Citrus Sinensis ID: 029419

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR
Secondary Structure (PSIPRED)
ccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEccccccEEcccccccccccccEEEEEEEcccccccccEEEEccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcHccccccccccEEEEccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcEEccccccccccEEEEEEEcccccEEEEEEEccccccccEEEEEEEEEEEccccEEEEEEccHHHHccccccccEEEE
Coil and Loop (DISEMBL)
mslrnsclsrrisrsfgeahkssketglgaaddsvvssttsasmdsgaaaahssgswagLLPELLGEIIRRVettedswphrqnvvACACVCKRWREITKDivkspflsgkitfpsclkqpgprefphqclirrnkkTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLdagdlsqgsnayvgklr
Flexible Loop (DISEMBL)
mslrnsclsrrisrsfgeahkssketglgaaddSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVEttedswphrqnvVACACVCKRWREITKdivkspflsgkitfpsclkqpgpREFPHQCLIRRNKKTSTFYLYLAltpsfsekGKFLLAARRYRRGAHSEYIisldagdlsqgsnayvgklr
Low Complexity Region (SEG)
MSLRNSCLSRRISRSFGEAHKSSKETGLGaaddsvvssttsasmdsgaaaahssgswagLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR
Disordered region (IsUnstruct)
********************************************************WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAG**************
Disordered Region (DISOPRED)
***********************************************************LLPELLGEIIRRV*******PHRQNVVACACVCKRWREITK************TFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR
Disordered Region (DISEMBL)
********SRRISRS***************************************GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR
Disordered Region (DISPRO)
*SLRNSCLSRRISRSFGEAHKSSKETG*G************************SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q93VI8	379	Tubby-like F-box protein	yes	no	0.932	0.474	0.642	8e-64
Q5QM27	356	Tubby-like F-box protein	yes	no	0.709	0.384	0.681	5e-53
Q68Y48	372	Tubby-like F-box protein	yes	no	0.709	0.368	0.649	6e-50
Q688Y7	352	Tubby-like F-box protein	no	no	0.694	0.380	0.637	3e-47
Q69U54	451	Tubby-like F-box protein	no	no	0.709	0.303	0.579	3e-43
Q8VY21	406	Tubby-like F-box protein	no	no	0.839	0.399	0.505	2e-42
Q10LG8	403	Tubby-like F-box protein	no	no	0.709	0.339	0.569	2e-42
Q8H485	406	Tubby-like F-box protein	no	no	0.766	0.364	0.527	1e-41
Q9ZP59	455	Tubby-like F-box protein	no	no	0.709	0.301	0.550	2e-41
Q94DT9	368	Tubby-like F-box protein	no	no	0.709	0.372	0.554	2e-41

>sp|Q93VI8|TLP7_ARATH Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1

 Score =  243 bits (619), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 142/193 (73%), Gaps = 13/193 (6%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 1   MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 47

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 48  LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 107

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA D
Sbjct: 108 PGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADD 167

Query: 181 LSQGSNAYVGKLR 193
            SQGSNAYVGKLR
Sbjct: 168 FSQGSNAYVGKLR 180

Arabidopsis thaliana (taxid: 3702)

>sp|Q5QM27|TLP1_ORYSJ Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1

 Score =  206 bits (525), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 94/138 (68%), Positives = 114/138 (82%), Gaps = 1/138 (0%)

Query: 57  WAGLLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFP 115
           WA LLPEL+ E++RRVE +  + WP R++VV+CACVC+RWR+    +V+ P  SGKITFP
Sbjct: 34  WARLLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFP 93

Query: 116 SCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIIS 175
           S LKQPGPREFP QC I+RNKK STFYLYL LT +  +KGKFL+AARR+RRG H+EYI+S
Sbjct: 94  SSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLTNATVDKGKFLMAARRFRRGPHTEYIVS 153

Query: 176 LDAGDLSQGSNAYVGKLR 193
           LDA DLSQGSNAY+GKLR
Sbjct: 154 LDADDLSQGSNAYMGKLR 171

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q68Y48|TLP9_ORYSJ Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1

 Score =  196 bits (499), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 108/137 (78%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W+ LLPELL EI+RRV+   + WP R++VVACACVC+RWR+    +V+ P   G+ITFPS
Sbjct: 52  WSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPS 111

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISL 176
            LKQPGPR+ P  C IRRNKK STFYLYL+LT + ++KGKFLLAARR+R GAH+EYIIS 
Sbjct: 112 SLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQALTDKGKFLLAARRFRNGAHTEYIISY 171

Query: 177 DAGDLSQGSNAYVGKLR 193
           D  DL  GSN+YVGKLR
Sbjct: 172 DCDDLFPGSNSYVGKLR 188

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q688Y7|TLP10_ORYSJ Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1

 Score =  187 bits (475), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/135 (63%), Positives = 108/135 (80%), Gaps = 1/135 (0%)

Query: 60  LLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCL 118
           LLPEL+ E++RRVE +  + WP R+++V+CACVC+RWRE    +V+    SG+ITFPS L
Sbjct: 27  LLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSL 86

Query: 119 KQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDA 178
           KQPGP++FP QC ++RNKK S FYLYL L     +KGKFL+AARR+RRG H+EY+ISLDA
Sbjct: 87  KQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDA 146

Query: 179 GDLSQGSNAYVGKLR 193
            DLSQGSNAYVGKLR
Sbjct: 147 DDLSQGSNAYVGKLR 161

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W GL PELL ++++R+E  E +WP R++VVACA VC+ WREI KDIV+SP + GK+TFP 
Sbjct: 59  WVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPV 118

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIIS 175
            LKQPGPR+   QC I+R+K   T+YLYL L+P+  SE GKFLLAA+R RR   +EYIIS
Sbjct: 119 SLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIIS 178

Query: 176 LDAGDLSQGSNAYVGKLR 193
           +D+ ++S+ SN YVGK+R
Sbjct: 179 VDSKNISRSSNGYVGKMR 196

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 6/168 (3%)

Query: 27  GLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV 86
           G G +    V   TS  +D     A     WA + PELL +++ R+E +ED+WP R+NVV
Sbjct: 27  GYGRSRSQRVVQDTSVPVD-----AFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVV 81

