Citrus Sinensis ID: 029421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYYQLTDAVSKH
Secondary Structure (PSIPRED)
cccccccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEcEEEEccEEEcEEEEEEcccccccccccccccccccccEEccEEEcHHHHHHHHHHHHHccccccEEEEEccccccccccHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEcccEcccccEEEEEEEEcccccccEEEEccccccccccccccEEEEcHHHHHHHHHHHHHHcccccEEEEEccccHHcccHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHcccccEEEEEcHHcHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maagagkcflvtgppgvgkTTLIMRVLESLkasnpslkvqgfytgeirqggqrvgfevvtlddrraplasinasspesyrwptvgrykvdvASFEaialpelqvgadtdlfvidevgkmelfsssfFPAVLRILEsnipvlasipapksgrdipavarlrnhpgatiftlspgnrdslkdnIYYQLTDAVSKH
Flexible Loop (DISEMBL)
maagagkcflvtgppgvgKTTLIMRVLESLkasnpslkvQGFYtgeirqggqRVGFEVVTLDdrraplasinasspesyrwptVGRYKVDVASFEAIalpelqvgadTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPgatiftlspgnrdslkdNIYYQLTDAVSKH
Low Complexity Region (SEG)
MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYYQLTDAVSKH
Disordered region (IsUnstruct)
******KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASI*****ESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPA******IPAVARLRNHPGATIFTLS******LKDNIYYQL*******
Disordered Region (DISOPRED)
*****GK**LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYYQLTDAVS**
Disordered Region (DISEMBL)
MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYYQLTDAVSKH
Disordered Region (DISPRO)
****AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYYQLTDAVSK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYYQLTDAVSKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q9BSD7	190	Cancer-related nucleoside	yes	no	0.880	0.894	0.446	5e-32
Q1LZ78	190	Cancer-related nucleoside	yes	no	0.906	0.921	0.446	8e-32
Q9CQA9	190	Cancer-related nucleoside	yes	no	0.880	0.894	0.418	6e-29
A5IL32	179	Nucleoside-triphosphatase	yes	no	0.834	0.899	0.407	5e-26
B1LAB2	174	Nucleoside-triphosphatase	yes	no	0.818	0.908	0.390	3e-25
Q9WXP3	174	Nucleoside-triphosphatase	yes	no	0.818	0.908	0.385	5e-25
A1RYX5	182	Nucleoside-triphosphatase	yes	no	0.911	0.967	0.378	3e-23
Q467J7	174	Nucleoside-triphosphatase	yes	no	0.808	0.896	0.396	1e-21
O67322	178	Nucleoside-triphosphatase	yes	no	0.829	0.898	0.364	2e-21
Q8TKK3	175	Nucleoside-triphosphatase	yes	no	0.829	0.914	0.387	5e-21

>sp|Q9BSD7|NTPCR_HUMAN Cancer-related nucleoside-triphosphatase OS=Homo sapiens GN=NTPCR PE=1 SV=1

 Score =  137 bits (344), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 108/179 (60%), Gaps = 9/179 (5%)

Query: 10  LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
            +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R PL+
Sbjct: 6   FLTGPPGVGKTTLIHKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 63

Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQ-----VGADTDLFVIDEVGKMELFSS 124
            +    P   R   VG+Y VD+ SFE +ALP L+      G    + VIDE+GKMELFS 
Sbjct: 64  RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 123

Query: 125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
            F  AV + L +    +L +IP PK G+ +  V  +RN     +F ++  NR+ L  +I
Sbjct: 124 LFIQAVRQTLSTPGTIILGTIPVPK-GKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 181

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. Hydrolyzes nucleoside diphosphates with lower efficiency.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 5

>sp|Q1LZ78|NTPCR_BOVIN Cancer-related nucleoside-triphosphatase homolog OS=Bos taurus GN=NTPCR PE=2 SV=1

 Score =  136 bits (343), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 113/188 (60%), Gaps = 13/188 (6%)

Query: 10  LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
            +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R PL+
Sbjct: 6   FLTGPPGVGKTTLIQKATEVLKSSG--MPVDGFYTEEVRQGGRRIGFDVVTLSGIRGPLS 63

Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQ-VGAD----TDLFVIDEVGKMELFSS 124
            I +      R   VG+Y VD+ SFE +ALP L+  GA       + VIDEVGKMELFS 
Sbjct: 64  RIGSEPLPGKRECRVGQYVVDLTSFEQLALPVLRNAGASGRPGQSICVIDEVGKMELFSQ 123

Query: 125 SFFPAVLRILESNIP---VLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDN 181
            F  AV ++L  +IP   VL +IP PK G+ +  V  +R      +F+++  NR+ L   
Sbjct: 124 PFIQAVRQVL--SIPGTVVLGTIPVPK-GKPLALVEEIRTRKDVKVFSVTKENRNHLLPE 180

Query: 182 IYYQLTDA 189
           I   +  +
Sbjct: 181 IVTHMQSS 188

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. Hydrolyzes nucleoside diphosphates with lower efficiency.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9CQA9|NTPCR_MOUSE Cancer-related nucleoside-triphosphatase homolog OS=Mus musculus GN=Ntpcr PE=2 SV=1

 Score =  127 bits (318), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 109/179 (60%), Gaps = 9/179 (5%)

Query: 10  LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
            +TGPPGVGKTTLI + +E L++S   L V GFYT E+RQ G+R+GF+VVTL   + PL+
Sbjct: 6   FLTGPPGVGKTTLIQKAIEVLQSSG--LPVDGFYTQEVRQEGKRIGFDVVTLSGAQGPLS 63

Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQ-----VGADTDLFVIDEVGKMELFSS 124
            + +          VG+Y V++ SFE +ALP L+      G    + +IDE+GKMELFS 
Sbjct: 64  RVGSQPLPGKPECRVGQYVVNLDSFEQLALPVLRNAGSSCGPKHRVCIIDEIGKMELFSQ 123

Query: 125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
            F  AV ++L +  I V+ +IP PK G+ +  V  +R      +F ++  NR+SL  +I
Sbjct: 124 PFIQAVRQMLSTPGIIVVGTIPVPK-GKPLALVEEIRKRRDVKVFNVTRDNRNSLLPDI 181

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. Hydrolyzes nucleoside diphosphates with lower efficiency.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|A5IL32|NTPTH_THEP1 Nucleoside-triphosphatase THEP1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=Tpet_0887 PE=3 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 18/179 (10%)

Query: 10  LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
           L+TG PGVGKTTLI ++   L+ +       GFYT EIR+ G+R+GF++VTLD     LA
Sbjct: 4   LITGRPGVGKTTLIKKLSCLLQNAG------GFYTEEIRESGKRIGFKIVTLDGEEGILA 57

Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQVGA--DTDLFVIDEVGKMELFSSSFF 127
             +   P  YR   VG+Y V++   E I +  L+ GA  + +L ++DE+GKMEL SS F 
Sbjct: 58  RTDLPFP--YR---VGKYYVNLKDLEEIGVRSLE-GALREKNLIIVDEIGKMELLSSKFR 111

Query: 128 PAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYYQL 186
             V +I +S   V+A+I         P V R+++  G  +F L+  NRDSL   I Y L
Sbjct: 112 EVVEKIFDSEKDVIATIKKSSD----PFVERIKSRDGVVVFELNEKNRDSLLKEILYVL 166

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|B1LAB2|NTPTH_THESQ Nucleoside-triphosphatase THEP1 OS=Thermotoga sp. (strain RQ2) GN=TRQ2_0909 PE=3 SV=1

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 16/174 (9%)

Query: 10  LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
           L+TG PGVGKTTLI ++   L+ +       GFYT E+R+ G+R+GF+++TLD     LA
Sbjct: 4   LITGRPGVGKTTLIKKLSRLLQNAG------GFYTEEMREDGKRIGFKIITLDGEEGILA 57

Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQVG-ADTDLFVIDEVGKMELFSSSFFP 128
             +  SP  YR   VG+Y V++   E I +  L+    + DL +IDE+GKMEL S  F  
Sbjct: 58  RTDLPSP--YR---VGKYYVNLKDLEEIGVRSLERAFQEKDLIIIDEIGKMELLSRKFRE 112

Query: 129 AVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
            V +I +S   V+A+I         P V +++N     IF L+  NR+SL + I
Sbjct: 113 VVEKIFDSEKDVVATIKKSSD----PFVEKIKNRNDVVIFELNEKNRNSLLNEI 162

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency.

Thermotoga sp. (strain RQ2) (taxid: 126740)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9WXP3|NTPTH_THEMA Nucleoside-triphosphatase THEP1 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0036 PE=3 SV=1

 Score =  114 bits (284), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 16/174 (9%)

Query: 10  LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
           L+TG PGVGKTTLI ++   L+ +       GFYT E+R+G +R+GF+++TLD     LA
Sbjct: 4   LITGRPGVGKTTLIKKLSRLLQNAG------GFYTEEMREGEKRIGFKIITLDGEEGILA 57

Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQVG-ADTDLFVIDEVGKMELFSSSFFP 128
             +  SP  YR   VG+Y V++   E I +  L+    + DL ++DE+GKMEL S  F  
Sbjct: 58  RTDLPSP--YR---VGKYYVNLKDLEEIGVRSLERAFQEKDLIIVDEIGKMELLSRKFRE 112

Query: 129 AVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
            V +I +S   V+A+I         P V +++N     IF L+  NR+SL + I
Sbjct: 113 VVEKIFDSEKDVIATIKKSSD----PFVEKIKNRNDVVIFELNEKNRNSLLNEI 162

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|A1RYX5|NTPTH_THEPD Nucleoside-triphosphatase THEP1 OS=Thermofilum pendens (strain Hrk 5) GN=Tpen_1005 PE=3 SV=1

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 109/193 (56%), Gaps = 17/193 (8%)

Query: 5   AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVV-TLDD 63
           A K FL+TG PG+GKTT +++  E L +    +KV G  T E+R+GG RVGF+V   L  
Sbjct: 2   AAKNFLLTGRPGIGKTTCVVKTAELLVSRG--VKVGGMVTHEVREGGSRVGFKVRDLLTG 59

Query: 64  RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPE-LQVGADTDLFVIDEVGKMELF 122
           R   LA + A +      P VG+Y V V   EA+ +   L+  ++  + VIDE+G MEL+
Sbjct: 60  REGFLAKVGAGA-----GPRVGKYVVHVEELEAVGVGAILRAVSEAQVVVIDEIGPMELY 114

Query: 123 SSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLR---NHPGATIFTLSPGNRDSLK 179
           S SF PAVL+ L+S+ PVLA+I   +S     +  RLR         ++T++  NRD L 
Sbjct: 115 SPSFLPAVLKALDSDKPVLATIHERES-----SSGRLRGILERGDVKLYTVTLQNRDLLP 169

Query: 180 DNIYYQLTDAVSK 192
             +  ++   V++
Sbjct: 170 PQLAREIASLVAR 182

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency.

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q467J7|NTPTH_METBF Nucleoside-triphosphatase THEP1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A3054 PE=3 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 13/169 (7%)

Query: 11  VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DDRRAPLA 69
           VTG PG+GK+T++ +  E L A  P  K+ G  T EIR+ GQR GF ++ L   +   L 
Sbjct: 6   VTGIPGIGKSTVVAKAAEKL-ADQPGFKIGGIQTAEIRKEGQREGFSIMDLATGKTGVLG 64

Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPA 129
           SI  S P       VG+Y V++   E I    L+   D DL VIDEVG MEL S +F  A
Sbjct: 65  SIRESGPR------VGKYHVNLEDLEKIGANALRSAMDCDLIVIDEVGTMELKSEAFVSA 118

Query: 130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSL 178
           V  +LES+ PVLA +    S +    V R+R      +  ++  NRD L
Sbjct: 119 VKVVLESDKPVLAVLHRSSSHQ---LVQRMRRE--FEVLVVNEKNRDGL 162

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency.

