~~l~~~M~~~g~~--p~~~ty~~l 147 (194)
+.+...++......-. |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999998887554 665544443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.05 E-value=9.2 Score=26.34 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=48.1
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
|.-+..+-++.+. ...+.|+.....+.+++|-|.+++.-|.++|+..+... .+...+|.-++.
T Consensus 68 D~wElrrglN~l~-~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3334555555666 67899999999999999999999999999999887653 333556766654
|
| >3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A | Back alignment and structure |
|---|
Probab=82.52 E-value=6.6 Score=29.15 Aligned_cols=52 Identities=8% Similarity=-0.041 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 029406 4 ESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 4 ~a~~vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
+|+.+|..+++....++.+...++.... ...+-.|.++|.+++|.++++..-
T Consensus 90 SAl~v~~~I~~e~~l~~~l~e~i~~llk-------~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 90 SAINVLEMIKTEFTLTEAVVESSRKLVK-------EAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH-------HHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHH-------HHHHHHHHHhcchHHHHHHHHHHh
Confidence 4566666666665555554444443322 244556778888888888888885
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=82.38 E-value=22 Score=30.12 Aligned_cols=120 Identities=9% Similarity=-0.048 Sum_probs=82.6
Q ss_pred hcCC-HhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCC----------HHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 47 RQDQ-VFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKK----------VVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 47 ~~~~-~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+.|. -++|++.++.+.. +.|+ ...|+.-=..+.+.|. +++++.+++.+.+..-+ +..+|+.--.
T Consensus 40 ~~~~~~eeal~~~~~~l~---~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4444 4678999999973 4454 4556554444444455 89999999999876533 7888998888
Q ss_pred HHhcCC--ChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC-chHHhHHHHHhhhcccccccC
Q 029406 115 AFSDSG--LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP-EFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 115 ~~~~~g--~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g-~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.+.+.+ +++++..+++.+.+.. +-+...|+.--..+.+.| . .+++.+.+..+....
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~-----~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVA-----PAEELAFTDSLITRN 174 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCC-----HHHHHHHHHTTTTTT
T ss_pred HHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHC
Confidence 888999 6799999999998763 335566665555555556 4 566666666554433
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.16 E-value=8.3 Score=25.14 Aligned_cols=85 Identities=14% Similarity=-0.013 Sum_probs=59.0
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM--MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
...-++|..+-+++. ..+ + .-...||+ .+...|++++|+.+.+.+ .-||...|-+|-.+ |.|..+++
T Consensus 20 ~H~HqEA~tIAdwL~-~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~l 88 (116)
T 2p58_C 20 NHYHEEANCIAEWLH-LKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSAL 88 (116)
T ss_dssp TTCHHHHHHHHHHHH-HTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHH
T ss_pred chHHHHHHHHHHHHH-hCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHH
Confidence 456688888888887 333 3 33334444 455679999998877643 47898888888766 78888888
Q ss_pred HHHHHHhHhCCCCCChhhH
Q 029406 126 MFIYNEMRSSPATPISLPF 144 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty 144 (194)
...+..+..+| .|....|
T Consensus 89 e~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 89 ESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHH
Confidence 88888887776 3433333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=82.15 E-value=17 Score=28.67 Aligned_cols=94 Identities=4% Similarity=-0.093 Sum_probs=66.8
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC---------
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK-VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS--------- 119 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~--------- 119 (194)
.++.++.+++.+.+ --+-|-..|+.---++...|. ++++++.+.++.+.... |...|+-.-..+.+.
T Consensus 125 ~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 125 NWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-----
T ss_pred cHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccc
Confidence 48889999999973 234577888877777777887 68999999988887644 777787776666554
Q ss_pred -----CChHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 120 -----GLPSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 120 -----g~~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
+.++++++++....... +-|...|+-+
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45678888888776542 3355666533
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.51 E-value=7.4 Score=36.00 Aligned_cols=109 Identities=7% Similarity=0.044 Sum_probs=79.9
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCC-----------------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRP-----------------------DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p-----------------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
++...|++++|.+.|..- ..|+.. -..-|..++..+-+.+.++.+.++-....+.
T Consensus 851 ~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 851 IYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH--hhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345689999999999765 222211 1245788999999999999999887765543
Q ss_pred CC-C-CC--HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 101 EV-L-FD--QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 101 g~-~-p~--~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.- . ++ ...|..++.++...|++++|+..+-.+...... .....-|+..+|..|.