Query: 87  ACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLA 146
           +CA VC+ WREI K+IV+ P LS K+TFP  LKQPGPR    QC I RN+   T+YLYL 
Sbjct: 82  SCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLG 141

Query: 147 LTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR 193
           L  + S + GKFLLAA+R+RR   ++YIISL+  D+S+GSN Y+GKLR
Sbjct: 142 LNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLR 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1

 Score =  171 bits (434), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 104/137 (75%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           WA L PELL E++ R+E +E  WP R++VVACA VC+ WR ITK+IV+ P  SGK+TFP 
Sbjct: 52  WAQLPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPI 111

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISL 176
            LKQPGPR+   +C IRRN+ T T+YLY+ LT + ++ GKFLLAAR+ R+   ++Y+ISL
Sbjct: 112 SLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISL 171

Query: 177 DAGDLSQGSNAYVGKLR 193
           D  D+S+GSN Y+GKLR
Sbjct: 172 DMSDMSKGSNTYIGKLR 188

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 105/148 (70%)

Query: 46  SGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKS 105
           S AA       W  L PELL E++ RVE +E  WP R++VVACA VC+ WR I ++IV++
Sbjct: 44  SAAALVMRESCWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRT 103

Query: 106 PFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYR 165
           P  SG +TFP  LKQPGPR+ P +C I RN+ T T+YLY+ LT + ++ GKFLLAAR+ R
Sbjct: 104 PEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCR 163

Query: 166 RGAHSEYIISLDAGDLSQGSNAYVGKLR 193
           R   +EY+ISLD  D+S+ +++YVGKLR
Sbjct: 164 RTTCTEYLISLDMNDISKRTDSYVGKLR 191

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZP59|TLP1_ARATH Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 105/138 (76%), Gaps = 1/138 (0%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           WA L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP 
Sbjct: 57  WANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPV 116

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIIS 175
            LKQPGPR+   QC I+R+K   T++LYL L+P+   E GKFLL+A+R RR  ++EY+IS
Sbjct: 117 SLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVIS 176

Query: 176 LDAGDLSQGSNAYVGKLR 193
           + A  +S+ SN Y+GK+R
Sbjct: 177 MHADTISRSSNTYIGKIR 194

Arabidopsis thaliana (taxid: 3702)

>sp|Q94DT9|TLP2_ORYSJ Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 100/137 (72%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W+ L+P+LL +I+R VE   + WP R++VVACA VC+RWR++   +V+ P  SGKITFPS
Sbjct: 51  WSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPS 110

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISL 176
            LKQPGPR+ P QC I+RNKK STF+LYL LT   ++  KFLLAARR RRG H EY I++
Sbjct: 111 SLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITI 170

Query: 177 DAGDLSQGSNAYVGKLR 193
           ++  L  GS + VG L+
Sbjct: 171 NSDGLFHGSQSCVGNLK 187

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
356549655	381	PREDICTED: tubby-like F-box protein 7-li	0.948	0.480	0.625	4e-66
356544096	378	PREDICTED: tubby-like F-box protein 7-li	0.937	0.478	0.640	1e-65
302399099	378	TLP domain class transcription factor [M	0.968	0.494	0.666	4e-65
255567112	381	conserved hypothetical protein [Ricinus	0.984	0.498	0.640	1e-63
297853112	382	hypothetical protein ARALYDRAFT_892366 [	0.937	0.473	0.641	3e-62
224116990	332	predicted protein [Populus trichocarpa]	0.689	0.400	0.814	3e-62
18404413	379	Tubby-like F-box protein 7 [Arabidopsis	0.932	0.474	0.642	4e-62
357452139	371	Tubby-like F-box protein [Medicago trunc	0.917	0.477	0.640	6e-62
7769867	579	F12M16.22 [Arabidopsis thaliana]	0.932	0.310	0.642	6e-62
449438923	380	PREDICTED: tubby-like F-box protein 7-li	0.751	0.381	0.751	9e-62

>gi|356549655|ref|XP_003543207.1| PREDICTED: tubby-like F-box protein 7-like [Glycine max]

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 147/192 (76%), Gaps = 9/192 (4%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR    SR+ SRSF E   +     +G  D             +G  +++ +  W+ +
Sbjct: 1   MSLRKVFRSRKFSRSFKEVLPAEGAAIVGGED---------GVAGAGEESSNGNNGWSNM 51

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPE+LGEI+RRV+  E+ WP+RQNVVACACVCKRWR+IT+++V+ P  +GKITFP+CLKQ
Sbjct: 52  LPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPACLKQ 111

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+ PHQCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARRYR G H+EYIISLDA D
Sbjct: 112 PGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADD 171

Query: 181 LSQGSNAYVGKL 192
           LSQGSNAYVGKL
Sbjct: 172 LSQGSNAYVGKL 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544096|ref|XP_003540491.1| PREDICTED: tubby-like F-box protein 7-like [Glycine max]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 149/192 (77%), Gaps = 11/192 (5%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR    SR+ S+SF E   +      GAA +  V+ T         AA  ++  W+ +
Sbjct: 1   MSLRKVFRSRKFSKSFKEVLPAE-----GAAVEGGVAGTVEE------AANGNNNGWSSM 49

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPE+LGEI+RRV+  E+ WP+RQNVVACACVCKRWR+IT+++V+ P  +GKITFPSCLKQ
Sbjct: 50  LPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPSCLKQ 109

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+ PHQCLI+RN+KTSTFYLYLALTPSF++KGKFLLAARRYR G H+EYIISLDA D
Sbjct: 110 PGPRDVPHQCLIKRNQKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADD 169

Query: 181 LSQGSNAYVGKL 192
           LSQGSNAYVGKL
Sbjct: 170 LSQGSNAYVGKL 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399099|gb|ADL36844.1| TLP domain class transcription factor [Malus x domestica]

 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 150/192 (78%), Gaps = 5/192 (2%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR +  SR+ S+SF E   S ++   G  D  VV  +  A   S  +++      + +
Sbjct: 1   MSLRKAFRSRKFSKSFRELKLSDEDQARGG-DRRVVRDSDCADSSSSTSSSSW----SDM 55