Methanosarcina barkeri (strain Fusaro / DSM 804) (taxid: 269797)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|O67322|NTPTH_AQUAE Nucleoside-triphosphatase THEP1 OS=Aquifex aeolicus (strain VF5) GN=aq_1292 PE=1 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 105/184 (57%), Gaps = 24/184 (13%)

Query: 9   FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRA 66
            ++TG PGVGKTTL+ +++E L       +  GF+T E+R  +  +R GF ++T + ++ 
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGK-----RAIGFWTEEVRDPETKKRTGFRIITTEGKKK 57

Query: 67  PLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVG---ADTD---LFVIDEVGKME 120
             +S   +S +      VG Y V+V  FE +A+P L+     A  D   + +IDE+GKME
Sbjct: 58  IFSSKFFTSKK-----LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME 112

Query: 121 LFSSSFFPAVLRILES-NIPVLASIPAPKSGRDI-PAVARLRNHPGATIFTLSPGNRDSL 178
           LFS  F   V +I+   N+ V+A+IP     RD+ P V  +R  PGA +  L+P NRD +
Sbjct: 113 LFSKKFRDLVRQIMHDPNVNVVATIPI----RDVHPLVKEIRRLPGAVLIELTPENRDVI 168

Query: 179 KDNI 182
            ++I
Sbjct: 169 LEDI 172

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency. Does not have kinase activity.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q8TKK3|NTPTH_METAC Nucleoside-triphosphatase THEP1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3402 PE=3 SV=2

 Score =  100 bits (250), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 11  VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DDRRAPLA 69
           VTG PGVGK+T++ +  E L A  P  K+ G  T EIR+ G R GF +  L   +   L+
Sbjct: 6   VTGSPGVGKSTVVAKTAEKL-AEKPGFKIGGIRTAEIRKEGHREGFSIRDLATGKTGILS 64

Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPA 129
            +  S P       +G+Y V++   E I    ++     DL VIDE+G MEL S SF  A
Sbjct: 65  HVKGSGPR------LGKYHVNLDDLERIGANAVRNALACDLVVIDEIGPMELISQSFVSA 118

Query: 130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
           V  +LES+ PVLA +    S R  P   R R   G  + T+  GNRD L + I
Sbjct: 119 VEEVLESDKPVLAVL--HHSSRH-PLAQRFRK--GFEVLTVDKGNRDELPEKI 166

Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency.

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
225431425	191	PREDICTED: cancer-related nucleoside-tri	0.984	0.994	0.780	2e-82
255561419	192	ATP binding protein, putative [Ricinus c	0.989	0.994	0.748	6e-82
351724601	191	uncharacterized protein LOC100527302 [Gl	0.984	0.994	0.785	1e-81
357484157	192	Nucleoside-triphosphatase, putative [Med	0.984	0.989	0.747	7e-79
388519387	192	unknown [Medicago truncatula]	0.984	0.989	0.742	2e-78
326532096	194	predicted protein [Hordeum vulgare subsp	0.968	0.963	0.716	8e-77
218192020	193	hypothetical protein OsI_09852 [Oryza sa	0.994	0.994	0.677	2e-74
414864606	192	TPA: hypothetical protein ZEAMMB73_71579	0.994	1.0	0.666	3e-73
449495119	194	PREDICTED: cancer-related nucleoside-tri	0.989	0.984	0.717	4e-73
357120857	1180	PREDICTED: uncharacterized protein LOC10	0.994	0.162	0.677	9e-73

>gi|225431425|ref|XP_002273009.1| PREDICTED: cancer-related nucleoside-triphosphatase homolog [Vitis vinifera] gi|296088653|emb|CBI37644.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/191 (78%), Positives = 168/191 (87%), Gaps = 1/191 (0%)

Query: 3   AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD 62
           AG GKCFLVTGPPGVGKTTLIMRVLE+LK SNP+LKVQGFYT E+R+  +RVGF+VVTLD
Sbjct: 2   AGPGKCFLVTGPPGVGKTTLIMRVLETLKISNPNLKVQGFYTSEVREASERVGFQVVTLD 61

Query: 63  DRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELF 122
            R+ PLAS + SSPES RWP+VG+Y+VD+ASFEA+ALPELQV  DTDLF+IDEVGKMELF
Sbjct: 62  GRKGPLAS-SISSPESLRWPSVGKYRVDIASFEALALPELQVKEDTDLFIIDEVGKMELF 120

Query: 123 SSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
           SSSFFPAVLR+LESNIPVLASIP PK  RDIP VARLRNHPGATIFTL+ GNRD +K+ I
Sbjct: 121 SSSFFPAVLRVLESNIPVLASIPIPKFSRDIPGVARLRNHPGATIFTLNTGNRDFVKEQI 180

Query: 183 YYQLTDAVSKH 193
           Y QL D + KH
Sbjct: 181 YSQLRDLLQKH 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561419|ref|XP_002521720.1| ATP binding protein, putative [Ricinus communis] gi|223539111|gb|EEF40707.1| ATP binding protein, putative [Ricinus communis]

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 167/191 (87%)

Query: 3   AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD 62
           A  GKC LV+GPPGVGKTTLIMRV ESLK S P+LK+QGFYT EIR+G +RVGFEVVTLD
Sbjct: 2   AAPGKCLLVSGPPGVGKTTLIMRVFESLKISYPNLKIQGFYTSEIREGSERVGFEVVTLD 61

Query: 63  DRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELF 122
            R+APLAS   S+PES+RWPT+G+YKVD+ASFE++ALPELQV  DTDLF+IDEVGKMEL+
Sbjct: 62  GRKAPLASTTISTPESFRWPTIGKYKVDLASFESLALPELQVKEDTDLFIIDEVGKMELY 121

Query: 123 SSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
           SSSFFPAVL++LESNIPVLAS+P PK GRDIP VAR++NHPGATIFTLSP NRD LK+ I
Sbjct: 122 SSSFFPAVLKVLESNIPVLASVPIPKFGRDIPGVARVKNHPGATIFTLSPSNRDVLKEQI 181

Query: 183 YYQLTDAVSKH 193
           Y QL  ++ +H
Sbjct: 182 YSQLVGSLGRH 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724601|ref|NP_001237831.1| uncharacterized protein LOC100527302 [Glycine max] gi|255632039|gb|ACU16372.1| unknown [Glycine max]

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 166/191 (86%), Gaps = 1/191 (0%)

Query: 3   AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD 62
           AG GKCFLVTGPPGVGKTTLIM+V ESLK  NPSLK+QGFYT EIR+ GQRVGFEVVTLD
Sbjct: 2   AGPGKCFLVTGPPGVGKTTLIMKVFESLKV-NPSLKLQGFYTREIRRAGQRVGFEVVTLD 60

Query: 63  DRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELF 122
            R APLASI+ S+PES RWP VG+YKVDVASFE++ALPELQV  DTDLF+IDEVGKMELF
Sbjct: 61  GRTAPLASIDISTPESLRWPNVGKYKVDVASFESLALPELQVKEDTDLFIIDEVGKMELF 120

Query: 123 SSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
           SSSFFPAVLR+LESNIPVLASIP PK GRDIP VARLRNH GAT FTLS  NRD++++ I
Sbjct: 121 SSSFFPAVLRVLESNIPVLASIPVPKFGRDIPEVARLRNHAGATCFTLSVSNRDAVREQI 180

Query: 183 YYQLTDAVSKH 193
             QL D ++KH
Sbjct: 181 RSQLEDMLTKH 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484157|ref|XP_003612365.1| Nucleoside-triphosphatase, putative [Medicago truncatula] gi|355513700|gb|AES95323.1| Nucleoside-triphosphatase, putative [Medicago truncatula]

 Score =  298 bits (763), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 142/190 (74%), Positives = 163/190 (85%)

Query: 4   GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD 63
           G GKCFLVTGPPGVGK+TLIMRV ESLKASNP+LKVQGFYT E+R  G+RVGFEVVTLD 
Sbjct: 3   GTGKCFLVTGPPGVGKSTLIMRVFESLKASNPTLKVQGFYTREVRVAGERVGFEVVTLDG 62

Query: 64  RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFS 123
           R  PLAS N SS ES+RWP VG+YKVDVASFE++AL ELQV  DTDLF+IDEVGKMEL+S
Sbjct: 63  RTCPLASSNFSSQESHRWPNVGKYKVDVASFESLALLELQVREDTDLFIIDEVGKMELYS 122

Query: 124 SSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIY 183
           SSFFPAVL++LESNIP+LASIP PK GRDIPAVARL+NH GAT+FTLS  NRD++++ + 
Sbjct: 123 SSFFPAVLKVLESNIPILASIPVPKFGRDIPAVARLKNHAGATLFTLSVSNRDAVREQMR 182

Query: 184 YQLTDAVSKH 193
             L D + KH
Sbjct: 183 SLLEDLLKKH 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519387|gb|AFK47755.1| unknown [Medicago truncatula]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/190 (74%), Positives = 163/190 (85%)

Query: 4   GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD 63
           G GKCFLVTGPPGVGK+TLIMRV ESLKASNP+LKVQGFYT E+R  G+RVGF+VVTLD 
Sbjct: 3   GTGKCFLVTGPPGVGKSTLIMRVFESLKASNPTLKVQGFYTREVRVAGERVGFDVVTLDG 62

Query: 64  RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFS 123
           R  PLAS N SS ES+RWP VG+YKVDVASFE++AL ELQV  DTDLF+IDEVGKMEL+S
Sbjct: 63  RTCPLASSNFSSQESHRWPNVGKYKVDVASFESLALLELQVREDTDLFIIDEVGKMELYS 122

Query: 124 SSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIY 183
           SSFFPAVL++LESNIP+LASIP PK GRDIPAVARL+NH GAT+FTLS  NRD++++ + 
Sbjct: 123 SSFFPAVLKVLESNIPILASIPVPKFGRDIPAVARLKNHAGATLFTLSVSNRDAVREQMR 182

Query: 184 YQLTDAVSKH 193
             L D + KH
Sbjct: 183 SLLEDLLKKH 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326532096|dbj|BAK01424.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 163/187 (87%)

Query: 1   MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVT 60
           MAA + +C LVTGPPGVGKTTL+MRVLE+L++S+P L V+GFYT E+R+ G+RVGFEVVT
Sbjct: 1   MAAASSRCLLVTGPPGVGKTTLVMRVLETLRSSHPHLAVRGFYTREVRENGERVGFEVVT 60

Query: 61  LDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKME 120
           LD R  PLAS   SSPES RWPTVG+YKVDVAS E++ALPELQV  DTDLF+IDEVGKME
Sbjct: 61  LDGRSGPLASSRISSPESVRWPTVGKYKVDVASLESLALPELQVKEDTDLFIIDEVGKME 120

Query: 121 LFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKD 180
           LFS +FFPAV+R++ESNIPVLA+IP P+ GRDIP VARLRNHPGA +FTLS G+RD++++
Sbjct: 121 LFSPAFFPAVMRVMESNIPVLATIPLPRYGRDIPGVARLRNHPGADVFTLSTGDRDTMRE 180

Query: 181 NIYYQLT 187
           +IY QL+
Sbjct: 181 SIYNQLS 187

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192020|gb|EEC74447.1| hypothetical protein OsI_09852 [Oryza sativa Indica Group] gi|222624141|gb|EEE58273.1| hypothetical protein OsJ_09288 [Oryza sativa Japonica Group]

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 159/192 (82%)

Query: 1   MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVT 60
           MAA   +C LVTGPPGVGKTTL+ RV E+L+ S+P L ++GFYT E+R+ G+RVGFEVVT
Sbjct: 1   MAAAPSRCLLVTGPPGVGKTTLVTRVFETLRESHPHLNIRGFYTREVRESGERVGFEVVT 60

Query: 61  LDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKME 120
           LD R  PLAS   SS ES RWPTVGRYKVD+AS E++ALPELQV  DTDLF+IDEVGKME
Sbjct: 61  LDGRTGPLASSKVSSRESVRWPTVGRYKVDIASLESLALPELQVKDDTDLFIIDEVGKME 120

Query: 121 LFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKD 180
           LFSS+FFPAV+R++ESNIPVLA+IP P+ GRDIP VARLRNHPGA I+TL+ GNRD++++
Sbjct: 121 LFSSAFFPAVMRVIESNIPVLATIPVPRLGRDIPGVARLRNHPGAVIYTLNTGNRDAMRE 180

Query: 181 NIYYQLTDAVSK 192
            +Y  L+  + K
Sbjct: 181 GVYNHLSSLLQK 192

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414864606|tpg|DAA43163.1| TPA: hypothetical protein ZEAMMB73_715792 [Zea mays]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 159/192 (82%)

Query: 1   MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVT 60
           MAA      L+TGPPGVGKTTL+MRV E+L+ S+P+L ++GFYT E+R+GG+R+GFEVVT
Sbjct: 1   MAAVPSGFLLITGPPGVGKTTLVMRVFETLRGSHPNLNIRGFYTREVREGGERIGFEVVT 60