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCC
T ss_pred ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCC
Confidence 21 1 22 236899999999999999999999888766433 4667778888887776
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=81.21 E-value=10 Score=25.54 Aligned_cols=66 Identities=8% Similarity=-0.113 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHhcCCCC--CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 69 PDMFFYRDMLMMLARNKKVVE---AKQVWEDLKREEVLF--DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~---a~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
|+..+-..+=.+++++....+ ++.++....+.+ .| .....=.|--++.+.|++++|...++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444444445555554444 566666655543 12 1222223334556666666666666665443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.08 E-value=7.7 Score=25.25 Aligned_cols=85 Identities=12% Similarity=-0.030 Sum_probs=59.0
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM--MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
...-++|..+-+++. ..+ + .-...||+ .+...|++++|+.+.+.+ .-||...|-+|-.+ |.|..+++
T Consensus 19 ~H~HqEA~tIAdwL~-~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~l 87 (115)
T 2uwj_G 19 QHCHEEALCIAEWLE-RLG---Q-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAAL 87 (115)
T ss_dssp TTCHHHHHHHHHHHH-HTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHH
T ss_pred chHHHHHHHHHHHHH-hCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHH
Confidence 456688888888887 333 3 33334444 455679999998776533 47898888888665 88999998
Q ss_pred HHHHHHhHhCCCCCChhhH
Q 029406 126 MFIYNEMRSSPATPISLPF 144 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty 144 (194)
...+..+..+| .|....|
T Consensus 88 e~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 88 DRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHH
Confidence 88888887776 3333333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.69 E-value=0.88 Score=32.13 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=68.1
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCCh----------HHHHHHHHHhHhCCCCC-ChhhHHHHHHh
Q 029406 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP----------SEAMFIYNEMRSSPATP-ISLPFRVILKG 150 (194)
Q Consensus 82 ~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~----------~~a~~l~~~M~~~g~~p-~~~ty~~ll~~ 150 (194)
.+.+.+++|...++...+.. +-+...|+.+=.++...+++ ++|...|++..+- .| +..+|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 35567899999999887664 33777788777788877664 5999999987654 34 45678888888
Q ss_pred hCCCCch------HHhHHHHHhhhcccccccCCchhhh
Q 029406 151 LIPYPEF------REKVKDDFLELFPDMIVYDPPEDLF 182 (194)
Q Consensus 151 ~~~~g~~------~~~~~~~a~~~~~~m~~~~~~~~~~ 182 (194)
|.+.|.+ .....++|.+.|+......|....+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 8765410 0012888888888877766655444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.44 E-value=4.8 Score=28.09 Aligned_cols=88 Identities=9% Similarity=-0.019 Sum_probs=61.9
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHhcCCChH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK---KVVEAKQVWEDLKREEVLF--DQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~ 123 (194)
..+..+.+-|..-. ..+. ++..+...+=.++++++ ++++++.+|....+.+ .| +...+=.+--+|.+.|+++
T Consensus 12 ~~l~~~~~~y~~e~-~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHH-HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHH-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 34556666676665 3333 67777777777888888 6779999999998875 34 2334444455669999999
Q ss_pred HHHHHHHHhHhCCCCCCh
Q 029406 124 EAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~ 141 (194)
+|.+.++...+. .|+-
T Consensus 89 ~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 89 KALKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHhc--CCCC
Confidence 999999998765 4543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 194 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.34 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.19 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.01 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.72 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.67 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.62 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.62 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.55 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.42 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.4 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.35 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.26 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.24 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.08 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.06 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.04 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.04 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.96 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.94 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 96.73 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.39 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.39 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.23 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.03 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 95.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 95.73 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 95.66 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 95.63 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 95.07 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 94.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 93.89 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 92.83 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 92.83 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.51 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 90.82 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 88.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 87.92 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 87.38 | |
| d1khda1 | 69 | Anthranilate phosphoribosyltransferase (TrpD) {Pec | 86.27 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 85.93 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=4.4e-05 Score=58.10 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+..+-..+.+.|++++|...|+...+ +.| +...|..+-..|...|++++|...+...... .+.+...+..+...
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHH
Confidence 344566777889999999999999863 334 4778888999999999999999999887654 35578889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|.+.|++++|...|++..+. .| +..+|..+-..|.+.|+ .++|.+.|++.....|
T Consensus 315 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGK-----LQEALMHYKEAIRISP 370 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHTTCT
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 99999999999999987654 34 46678888899999999 8888888877655444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=0.00012 Score=55.61 Aligned_cols=131 Identities=7% Similarity=0.001 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-..+...|++++|...|+.... . .+.+...+..+-..+.+.|++++|...|.+..+.. +-+..+|..+...|
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALS-L-SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHH-H-hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566778889999999999999873 2 33467778888889999999999999999887653 23577899999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
...|++++|...++..... .+.+...+..+...+...|+ .++|.+.++......
T Consensus 282 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~al~~~ 335 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGN-----IEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTC-----HHHHHHHHHHHTTSC
T ss_pred HHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCC-----HHHHHHHHHHHHHhC
Confidence 9999999999999987665 35677888889999999999 888888887765443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1.3e-05 Score=60.87 Aligned_cols=121 Identities=9% Similarity=-0.004 Sum_probs=92.5
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
.+.+.+.+.+|.+.|....+...-.++...+..+-..+...|++++|...|.+..... +-+...|..+-.+|.+.|+++
T Consensus 145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 223 (323)
T d1fcha_ 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 223 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccch
Confidence 3445566778888888776444444567788888888999999999999999887653 225778889999999999999
Q ss_pred HHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 124 EAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+|...|+...+. .| +..+|..+-..|.+.|+ .++|.+.|+..
T Consensus 224 ~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~-----~~~A~~~~~~a 266 (323)
T d1fcha_ 224 EAVAAYRRALEL--QPGYIRSRYNLGISCINLGA-----HREAVEHFLEA 266 (323)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 999999987654 23 45678888888988888 66776666553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=0.00014 Score=55.06 Aligned_cols=129 Identities=11% Similarity=0.074 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR-AF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~-~~ 116 (194)
+...+....+.|+++.|..+|+... ..........|...+..+.+.|..++|.++|....+.+-. +...|..... -+
T Consensus 102 ~~~ya~~~~~~~~~~~a~~i~~~~l-~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~ 179 (308)
T d2onda1 102 YFAYADYEESRMKYEKVHSIYNRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 3445666667899999999999987 3333333567899999999999999999999988766522 3333333332 23
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
...|+.+.|..+|+.+... .+-+...|...++.+.+.|+ .+.|+.+|+....
T Consensus 180 ~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~-----~~~aR~~fe~ai~ 231 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNE-----DNNTRVLFERVLT 231 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHH
Confidence 4468899999999988765 34456788888888888899 8888888887543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00067 Score=43.88 Aligned_cols=96 Identities=10% Similarity=-0.073 Sum_probs=78.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
=+.+.+.|++++|+.+|+...+ . .+-+...|+.+=.+|.+.|++++|+..|.+..+.. +.+...|..+-.++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK-L-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-c-CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3456788999999999999973 1 33457788888889999999999999999998764 4488889999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChh
Q 029406 122 PSEAMFIYNEMRSSPATPISL 142 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ 142 (194)
+++|...|+...+. .|+..