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE +ED WPHR+NVVACACVCKRWR+ITK+I +SP  SGKITFPSCLKQ
Sbjct: 56  LPELLGEIIRRVEASEDKWPHRKNVVACACVCKRWRDITKEIARSPSYSGKITFPSCLKQ 115

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+FPHQCLI+RNKKTSTFYLYLALT SF++KGKFLLAARRYR G + EYIISLDA D
Sbjct: 116 PGPRDFPHQCLIKRNKKTSTFYLYLALTSSFTDKGKFLLAARRYRHGTNYEYIISLDADD 175

Query: 181 LSQGSNAYVGKL 192
           +SQGSNAYVGKL
Sbjct: 176 ISQGSNAYVGKL 187

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567112|ref|XP_002524538.1| conserved hypothetical protein [Ricinus communis] gi|223536212|gb|EEF37865.1| conserved hypothetical protein [Ricinus communis]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSL+    SRR S+SF   +   ++  L      V         D           W  +
Sbjct: 1   MSLKKLIRSRRFSKSFKCVNNHKEDIALVVP--GVHDGGGGGGGDELWGEWEERDGWGSM 58

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEII+RVE +ED WP RQNVVACACVCK+WREI KDIVKSP  +GKITFPSCLK 
Sbjct: 59  LPELLGEIIKRVEESEDRWPQRQNVVACACVCKKWREIAKDIVKSPNNTGKITFPSCLKL 118

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGP + P+QCLI+RNKKTSTFYLYLALTPSF +KGKFLLAARRYR GA  EYIISLDA D
Sbjct: 119 PGPHDLPYQCLIKRNKKTSTFYLYLALTPSFMDKGKFLLAARRYRHGARMEYIISLDADD 178

Query: 181 LSQGSNAYVGKL 192
           LSQGSNAYVGKL
Sbjct: 179 LSQGSNAYVGKL 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853112|ref|XP_002894437.1| hypothetical protein ARALYDRAFT_892366 [Arabidopsis lyrata subsp. lyrata] gi|297340279|gb|EFH70696.1| hypothetical protein ARALYDRAFT_892366 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 147/195 (75%), Gaps = 14/195 (7%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGS-WAG 59
           M L  S LSRRIS SF   H+               ++  S S +S    ++ +GS W+ 
Sbjct: 1   MPLSRSLLSRRISNSFRFHHQGE------------TTAPESDSYESIPPPSNMAGSSWSA 48

Query: 60  LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFL-SGKITFPSCL 118
           +LPELLGEIIRRVE TEDSWP R++VV CACV K+WREIT+D  +S  L SGKITFPSCL
Sbjct: 49  MLPELLGEIIRRVEETEDSWPQRRDVVTCACVSKKWREITQDFARSSSLNSGKITFPSCL 108

Query: 119 KQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDA 178
           K PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA
Sbjct: 109 KLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDA 168

Query: 179 GDLSQGSNAYVGKLR 193
            D SQGSNAYVGKLR
Sbjct: 169 DDFSQGSNAYVGKLR 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116990|ref|XP_002331802.1| predicted protein [Populus trichocarpa] gi|222874498|gb|EEF11629.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/140 (81%), Positives = 125/140 (89%), Gaps = 7/140 (5%)

Query: 60  LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKS-PFL------SGKI 112
           +LPELLGEII+RVE +ED WP RQNVVACACVCK+WRE+TKDIVKS P        SGKI
Sbjct: 1   MLPELLGEIIKRVEESEDRWPQRQNVVACACVCKKWREVTKDIVKSLPNNNNNNGSSGKI 60

Query: 113 TFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEY 172
           TFPSCLKQPGPR+ PHQCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARRYR+G H+EY
Sbjct: 61  TFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRQGVHTEY 120

Query: 173 IISLDAGDLSQGSNAYVGKL 192
           IISLDA DLSQGSNAYVGKL
Sbjct: 121 IISLDADDLSQGSNAYVGKL 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404413|ref|NP_564627.1| Tubby-like F-box protein 7 [Arabidopsis thaliana] gi|75249264|sp|Q93VI8.1|TLP7_ARATH RecName: Full=Tubby-like F-box protein 7; Short=AtTLP7 gi|13877767|gb|AAK43961.1|AF370146_1 unknown protein [Arabidopsis thaliana] gi|16323400|gb|AAL15194.1| unknown protein [Arabidopsis thaliana] gi|33413451|gb|AAM18187.1| tubby-like protein 7 [Arabidopsis thaliana] gi|332194803|gb|AEE32924.1| Tubby-like F-box protein 7 [Arabidopsis thaliana]

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 142/193 (73%), Gaps = 13/193 (6%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 1   MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 47

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 48  LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 107

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA D
Sbjct: 108 PGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADD 167

Query: 181 LSQGSNAYVGKLR 193
            SQGSNAYVGKLR
Sbjct: 168 FSQGSNAYVGKLR 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452139|ref|XP_003596346.1| Tubby-like F-box protein [Medicago truncatula] gi|87241115|gb|ABD32973.1| Tubby; Cyclin-like F-box [Medicago truncatula] gi|355485394|gb|AES66597.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 144/192 (75%), Gaps = 15/192 (7%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSL     SR+ S+SF E    S +T    ADD           D+G  +A  +  W+ +
Sbjct: 1   MSLMKVFRSRKYSKSFKEVQ--SIDT---VADDR---------RDAGGESADGT-DWSTM 45

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LP+LL EII+RV+  E+ WPHRQNVVACACVCKRWR+IT++IVKSP  +G ITFPSCLKQ
Sbjct: 46  LPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVKSPQRNGTITFPSCLKQ 105

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+ PH CLI+R+KKTSTFYLYLALT SFS+KGKFLLAARRYR G H+EY ISLDA D
Sbjct: 106 PGPRDLPHHCLIKRSKKTSTFYLYLALTSSFSDKGKFLLAARRYRCGTHTEYAISLDADD 165