Query: 61  LDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKME 120
           LD R  PL+S   SSPES RWPTVG+YKVDVAS E++A+PELQV  +TDLF+IDEVGKME
Sbjct: 61  LDGRTGPLSSCKVSSPESVRWPTVGKYKVDVASLESLAVPELQVKEETDLFIIDEVGKME 120

Query: 121 LFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKD 180
           LFSS+FFPAV+R++ESNIPVLA+IP P+ GRDIP VARLRNHPGA +FTL  GNRD+++D
Sbjct: 121 LFSSAFFPAVMRVIESNIPVLATIPIPRQGRDIPGVARLRNHPGAAVFTLDTGNRDTMRD 180

Query: 181 NIYYQLTDAVSK 192
            I  QL   + +
Sbjct: 181 TICSQLRSLLQR 192

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495119|ref|XP_004159739.1| PREDICTED: cancer-related nucleoside-triphosphatase-like [Cucumis sativus]

 Score =  279 bits (713), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 160/191 (83%)

Query: 3   AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD 62
            G G+C LVTGPPGVGKTTLI++V E LKAS+P+LK++GFYT EIRQG QRVGFEVVTLD
Sbjct: 2   GGPGRCLLVTGPPGVGKTTLIVKVFEMLKASSPNLKIKGFYTREIRQGSQRVGFEVVTLD 61

Query: 63  DRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELF 122
            R APLAS + SS ES RWPTVGRYKVD+ASFE++ALPELQV  DTDLF+IDEVGKMELF
Sbjct: 62  GRTAPLASTSVSSSESLRWPTVGRYKVDIASFESLALPELQVEKDTDLFIIDEVGKMELF 121

Query: 123 SSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
           SSSFFPAVL++LESN P+LASIP PK GRDIP VARLRNHPGA I TL+P NRD   + I
Sbjct: 122 SSSFFPAVLKVLESNTPLLASIPIPKFGRDIPGVARLRNHPGANILTLNPSNRDEANEQI 181

Query: 183 YYQLTDAVSKH 193
           + ++ + + + 
Sbjct: 182 HGEILNMLEQQ 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357120857|ref|XP_003562141.1| PREDICTED: uncharacterized protein LOC100831212 [Brachypodium distachyon]

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 160/192 (83%)

Query: 1   MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVT 60
           MAA   +C LVTG PGVGKTTL+MRV+E+L+AS+P L ++GF T E+R+ G+RVGFEVVT
Sbjct: 1   MAASPSRCLLVTGAPGVGKTTLVMRVMETLRASHPELTIRGFSTREVRERGERVGFEVVT 60

Query: 61  LDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKME 120
            D R   LAS   SSPES RWPTVG+YKVDVAS E++ALPELQV  DTDL+++DEVGKME
Sbjct: 61  PDGRSGRLASSRISSPESVRWPTVGKYKVDVASLESLALPELQVKEDTDLYIVDEVGKME 120

Query: 121 LFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKD 180
           LFSS+FFPAV+R++ESNIPVLA+IP P+ GRDIP VARLRNHPGA +FTL+ GNRD++++
Sbjct: 121 LFSSAFFPAVVRVIESNIPVLATIPIPRYGRDIPGVARLRNHPGAVVFTLNTGNRDTMRE 180

Query: 181 NIYYQLTDAVSK 192
            IY QL+  V K
Sbjct: 181 GIYDQLSRLVQK 192

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:1006230543	192	AT5G66005 [Arabidopsis thalian	0.937	0.942	0.679	3.7e-64
UNIPROTKB|F1NN66	190	NTPCR "Uncharacterized protein	0.875	0.889	0.449	1.2e-33
ZFIN|ZDB-GENE-040801-200	201	ntpcr "nucleoside-triphosphata	0.886	0.850	0.455	3.7e-32
UNIPROTKB|F1MM52	190	NTPCR "Cancer-related nucleosi	0.875	0.889	0.460	6e-32
UNIPROTKB|Q1LZ78	190	NTPCR "Cancer-related nucleosi	0.865	0.878	0.466	7.7e-32
UNIPROTKB|Q9BSD7	190	NTPCR "Cancer-related nucleosi	0.875	0.889	0.449	7.7e-32
UNIPROTKB|E2R6P4	190	C1orf57 "Uncharacterized prote	0.875	0.889	0.455	9.8e-32
UNIPROTKB|F6XR66	326	NTPCR "Uncharacterized protein	0.844	0.5	0.453	2.3e-30
UNIPROTKB|Q5TDF0	228	NTPCR "Cancer-related nucleosi	0.818	0.692	0.464	2.3e-30
UNIPROTKB|F1RGU8	189	NTPCR "Uncharacterized protein	0.849	0.867	0.441	1.6e-29

TAIR|locus:1006230543 AT5G66005 [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 123/181 (67%), Positives = 152/181 (83%)

Query:     3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD 62
             AG GKC LVTGPPGVGKTTLIMRVL+ ++ SNP+LK+QGFYT E+R+ GQRVGF+VVTLD
Sbjct:     2 AGTGKCLLVTGPPGVGKTTLIMRVLDMMRVSNPNLKIQGFYTQEMRERGQRVGFQVVTLD 61

Query:    63 DRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELF 122
              R + LAS   SS ES  WP+VG+YKVD+ASFE+IALPELQV  DT+LF+IDEVGKME+F
Sbjct:    62 GRTSLLASSIVSSQESMTWPSVGKYKVDIASFESIALPELQVKDDTNLFIIDEVGKMEMF 121

Query:   123 SSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
             S SFFPAVL +L+SN+P+LASIP+PK GR +P VARL+N PG  + +LS  NRD +K++I
Sbjct:   122 SPSFFPAVLNVLDSNVPLLASIPSPKFGRHLPEVARLKNQPGVNVISLSATNRDPMKEHI 181

Query:   183 Y 183
             +
Sbjct:   182 F 182

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

UNIPROTKB|F1NN66 NTPCR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 80/178 (44%), Positives = 119/178 (66%)

Query:    11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS 70
             +TGPPG+GKTTLI +V ++LK+S+  + + GFYT E+++GG+R GF+VVTL  +R PL+ 
Sbjct:     7 LTGPPGIGKTTLIQKVTQALKSSD--VPIDGFYTEEVKEGGRRRGFDVVTLSGKRGPLSR 64

Query:    71 INASSPESYRWPTVGRYKVDVASFEAIALPELQ---VGADT--DLFVIDEVGKMELFSSS 125
             +++ S  S R   VG+Y VDV SFE + LP L+    G+D    + VIDE+GKMELFS +
Sbjct:    65 VSSDSSTSRRECRVGQYVVDVVSFEQLVLPVLRNVNQGSDAAKKICVIDEIGKMELFSQA 124

Query:   126 FFPAVLRILE-SNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
             F  AV ++L  S   VL +IP PK G+ +  V  +R+     +FT+S  NR+++  +I
Sbjct:   125 FIQAVRQMLAGSGTVVLGTIPIPK-GKPLDLVEEIRSRKDVEVFTVSKENRNNILQDI 181

GO:0016740 "transferase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-040801-200 ntpcr "nucleoside-triphosphatase, cancer-related" [Danio rerio (taxid:7955)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 82/180 (45%), Positives = 113/180 (62%)

Query:     7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
             K   +TG PGVGKTTL+ +V ++L      L V GFYT E+R+ G+RVGF+VVT+   R 
Sbjct:    18 KHVFLTGVPGVGKTTLVKKVCDTLSG----LSVSGFYTEEVREHGRRVGFDVVTVSGDRG 73

Query:    67 PLASINASSPESYRWPTVGRYKVDVASFEAIALP---ELQVGADTDLFVIDEVGKMELFS 123
              L+ +++ S    R   VG+Y VD+ SFE++ALP    +Q G+   LFV+DEVGKMELFS
Sbjct:    74 RLSRVSSGSAAGGREYRVGQYVVDLQSFESLALPLFRNMQEGSGKQLFVMDEVGKMELFS 133

Query:   124 SSFFPAVLRILESNI-PVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
               F  AV +ILE +   VL +IP PK G+ +  V  LR+     IF ++  NRD + D+I
Sbjct:   134 QPFIRAVRQILEKSCCSVLGTIPVPK-GKPLALVEELRSRADVKIFMVTKENRDVIFDDI 192

GO:0016740 "transferase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

UNIPROTKB|F1MM52 NTPCR "Cancer-related nucleoside-triphosphatase homolog" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 82/178 (46%), Positives = 109/178 (61%)

Query:    11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS 70
             +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R PL+ 
Sbjct:     7 LTGPPGVGKTTLIQKATEVLKSSG--MPVDGFYTEEVRQGGRRIGFDVVTLSGIRGPLSR 64

Query:    71 INASSPESYRWPTVGRYKVDVASFEAIALPELQ-VGAD----TDLFVIDEVGKMELFSSS 125
             I +      R   VG+Y VD+ SFE +ALP L+  GA       + VIDEVGKMELFS  
Sbjct:    65 IGSEPLPGKRECRVGQYVVDLTSFEQLALPVLRNAGASGRPGQSICVIDEVGKMELFSQP 124

Query:   126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
             F  AV ++L +    VL +IP PK G+ +  V  +R      +F+++  NR+ L   I
Sbjct:   125 FIQAVRQVLSTPGTVVLGTIPVPK-GKPLALVEEIRTRKDVKVFSVTKENRNHLLPEI 181

GO:0005524 "ATP binding" evidence=IEA

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|Q1LZ78 NTPCR "Cancer-related nucleoside-triphosphatase homolog" [Bos taurus (taxid:9913)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 84/180 (46%), Positives = 111/180 (61%)

Query:    11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS 70
             +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R PL+ 
Sbjct:     7 LTGPPGVGKTTLIQKATEVLKSSG--MPVDGFYTEEVRQGGRRIGFDVVTLSGIRGPLSR 64

Query:    71 INASSPESYRWPTVGRYKVDVASFEAIALPELQ-VGAD----TDLFVIDEVGKMELFSSS 125
             I +      R   VG+Y VD+ SFE +ALP L+  GA       + VIDEVGKMELFS  
Sbjct:    65 IGSEPLPGKRECRVGQYVVDLTSFEQLALPVLRNAGASGRPGQSICVIDEVGKMELFSQP 124

Query:   126 FFPAVLRILESNIP---VLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
             F  AV ++L  +IP   VL +IP PK G+ +  V  +R      +F+++  NR+ L   I
Sbjct:   125 FIQAVRQVL--SIPGTVVLGTIPVPK-GKPLALVEEIRTRKDVKVFSVTKENRNHLLPEI 181

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|Q9BSD7 NTPCR "Cancer-related nucleoside-triphosphatase" [Homo sapiens (taxid:9606)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 80/178 (44%), Positives = 108/178 (60%)

Query:    11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS 70
             +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R PL+ 
Sbjct:     7 LTGPPGVGKTTLIHKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 64

Query:    71 INASSPESYRWPTVGRYKVDVASFEAIALPELQ-----VGADTDLFVIDEVGKMELFSSS 125
             +    P   R   VG+Y VD+ SFE +ALP L+      G    + VIDE+GKMELFS  
Sbjct:    65 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 124

Query:   126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
             F  AV + L +    +L +IP PK G+ +  V  +RN     +F ++  NR+ L  +I
Sbjct:   125 FIQAVRQTLSTPGTIILGTIPVPK-GKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 181

GO:0016740 "transferase activity" evidence=IEA

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|E2R6P4 C1orf57 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 81/178 (45%), Positives = 111/178 (62%)

Query:    11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS 70
             +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R  L+ 
Sbjct:     7 LTGPPGVGKTTLIQKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGMRGVLSR 64

Query:    71 INASSPESYRWPTVGRYKVDVASFEAIALPELQ-VGADTD----LFVIDEVGKMELFSSS 125
             I +  P   R   VG+Y VD+ SFE +ALP L+  G+ +     + VIDE+GKMELFS  
Sbjct:    65 IGSEPPPGKRECRVGQYVVDLTSFELLALPVLRNAGSSSGPGQRVCVIDEIGKMELFSQP 124

Query:   126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
             F  AV + L +    VL +IP PK G+ +  V  +RN     +F+++  NR+ L  +I
Sbjct:   125 FIQAVRQTLSTPGTVVLGTIPIPK-GKPLALVEEIRNRNDVQVFSVTKENRNHLLPDI 181