T Consensus 87 ~~~A~~~~~~a~~~--~p~~~ 105 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH--EANNP 105 (117)
T ss_dssp HHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHHHh--CCCCH
Confidence 99999999998754 45543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.0004 Score=47.36 Aligned_cols=90 Identities=9% Similarity=0.001 Sum_probs=77.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCCh
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 122 (194)
..|.+.|+++.|+..|+...+ .. +-+...|..+=..|...|++++|...|.+..+.. +-+...|..+..+|...|++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIE-LN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHhhhccc-cc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 456799999999999999983 22 3368888888899999999999999999998764 33678999999999999999
Q ss_pred HHHHHHHHHhHhC
Q 029406 123 SEAMFIYNEMRSS 135 (194)
Q Consensus 123 ~~a~~l~~~M~~~ 135 (194)
++|...|++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.0017 Score=48.59 Aligned_cols=129 Identities=11% Similarity=0.054 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----------------
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKR----------------- 99 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----------------- 99 (194)
+..+-..+...|+++.|...|+...+ +.| +...|..+...|...|++++|...+.....
T Consensus 56 ~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (323)
T d1fcha_ 56 WQYLGTTQAENEQELLAISALRRCLE---LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 132 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred HHHHHHHHHHcCChHHHHHHHHhhhc---cccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhh
Confidence 34445556666777777777766652 123 355666666666666766666665554432
Q ss_pred --------------------------------c-CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHH
Q 029406 100 --------------------------------E-EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146 (194)
Q Consensus 100 --------------------------------~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 146 (194)
. .-.++..++..+-..+...|++++|...|+...... +-+..+|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 211 (323)
T d1fcha_ 133 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK 211 (323)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhh
Confidence 1 112355667778888889999999999999876542 234677888
Q ss_pred HHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 147 ILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 147 ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
+-..|...|+ .++|.+.++.....
T Consensus 212 lg~~~~~~g~-----~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 212 LGATLANGNQ-----SEEAVAAYRRALEL 235 (323)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHHH
T ss_pred hhhccccccc-----chhHHHHHHHHHHH
Confidence 8888999999 88888887766543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.67 E-value=0.00043 Score=48.38 Aligned_cols=89 Identities=7% Similarity=-0.153 Sum_probs=74.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSG 120 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g 120 (194)
=..+.+.|+++.|+..|+.... . .+-+...|+.+=.+|.+.|++++|+..|.+..+. .| +..+|..+-.+|.+.|
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~-~-~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg~~~~~l~ 86 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAIT-R-NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEME 86 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHHHHHHHCC
Confidence 3567889999999999998863 2 2346788888899999999999999999998754 44 5778999999999999
Q ss_pred ChHHHHHHHHHhHh
Q 029406 121 LPSEAMFIYNEMRS 134 (194)
Q Consensus 121 ~~~~a~~l~~~M~~ 134 (194)
++++|...|+...+
T Consensus 87 ~~~~A~~~~~~al~ 100 (201)
T d2c2la1 87 SYDEAIANLQRAYS 100 (201)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999997643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=0.001 Score=50.18 Aligned_cols=128 Identities=9% Similarity=0.000 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM-MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+...+..+.+.|.++.|.++|+...+... .+...|..... -+...|+.+.|..+|+.+... .+-+...|...+..
T Consensus 136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~--~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~ 212 (308)
T d2onda1 136 VYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDY 212 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHH
Confidence 356778888889999999999999973222 23333333322 234568999999999999875 34467899999999
Q ss_pred HhcCCChHHHHHHHHHhHhC-CCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSS-PATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~-g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+.+.|++++|..+|+..... +..|+ ...|...+.--...|+ .+.+.++++.+
T Consensus 213 ~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~-----~~~~~~~~~r~ 267 (308)
T d2onda1 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-----LASILKVEKRR 267 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-----HHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 99999999999999997665 45554 3467777766566677 55555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00034 Score=46.00 Aligned_cols=106 Identities=9% Similarity=0.000 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCCC-HHhHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK---VVEAKQVWEDLKREEVLFD-QHTFGDII 113 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~-~~ty~~li 113 (194)
|..+++.+...+++.+|.+.|+...+ --+.+..++..+=.++.+.++ +++|+.+|.+....+-.|+ ..+|..+-
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 56788889999999999999999873 223456777777777776554 5579999999877654444 34778888
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
.+|.+.|++++|...|+...+. .|+-.....+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l 111 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQT--EPQNNQAKEL 111 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 9999999999999999998774 4665444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00027 Score=45.93 Aligned_cols=94 Identities=6% Similarity=-0.023 Sum_probs=79.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchH
Q 029406 79 MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFR 158 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~ 158 (194)
+.+.+.|++++|+.+|.+..+.. +-+...|..+-.+|.+.|++++|...+....+.. +.+...|..+-.++...|+
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~-- 86 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR-- 86 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC--
Confidence 35678899999999999998764 4477889999999999999999999999987653 5578889999999999999
Q ss_pred HhHHHHHhhhcccccccCCch
Q 029406 159 EKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 159 ~~~~~~a~~~~~~m~~~~~~~ 179 (194)
.++|...++......|..
T Consensus 87 ---~~~A~~~~~~a~~~~p~~ 104 (117)
T d1elwa_ 87 ---FEEAKRTYEEGLKHEANN 104 (117)
T ss_dssp ---HHHHHHHHHHHHTTCTTC
T ss_pred ---HHHHHHHHHHHHHhCCCC
Confidence 899999988876655543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.0016 Score=45.93 Aligned_cols=119 Identities=9% Similarity=-0.083 Sum_probs=78.2
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
+...|+++.|++.|+.. ..|+...|..+=.+|...|++++|+..|.+..+.. +-+...|..+-.+|.+.|++++
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 34577888888877654 23666777777777778888888888888777654 3366677788888888888888
Q ss_pred HHHHHHHhHhC--C----------CC--CC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 125 AMFIYNEMRSS--P----------AT--PI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 125 a~~l~~~M~~~--g----------~~--p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|...|+..... + .. ++ ..++..+-.++.+.|+ .+.|.+.+.....
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~-----~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-----WKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHh
Confidence 88777775432 0 01 00 1234445556667777 6666666655433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=0.0005 Score=48.02 Aligned_cols=97 Identities=8% Similarity=-0.014 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVI 147 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~l 147 (194)
|+...+...=+.|.+.|++++|+..|.+..... +-+...|+.+-.+|.+.|++++|...|....+- .|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 344444444467889999999999999887764 447888999999999999999999999998653 454 6788889
Q ss_pred HHhhCCCCchHHhHHHHHhhhccccc
Q 029406 148 LKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 148 l~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
-.+|...|+ .+.|...|+...