Query: 181 LSQGSNAYVGKL 192
           LSQGSNAYVGKL
Sbjct: 166 LSQGSNAYVGKL 177

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7769867|gb|AAF69545.1|AC008007_20 F12M16.22 [Arabidopsis thaliana]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 142/193 (73%), Gaps = 13/193 (6%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 168 MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 214

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 215 LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 274

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA D
Sbjct: 275 PGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADD 334

Query: 181 LSQGSNAYVGKLR 193
            SQGSNAYVGKLR
Sbjct: 335 FSQGSNAYVGKLR 347

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438923|ref|XP_004137237.1| PREDICTED: tubby-like F-box protein 7-like [Cucumis sativus] gi|449483168|ref|XP_004156511.1| PREDICTED: tubby-like F-box protein 7-like [Cucumis sativus]

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 109/145 (75%), Positives = 127/145 (87%)

Query: 48  AAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPF 107
           + A+H   SW+ +LPELL EII+RVE  E  WP+RQNVV+CACVCKRWR+ITK++ ++  
Sbjct: 42  SGASHPQSSWSSMLPELLREIIQRVEAEEHGWPNRQNVVSCACVCKRWRDITKEVARATP 101

Query: 108 LSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRG 167
            SGKITFPSCLKQPGP + PHQCLI+RNKKTSTF+LYLALTPSF++KGKFLLAARRYR G
Sbjct: 102 HSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPSFTDKGKFLLAARRYRHG 161

Query: 168 AHSEYIISLDAGDLSQGSNAYVGKL 192
           AH+EYIISLDA DLSQGSNAYVGKL
Sbjct: 162 AHTEYIISLDAEDLSQGSNAYVGKL 186

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.694	0.353	0.783	2e-57
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.694	0.294	0.548	3e-37
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.694	0.324	0.533	1.5e-35
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.694	0.301	0.533	1.9e-35
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.689	0.310	0.525	4e-35
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.694	0.340	0.567	5.1e-35
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.689	0.35	0.540	9.5e-34
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.678	0.336	0.507	4.9e-30
RGD|1310551	486	Tulp2 "tubby-like protein 2" [	0.378	0.150	0.421	5.4e-08
MGI|MGI:2651573	505	Tub "tubby candidate gene" [Mu	0.383	0.146	0.389	6.9e-07

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 105/134 (78%), Positives = 118/134 (88%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             +LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK
Sbjct:    47 MLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLK 106

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAG 179
              PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA 
Sbjct:   107 LPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDAD 166

Query:   180 DLSQGSNAYVGKLR 193
             D SQGSNAYVGKLR
Sbjct:   167 DFSQGSNAYVGKLR 180

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 74/135 (54%), Positives = 103/135 (76%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP  LK
Sbjct:    60 LPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLK 119

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDA 178
             QPGPR+   QC I+R+K   T++LYL L+P+   E GKFLL+A+R RR  ++EY+IS+ A
Sbjct:   120 QPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHA 179

Query:   179 GDLSQGSNAYVGKLR 193
               +S+ SN Y+GK+R
Sbjct:   180 DTISRSSNTYIGKIR 194

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 72/135 (53%), Positives = 99/135 (73%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL +II+R+E+ +  WP R++VVACA VCK WRE+TK++VK P LSG ITFP  L+
Sbjct:    72 LPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLR 131

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDA 178
             QPGPR+ P QC I+R + T  + LYL L+P+ S +K K LL+A+R RR   +E+++SL  
Sbjct:   132 QPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSG 191

Query:   179 GDLSQGSNAYVGKLR 193
              D S+ S+ Y+GKLR
Sbjct:   192 NDFSRSSSNYIGKLR 206

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 72/135 (53%), Positives = 102/135 (75%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL ++I+R+E +E +WP R++VVACA VC+ WR + ++IV  P + GK+TFP  LK
Sbjct:    62 LPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLK 121

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDA 178
             QPGPR+   QC I+R+K   TF+L+L L+P+   E GKFLL+A+R RR   +EYIIS+DA
Sbjct:   122 QPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDA 181

Query:   179 GDLSQGSNAYVGKLR 193
              ++S+ SN+Y+GKLR
Sbjct:   182 DNISRSSNSYLGKLR 196

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 71/135 (52%), Positives = 103/135 (76%)

Query:    61 LPE-LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             LP  LL +++++++ +E +WP R+ VVACA VCK WR + KDIVKSP  SGK+TFP  LK
Sbjct:    58 LPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLK 117

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDA 178
             QPGPR+   QC I+R+K   T++LYL+L+P+   E GKFLL+A+R RR  ++EY+IS+DA
Sbjct:   118 QPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDA 177

Query:   179 GDLSQGSNAYVGKLR 193
              ++S+ S+ Y+GKL+
Sbjct:   178 DNISRSSSTYIGKLK 192

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 76/134 (56%), Positives = 95/134 (70%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL +II RVE +E +WP R  VV+CA VCK WR IT +IV+ P   GK+TFP  LK
Sbjct:    51 LPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLK 110

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAG 179
             QPGPR+ P QC I+RN+ T+T+ LY  L PS +E  K LLAARR RR   +++IISL A 
Sbjct:   111 QPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISLSAK 170

Query:   180 DLSQGSNAYVGKLR 193
             + S+ S+ YVGKLR
Sbjct:   171 NFSRSSSTYVGKLR 184

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 73/135 (54%), Positives = 98/135 (72%)

Query:    61 LPE-LLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCL 118
             LPE LL EI+ RVET +   WP R+NVVACA VC+ WR +TK+IV  P  S K+TFP  L
Sbjct:    36 LPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISL 95

Query:   119 KQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDA 178
             KQ GPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA + +R   ++YIISL +
Sbjct:    96 KQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRS 155

Query:   179 GDLSQGSNAYVGKLR 193
              D+S+ SNAY+G++R
Sbjct:   156 DDISKRSNAYLGRMR 170

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 67/132 (50%), Positives = 92/132 (69%)

Query:    63 ELLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQP 121
             ELL EI+ RVE  +   WP R++VVACA VC+ WR +  + V  P +S K+TFP  LKQP
Sbjct:    45 ELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQP 104