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F6XR66 NTPCR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 78/172 (45%), Positives = 105/172 (61%)

Query:     4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD 63
             G  +   +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL  
Sbjct:    54 GMARHVFLTGPPGVGKTTLIQKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSG 111

Query:    64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ-VGADTD----LFVIDEVGK 118
              R  L+ I +  P   R   VG+Y VD+ SFE +ALP L+  G+ +     + VIDE+GK
Sbjct:   112 MRGVLSRIGSEPPPGKRECRVGQYVVDLTSFELLALPVLRNAGSSSGPGQRVCVIDEIGK 171

Query:   119 MELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFT 169
             MELFS  F  AV + L +    VL +IP PK G+ +  V  +RN     +F+
Sbjct:   172 MELFSQPFIQAVRQTLSTPGTVVLGTIPIPK-GKPLALVEEIRNRNDVQVFS 222

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q5TDF0 NTPCR "Cancer-related nucleoside-triphosphatase" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 78/168 (46%), Positives = 102/168 (60%)

Query:    11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS 70
             +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R PL+ 
Sbjct:     7 LTGPPGVGKTTLIHKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 64

Query:    71 INASSPESYRWPTVGRYKVDVASFEAIALPELQ-----VGADTDLFVIDEVGKMELFSSS 125
             +    P   R   VG+Y VD+ SFE +ALP L+      G    + VIDE+GKMELFS  
Sbjct:    65 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 124

Query:   126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSP 172
             F  AV + L +    +L +IP PK G+ +  V  +RN     +F  SP
Sbjct:   125 FIQAVRQTLSTPGTIILGTIPVPK-GKPLALVEEIRNRKDVKVFN-SP 170

GO:0016740 "transferase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RGU8 NTPCR "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 76/172 (44%), Positives = 107/172 (62%)

Query:    16 GVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASS 75
             GVGKTTLI +  E+LK+S   + V GFYT E+RQGG+R+GF+VVTL   R PL+ I ++ 
Sbjct:    12 GVGKTTLIQKASEALKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGMRGPLSRIGSTP 69

Query:    76 PESYRWPTVGRYKVDVASFEAIALPELQV-GADTD---LFVIDEVGKMELFSSSFFPAVL 131
             P   R   VG+Y VD+ SFE +ALP L+  G+++    + VIDEVGKMELFS  F  AV 
Sbjct:    70 PPGKRECRVGQYVVDLTSFEQLALPVLRTAGSNSPGQRVCVIDEVGKMELFSQPFIQAVR 129

Query:   132 RILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
             + L +    +L +IP PK G+ +  V  +R      + +++  NR+ L   I
Sbjct:   130 QTLSTPGTVILGTIPVPK-GKPLALVEEIRTRNDVKVLSVTKDNRNHLLPEI 180

GO:0019204 "nucleotide phosphatase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BSD7	NTPCR_HUMAN	3, ., 6, ., 1, ., 1, 5	0.4469	0.8808	0.8947	yes	no
A1RYX5	NTPTH_THEPD	3, ., 6, ., 1, ., 1, 5	0.3782	0.9119	0.9670	yes	no
A5IL32	NTPTH_THEP1	3, ., 6, ., 1, ., 1, 5	0.4078	0.8341	0.8994	yes	no
Q8TKK3	NTPTH_METAC	3, ., 6, ., 1, ., 1, 5	0.3872	0.8290	0.9142	yes	no
Q8TH18	NTPTH_PYRFU	3, ., 6, ., 1, ., 1, 5	0.3494	0.8756	0.9184	yes	no
Q9CQA9	NTPCR_MOUSE	3, ., 6, ., 1, ., 1, 5	0.4189	0.8808	0.8947	yes	no
B2A6V4	NTPTH_NATTJ	3, ., 6, ., 1, ., 1, 5	0.3315	0.8704	0.9491	yes	no
B1L726	NTPTH_KORCO	3, ., 6, ., 1, ., 1, 5	0.3370	0.8704	0.8615	yes	no
O27140	NTPTH_METTH	3, ., 6, ., 1, ., 1, 5	0.3048	0.8601	0.9540	yes	no
A2BL86	NTPTH_HYPBU	3, ., 6, ., 1, ., 1, 5	0.3532	0.8911	0.9197	yes	no
Q467J7	NTPTH_METBF	3, ., 6, ., 1, ., 1, 5	0.3964	0.8082	0.8965	yes	no
Q4JCN8	NTPTH_SULAC	3, ., 6, ., 1, ., 1, 5	0.3202	0.8134	0.9127	yes	no
Q1LZ78	NTPCR_BOVIN	3, ., 6, ., 1, ., 1, 5	0.4468	0.9067	0.9210	yes	no
Q58954	NTPTH_METJA	3, ., 6, ., 1, ., 1, 5	0.3240	0.8290	0.9411	yes	no
B1Y9N2	NTPTH_PYRNV	3, ., 6, ., 1, ., 1, 5	0.3333	0.8134	0.8971	yes	no
Q8TX49	NTPTH_METKA	3, ., 6, ., 1, ., 1, 5	0.3513	0.8911	0.9555	yes	no
O58522	NTPTH_PYRHO	3, ., 6, ., 1, ., 1, 5	0.3615	0.8082	0.9069	yes	no
O67322	NTPTH_AQUAE	3, ., 6, ., 1, ., 1, 5	0.3641	0.8290	0.8988	yes	no
Q9UZ81	NTPTH_PYRAB	3, ., 6, ., 1, ., 1, 5	0.3333	0.8756	0.9441	yes	no
B1LAB2	NTPTH_THESQ	3, ., 6, ., 1, ., 1, 5	0.3908	0.8186	0.9080	yes	no
Q9WXP3	NTPTH_THEMA	3, ., 6, ., 1, ., 1, 5	0.3850	0.8186	0.9080	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1.15	0.914
3rd Layer	3.6.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam03266	168	pfam03266, NTPase_1, NTPase	5e-60
PRK13695	174	PRK13695, PRK13695, putative NTPase; Provisional	4e-55
COG1618	179	COG1618, COG1618, Predicted nucleotide kinase [Nuc	5e-44
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	5e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	7e-04
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	0.001
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	0.001
pfam13401	124	pfam13401, AAA_22, AAA domain	0.002
pfam06068	395	pfam06068, TIP49, TIP49 C-terminus	0.002
COG1066	456	COG1066, Sms, Predicted ATP-dependent serine prote	0.002
pfam00910	105	pfam00910, RNA_helicase, RNA helicase	0.002

>gnl|CDD|217465 pfam03266, NTPase_1, NTPase

 Score =  184 bits (470), Expect = 5e-60
 Identities = 78/177 (44%), Positives = 106/177 (59%), Gaps = 12/177 (6%)

Query: 8   CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRA 66
              +TGPPGVGKTTL+ +V+E LK+    +KV GFYT E+R+GG+R+GF++V L    R 
Sbjct: 1   RIFITGPPGVGKTTLVKKVIELLKSEG--VKVGGFYTPEVREGGRRIGFDIVDLASGERG 58

Query: 67  PLASINASSPESYRWPTVGRYKVDVASFEAIALPEL-QVGADTDLFVIDEVGKMELFSSS 125
            LA +   S      P VG+Y V++  FE IALP L +   + DL +IDE+G MEL S  
Sbjct: 59  WLARVGGVSG-----PRVGKYVVNLEEFEEIALPALRRALEEADLIIIDEIGPMELKSPK 113

Query: 126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
           F  A+  +L SN PVLA +       D P V R+R  P   IF ++  NRD+L + I
Sbjct: 114 FREAIEEVLSSNKPVLAVVHRRS---DSPLVERIRRRPDVKIFVVTEENRDALPEEI 167

This domain is found across all species from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue. Length = 168

>gnl|CDD|237475 PRK13695, PRK13695, putative NTPase; Provisional

 Score =  172 bits (438), Expect = 4e-55
 Identities = 72/181 (39%), Positives = 107/181 (59%), Gaps = 12/181 (6%)

Query: 9   FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAP 67
             +TGPPGVGKTTL++++ E LK      KV GFYT E+R+GG+R+GF+++ LD      
Sbjct: 3   IGITGPPGVGKTTLVLKIAELLK--EEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGI 60

Query: 68  LASINASSPESYRWPTVGRYKVDVASFEAIALPELQ-VGADTDLFVIDEVGKMELFSSSF 126
           LA +   S      P VG+Y V++   E I +P L+    + D+ +IDE+GKMEL S  F
Sbjct: 61  LARVGFPSR-----PRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF 115

Query: 127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYYQL 186
             AV  +L+S  PV+A++   +     P V  +++ PG  ++ L+P NRDSL   I  +L
Sbjct: 116 VKAVEEVLDSEKPVIATL--HRRSVH-PFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172

Query: 187 T 187
            
Sbjct: 173 K 173

Length = 174

>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]

 Score =  143 bits (364), Expect = 5e-44
 Identities = 68/180 (37%), Positives = 103/180 (57%), Gaps = 14/180 (7%)

Query: 9   FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAP 67
             +TG PGVGKTTL++++ E L+      KV GF T E+R+GG+R+GF++V L       
Sbjct: 8   IFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGI 65

Query: 68  LASINASSPESYRWPTVGRYKVDVASFEAIALPELQ-VGADTDLFVIDEVGKMELFSSSF 126
           LA +  S P       VG+Y V+V   E IA+P L+    + D+ +IDE+G MEL S  F
Sbjct: 66  LARVGFSRPR------VGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKF 119

Query: 127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYYQL 186
             AV  +L+S  P++A++   +  R  P V R++   G  +F L+P NR+ + + I   L
Sbjct: 120 REAVEEVLKSGKPLIATL--HRRSRH-PLVQRIKKLGGVYVF-LTPENRNRILNEILSVL 175

Length = 179

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 6  GKCFLVTGPPGVGKTTLIMRVLESLKASNPSL 37
           K  L+ GPPG GKTTL   +   L       
Sbjct: 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPF 50

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 28/165 (16%), Positives = 45/165 (27%), Gaps = 33/165 (20%)

Query: 6   GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRR 65
           G+  L+ GPPG GKTTL   +   L                        G  V+ +D   
Sbjct: 2   GEVILIVGPPGSGKTTLARALAREL---------------------GPPGGGVIYIDGED 40

Query: 66  APLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKM------ 119
                ++                       A+AL         D+ ++DE+  +      
Sbjct: 41  ILEEVLDQLLLIIVGGKKASGSGELRL-RLALALARKL---KPDVLILDEITSLLDAEQE 96

Query: 120 --ELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH 162
              L        +L   E N+ V+ +    K         R    
Sbjct: 97  ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRR 141

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  AAGAGKCFLVTGPPGVGKTTLIMRVLESL 30
           +G     L+TGP G GKT+L+  +LE L
Sbjct: 20 RSGGPPSVLLTGPSGTGKTSLLRELLEGL 48

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 11/141 (7%)

Query: 8   CFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
             +V G  GVGKTTL+ R++        P           I    + +  ++       A
Sbjct: 7   KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT----A 62

Query: 67  PLASINASSPESYRWPTVGRYKVDVA----SFEAIA--LPELQVGADTDLFVIDEVGKME 120
                 +  PE YR         D      S E     L EL+  A  D+ ++    K++
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122

Query: 121 LFSSSFFPAVLRILESNIPVL 141
           LF        +    +   VL
Sbjct: 123 LFDEQSSSEEILNQLNREVVL 143

Length = 219

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 8  CFLVTGPPGVGKTTLIMRVLESL 30
            ++TG  G GKTTL+ R+   L
Sbjct: 6  IGVLTGESGSGKTTLLRRLARQL 28

Length = 124

>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 5   AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG--FYTGEIRQGGQRVGFEVVTLD 62
           AG+  L+ GPPG GKT L + + + L    P   + G   Y+ E+++       E +T  
Sbjct: 49  AGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKT------EALTQA 102

Query: 63  DRRA 66
            R+A
Sbjct: 103 FRKA 106

This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395

>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 10  LVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
           L+ G PG+GK+TL+++V   L      L V G
Sbjct: 97  LIGGDPGIGKSTLLLQVAARLAKRGKVLYVSG 128

Length = 456

>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 10 LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQG------GQRVGFEVVTLDD 63
           + GPPG GK+TL   +  +L       K    Y+            GQ     VV +DD
Sbjct: 2  WLYGPPGCGKSTLAKYLARALLKHLGLPKKDSVYSRNPDDDFWDGYTGQ----PVVIIDD 57