T Consensus 79 g~~~~~l~~-----~~~A~~~~~~al 99 (201)
T d2c2la1 79 GQCQLEMES-----YDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHCCC-----HHHHHHHHHHHH
Confidence 999999999 888888777653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.00039 Score=47.42 Aligned_cols=91 Identities=8% Similarity=-0.039 Sum_probs=77.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHH
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~ 159 (194)
.|.+.|++++|+..|.+..+.. +-+...|..+-.+|...|++++|...|....+.. +-+..+|..+..++...|+
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~--- 93 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK--- 93 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC---
Confidence 5679999999999999998875 4478899999999999999999999999987652 3356789999999999999
Q ss_pred hHHHHHhhhcccccccCC
Q 029406 160 KVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 160 ~~~~~a~~~~~~m~~~~~ 177 (194)
.++|.+.++......|
T Consensus 94 --~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 94 --FRAALRDYETVVKVKP 109 (159)
T ss_dssp --HHHHHHHHHHHHHHST
T ss_pred --HHHHHHHHHHHHHcCC
Confidence 8888888887766554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.0026 Score=43.78 Aligned_cols=91 Identities=7% Similarity=-0.038 Sum_probs=72.8
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCCC-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHH
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRPD-------------MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 110 (194)
.+.+.|++++|+..|.....-....+. ..+|+-+-.+|.+.|++++|+..++...... +-+...|.
T Consensus 22 ~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~ 100 (170)
T d1p5qa1 22 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLS 100 (170)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhH
Confidence 567889999999999887632222211 2456667778899999999999999888764 33888999
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.+-.+|...|++++|...|+...+.
T Consensus 101 ~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 101 RRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.0015 Score=47.24 Aligned_cols=92 Identities=9% Similarity=-0.070 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+=..|.+.|++++|+..|+.... +.| +..+|+.+=.+|.+.|++++|+..|.+..+.. +-+..+|..+-.+|..
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~---l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhc---cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHH
Confidence 344567789999999999999973 345 47888899999999999999999999998753 2245678888999999
Q ss_pred CCChHHHHHHHHHhHhC
Q 029406 119 SGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~ 135 (194)
.|+++.|...|+...+.
T Consensus 118 ~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh
Confidence 99999999999987654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.40 E-value=0.0013 Score=42.18 Aligned_cols=90 Identities=10% Similarity=0.021 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
...-..+.+.|++.+|+..|+.... ..| +...|..+=.++.+.|++++|+..|.+..+.. +-+...|..+-.+|.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc---cccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 3444456778999999999999873 234 57888888888999999999999999887653 336788889999999
Q ss_pred cCCChHHHHHHHHHh
Q 029406 118 DSGLPSEAMFIYNEM 132 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M 132 (194)
..|++++|.+.|++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 999999999988864
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.35 E-value=0.0034 Score=43.80 Aligned_cols=100 Identities=11% Similarity=0.021 Sum_probs=78.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhc-CCC-C------------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEI-WYR-P------------------DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~-~~~-p------------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 102 (194)
......|++++|.+.|..-..-. |.. + ....+..+...+.+.|++++|+..+++.....
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~- 97 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH- 97 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-
Confidence 35567888999888888876311 111 1 11456778899999999999999999998764
Q ss_pred CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh-----CCCCCChhh
Q 029406 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS-----SPATPISLP 143 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t 143 (194)
+-+...|..++.+|.+.|+..+|.+.|+.... -|+.|...+
T Consensus 98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45889999999999999999999999998743 589998755
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00025 Score=46.73 Aligned_cols=98 Identities=9% Similarity=0.091 Sum_probs=78.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCCh---HHHHHHHHHhHhCCCCCC-hhhHHHHHHh
Q 029406 75 RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP---SEAMFIYNEMRSSPATPI-SLPFRVILKG 150 (194)
Q Consensus 75 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~---~~a~~l~~~M~~~g~~p~-~~ty~~ll~~ 150 (194)
..+++.+...+++++|.+.|++....+ +.+..++..+-.++.+.++. ++|..+|+......-.|+ ..+|..+-.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 567888999999999999999988765 44778888899999886655 469999999877643344 2467778888
Q ss_pred hCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 151 LIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
|.+.|+ .+.|.+.|+......|.
T Consensus 82 y~~~g~-----~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 82 NYRLKE-----YEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHHTTC-----HHHHHHHHHHHHHHCTT
T ss_pred HHHHhh-----hHHHHHHHHHHHHhCcC
Confidence 999999 99999999988776653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=0.0028 Score=47.21 Aligned_cols=166 Identities=8% Similarity=-0.016 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHhh---hhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhh---cCCCCC-HHHHHH
Q 029406 4 ESLMVAKELKRLQSHPVRFDRFIKSHVS---RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKE---IWYRPD-MFFYRD 76 (194)
Q Consensus 4 ~a~~vi~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~ 76 (194)
++-++++.-.+.......+...+....+ .-.-..|...-..|-..+++++|.+.|....+- .+-+++ ..+|+.
T Consensus 3 ~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~ 82 (290)
T d1qqea_ 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE 82 (290)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4555666655555554433333321111 111234566777788889999999999888521 122222 458888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhc----C-CCCCHHhHHHHHHHHh-cCCChHHHHHHHHHhHh----CCCCCC-hhhHH
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKRE----E-VLFDQHTFGDIIRAFS-DSGLPSEAMFIYNEMRS----SPATPI-SLPFR 145 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~----g-~~p~~~ty~~li~~~~-~~g~~~~a~~l~~~M~~----~g~~p~-~~ty~ 145 (194)
+-.+|.+.|++++|...+.+..+. | ...-..++..+...|- ..|++++|...|+...+ .+..+. ..+|.
T Consensus 83 ~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~ 162 (290)
T d1qqea_ 83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence 889999999999999999876542 2 1122456667777774 46999999999987642 232222 35677
Q ss_pred HHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 146 VILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 146 ~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
.+...+...|+ .+.|.++++....