Query:   122 GPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDL 181
             GPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA + +    ++YIISL + D+
Sbjct:   105 GPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDM 164

Query:   182 SQGSNAYVGKLR 193
             S+ S AYVGK+R
Sbjct:   165 SRRSQAYVGKVR 176

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

RGD|1310551 Tulp2 "tubby-like protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 35/83 (42%), Positives = 45/83 (54%)

Query:   121 PGPREFPHQCLIRRNKKT------STFYLYL----ALTPSFSEKGKFLLAARRYRRGAHS 170
             P PRE   QC I RNK         ++YLYL     +    S  G FLLA R+ +R   S
Sbjct:   232 PAPREHMVQCRIVRNKHGVDKGMFPSYYLYLEAEDGVAVRSSPLGHFLLAGRKRKRSKTS 291

Query:   171 EYIISLDAGDLSQGSNAYVGKLR 193
              Y+ISLD  D+S+  N +VGK+R
Sbjct:   292 NYLISLDPKDMSRNGNNFVGKVR 314

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGK--FLLAARRYRRGAHSEYIISL 176
             +P P+    +C I R+KK     +Y         E GK  FLLA R+ ++   S Y+IS+
Sbjct:   256 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 315

Query:   177 DAGDLSQGSNAYVGKLR 193
             D  DLS+G ++Y+GKLR
Sbjct:   316 DPTDLSRGGDSYIGKLR 332

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007602 "phototransduction" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IMP

GO:0009584 "detection of visible light" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IMP

GO:0050766 "positive regulation of phagocytosis" evidence=ISO

GO:0050896 "response to stimulus" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam01167	243	pfam01167, Tub, Tub family	1e-20

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score = 85.5 bits (212), Expect = 1e-20
 Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKG--KFLLAARRYRRGAHSEYIISLD 177
           P PR    QC I R+K    + L+         E G  KFLLAAR+ +R   S Y+ISLD
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 178 AGDLSQGSNAYVGKLR 193
             DLS+  + Y+GKLR
Sbjct: 61  PTDLSRSGDGYIGKLR 76

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	99.92
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.31
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.07
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	97.99
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.9
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	89.0

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=3.2e-53  Score=382.03  Aligned_cols=139  Identities=54%  Similarity=0.947  Sum_probs=136.0

Q ss_pred             CCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhhhcCCCccccccccccccCCCCCCCceeEEEEe
Q 029419           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR  134 (193)
Q Consensus        55 ~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~keiv~~Pe~~Gkitfp~~LkqPgPrd~~iQCfIkR  134 (193)
                      +.|++||||||+|||+|+|++|+.||+|++||+||+||+.||+++++||++|+.+|++|||+||+||||+|.++||||+|
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R  122 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR  122 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeecccCCCCC--CCCCeEEEccccccCCCCccEEEeccCCCCCCCCCcceeecC
Q 029419          135 NKKTSTFYLYLALTPSF--SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR  193 (193)
Q Consensus       135 dK~g~tY~LyL~l~~~~--~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~yVGKLR  193 (193)
                      ||+|.+|+||++|.+.+  .|++||||||||+|++||+|||||+|++||||++++||||||
T Consensus       123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklR  183 (355)
T KOG2502|consen  123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLR  183 (355)
T ss_pred             ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeee
Confidence            99999999999998865  378999999999999999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=99.92  E-value=1.3e-26  Score=199.60  Aligned_cols=73  Identities=58%  Similarity=0.843  Sum_probs=58.6

Q ss_pred             CCCCCCceeEEEEecCCCCeeeecccCCCCC-CCCCeEEEccccccCCCCccEEEeccCCCCCCCCCcceeecC
Q 029419          121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLR  193 (193)
Q Consensus       121 PgPrd~~iQCfIkRdK~g~tY~LyL~l~~~~-~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~yVGKLR  193 (193)
                      |||+|++|||||+|||+|.+|+||+.+...+ .++|+|||||||+++++|||||||+|++||||++++||||||
T Consensus         1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLr   74 (246)
T PF01167_consen    1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLR   74 (246)
T ss_dssp             B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEE
T ss_pred             CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeec
Confidence            8999999999999999997766666665544 389999999999999999999999999999999999999997

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.31  E-value=1.7e-07  Score=60.92  Aligned_cols=36  Identities=33%  Similarity=0.633  Sum_probs=30.8

Q ss_pred             CCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (193)
Q Consensus        57 Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k  100 (193)
                      |..||+|++.+|+..+       |.. ++..|+.|||.|+.++.
T Consensus         1 i~~LP~Eil~~If~~L-------~~~-dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYL-------DPR-DLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS--------HH-HHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcC-------CHH-HHHHHHHHHHHHHHHHC
Confidence            7899999999999998       333 89999999999999984

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.07  E-value=5.4e-07  Score=57.98  Aligned_cols=39  Identities=26%  Similarity=0.520  Sum_probs=32.0

Q ss_pred             CCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhh
Q 029419           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI  102 (193)
Q Consensus        56 ~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~kei  102 (193)
                      .|.+||+|++.+|+.+++.        +++++|+.||+.|+.++++.
T Consensus         2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence            4789999999999999954        46999999999999998765

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=97.99  E-value=3.1e-06  Score=78.12  Aligned_cols=41  Identities=24%  Similarity=0.528  Sum_probs=38.0

Q ss_pred             CCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhh
Q 029419           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI  102 (193)
Q Consensus        55 ~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~kei  102 (193)
                      ..|++||+|||..|..||       |++-+++--++||++||..+...
T Consensus         2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence            469999999999999999       99999999999999999987753

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.90  E-value=2.8e-06  Score=52.15  Aligned_cols=34  Identities=29%  Similarity=0.655  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419           60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (193)
Q Consensus        60 lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke  101 (193)
                      ||+|++.+|+.++       +. +++.+|+.||++|+.++.+
T Consensus         1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence            7999999999999       55 6899999999999998864

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.46  E-value=0.03  Score=52.16  Aligned_cols=96  Identities=22%  Similarity=0.305  Sum_probs=60.4