This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.98
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.98
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.98
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.98
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.98
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.98
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.98
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.98
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.98
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.98
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.98
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.98
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.98
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.97
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.97
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.97
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.97
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.97
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.97
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.97
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.97
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.97
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.97
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.97
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.97
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.97
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.97
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.97
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.97
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.97
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.97
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.97
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.97
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.97
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.97
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.97
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.97
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.97
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.97
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.97
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.97
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.97
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.97
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.97
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.97
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10908	222	cell division protein FtsE; Provisional	99.97
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.97
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.97
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.97
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.97
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.97
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.97
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.97
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.97
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.97
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.97
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.97
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.97
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.97
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.97
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.97
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.97
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.97
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.97
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.97
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.97
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.97
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.97
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.97
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.97
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.97
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.97
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.97
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.97
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.97
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.97
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.97
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.97
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.97
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.97
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.97
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.97
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.97
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.97
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.96
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.96
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.96
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.96
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.96
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.96
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.96
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.96
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.96
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.96
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.96
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.96
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.96
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.96
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.96
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.96
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.96
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.96
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.96
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.96
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.96
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.96
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.96
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.96
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.96
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.96
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.96
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.96
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.96
cd03246	173	ABCC_Protease_Secretion This family represents the	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.96
COG4181	228	Predicted ABC-type transport system involved in ly	99.96
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.96
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.96
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.96
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.96
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.96
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.96
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.96
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.96
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.96
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.96
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.96
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.96
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.96
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.96
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.96
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.96
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.96
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.96
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.96
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.96
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
COG1123	539	ATPase components of various ABC-type transport sy	99.96
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.96
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.96
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.96
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.96
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.96
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.96
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.96
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.96
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.96
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.96
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.96
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.96
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.96
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.96
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.96
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.95
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.95
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.95
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.95
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.95
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.95
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.95
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.95
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.95
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.95
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.95
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.95
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.95
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.95
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.95
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.95
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.95
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.95
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.95
COG1123	539	ATPase components of various ABC-type transport sy	99.95
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.95
PRK10938	490	putative molybdenum transport ATP-binding protein	99.95
COG4559	259	ABC-type hemin transport system, ATPase component	99.95
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.95
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.95
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.95
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.95
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.95
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.95
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.95
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.95
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.95
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.95
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.95
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.95
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.95
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.95
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.95
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.95
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.94
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.94
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.94
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.94
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.94
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.94
PRK13409	590	putative ATPase RIL; Provisional	99.94
PLN03211	659	ABC transporter G-25; Provisional	99.94
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.94
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.94
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.94
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.94
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.94
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.93
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.93
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.93
PRK10938	490	putative molybdenum transport ATP-binding protein	99.93
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.93
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.93
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.93
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.93
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.93
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.93
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.93
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.93
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.93
COG4988	559	CydD ABC-type transport system involved in cytochr	99.93
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.93
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.93
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.93
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.93
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.93
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.93
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.93
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.93
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.93
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.93
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.93
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.93
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.93
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.93
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.93
COG4987	573	CydC ABC-type transport system involved in cytochr	99.93
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.92
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.92
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.92
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.92
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.92
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.92
PRK13409	590	putative ATPase RIL; Provisional	99.92
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.92
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.92
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.92
PRK11147	635	ABC transporter ATPase component; Reviewed	99.92
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.92
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.92
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.92
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.91
COG4172	534	ABC-type uncharacterized transport system, duplica	99.91
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.91
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.91
PLN03073	718	ABC transporter F family; Provisional	99.91
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.91
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.91
COG4172	534	ABC-type uncharacterized transport system, duplica	99.9
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.9
PLN03140	1470	ABC transporter G family member; Provisional	99.9
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.9
PLN03232	1495	ABC transporter C family member; Provisional	99.9
PLN03130	1622	ABC transporter C family member; Provisional	99.9
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.9
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.9
PRK11147	635	ABC transporter ATPase component; Reviewed	99.9
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.89
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.89
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.89
PLN03140	1470	ABC transporter G family member; Provisional	99.89
COG0488	530	Uup ATPase components of ABC transporters with dup	99.89
PTZ00243	1560	ABC transporter; Provisional	99.89
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.89
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.88
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.87
COG0488	530	Uup ATPase components of ABC transporters with dup	99.86
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.86
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.86
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.86
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.85
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.85
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.85
PLN03073	718	ABC transporter F family; Provisional	99.85
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.84
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.83
PTZ00243	1560	ABC transporter; Provisional	99.82
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.82
PLN03130	1622	ABC transporter C family member; Provisional	99.81
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.81
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.81
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.81
PLN03232	1495	ABC transporter C family member; Provisional	99.81
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.8
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.79
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.79
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.77
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.77
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.77
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.76
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.74
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.74
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	99.74
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.74
PRK13695	174	putative NTPase; Provisional	99.72
COG4178	604	ABC-type uncharacterized transport system, permeas	99.72
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.72
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.7
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.7
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.69
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.67
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	99.67
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.65
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.64
KOG0062	582	consensus ATPase component of ABC transporters wit	99.63
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.63
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.62
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.59
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.58
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.56
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.56
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.56
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.56
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.55
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.52
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.52
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.52
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.49
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.47
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.47
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.45
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.44
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.43
KOG0062	582	consensus ATPase component of ABC transporters wit	99.43
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.42
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.42
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.39
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.35
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.34
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.32
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	99.27
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.27
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.24
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.23
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.2
COG3910	233	Predicted ATPase [General function prediction only	99.19
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.15
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.13
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.1
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.1
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.02
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.01
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.01
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.97
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.96
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.95
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.84
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.78
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.77
smart00382	148	AAA ATPases associated with a variety of cellular	98.76
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.75
PRK09825	176	idnK D-gluconate kinase; Provisional	98.74
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.73
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.73
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.73
PRK00300	205	gmk guanylate kinase; Provisional	98.72
PRK06067	234	flagellar accessory protein FlaH; Validated	98.72
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.72
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.7
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.7
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.69
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.69
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.68
PRK10416	318	signal recognition particle-docking protein FtsY;	98.67
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.64
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.63
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.6
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.59
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.58
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.57
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.56
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.55
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.52
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.52
PRK01889	356	GTPase RsgA; Reviewed	98.51
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.51
PRK08149	428	ATP synthase SpaL; Validated	98.5
PRK03846	198	adenylylsulfate kinase; Provisional	98.5
PLN02796	347	D-glycerate 3-kinase	98.49
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.49
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.48
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.47
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.47
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.45
PRK06893	229	DNA replication initiation factor; Validated	98.43
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.41
PRK00098	298	GTPase RsgA; Reviewed	98.41
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.4
PRK09099	441	type III secretion system ATPase; Provisional	98.38
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.38
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.38
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.38
PRK05922	434	type III secretion system ATPase; Validated	98.38
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.38
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.37
PRK05480	209	uridine/cytidine kinase; Provisional	98.36
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.36
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.35
PRK09862	506	putative ATP-dependent protease; Provisional	98.35
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.35
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	98.34
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.34
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.34
PRK08084	235	DNA replication initiation factor; Provisional	98.34
PRK04863	1486	mukB cell division protein MukB; Provisional	98.33
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.32
PRK04296	190	thymidine kinase; Provisional	98.32
PLN03046	460	D-glycerate 3-kinase; Provisional	98.31
PLN02318	656	phosphoribulokinase/uridine kinase	98.31
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.3
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.29

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-39  Score=244.69  Aligned_cols=157  Identities=15%  Similarity=0.243  Sum_probs=136.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch---hhccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG---EIRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~---~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      ++|.+||+++|+||||||||||||||+++.+|++|+|.++|..+.   +....|+++|++||++  ++.+++++|+.+..
T Consensus        23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap  102 (240)
T COG1126          23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP  102 (240)
T ss_pred             eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence            578999999999999999999999999999999999999998753   3455678999999988  67788899977765


Q ss_pred             CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .....++..+....+.+.++++|+.+..                    |+.+|+++++||| ++|||....++.++++.+
T Consensus       103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L  182 (240)
T COG1126         103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL  182 (240)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence            5445555555566778899999987543                    9999999999999 699999999999999999


Q ss_pred             hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++ |.|+++|      ||++.++.++|||+
T Consensus       183 A~eGmTMivV------THEM~FAr~Vadrv  206 (240)
T COG1126         183 AEEGMTMIIV------THEMGFAREVADRV  206 (240)
T ss_pred             HHcCCeEEEE------echhHHHHHhhheE
Confidence            87 9999999      99999999999994

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=5.1e-37  Score=242.90  Aligned_cols=178  Identities=16%  Similarity=0.217  Sum_probs=135.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~   76 (193)
                      |++++|++++|+||||||||||||+|+|+++|.+|+|.++|+++..  .+...++++|+||.+  ...+++++...+...
T Consensus        23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~  102 (258)
T COG1120          23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY  102 (258)
T ss_pred             EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence            6799999999999999999999999999999999999999999853  345678999999986  234555554433322


Q ss_pred             CCCCC---Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 ESYRW---PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~~~~~---~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ....+   ....+...+.+.++.+++.+++                    |+++|++|+|||| +.||+..+.+++++++
T Consensus       103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~  182 (258)
T COG1120         103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR  182 (258)
T ss_pred             cccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHH
Confidence            11111   1222333456677777776543                    8999999999999 6999999999999999


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHH
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQ  185 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~  185 (193)
                      .+. + |.|||++      .||++.+.++||++    +|.++.... +.+.+.++..+.
T Consensus       183 ~l~~~~~~tvv~v------lHDlN~A~ryad~~i~lk~G~i~a~G~-p~evlT~e~l~~  234 (258)
T COG1120         183 DLNREKGLTVVMV------LHDLNLAARYADHLILLKDGKIVAQGT-PEEVLTEENLRE  234 (258)
T ss_pred             HHHHhcCCEEEEE------ecCHHHHHHhCCEEEEEECCeEEeecC-cchhcCHHHHHH
Confidence            987 4 9999999      99999999999993    444443332 344566666443

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-36  Score=239.62  Aligned_cols=156  Identities=20%  Similarity=0.253  Sum_probs=123.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec-CC---cccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DD---RRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~-~~---~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|.+|+|.++|+.....+. +.+|||+||.. ..   ..++.+.......
T Consensus        25 l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~-~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~  103 (254)
T COG1121          25 LSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK-RLRIGYVPQKSSVDRSFPITVKDVVLLGRY  103 (254)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc-CCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence            5789999999999999999999999999999999999999987643322 46899999965 11   2233333222211


Q ss_pred             CCC---CCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 ESY---RWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~~~---~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ...   ......+.+.+.++++++++.++.                    |+++|++|+|||| +|+|+.++..+.++++
T Consensus       104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~  183 (254)
T COG1121         104 GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK  183 (254)
T ss_pred             ccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence            111   122223345567888888887553                    8999999999999 7999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |+|||+|      |||+..+.+++|++
T Consensus       184 ~l~~eg~tIl~v------tHDL~~v~~~~D~v  209 (254)
T COG1121         184 ELRQEGKTVLMV------THDLGLVMAYFDRV  209 (254)
T ss_pred             HHHHCCCEEEEE------eCCcHHhHhhCCEE
Confidence            9987 9999999      99999999999994

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-36  Score=236.47  Aligned_cols=156  Identities=15%  Similarity=0.282  Sum_probs=133.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~   76 (193)
                      |+|++||+++++|||||||||+||+|+++++|++|+|.++|+++..  ....|++|||+-|..  ++.+++.+|+.+.. 
T Consensus        22 l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP-  100 (309)
T COG1125          22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP-  100 (309)
T ss_pred             EEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhh-
Confidence            6899999999999999999999999999999999999999999854  335578999999976  67788888865532 


Q ss_pred             CCCCCCcccceeeehhhhhhhcccc--cc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPE--LQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~--~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      ....|.+.....+..+.+..+++..  +.                    |+.+|++++|||| ++|||.+|..+++.+..
T Consensus       101 ~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~  180 (309)
T COG1125         101 KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE  180 (309)
T ss_pred             hhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence            3455666555667778888888863  21                    8999999999999 89999999999999988


Q ss_pred             HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++  |+|||+|      |||++++.+++|++
T Consensus       181 lq~~l~kTivfV------THDidEA~kLadri  206 (309)
T COG1125         181 LQKELGKTIVFV------THDIDEALKLADRI  206 (309)
T ss_pred             HHHHhCCEEEEE------ecCHHHHHhhhceE
Confidence            865  9999999      99999999999995