T Consensus 163 ~la~~~~~~g~-----y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 163 KCADLKALDGQ-----YIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCh-----HHHHHHHHHHHHH
Confidence 78888999999 8888888776543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.08 E-value=0.01 Score=43.95 Aligned_cols=136 Identities=11% Similarity=-0.022 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHh---hcCCC-CCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHh----cCCCC-C
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRK---EIWYR-PDMFFYRDMLMMLA-RNKKVVEAKQVWEDLKR----EEVLF-D 105 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~-p~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~----~g~~p-~ 105 (194)
..+..+-.+|.+.|++++|.+.|+...+ ..+.. ....++..+...|- ..|++++|...+.+..+ .+-.+ -
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~ 157 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 3456677888889999999999997642 11111 12445566666664 46999999999987753 22222 2
Q ss_pred HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCC-CC--h---hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPAT-PI--S---LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 106 ~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~-p~--~---~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
..+|..+...|.+.|++++|..+|++.....-. +. . ..|......+...|+ ...|...++......
T Consensus 158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-----~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-----AVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-----HHHHHHHHHGGGCC-
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHhC
Confidence 356888999999999999999999997654211 11 1 112233334556788 777777777665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.0015 Score=49.56 Aligned_cols=133 Identities=7% Similarity=0.063 Sum_probs=91.7
Q ss_pred HHHHHhcC-CHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 42 LAEFQRQD-QVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 42 l~~~~~~~-~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
-..+...+ ++++|+..++...+ +.| +...|+.+=..+.+.|++++|+.+|.++.+.. +-+...|+.+...+.+.
T Consensus 84 ~~~l~~l~~~~~eal~~~~~al~---~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~ 159 (315)
T d2h6fa1 84 RVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEF 159 (315)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHH---HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHH
Confidence 33444544 58889988888863 334 57788888888888899999999998887753 33678888888889999
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCch-HHhHHHHHhhhcccccccCCch
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF-REKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~-~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
|++++|...|+...+.. +-+...|+.+-..+.+.+.. .....+.|.+.+.......|..
T Consensus 160 ~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~ 219 (315)
T d2h6fa1 160 KLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 219 (315)
T ss_dssp TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc
Confidence 99999999999887653 23455565443333222210 2233677888888777777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.0026 Score=45.82 Aligned_cols=120 Identities=6% Similarity=-0.116 Sum_probs=89.1
Q ss_pred HhHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHH
Q 029406 51 VFLCMKLYDVVRKEIWYRP--DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128 (194)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l 128 (194)
.+.++.-+++........+ ....|..+=..|.+.|++++|...|.+..... +-+..+|+.+-.+|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4556666667663222222 13355556678888999999999999988753 23678899999999999999999999
Q ss_pred HHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 129 ~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|+...+.. +-+..+|..+-..+...|+ .+.|.+.++......|
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~-----~~~A~~~~~~al~~~p 136 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGR-----DKLAQDDLLAFYQDDP 136 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhh-----HHHHHHHHHHHHhhcc
Confidence 99987652 2345678888888989999 8888888877655544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.04 E-value=0.016 Score=38.76 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=68.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCC---CC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHh
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYR---PD-----------MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~---p~-----------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 108 (194)
..+.+.|++..|+..|.......... ++ ..+|+.+-.+|.+.|++++|+..+.+..+.. +.+..+
T Consensus 25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka 103 (153)
T d2fbna1 25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKA 103 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhh
Confidence 34668899999999998876311111 11 2356667777888899999999998887664 447788
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
|..+-.+|...|+++.|...|+....-
T Consensus 104 ~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 104 LYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.04 E-value=0.012 Score=39.97 Aligned_cols=98 Identities=7% Similarity=-0.021 Sum_probs=71.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhc--CCCCC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHh
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEI--WYRPD-----------MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~--~~~p~-----------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 108 (194)
=..+.+.|++.+|...|+....-. ...++ ...|+-+=.+|.+.|++++|+..+.+..... +.+...
T Consensus 22 G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a 100 (168)
T d1kt1a1 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKG 100 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHH
Confidence 345677899999999987764211 11111 1234445556788999999999999988753 457889
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChh
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL 142 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 142 (194)
|..+-.+|...|++++|...|.....- .|+-.
T Consensus 101 ~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~ 132 (168)
T d1kt1a1 101 LYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNK 132 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence 999999999999999999999998764 45433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0014 Score=43.05 Aligned_cols=91 Identities=11% Similarity=0.172 Sum_probs=60.8
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCC----HHhHHHHHHHH
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFD----QHTFGDIIRAF 116 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~ty~~li~~~ 116 (194)
..+.+.|++++|+..|....+ . .+.+...|..+=.+|.+.|++++|+..+.+..+.. .... ..+|..+-..+
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKE-L-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-h-CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 356677888888888877763 2 22356777777777888888888888887766422 1111 24566666777
Q ss_pred hcCCChHHHHHHHHHhHhC
Q 029406 117 SDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~ 135 (194)
...++++.|...|+.-...
T Consensus 90 ~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 7777777877777776653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.0056 Score=39.89 Aligned_cols=102 Identities=7% Similarity=0.054 Sum_probs=80.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC--CCC---CC-hhhHHHHHHhhC
Q 029406 79 MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS--PAT---PI-SLPFRVILKGLI 152 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~---p~-~~ty~~ll~~~~ 152 (194)
..|.+.|++++|+..|.+..+.+ +.+...|..+-.+|.+.|++++|...++...+- +.. +. ..+|..+-..+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999998764 347889999999999999999999999997642 111 11 357888888899
Q ss_pred CCCchHHhHHHHHhhhcccccccCCchhhhhhhh
Q 029406 153 PYPEFREKVKDDFLELFPDMIVYDPPEDLFEDQE 186 (194)
Q Consensus 153 ~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 186 (194)
..++ .+.|.+.|+.-....+.+++.....