Q ss_pred             CCCCCC---CCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHhhh-------cCCCcc-----cccc----c
Q 029419           54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV-------KSPFLS-----GKIT----F  114 (193)
Q Consensus        54 ~~~Wa~---lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~keiv-------~~Pe~~-----Gkit----f  114 (193)
                      |+.|-+   ||+|+|..||++|-.+.-   .-++.+.||+|||.|+-.+++=-       |.=..+     +++.    +
T Consensus       101 qp~~~~~~~LPdEvLm~I~~~vv~~~~---d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~  177 (366)
T KOG2997|consen  101 QPELISISVLPDEVLMRIFRWVVSSLL---DLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY  177 (366)
T ss_pred             chhhhhhhhCCHHHHHHHHHHHHhhhc---chhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence            677766   999999999999953321   12577899999999877665310       100111     1111    1


Q ss_pred             ----cccccCCCCC-CCceeEEEEecC---CC-------------CeeeecccCCCCCCCCCeEEE
Q 029419          115 ----PSCLKQPGPR-EFPHQCLIRRNK---KT-------------STFYLYLALTPSFSEKGKFLL  159 (193)
Q Consensus       115 ----p~~LkqPgPr-d~~iQCfIkRdK---~g-------------~tY~LyL~l~~~~~e~gKFLL  159 (193)
                          .-||..|--+ ||   |+|-++.   -|             -+||-|+.+-    .+|+||+
T Consensus       178 ~SWR~Mfl~RpRvrFdG---~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiRFy----P~G~~l~  236 (366)
T KOG2997|consen  178 TSWREMFLERPRVRFDG---VYISKTTYIRQGENSLDSFYRPVHLVEYYRYIRFY----PDGHVLM  236 (366)
T ss_pred             hHHHHHHhhCcceeecc---eEEEEEeEeecCchhhhhhcCcceeeEEEEEEEec----CCCcEEE
Confidence                1267777654 45   7776662   23             2899999854    5788776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.00  E-value=0.12  Score=48.72  Aligned_cols=62  Identities=26%  Similarity=0.454  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh--hhcCCCccccccccccccCCCCCC
Q 029419           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD--IVKSPFLSGKITFPSCLKQPGPRE  125 (193)
Q Consensus        56 ~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke--iv~~Pe~~Gkitfp~~LkqPgPrd  125 (193)
                      .|-.||.|+|.+|+.-|        +-++...-++||++|.++..+  +-..-..-|+--=|+.+-+=..|+
T Consensus        97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rg  160 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRG  160 (419)
T ss_pred             CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCC
Confidence            49999999999999876        567889999999999998765  233334445544555555544454

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		7e-08
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		8e-08
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		8e-08
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		7e-06
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		8e-06

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 13/82 (15%)
Query: 120 QPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGK--FLLAARRYRRGAHSE 171
           +P P+    +C I R+KK        T++L+L       E GK  FLLA R+ ++   S 
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 78
Query: 172 YIISLDAGDLSQGSNAYVGKLR 193
           Y+IS+D  DLS+G ++Y+GKLR
Sbjct: 79  YLISVDPTDLSRGGDSYIGKLR 100

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 13/82 (15%)
Query: 120 QPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGK--FLLAARRYRRGAHSE 171
           +P P+    +C I R+KK        T++L+L       E GK  FLLA R+ ++   S 
Sbjct: 16  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 172 YIISLDAGDLSQGSNAYVGKLR 193
           Y+IS+D  DLS+G ++Y+GKLR
Sbjct: 71  YLISVDPTDLSRGGDSYIGKLR 92

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 13/82 (15%)
Query: 120 QPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGK--FLLAARRYRRGAHSE 171
           +P P+    +C I R+KK        T++L+L       E GK  FLLA R+ ++   S 
Sbjct: 16  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 172 YIISLDAGDLSQGSNAYVGKLR 193
           Y+IS+D  DLS+G ++Y+GKLR
Sbjct: 71  YLISVDPTDLSRGGDSYIGKLR 92

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-----SEKGKFLLAARRYRRGAHSEYII 174
           +P P+    +C + R+KK     +Y    PS+     +EK  FLLA R+ +R   + Y+I
Sbjct: 31  RPAPQGRTVRCRLTRDKKGMDRGMY----PSYFLHLDTEKKVFLLAGRKRKRSKTANYLI 86
Query: 175 SLDAGDLSQGSNAYVGKLR 193
           S+D  +LS+G   ++GKLR
Sbjct: 87  SIDPTNLSRGGENFIGKLR 105

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-----SEKGKFLLAARRYRRGAHSEYII 174
           +P P+    +C + R+KK     +Y    PS+     +EK  FLLA R+ +R   + Y+I
Sbjct: 7   RPAPQGRTVRCRLTRDKKGMDRGMY----PSYFLHLDTEKKVFLLAGRKRKRSKTANYLI 62
Query: 175 SLDAGDLSQGSNAYVGKLR 193
           S+D  +LS+G   ++GKLR
Sbjct: 63  SIDPTNLSRGGENFIGKLR 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	2e-23
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	5e-22
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score = 92.1 bits (228), Expect = 2e-23
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 118 LKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGK-FLLAARRYRRGAHSEYIISL 176
           + +P P+    +C + R+KK     +Y +       + K FLLA R+ +R   + Y+IS+
Sbjct: 5   VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 64

Query: 177 DAGDLSQGSNAYVGKLR 193
           D  +LS+G   ++GKLR
Sbjct: 65  DPTNLSRGGENFIGKLR 81

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score = 89.5 bits (221), Expect = 5e-22
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 118 LKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGK-FLLAARRYRRGAHSEYIISL 176
           + +P P+    +C + R+KK     +Y +       + K FLLA R+ +R   + Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 177 DAGDLSQGSNAYVGKLR 193
           D  +LS+G   ++GKLR
Sbjct: 89  DPTNLSRGGENFIGKLR 105

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 13  SRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRV 72
             S     ++S E     A     +             A +    A L   LL  ++  +
Sbjct: 7   PESVSHPEEASPEEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAEL 66

Query: 73  ETTEDSWPHRQNVVACACVCKRWREITKD 101
                  P  + V AC  VC RW+E+   
Sbjct: 67  -------PATELVQACRLVCLRWKELVDG 88