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.5e-36  Score=234.68  Aligned_cols=152  Identities=16%  Similarity=0.222  Sum_probs=126.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|..+.   ....+++|+||+.  .+..++.+|+.+.....
T Consensus        24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~---~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~  100 (248)
T COG1116          24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT---GPGPDIGYVFQEDALLPWLTVLDNVALGLELR  100 (248)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC---CCCCCEEEEeccCcccchhhHHhhheehhhcc
Confidence            679999999999999999999999999999999999999998872   2356789999987  56778888877765432


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH-HhC
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI-LES  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~-l~~  136 (193)
                      . ....+....+.+.++.+|+....                    ++.+|++|+|||| ++||..++..+++.+.. +++
T Consensus       101 ~-~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~  179 (248)
T COG1116         101 G-KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE  179 (248)
T ss_pred             c-cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh
Confidence            2 22222334677888888886543                    8999999999999 89999999877766655 555


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                       ++||++|      |||++++..++||
T Consensus       180 ~~~TvllV------THdi~EAv~LsdR  200 (248)
T COG1116         180 TRKTVLLV------THDVDEAVYLADR  200 (248)
T ss_pred             hCCEEEEE------eCCHHHHHhhhCE
Confidence             9999999      9999999999998

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4e-36  Score=232.31  Aligned_cols=172  Identities=16%  Similarity=0.274  Sum_probs=137.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++||+++|+||||||||||||+|.|+++|++|+|+++|.++...     ...++++|++||+-  +..+++++|..+
T Consensus        29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf  108 (263)
T COG1127          29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF  108 (263)
T ss_pred             eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence            67999999999999999999999999999999999999999997433     23467899999976  567889999888


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +..+....+.......+...++.+|+...         +            ++.+|+++++||| +||||.+...+.+++
T Consensus       109 plre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI  188 (263)
T COG1127         109 PLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI  188 (263)
T ss_pred             ehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHH
Confidence            77655444443333444555666666533         1            8899999999999 699999999999999


Q ss_pred             HHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          132 RILES--NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       132 ~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      +.+++  |.|+++|      |||++.+..+||++    ++++.  ..++.+++.+
T Consensus       189 ~~L~~~lg~T~i~V------THDl~s~~~i~Drv~~L~~gkv~--~~Gt~~el~~  235 (263)
T COG1127         189 RELNDALGLTVIMV------THDLDSLLTIADRVAVLADGKVI--AEGTPEELLA  235 (263)
T ss_pred             HHHHHhhCCEEEEE------ECChHHHHhhhceEEEEeCCEEE--EeCCHHHHHh
Confidence            99875  9999999      99999999999995    34443  3345555443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-36  Score=247.59  Aligned_cols=158  Identities=13%  Similarity=0.160  Sum_probs=135.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++...+..++.+|+|||+.  ++.+++.+|+.+.....
T Consensus        26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~  105 (352)
T COG3842          26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR  105 (352)
T ss_pred             eeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence            5789999999999999999999999999999999999999999988888889999999997  78899999988876522


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      ..........++.++++.+++..+.                    |+.+|++|||||| ++||...|..+..-++.+. +
T Consensus       106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~  185 (352)
T COG3842         106 KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE  185 (352)
T ss_pred             CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh
Confidence            1122222335677888888877553                    8999999999999 8999999988887777765 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHPG  164 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~~  164 (193)
                       |.|.|+|      |||-+++..++|++.
T Consensus       186 ~giT~i~V------THDqeEAl~msDrI~  208 (352)
T COG3842         186 LGITFVYV------THDQEEALAMSDRIA  208 (352)
T ss_pred             cCCeEEEE------ECCHHHHhhhccceE
Confidence             9999999      999999999999964

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.8e-36  Score=230.86  Aligned_cols=177  Identities=14%  Similarity=0.229  Sum_probs=139.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-----hhccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-----EIRQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-----~~~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++||+++|+||||||||||||+|+|+..|++|+|.++|.++.     +.+..++++||+||++  .+..++++|...
T Consensus        25 l~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~  104 (258)
T COG3638          25 LEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLL  104 (258)
T ss_pred             EEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHh
Confidence            579999999999999999999999999999999999999998763     2345578999999988  456777777544


Q ss_pred             CCCC-------CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccc
Q 029421           74 SSPE-------SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        74 ~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      ....       ..++........+.+.|+++|+.+.+                    |+++|+++|.||| ++|||.+.+
T Consensus       105 grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~  184 (258)
T COG3638         105 GRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAK  184 (258)
T ss_pred             hhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHH
Confidence            3321       12334344455677889999986543                    8999999999999 799999999


Q ss_pred             hHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHH
Q 029421          126 FFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQ  185 (193)
Q Consensus       126 ~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~  185 (193)
                      .++++++.+.+  |.|||++      .|+++.+.+||+|+    ++.+++..+  .+++.++....
T Consensus       185 ~Vm~~l~~in~~~g~Tvi~n------LH~vdlA~~Y~~Riigl~~G~ivfDg~--~~el~~~~~~~  242 (258)
T COG3638         185 KVMDILKDINQEDGITVIVN------LHQVDLAKKYADRIIGLKAGRIVFDGP--ASELTDEALDE  242 (258)
T ss_pred             HHHHHHHHHHHHcCCEEEEE------echHHHHHHHHhhheEecCCcEEEeCC--hhhhhHHHHHH
Confidence            99999999864  9999999      99999999999994    455555443  33354444333

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=237.23  Aligned_cols=157  Identities=16%  Similarity=0.253  Sum_probs=136.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-----hhccCCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-----EIRQGGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-----~~~~~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |+|++|+++||+|.||||||||+|||+++.+|++|+|.++|.++.     ..+..+++||++||+++  ...++++|+.+
T Consensus        27 L~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~  106 (339)
T COG1135          27 LEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF  106 (339)
T ss_pred             EEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhh
Confidence            579999999999999999999999999999999999999998863     34566889999999983  45688899888


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      +.... .+++.+...++.++++.+|+++..                    |+.+|++|++||| ++|||...+.+.++++
T Consensus       107 PLeia-g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~  185 (339)
T COG1135         107 PLELA-GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLK  185 (339)
T ss_pred             hHhhc-CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHH
Confidence            77533 345555567788899999988653                    9999999999999 6999999999999999


Q ss_pred             HHhC--CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421          133 ILES--NIPVLASIPAPKSGRDIPAVARLRNHPG  164 (193)
Q Consensus       133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~  164 (193)
                      .+.+  |.||+++      ||.++.+.++|||+.
T Consensus       186 ~In~~lglTIvlI------THEm~Vvk~ic~rVa  213 (339)
T COG1135         186 DINRELGLTIVLI------THEMEVVKRICDRVA  213 (339)
T ss_pred             HHHHHcCCEEEEE------echHHHHHHHhhhhe
Confidence            9864  9999999      999999999999964

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-35  Score=243.20  Aligned_cols=157  Identities=13%  Similarity=0.164  Sum_probs=132.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|+.||+++|+||||||||||||+|+|+.+|++|+|.++|.++...+...++++++||++  ++.+++++|+.++....
T Consensus        24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~  103 (338)
T COG3839          24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR  103 (338)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence            5789999999999999999999999999999999999999999987777788999999997  78889999988765422


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                       ..+..+..+++.+..+.+++.++.                    ++.+|++++|||| ++||...+..+...++.+++ 
T Consensus       104 -~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~  182 (338)
T COG3839         104 -GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER  182 (338)
T ss_pred             -CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh
Confidence             122333344556666777766543                    8899999999999 89999999888888887765 


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHPG  164 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~~  164 (193)
                       |.|+|+|      |||-.++..++|++.
T Consensus       183 l~~T~IYV------THDq~EAmtladri~  205 (338)
T COG3839         183 LGTTTIYV------THDQVEAMTLADRIV  205 (338)
T ss_pred             cCCcEEEE------cCCHHHHHhhCCEEE
Confidence             9999999      999999999999953

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-34  Score=231.32  Aligned_cols=157  Identities=15%  Similarity=0.207  Sum_probs=129.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece---EchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF---YTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~---~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      ++|+.||.++|+||||||||||||+|+|+..|++|.|.++|.   +........++|||+||+.  ++.+++.+|+.+..
T Consensus        23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl  102 (345)
T COG1118          23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGL  102 (345)
T ss_pred             eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcc
Confidence            578999999999999999999999999999999999999999   5555555678999999997  67789999988876


Q ss_pred             CCCCCCC-cccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           76 PESYRWP-TVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        76 ~~~~~~~-~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      ......+ ......++.+.++.+.++.+.                    ++.+|++|+|||| ++||...++.+...++.
T Consensus       103 ~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~  182 (345)
T COG1118         103 KVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK  182 (345)
T ss_pred             cccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence            4332222 222334455666666665443                    8899999999999 79999999999999988


Q ss_pred             HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+  |.|.++|      |||.+++.++||++
T Consensus       183 ~~~~~~~ttvfV------THD~eea~~ladrv  208 (345)
T COG1118         183 LHDRLGVTTVFV------THDQEEALELADRV  208 (345)
T ss_pred             HHHhhCceEEEE------eCCHHHHHhhcceE
Confidence            764  9999999      99999999999993

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.9e-35  Score=237.65  Aligned_cols=156  Identities=19%  Similarity=0.193  Sum_probs=124.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-hccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-IRQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+... ....++++||+||++  ++.+++.+++.+....
T Consensus        26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l  105 (293)
T COG1131          26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL  105 (293)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999998753 344567899999987  4566777765543221


Q ss_pred             CCCCCcccceeeehhhhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..... ........++++.+++..        ++            |+.+|+++||||| +||||.++..+.++++.+++
T Consensus       106 ~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~  184 (293)
T COG1131         106 YGLSK-EEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK  184 (293)
T ss_pred             hCCCh-hHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHh
Confidence            11111 111234556677777664        11            8899999999999 69999999999999999876


Q ss_pred             -C-CcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -N-IPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g-~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       | .||+++      ||.+++++.+||++
T Consensus       185 ~g~~tvlis------sH~l~e~~~~~d~v  207 (293)
T COG1131         185 EGGVTILLS------THILEEAEELCDRV  207 (293)
T ss_pred             CCCcEEEEe------CCcHHHHHHhCCEE
Confidence             6 899999      99999999999984

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=9.8e-35  Score=225.83  Aligned_cols=155  Identities=16%  Similarity=0.237  Sum_probs=121.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++...      ..+++++||+||++  .+.+++.+|+.
T Consensus        26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~  105 (226)
T COG1136          26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE  105 (226)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence            57999999999999999999999999999999999999999886422      23457899999987  46678888877


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAV  130 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~~l  130 (193)
                      ++......... .........++.+++.+.         +            ++.+|+++++||| ++||..+...+.++
T Consensus       106 lpl~~~~~~~~-~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l  184 (226)
T COG1136         106 LPLLIAGKSAG-RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL  184 (226)
T ss_pred             hHHHHcCCChh-HHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence            64322111111 222334456666666522         1            8999999999999 59999999999999


Q ss_pred             HHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          131 LRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       131 l~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++.+. + |+|||+|      |||.. ++.+|||+
T Consensus       185 l~~~~~~~g~tii~V------THd~~-lA~~~dr~  212 (226)
T COG1136         185 LRELNKERGKTIIMV------THDPE-LAKYADRV  212 (226)
T ss_pred             HHHHHHhcCCEEEEE------cCCHH-HHHhCCEE
Confidence            99985 4 9999999      99965 55689983

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=3.1e-34  Score=214.73  Aligned_cols=155  Identities=17%  Similarity=0.230  Sum_probs=129.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-----hccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-----IRQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-----~~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++||++.|+||||||||||||+|.+..+|++|+|+++|.++..     .+..+++||++||++  -...++++|..+
T Consensus        23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~  102 (223)
T COG2884          23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL  102 (223)
T ss_pred             EeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence            6799999999999999999999999999999999999999999743     344578999999997  456788999887