T Consensus 91 ~~~~-----~~~A~~~~~kal~~~~~~~~~~~l~ 119 (128)
T d1elra_ 91 KEEK-----YKDAIHFYNKSLAEHRTPDVLKKCQ 119 (128)
T ss_dssp HTTC-----HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhCC-----HHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8999 9999999988766666666665443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.94 E-value=0.0045 Score=43.13 Aligned_cols=70 Identities=3% Similarity=-0.102 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----hcCCCCCHHh
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK-----REEVLFDQHT 108 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~-----~~g~~p~~~t 108 (194)
.+..+...+.+.|++++|+..++.... --+-+...|..+|.+|.+.|+..+|++.|+++. +.|+.|+..+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345678888899999999999999973 233479999999999999999999999999875 4699998765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.92 E-value=0.0018 Score=41.37 Aligned_cols=86 Identities=9% Similarity=0.036 Sum_probs=71.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchH
Q 029406 79 MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFR 158 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~ 158 (194)
..+.+.|++++|...|++..... +-+...|..+-.+|.+.|++++|...|+...+-. +-+...|..+...|...|+
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~-- 99 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN-- 99 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC--
Confidence 45678999999999999998764 2268899999999999999999999999986652 4457888889999998888
Q ss_pred HhHHHHHhhhccc
Q 029406 159 EKVKDDFLELFPD 171 (194)
Q Consensus 159 ~~~~~~a~~~~~~ 171 (194)
.++|.+.++.
T Consensus 100 ---~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ---ANAALASLRA 109 (112)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 8888877763
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.024 Score=42.57 Aligned_cols=112 Identities=8% Similarity=-0.061 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
..-..+.+.|++++|++.|+...+ --+-+...|+.+-..+.+.|++++|+..|++..+.... +...|+.+-..+.+.
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHc
Confidence 444556678899999999999873 22335888999999999999999999999998876533 667787776666666
Q ss_pred CC------hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC
Q 029406 120 GL------PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155 (194)
Q Consensus 120 g~------~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g 155 (194)
+. +++|...+....+.. +-+...|+.+...+...|
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~ 234 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG 234 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC
T ss_pred cccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC
Confidence 55 467777887777662 456778888877776554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.053 Score=36.77 Aligned_cols=74 Identities=1% Similarity=-0.124 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIR 114 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~ 114 (194)
.+..+-.+|.+.|+++.|+..++...+ +.| +...|..+-.+|...|++++|...|.+..+. .| |......+-.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~---~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALE---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhh---ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345567778899999999999999973 235 7889999999999999999999999998775 34 4444444333
Q ss_pred H
Q 029406 115 A 115 (194)
Q Consensus 115 ~ 115 (194)
.
T Consensus 139 ~ 139 (170)
T d1p5qa1 139 C 139 (170)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.39 E-value=0.0089 Score=40.16 Aligned_cols=93 Identities=6% Similarity=-0.074 Sum_probs=73.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcC----CCCC-----------HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhh
Q 029406 79 MMLARNKKVVEAKQVWEDLKREE----VLFD-----------QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLP 143 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~g----~~p~-----------~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 143 (194)
..+.+.|++.+|+..|.+....- ..++ ..+|+.+-.+|.+.|++++|+..++...+.. +-+..+
T Consensus 25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka 103 (153)
T d2fbna1 25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKA 103 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhh
Confidence 35668899999999998877421 1111 3478889999999999999999999987652 456789
Q ss_pred HHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 144 FRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 144 y~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|..+..++...|+ ++.|...|+......|
T Consensus 104 ~~~~g~~~~~lg~-----~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 104 LYKLGVANMYFGF-----LEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHHTC-----HHHHHHHHHHHHHHST
T ss_pred hHHhHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 9999999999999 8999999888766655
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.23 E-value=0.076 Score=35.70 Aligned_cols=106 Identities=8% Similarity=-0.001 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhh-------------cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKE-------------IWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD 105 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~-------------~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 105 (194)
..-..+.+.|++..|++.|....+. ..+.| +...|+.+=.+|.+.|++++|+..+.+..+.. +-+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~ 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSN 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhh
Confidence 4455567788888888888765310 01122 34455666677888899999999999887654 347
Q ss_pred HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHH
Q 029406 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVIL 148 (194)
Q Consensus 106 ~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll 148 (194)
...|..+-.+|.+.|+++.|...|+...+- .| +...+..+-
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~ 152 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 778899999999999999999999987664 33 334444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.03 E-value=0.1 Score=34.59 Aligned_cols=92 Identities=14% Similarity=-0.030 Sum_probs=68.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCC-
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPD----------MFFYRDMLMMLARNKKVVEAKQVWEDLKRE-----EVLFD- 105 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~----------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~- 105 (194)
-..+.+.|++++|++.|++-..-..-.|+ ..+|+.+=.+|.+.|++++|..-+.+.... ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44556789999999999998732222232 467888888999999999999888877642 12222
Q ss_pred ----HHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 106 ----QHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 106 ----~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
...|+.+-.+|...|++++|...|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2357778899999999999999999854
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=95.85 E-value=0.13 Score=34.46 Aligned_cols=80 Identities=6% Similarity=-0.082 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-.+|.+.|++++|+..++...+ . -+.+...|..+-.+|...|++++|...|.+..... +.+......+-.+..
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~-l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALG-L-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhh-c-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455677889999999999999973 2 34568899999999999999999999999987642 234444444444433
Q ss_pred cCC
Q 029406 118 DSG 120 (194)
Q Consensus 118 ~~g 120 (194)
+.+
T Consensus 144 ~~~ 146 (168)
T d1kt1a1 144 KAK 146 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.73 E-value=0.029 Score=37.90 Aligned_cols=96 Identities=10% Similarity=-0.075 Sum_probs=72.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhc--------------CCC-CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCCh
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKRE--------------EVL-FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~--------------g~~-p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 141 (194)
.-..+.+.|++++|+..|.+.... .+. .+...|+.+-.+|.+.|++++|+..+....+.. +-+.
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~ 111 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT 111 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhh
Confidence 445567888999888888765421 111 244567778889999999999999999987652 4457
Q ss_pred hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 142 LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 142 ~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
.+|..+-.++...|+ .+.|.+.|+......|.