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 7/54 (12%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 56  SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLS 109
           S    + +++ +++  +   +D         + + VC+RW +I  +  +   ++
Sbjct: 12  SCVATVDDVIEQVMTYITDPKD-------RDSASLVCRRWFKIDSETREHVTMA 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 25/172 (14%), Positives = 45/172 (26%), Gaps = 57/172 (33%)

Query: 56  SWAGL----LPE-----------LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100
            +       LP            ++ E IR    T D+W H          C +   I +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN--------CDKLTTIIE 360

Query: 101 DIVK--SP------FLSGKITFPSCLKQP--------------GPREFPHQC----LIRR 134
             +    P      F    + FP     P                    ++     L+ +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 135 NKKTSTFY---LYLALTPSFSEKG---KFLLAARRYRRGAHSEYIISLDAGD 180
             K ST     +YL L      +    + ++      +   S+  +     D
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD-LIPPYLD 470

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	99.95
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	99.94
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.77
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.54
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.79
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.07
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.07
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.0

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=99.95  E-value=2.7e-28  Score=209.52  Aligned_cols=74  Identities=36%  Similarity=0.721  Sum_probs=62.3

Q ss_pred             cccccCCCCCCCceeEEEEecCCC------CeeeecccCCCCCCCCCeEEEccccccCCCCccEEEeccCCCCCCCCCcc
Q 029419          115 PSCLKQPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAY  188 (193)
Q Consensus       115 p~~LkqPgPrd~~iQCfIkRdK~g------~tY~LyL~l~~~~~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~y  188 (193)
                      ..||+||||+|++|||+|+|||+|      |+||||++     .++++|||||||+++++|||||||+|++||||++++|
T Consensus         2 ~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~y   76 (246)
T 3c5n_A            2 REFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENF   76 (246)
T ss_dssp             TTGGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CE
T ss_pred             hhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceE
Confidence            479999999999999999999998      79999997     4677899999999999999999999999999999999


Q ss_pred             eeecC
Q 029419          189 VGKLR  193 (193)
Q Consensus       189 VGKLR  193 (193)
                      |||||
T Consensus        77 vGKLr   81 (246)
T 3c5n_A           77 IGKLR   81 (246)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=99.94  E-value=8e-28  Score=209.78  Aligned_cols=75  Identities=36%  Similarity=0.694  Sum_probs=64.0

Q ss_pred             ccccccCCCCCCCceeEEEEecCCC------CeeeecccCCCCCCCCCeEEEccccccCCCCccEEEeccCCCCCCCCCc
Q 029419          114 FPSCLKQPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNA  187 (193)
Q Consensus       114 fp~~LkqPgPrd~~iQCfIkRdK~g------~tY~LyL~l~~~~~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~  187 (193)
                      +..||+||+|+|++|||+|+|||+|      |+|||||+     .++++|||||||+|+++|+||+||+|++||||++++
T Consensus        25 ~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~   99 (276)
T 2fim_A           25 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGEN   99 (276)
T ss_dssp             CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------C
T ss_pred             HHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCce
Confidence            6689999999999999999999998      79999997     478899999999999999999999999999999999


Q ss_pred             ceeecC
Q 029419          188 YVGKLR  193 (193)
Q Consensus       188 yVGKLR  193 (193)
                      ||||||
T Consensus       100 yvGKLr  105 (276)
T 2fim_A          100 FIGKLR  105 (276)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999997

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.56  E-value=1.7e-08  Score=65.81  Aligned_cols=40  Identities=30%  Similarity=0.525  Sum_probs=33.1

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (193)
Q Consensus        53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k  100 (193)
                      ++..|++||+|+|..|+.+|       |. ++++.|+.|||+|+.++.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L-------~~-~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTS-------CG-GGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhC
Confidence            45679999999999999999       43 689999999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.77  E-value=6.6e-06  Score=66.96  Aligned_cols=40  Identities=30%  Similarity=0.519  Sum_probs=34.4

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (193)
Q Consensus        53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k  100 (193)
                      .+..|.+||+|+|..|+..+       +.+ +++.|+.|||+|++++.
T Consensus         5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred             ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence            46789999999999999999       444 88999999999999984

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.67  E-value=1.3e-05  Score=70.38  Aligned_cols=40  Identities=33%  Similarity=0.628  Sum_probs=35.1

Q ss_pred             CCCCCCCCHHHHHHHHhhhhcccCCCCccccee-eecccchhHHHHHHh
Q 029419           54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV-ACACVCKRWREITKD  101 (193)
Q Consensus        54 ~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vv-aca~VCr~WR~i~ke  101 (193)
                      ......||+|||.+|+.+|       |++ +++ .|++|||+||.++.+
T Consensus        48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~~   88 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVDG   88 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHTS
T ss_pred             ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhcC
Confidence            3467899999999999999       875 788 999999999999764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.54  E-value=1.6e-05  Score=69.24  Aligned_cols=42  Identities=19%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (193)
Q Consensus        53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke  101 (193)
                      +...|+.||+|+|..|+.+|       |..+++++|+.|||+|+++...
T Consensus         2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~   43 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW   43 (594)
T ss_dssp             --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence            45689999999999999999       7678999999999999999433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.79  E-value=0.00036  Score=58.19  Aligned_cols=41  Identities=20%  Similarity=0.335  Sum_probs=35.0

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (193)
Q Consensus        53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke  101 (193)
                      ...-.+.||+||+..|+..|       + -++++.|+.|||+|+.++.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l-------~-~~~l~~~~~v~~~~~~~~~~   55 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFL-------E-PKDLLQAAQTCRYWRILAED   55 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTS-------C-HHHHHHHTTSCHHHHHHHTC
T ss_pred             cCChhHHCCHHHHHHHHHhC-------C-HHHHHHHHHHhHHHHhhcCc
Confidence            45668999999999999999       3 25799999999999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.65  E-value=0.00038  Score=57.85  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (193)
Q Consensus        53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke  101 (193)
                      +..-.+.||+|++..|+..|       |. ++++.|+.|||.|+.++.+
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence            44557889999999999999       54 4899999999999998865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.07  E-value=0.0014  Score=57.22  Aligned_cols=37  Identities=14%  Similarity=0.474  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (193)
Q Consensus        57 Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k  100 (193)
                      ..+||+|+|..|+..|       +..+++++|+.|||+|+.+..
T Consensus        13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~   49 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS   49 (592)
T ss_dssp             CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence            4589999999999999       556789999999999999853