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      +.... ..+......++.+.++.+|+.+..                    ++.+|++||.||| ++|||.....++.++.
T Consensus       103 pL~v~-G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe  181 (223)
T COG2884         103 PLRVI-GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE  181 (223)
T ss_pred             hhhcc-CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence            76432 223333445667888888876432                    8899999999999 5999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .+.. |.||+++      |||.+.+.++..+
T Consensus       182 einr~GtTVl~A------THd~~lv~~~~~r  206 (223)
T COG2884         182 EINRLGTTVLMA------THDLELVNRMRHR  206 (223)
T ss_pred             HHhhcCcEEEEE------eccHHHHHhccCc
Confidence            9987 9999999      9999888877555

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=219.06  Aligned_cols=177  Identities=16%  Similarity=0.129  Sum_probs=130.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-hccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-IRQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+|||||||||+||+|++++.|++|.|.++|.+... ....++++|.++...  +..++..+|+.+... 
T Consensus        23 F~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~-  101 (245)
T COG4555          23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR-  101 (245)
T ss_pred             EEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHH-
Confidence            6789999999999999999999999999999999999999999743 345578899888433  334555565443211 


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      .......+...+..++.+++++.++.                    ++.+|+++++||| +|||..++..+.+.++++++
T Consensus       102 L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~  181 (245)
T COG4555         102 LNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN  181 (245)
T ss_pred             HhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc
Confidence            01111111123333444555544332                    8999999999999 79999999999999999987


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCCCcE--EEEeCCCChhHHHHHHHH
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHPGAT--IFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~--~~~~~~~~~~~l~~~~~~  184 (193)
                       |.+||++      ||++++++.+||++...  -.++..++.+.+.++...
T Consensus       182 egr~viFS------SH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~  226 (245)
T COG4555         182 EGRAVIFS------SHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVL  226 (245)
T ss_pred             CCcEEEEe------cccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhh
Confidence             9999999      99999999999994211  114445677666665543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=4.3e-34  Score=234.50  Aligned_cols=156  Identities=21%  Similarity=0.217  Sum_probs=119.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++||+||++  ++..++.+++.+... 
T Consensus        28 l~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~-  106 (306)
T PRK13537         28 FHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGR-  106 (306)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHH-
Confidence            67899999999999999999999999999999999999999987432 23457899999986  333566666543111 


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..............++++.+++....                    ++.+|++++|||| +|||+.++..++++++.+++
T Consensus       107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~  186 (306)
T PRK13537        107 YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA  186 (306)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            11111111112233455555554321                    8899999999999 69999999999999999876


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |+|||++      ||+++++.++||++
T Consensus       187 ~g~till~------sH~l~e~~~~~d~i  208 (306)
T PRK13537        187 RGKTILLT------THFMEEAERLCDRL  208 (306)
T ss_pred             CCCEEEEE------CCCHHHHHHhCCEE
Confidence             9999999      99999999999984

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-34  Score=224.31  Aligned_cols=173  Identities=16%  Similarity=0.198  Sum_probs=133.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |++++||+++|+||||||||||+++|+|.++|++|+|.++|+++...+   ..+..++--||.+  ++.+++++|+....
T Consensus        25 l~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~  104 (250)
T COG0411          25 LEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGA  104 (250)
T ss_pred             EEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHh
Confidence            678999999999999999999999999999999999999999875433   2345566678876  66788888866542


Q ss_pred             CCC------CC---C--Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccc
Q 029421           76 PES------YR---W--PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFS  123 (193)
Q Consensus        76 ~~~------~~---~--~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~  123 (193)
                      ...      .+   +  ...+..+.+.++++.+++.+..                    |+.+|++|+|||| +||.+..
T Consensus       105 ~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e  184 (250)
T COG0411         105 HARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEE  184 (250)
T ss_pred             hhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHH
Confidence            211      11   1  0111224456778888886543                    8999999999999 7999999


Q ss_pred             cchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEE--EeCCCChhHHH
Q 029421          124 SSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIF--TLSPGNRDSLK  179 (193)
Q Consensus       124 ~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~--~~~~~~~~~l~  179 (193)
                      ...+.++++.+++  |.||+++      .||+..+..+|||+.+..+  .+..++++++.
T Consensus       185 ~~~l~~~i~~i~~~~g~tillI------EHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~  238 (250)
T COG0411         185 TEELAELIRELRDRGGVTILLI------EHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR  238 (250)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEE------EeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence            9999999999875  6999999      9999999999999643322  45666666544

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.4e-34  Score=220.87  Aligned_cols=153  Identities=18%  Similarity=0.224  Sum_probs=123.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++++|||||||||++|+|+|+++|++|+|.|+|.++..  ..+.+|||.|.+-  ++.+++.+.+.+-. ..
T Consensus        23 f~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~--~~~~rIGyLPEERGLy~k~tv~dql~yla-~L   99 (300)
T COG4152          23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ--EIKNRIGYLPEERGLYPKMTVEDQLKYLA-EL   99 (300)
T ss_pred             eeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh--hhhhhcccChhhhccCccCcHHHHHHHHH-Hh
Confidence            6789999999999999999999999999999999999999988743  2346799999865  45566665543321 12


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                      ...+..+.......+++++.+....                    ++.+|+++||||| +||||.+.+.+.+.+..+++ 
T Consensus       100 kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~  179 (300)
T COG4152         100 KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE  179 (300)
T ss_pred             cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc
Confidence            2233333334455677777765332                    7899999999999 89999999999999999887 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      |.|||++      ||.++.++++||+
T Consensus       180 GatIifS------sH~Me~vEeLCD~  199 (300)
T COG4152         180 GATIIFS------SHRMEHVEELCDR  199 (300)
T ss_pred             CCEEEEe------cchHHHHHHHhhh
Confidence            9999999      9999999999998

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-33  Score=235.00  Aligned_cols=156  Identities=13%  Similarity=0.174  Sum_probs=124.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+|+|+|+.+|++|+|.++|+++......++++||+||++  ++.+++.+|+.+.... 
T Consensus        25 l~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~-  103 (356)
T PRK11650         25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKI-  103 (356)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhh-
Confidence            5789999999999999999999999999999999999999998754433446899999987  4456778877654321 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............++++.+++.++.                    ++.+|+++||||| ++||+..+..+.+.++.+. +
T Consensus       104 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~  183 (356)
T PRK11650        104 RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR  183 (356)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            1111111123345667777775432                    8899999999999 7999999999988888875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||..++..+||++
T Consensus       184 ~g~tii~v------THd~~ea~~l~D~i  205 (356)
T PRK11650        184 LKTTSLYV------THDQVEAMTLADRV  205 (356)
T ss_pred             cCCEEEEE------eCCHHHHHHhCCEE
Confidence             8999999      99999999999994

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=2.1e-33  Score=233.13  Aligned_cols=156  Identities=19%  Similarity=0.210  Sum_probs=119.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||+||++  .+..++.+++.+... 
T Consensus        62 ~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~-  140 (340)
T PRK13536         62 FTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGR-  140 (340)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHH-
Confidence            67999999999999999999999999999999999999999987422 23456799999986  234556665443111 


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..............++++.+++...        +            ++.+|+++||||| +|||+.++..++++++.+++
T Consensus       141 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~  220 (340)
T PRK13536        141 YFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA  220 (340)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence            0111111111123345566665432        1            8899999999999 69999999999999999876


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      ||+++++.++||++
T Consensus       221 ~g~tilis------SH~l~e~~~~~d~i  242 (340)
T PRK13536        221 RGKTILLT------THFMEEAERLCDRL  242 (340)
T ss_pred             CCCEEEEE------CCCHHHHHHhCCEE
Confidence             9999999      99999999999994

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.98  E-value=2.2e-33  Score=230.03  Aligned_cols=156  Identities=18%  Similarity=0.239  Sum_probs=118.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++++||+||++  .+..++.+++.+... 
T Consensus        14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-   92 (302)
T TIGR01188        14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGR-   92 (302)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHH-
Confidence            67899999999999999999999999999999999999999886422 22356799999986  233455555433211 


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..............++++.+++....                    ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~  172 (302)
T TIGR01188        93 LYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE  172 (302)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            00111111112234566666664321                    8899999999999 69999999999999998876


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      ||+++++.++||++
T Consensus       173 ~g~tvi~~------sH~~~~~~~~~d~v  194 (302)
T TIGR01188       173 EGVTILLT------THYMEEADKLCDRI  194 (302)
T ss_pred             CCCEEEEE------CCCHHHHHHhCCEE
Confidence             9999999      99999999999984

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.98  E-value=5.7e-33  Score=218.88  Aligned_cols=156  Identities=19%  Similarity=0.277  Sum_probs=124.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch---hhccCCceeeEEEeecCCcc---cccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG---EIRQGGQRVGFEVVTLDDRR---APLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~---~~~~~~~~ig~~~q~~~~~~---~~~~~~~~~   74 (193)
                      |+|++|++++|+|+||||||||+++++|+++|++|.|.++|.+..   .....++++||+||+|..+.   ++.+.+.+.
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg  104 (235)
T COG1122          25 LEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG  104 (235)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhc
Confidence            578999999999999999999999999999999999999999864   24556789999999985432   333333333


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      .. ....+..+...++.+.++.+++.++.                    ++.+|++|||||| ++||+.++..+.++++.
T Consensus       105 ~~-n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~  183 (235)
T COG1122         105 LE-NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK  183 (235)
T ss_pred             hh-hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            22 12222222334556777777775432                    8899999999999 69999999999999999


Q ss_pred             HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++  |+|+|++      |||++.+..+||++
T Consensus       184 L~~~~~~tii~~------tHd~~~~~~~ad~v  209 (235)
T COG1122         184 LKEEGGKTIIIV------THDLELVLEYADRV  209 (235)
T ss_pred             HHhcCCCeEEEE------eCcHHHHHhhCCEE
Confidence            875  6899999      99999999999994

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.98  E-value=2.3e-33  Score=234.04  Aligned_cols=156  Identities=13%  Similarity=0.177  Sum_probs=125.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+|+|+|+.+|++|+|.++|+++......++++||+||++  ++.+++.+|+.+.... 
T Consensus        25 ~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~-  103 (353)
T TIGR03265        25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKN-  103 (353)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHh-
Confidence            5789999999999999999999999999999999999999998754444457899999987  4556788876654321 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............++++.+++..+.                    |+.+|+++||||| ++||+..+..+...++.+. +
T Consensus       104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~  183 (353)
T TIGR03265       104 RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR  183 (353)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence            1111111223455677777776542                    8899999999999 7999999999998888874 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||.+++..+||++
T Consensus       184 ~~~tvi~v------THd~~ea~~l~d~i  205 (353)
T TIGR03265       184 LGVTTIMV------THDQEEALSMADRI  205 (353)
T ss_pred             cCCEEEEE------cCCHHHHHHhCCEE
Confidence             8999999      99999999999994

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=3.4e-33  Score=232.70  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=124.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++......++++||+||++  ++.+++.+|+.+.... 
T Consensus        27 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~-  105 (351)
T PRK11432         27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKM-  105 (351)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhH-
Confidence            5789999999999999999999999999999999999999998754444457899999987  4556778887654321 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............++++.+++..+.                    |+.+|+++||||| ++||+..+..+...++.+. +
T Consensus       106 ~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  185 (351)
T PRK11432        106 LGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ  185 (351)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence            1111111223345566666665432                    8899999999999 7999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||.+++..+||++
T Consensus       186 ~g~tii~v------THd~~e~~~laD~i  207 (351)
T PRK11432        186 FNITSLYV------THDQSEAFAVSDTV  207 (351)
T ss_pred             cCCEEEEE------cCCHHHHHHhCCEE
Confidence             8999999      99999999999994

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.98  E-value=4.9e-33  Score=220.33  Aligned_cols=157  Identities=17%  Similarity=0.278  Sum_probs=117.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|+||++  .+..++.+++.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~  100 (235)
T cd03261          21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF  100 (235)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHH
Confidence            57899999999999999999999999999999999999999876422     22356799999986  233455565443


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ..................+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  180 (235)
T cd03261         101 PLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR  180 (235)
T ss_pred             HHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence            21100001111111223445666666432        1            8899999999999 6999999999999998


Q ss_pred             HHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++  |.|||++      |||++++..+||++
T Consensus       181 ~~~~~~~~tvi~v------sH~~~~~~~~~d~v  207 (235)
T cd03261         181 SLKKELGLTSIMV------THDLDTAFAIADRI  207 (235)
T ss_pred             HHHHhcCcEEEEE------ecCHHHHHHhcCEE
Confidence            8753  8999999      99999999999984