T Consensus 112 ~a~~~~g~~~~~l~~-----~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 112 KALYRRAQGWQGLKE-----YDQALADLKKAQEIAPE 143 (169)
T ss_dssp HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTT
T ss_pred hHHHhHHHHHHHccC-----HHHHHHHHHHHHHhCCC
Confidence 888889999999999 88888888877666554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.66 E-value=0.066 Score=39.88 Aligned_cols=107 Identities=7% Similarity=-0.035 Sum_probs=74.8
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCCCHHhHHHHH-HHHhcCCCh
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK--KVVEAKQVWEDLKREEVLFDQHTFGDII-RAFSDSGLP 122 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~ty~~li-~~~~~~g~~ 122 (194)
...+++.+|+.+|+...+ ..+-+...|..+-.++...+ +.++|...+....+.. +++...+...+ ..+...+..
T Consensus 84 ~~~~~~~~al~~~~~~l~--~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 84 ESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcccc
Confidence 345667889999999863 22335667777766666655 5899999999987763 33566655444 666678999
Q ss_pred HHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 123 ~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
+.|...++...+.. +-+...|+.+-..+.+.|+
T Consensus 161 ~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 161 AEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 99999999886663 3356677777666666665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.082 Score=38.45 Aligned_cols=123 Identities=7% Similarity=-0.049 Sum_probs=78.0
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC-CCHHhHHHHHHHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPD---MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VL-FDQHTFGDIIRAF 116 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~-p~~~ty~~li~~~ 116 (194)
+...|++++|.++|+...+...-.++ ...++.+-..|...|++++|...|.+..+.. .. ....++..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 45689999999999887632111111 2356666678888899999999988776422 11 1234567777788
Q ss_pred hcCCChHHHHHHHHHhHh----CCCCCC---hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 117 SDSGLPSEAMFIYNEMRS----SPATPI---SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~----~g~~p~---~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
...|++..+...+..... .+..+. ...+..+-..+...|+ .+.+...+...
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-----~~~a~~~~~~~ 159 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-----LDEAEASARSG 159 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc-----hhhhHHHHHHH
Confidence 888999998888876532 222211 2345555566777777 55555555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.47 E-value=0.0045 Score=45.95 Aligned_cols=54 Identities=11% Similarity=0.008 Sum_probs=45.2
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
..+.|++++|+..|+.-.+ --+-|...+..+...|+..|++++|...|+...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3467999999999999873 23447889999999999999999999999988765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.3 Score=33.51 Aligned_cols=102 Identities=9% Similarity=-0.081 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------------CC-
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE------------EV- 102 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------------g~- 102 (194)
..+..+=.++...|++++|++.|+.-.+ .. +-+...|+.+=.+|.+.|++++|+.-|++.... |.
T Consensus 37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~-ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~ 114 (192)
T d1hh8a_ 37 RICFNIGCMYTILKNMTEAEKAFTRSIN-RD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 114 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHH-Hh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhh
Confidence 4456677778889999999999999973 22 235778888888899999999999999987642 11
Q ss_pred -CCC-HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC
Q 029406 103 -LFD-QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139 (194)
Q Consensus 103 -~p~-~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p 139 (194)
.++ ..++..+-.+|.+.|++++|...|.........|
T Consensus 115 ~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 115 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 111 2456667778999999999999998876654333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.27 Score=35.47 Aligned_cols=128 Identities=11% Similarity=-0.016 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhh---cCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CCCHHhHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKE---IWYRP--DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV---LFDQHTFGD 111 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~---~p~~~ty~~ 111 (194)
.....+...+++..+...+...... .+..+ ....+..+...+...|++++|...+.......- ......+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3445556678888888887766421 11111 133456677788889999999999887664332 223456677
Q ss_pred HHHHHhcCCChHHHHHHHHHhHh----CCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 112 IIRAFSDSGLPSEAMFIYNEMRS----SPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+...|...|+++.|...++.... .+..|+ ..+|..+-..|...|+ .++|.+.++..
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~l~~A 317 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR-----KSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 88899999999999999998643 354554 4567777788888999 66666666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.29 Score=29.41 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=12.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
+++.+-.+|.+.|++++|...+++..
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHH
Confidence 44444444555555555555554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=93.89 E-value=0.42 Score=31.32 Aligned_cols=95 Identities=8% Similarity=-0.072 Sum_probs=66.6
Q ss_pred HHHHH--HHHHHhCCCHHHHHHHHHHHHhcC-CCCC----------HHhHHHHHHHHhcCCChHHHHHHHHHhHhC----
Q 029406 73 FYRDM--LMMLARNKKVVEAKQVWEDLKREE-VLFD----------QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS---- 135 (194)
Q Consensus 73 ~~~~l--i~~~~~~g~~~~a~~l~~~m~~~g-~~p~----------~~ty~~li~~~~~~g~~~~a~~l~~~M~~~---- 135 (194)
.|..+ -..+.+.|++++|+..|.+..+.. -.|+ ...|+.+-.+|.+.|+++.|...++....-
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 45555 345567799999999999887522 1122 467999999999999999999988886531
Q ss_pred -CCCCC-----hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 136 -PATPI-----SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 136 -g~~p~-----~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
...++ ...|+.+-.+|...|+ .++|.+.|+..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~-----~eeA~~~~~~A 126 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGR-----GAEAMPEFKKV 126 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHH-----HHHHHHHHHHH
Confidence 12222 2245666788889999 67666666653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.83 E-value=1.4 Score=33.14 Aligned_cols=47 Identities=9% Similarity=-0.046 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.....++..|-..|.+++...++...... -.++...|+-++..|++.