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.07  E-value=0.0011  Score=55.42  Aligned_cols=40  Identities=23%  Similarity=0.482  Sum_probs=33.1

Q ss_pred             CCCCCCCCHH----HHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419           54 SGSWAGLLPE----LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (193)
Q Consensus        54 ~~~Wa~lPpE----LL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke  101 (193)
                      ..--+.||+|    |+..|+..|+.        +++..|+.|||+|+.++.+
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~   51 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence            3345679999    99999999943        5889999999999988854

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.00  E-value=0.00078  Score=60.13  Aligned_cols=38  Identities=13%  Similarity=0.228  Sum_probs=33.8

Q ss_pred             CCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (193)
Q Consensus        56 ~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke  101 (193)
                      -|.+||.|++..|+.-|       ++ +++..|+.|||.||.++.+
T Consensus         4 ~l~~LP~ei~l~IlsfL-------~p-~DL~~l~~vcr~Wr~la~D   41 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFL-------SP-HDLCQLGSTNHYWNETVRD   41 (312)
T ss_dssp             HHHHSCHHHHHHHHHTS-------CH-HHHHHHHTTCHHHHHHHTC
T ss_pred             hhHhCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHhcc
Confidence            36789999999999999       44 4799999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	1e-24
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-04

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.0 bits (236), Expect = 1e-24
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 118 LKQPGPREFPHQCLIRRNKKTST---FYLYLALTPSFSEKGKFLLAARRYRRGAHSEYII 174
             +P P+    +C I R+KK      F  Y         K  FLLA R+ ++   S Y+I
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 175 SLDAGDLSQGSNAYVGKLR 193
           S+D  DLS+G ++Y+GKLR
Sbjct: 74  SVDPTDLSRGGDSYIGKLR 92

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 3e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 8/45 (17%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101
           W  L  ELL  I   +   E        ++  + VCKRW  +  D
Sbjct: 1   WDSLPDELLLGIFSCLCLPE--------LLKVSGVCKRWYRLASD 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	99.92
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.94
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.72
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.98

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=6.5e-27  Score=201.18  Aligned_cols=77  Identities=39%  Similarity=0.702  Sum_probs=69.2

Q ss_pred             ccccccCCCCCCCceeEEEEecCCCC------eeeecccCCCCCCCCCeEEEccccccCCCCccEEEeccCCCCCCCCCc
Q 029419          114 FPSCLKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNA  187 (193)
Q Consensus       114 fp~~LkqPgPrd~~iQCfIkRdK~g~------tY~LyL~l~~~~~e~gKFLLAARKrkrs~tSnYiISld~~DlSR~S~~  187 (193)
                      +..||+||||+|++|||+|+|||+|.      +|+|||+..   .++++|||||||++++|++|||||+|++||||+|++
T Consensus        10 ~~~Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~---~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~   86 (265)
T d1c8za_          10 LEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE---DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDS   86 (265)
T ss_dssp             HHHHHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT---TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCC
T ss_pred             HHHHhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC---CCceeEEEEEeeecCCCcceEEEEccHHHhcccccc
Confidence            67899999999999999999999874      677777632   245579999999999999999999999999999999


Q ss_pred             ceeecC
Q 029419          188 YVGKLR  193 (193)
Q Consensus       188 yVGKLR  193 (193)
                      ||||||
T Consensus        87 yvGKlr   92 (265)
T d1c8za_          87 YIGKLR   92 (265)
T ss_dssp             CSEEEE
T ss_pred             eeEEee
Confidence            999997

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=7.6e-09  Score=64.60  Aligned_cols=36  Identities=31%  Similarity=0.586  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (193)
Q Consensus        57 Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k  100 (193)
                      |.+||+|++..|+..|       |. ++++.|+.|||+|++++.
T Consensus         1 f~~LP~eil~~If~~L-------~~-~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-------CG-GGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhC
Confidence            8899999999999999       54 489999999999999875

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=8.4e-07  Score=62.00  Aligned_cols=41  Identities=20%  Similarity=0.333  Sum_probs=34.9

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (193)
Q Consensus        53 ~~~~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke  101 (193)
                      +..-=+.||+|++..|+..|       +. +++++|++|||+|++++.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~L-------d~-~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFL-------EP-KDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTS-------CH-HHHHHHTTSCHHHHHHHTC
T ss_pred             ccCChhhCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHHCC
Confidence            34456779999999999999       44 5999999999999999865

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=2e-06  Score=60.66  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             CCCCCCHHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHH
Q 029419           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (193)
Q Consensus        56 ~Wa~lPpELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~k  100 (193)
                      -.++||+||+..|+..|       +. ++++.|+.|||+|+.++.
T Consensus         5 ~~~~LP~Ell~~I~s~L-------d~-~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           5 LITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             HHHHSCHHHHHHHHTTS-------CH-HHHHHHTTTCHHHHHHHH
T ss_pred             chhhCCHHHHHHHHHCC-------CH-HHHHHHHHHHHHHHHHHH
Confidence            35679999999999999       44 589999999999999874

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=6.9e-05  Score=53.69  Aligned_cols=36  Identities=25%  Similarity=0.569  Sum_probs=30.8

Q ss_pred             CCCC----HHHHHHHHhhhhcccCCCCcccceeeecccchhHHHHHHh
Q 029419           58 AGLL----PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (193)
Q Consensus        58 a~lP----pELL~dIi~Rve~se~~wP~r~~vvaca~VCr~WR~i~ke  101 (193)
                      ++||    +|++..|+..|+.        +++..|+.|||.|++++.+
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~--------~dL~~~s~Vck~W~~l~~d   51 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence            4566    6999999999943        5899999999999999875