T Consensus 100 d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 100 DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 33344445555555555554444443211 123444455555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=92.83 E-value=0.15 Score=37.25 Aligned_cols=53 Identities=9% Similarity=-0.064 Sum_probs=46.7
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 82 ~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.+.|++++|+..+.+..+.. +-|...+..+...|+..|++++|...|+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 46799999999999988764 448899999999999999999999999998654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.51 E-value=0.65 Score=28.56 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+.=++.+-++.+-...+.|+.....+.+.+|-+.+++..|.++|+..+.+ +.++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 34444555555555566666666777777776667777777766666544 2233445555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.93 Score=26.96 Aligned_cols=68 Identities=6% Similarity=-0.029 Sum_probs=52.3
Q ss_pred chhhHHHHHHHHHhcCCHhHHHHHHHHHHhhc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 34 LKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI----WYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
+..++..+=..+.+.|++..|...|++-.+.. ...++ ..+++.+=.+|.+.|++++|+..+++..+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 44567777777889999999999998875321 11223 5678888899999999999999999998773
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.04 E-value=1.5 Score=26.83 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=46.9
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+.-+..+-++.+. .....|+.....+.+++|-|.+++.-|.++|+..+... .++...|.-++.
T Consensus 21 D~we~rrgmN~l~-~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 3334555566666 67889999999999999999999999999999887543 224445665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.92 E-value=0.71 Score=29.94 Aligned_cols=101 Identities=12% Similarity=-0.064 Sum_probs=64.2
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh----------CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLAR----------NKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~----------~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
-+.+.+++|.+.|+...+ +.|+ ...++.+=.+|.. .+.+++|+..|++..+-. +-+..+|..+-.
T Consensus 8 ~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~ 83 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHH
Confidence 345668899999999873 3354 4444444334432 344678888888887653 336677887777
Q ss_pred HHhcCC-----------ChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 115 AFSDSG-----------LPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 115 ~~~~~g-----------~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
+|...| .++.|...|+...+- .|+-.+|.--+..+-
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHHH
Confidence 776654 357777777776543 577666665555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.92 E-value=3.6 Score=29.75 Aligned_cols=121 Identities=10% Similarity=-0.042 Sum_probs=79.1
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCCHH-HHHH---HHHHHHh-------CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPDMF-FYRD---MLMMLAR-------NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~---li~~~~~-------~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.....++|+++++.... ..|+-. .|+. ++..... .|.+++|+.+++...+.. +-+...|..+-.+
T Consensus 41 ~~~~~~~al~~~~~~l~---~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~ 116 (334)
T d1dcea1 41 AGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (334)
T ss_dssp TTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHH
Confidence 34455899999999973 447643 3433 2232223 345789999999887654 3366777777777
Q ss_pred HhcCC--ChHHHHHHHHHhHhCCCCCChhhHHHHH-HhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSG--LPSEAMFIYNEMRSSPATPISLPFRVIL-KGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g--~~~~a~~l~~~M~~~g~~p~~~ty~~ll-~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...+ +.++|...+....+. .+++...+...+ ..+...|. .+.|...++.....+|
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~-----~~~Al~~~~~~i~~~p 175 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEA-DERNFHCWDYRRFVAAQAAVA-----PAEELAFTDSLITRNF 175 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTCCC-----HHHHHHHHHTTTTTTC
T ss_pred HHHhccccHHHHHHHHHHHHhh-CchhhhhhhhHHHHHHHhccc-----cHHHHHHHHHHHHcCC
Confidence 77765 478999999998765 234455544333 55656777 7788888777665554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.38 E-value=1.8 Score=32.48 Aligned_cols=108 Identities=7% Similarity=0.059 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.++..++..+.+.+++..|.+++.... +..+|..+...|.+.....-| .+.......+......++..
T Consensus 41 ~d~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ 108 (336)
T d1b89a_ 41 SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINY 108 (336)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHH
Confidence 345567788888888888877766442 566888888888887766554 23334455577777899999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
|-..|.++..+.+++..... -.++...|+-++..|++.+.
T Consensus 109 ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~ 148 (336)
T d1b89a_ 109 YQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP 148 (336)
T ss_dssp HHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh
Confidence 99999999999999976533 24677788899999998765
|
| >d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Methionine synthase domain-like superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain domain: Anthranilate phosphoribosyltransferase (TrpD) species: Pectobacterium carotovorum [TaxId: 554]
Probab=86.27 E-value=1.7 Score=24.37 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCC
Q 029406 74 YRDMLMMLARNKK--VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137 (194)
Q Consensus 74 ~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~ 137 (194)
|..+|+-....++ .+++.++++.+.. |-.++...=.-|+....+.-..++...+.+.|++++.
T Consensus 2 ~~~il~kl~~g~~Ls~ee~~~~~~~i~~-g~~~d~qiaafL~al~~kg~t~dEi~g~~~am~~~~~ 66 (69)
T d1khda1 2 HQPILEKLFKSQSMTQEESHQLFAAIVR-GELEDSQLAAALISMKMRGERPEEIAGAASALLADAQ 66 (69)
T ss_dssp CHHHHHHHHTTCCCCHHHHHHHHHHHTT-TCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 4445555544332 4555556655533 2233455445555555555555555556666655543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=85.93 E-value=2.7 Score=26.32 Aligned_cols=113 Identities=5% Similarity=-0.081 Sum_probs=62.6
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc----CCChHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD----SGLPSEA 125 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~a 125 (194)
++++|++.|..-- +.|.... +..| +.....+.++|+..+.+..+.| +...+..|=..|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa-~~g~~~a---~~~l--~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKAC-ELNEMFG---CLSL--VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHH-HTTCTTH---HHHH--HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHH-HCCChhh---hhhh--ccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 5667777777765 3443221 1112 1223456788888888777776 34444444444443 3567888
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhC----CCCchHHhHHHHHhhhcccccccCCch
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLI----PYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~----~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
..+|+.-.+.|.+ .....|-..|. -..+ ...|.++++.-...|.++
T Consensus 79 ~~~~~~aa~~g~~---~a~~~Lg~~y~~G~gv~~d-----~~~A~~~~~~Aa~~G~~~ 128 (133)
T d1klxa_ 79 AQYYSKACGLNDQ---DGCLILGYKQYAGKGVVKN-----EKQAVKTFEKACRLGSED 128 (133)
T ss_dssp HHHHHHHHHTTCH---HHHHHHHHHHHHTSSSCCC-----HHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhccCcc---hHHHHHHHHHHcCCccCCC-----HHHHHHHHHHHHHCCCHH
Confidence 8888887777643 22222222222 2234 777777777665555543
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