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.98  E-value=7.4e-33  Score=229.85  Aligned_cols=156  Identities=15%  Similarity=0.231  Sum_probs=123.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...     +..++++||+||++  .+..++.+|+.+
T Consensus        26 l~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~  105 (343)
T TIGR02314        26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVAL  105 (343)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHH
Confidence            67899999999999999999999999999999999999999987432     22356899999986  334566776654


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... ..+..........+.++.+++.+..                    |+.+|++||+||| ++||+.++..+.++++
T Consensus       106 ~~~~-~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~  184 (343)
T TIGR02314       106 PLEL-DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK  184 (343)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            3211 1112212223455677777775432                    8899999999999 6999999999999999


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |.|||++      ||+++.+.++||++
T Consensus       185 ~l~~~~g~tiili------TH~~~~v~~~~d~v  211 (343)
T TIGR02314       185 EINRRLGLTILLI------THEMDVVKRICDCV  211 (343)
T ss_pred             HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            885 4 9999999      99999999999994

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.98  E-value=9e-33  Score=230.45  Aligned_cols=157  Identities=16%  Similarity=0.218  Sum_probs=123.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++  ++..++.+|+.+.....
T Consensus        23 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~  102 (353)
T PRK10851         23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL  102 (353)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhc
Confidence            5789999999999999999999999999999999999999998754333456799999986  44567777766543211


Q ss_pred             C---CCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           79 Y---RWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        79 ~---~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .   ............++++.+++.++.                    ++.+|+++||||| ++||+..+..+.++++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l  182 (353)
T PRK10851        103 PRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL  182 (353)
T ss_pred             ccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            0   011111123445677777775432                    8899999999999 799999999999999887


Q ss_pred             h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      . + |.|+|++      |||.+++..+||++
T Consensus       183 ~~~~g~tii~v------THd~~ea~~~~Dri  207 (353)
T PRK10851        183 HEELKFTSVFV------THDQEEAMEVADRV  207 (353)
T ss_pred             HHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            5 4 8999999      99999999999994

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.98  E-value=5.4e-33  Score=216.95  Aligned_cols=156  Identities=15%  Similarity=0.198  Sum_probs=117.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|+||++.  ...+..+++.+.... 
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~-   99 (213)
T cd03259          21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKL-   99 (213)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHH-
Confidence            67899999999999999999999999999999999999999887433333467999999862  234555554332110 


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~  179 (213)
T cd03259         100 RGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE  179 (213)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence            001111111223455666665432        1            8899999999999 6999999999999998875 3


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      |||.+++.++||++
T Consensus       180 ~~~tii~~------sH~~~~~~~~~d~v  201 (213)
T cd03259         180 LGITTIYV------THDQEEALALADRI  201 (213)
T ss_pred             cCCEEEEE------ecCHHHHHHhcCEE
Confidence             8999999      99999999999983

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.98  E-value=4e-33  Score=218.12  Aligned_cols=156  Identities=17%  Similarity=0.223  Sum_probs=117.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cCCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QGGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....     ..++.++|++|++.  +..++.+++.+
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~  103 (216)
T TIGR00960        24 FHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAF  103 (216)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHH
Confidence            578999999999999999999999999999999999999998764211     13457999999862  33455565443


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............+.++.+++....                    ++.+|+++||||| ++||+.++..+.++++
T Consensus       104 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  182 (216)
T TIGR00960       104 PLRI-IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFE  182 (216)
T ss_pred             HHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence            2110 0011111112334556666664321                    8899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      |||.+++..+||++
T Consensus       183 ~~~~~~~tii~v------sH~~~~~~~~~d~i  208 (216)
T TIGR00960       183 EFNRRGTTVLVA------THDINLVETYRHRT  208 (216)
T ss_pred             HHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence            8865 8999999      99999999999983

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.98  E-value=1e-32  Score=214.30  Aligned_cols=151  Identities=19%  Similarity=0.233  Sum_probs=116.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC---CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD---DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~---~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++|++.   ...+..+++.+....
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~   99 (205)
T cd03226          21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-KERRKSIGYVMQDVDYQLFTDSVREELLLGLKE   99 (205)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-HHhhcceEEEecChhhhhhhccHHHHHhhhhhh
Confidence            5789999999999999999999999999999999999999988643 223457999999852   223555554332111


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      .   .  .......+.++.+++....                    ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus       100 ~---~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  174 (205)
T cd03226         100 L---D--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA  174 (205)
T ss_pred             c---C--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            0   0  0112234556666664321                    7889999999999 69999999999999998865


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      ||+++++..+||++
T Consensus       175 ~~~tii~~------sH~~~~~~~~~d~i  196 (205)
T cd03226         175 QGKAVIVI------THDYEFLAKVCDRV  196 (205)
T ss_pred             CCCEEEEE------eCCHHHHHHhCCEE
Confidence             8999999      99999999999984

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.98  E-value=1e-32  Score=213.89  Aligned_cols=157  Identities=16%  Similarity=0.168  Sum_probs=120.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecCCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~   77 (193)
                      |+|.+||+++|+|+||||||||.|+|+|+.+|++|+|.++|+.....   +...+.+.++||+|....++.........+
T Consensus        28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E  107 (252)
T COG1124          28 LEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE  107 (252)
T ss_pred             EEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence            67899999999999999999999999999999999999999876322   245678899999995444444322111111


Q ss_pred             CCCCC-cccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           78 SYRWP-TVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        78 ~~~~~-~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      ..... .....+.+.++++.+|+..-         +            |..+|++||+||| ++||...+.++++++..+
T Consensus       108 pl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l  187 (252)
T COG1124         108 PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL  187 (252)
T ss_pred             hhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHH
Confidence            11000 00111225677777777531         1            8899999999999 799999999999999988


Q ss_pred             hC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++  +.|+|++      |||+..+..+|||+
T Consensus       188 ~~~~~lt~l~I------sHdl~~v~~~cdRi  212 (252)
T COG1124         188 KKERGLTYLFI------SHDLALVEHMCDRI  212 (252)
T ss_pred             HHhcCceEEEE------eCcHHHHHHHhhhe
Confidence            75  8999999      99999999999995

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.98  E-value=8e-33  Score=232.12  Aligned_cols=156  Identities=13%  Similarity=0.187  Sum_probs=124.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||||+|+|+++|++|+|.++|.++...+..++.+||+||++  ++.+++.+|+.+.....
T Consensus        35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~  114 (375)
T PRK09452         35 LTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ  114 (375)
T ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence            5789999999999999999999999999999999999999998754444457899999987  45667888876543211


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                       ............++++.+++..+.                    |+.+|+++||||| ++||+..+..+...++.+. +
T Consensus       115 -~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~  193 (375)
T PRK09452        115 -KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRK  193 (375)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence             111111122345566666765432                    8899999999999 7999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||..++..+||++
T Consensus       194 ~g~tiI~v------THd~~ea~~laDri  215 (375)
T PRK09452        194 LGITFVFV------THDQEEALTMSDRI  215 (375)
T ss_pred             cCCEEEEE------eCCHHHHHHhCCEE
Confidence             9999999      99999999999994

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.98  E-value=7e-33  Score=231.32  Aligned_cols=156  Identities=15%  Similarity=0.296  Sum_probs=123.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cC----CceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QG----GQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~----~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....  ..    ++.++|+||++  ++..++.+|+.
T Consensus        14 ~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~   93 (363)
T TIGR01186        14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTS   93 (363)
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHH
Confidence            679999999999999999999999999999999999999999874321  11    56899999987  34457777765


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +... ...+..........++++.+++..+.                    ++.+|+++||||| ++||+.++..+.+++
T Consensus        94 ~~~~-~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l  172 (363)
T TIGR01186        94 LGPE-LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL  172 (363)
T ss_pred             HHHH-HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4322 11222222233456677777776432                    8899999999999 799999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+. + |+|||++      |||++++.++||++
T Consensus       173 ~~l~~~~~~Tii~v------THd~~ea~~~~drI  200 (363)
T TIGR01186       173 KKLQATLQKTIVFI------THDLDEAIRIGDRI  200 (363)
T ss_pred             HHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            8875 4 8999999      99999999999994

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.97  E-value=1.1e-32  Score=215.07  Aligned_cols=157  Identities=13%  Similarity=0.235  Sum_probs=117.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC--CcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD--DRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~--~~~~~~~~~~~~   74 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    ....++.++|++|++.  +..+..+++.+.
T Consensus        21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~  100 (213)
T cd03262          21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA  100 (213)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhH
Confidence            5789999999999999999999999999999999999999987631    1223567999999863  234555554332


Q ss_pred             CCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      .................+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  180 (213)
T cd03262         101 PIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKD  180 (213)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            1100011111111223445555665432        1            8899999999999 69999999999999998


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++ |.|||++      ||+.+++.++||++
T Consensus       181 ~~~~~~tvi~~------sh~~~~~~~~~d~i  205 (213)
T cd03262         181 LAEEGMTMVVV------THEMGFAREVADRV  205 (213)
T ss_pred             HHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            876 8999999      99999999999984

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.97  E-value=9.1e-33  Score=230.90  Aligned_cols=156  Identities=13%  Similarity=0.186  Sum_probs=123.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC--CCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN--PSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~--G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||||+|+|+++|++  |+|.++|.++......++.+||+||++  ++.+++.+|+.+...
T Consensus        26 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~  105 (362)
T TIGR03258        26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLR  105 (362)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence            5789999999999999999999999999999999  999999998754333456799999987  455677777655432


Q ss_pred             CCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      .. ............++++.+++.++.                    |+.+|+++||||| ++||+..+..+.+.++.+.
T Consensus       106 ~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~  184 (362)
T TIGR03258       106 AQ-KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH  184 (362)
T ss_pred             Hc-CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence            11 111111223355677777776432                    8899999999999 7999999999999998875


Q ss_pred             C---CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 S---NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 ~---g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +   |.|+|++      |||.+++..+||++
T Consensus       185 ~~~~g~til~v------THd~~ea~~l~dri  209 (362)
T TIGR03258       185 EELPELTILCV------THDQDDALTLADKA  209 (362)
T ss_pred             HhCCCCEEEEE------eCCHHHHHHhCCEE
Confidence            3   6899999      99999999999994

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.97  E-value=2.9e-32  Score=212.54  Aligned_cols=156  Identities=13%  Similarity=0.173  Sum_probs=117.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++.  +..++.+++.+.....
T Consensus        19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~   98 (211)
T cd03298          19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPG   98 (211)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccc
Confidence            57899999999999999999999999999999999999999887433223467999999863  2345566654322110


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      ... .........++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.++ +
T Consensus        99 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~  177 (211)
T cd03298          99 LKL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE  177 (211)
T ss_pred             cCc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence            000 00111223455666665432        1            7899999999999 6999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      ||+++++..+||++
T Consensus       178 ~~~tii~~------sH~~~~~~~~~d~i  199 (211)
T cd03298         178 TKMTVLMV------THQPEDAKRLAQRV  199 (211)
T ss_pred             cCCEEEEE------ecCHHHHHhhhCEE
Confidence             8999999      99999999999984

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=8e-34  Score=214.14  Aligned_cols=173  Identities=14%  Similarity=0.189  Sum_probs=132.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|++||+++|+|||||||||.+.++.|+++|++|+|.++|.++...+   +.+..+||.||++  +..+++.+|+....
T Consensus        25 l~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vl  104 (243)
T COG1137          25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVL  104 (243)
T ss_pred             EEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHH
Confidence            578999999999999999999999999999999999999999985433   3456799999988  44567777765433


Q ss_pred             CCCCCC-Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           76 PESYRW-PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        76 ~~~~~~-~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      ...... ..........+.++.+.+.++.                    |+.+|++++|||| +|.||.+...+..+++.
T Consensus       105 E~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~  184 (243)
T COG1137         105 EIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH  184 (243)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence            321111 1111122234666766665442                    8899999999999 89999999999999999


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHHHHhcCCCcEE--EEeCCCChhHHH
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVARLRNHPGATI--FTLSPGNRDSLK  179 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~--~~~~~~~~~~l~  179 (193)
                      |++ |..|+++      .|+..+...+|||.....  .++..++++++.
T Consensus       185 L~~rgiGvLIT------DHNVREtL~i~dRaYIi~~G~vla~G~p~ei~  227 (243)
T COG1137         185 LKDRGIGVLIT------DHNVRETLDICDRAYIISDGKVLAEGSPEEIV  227 (243)
T ss_pred             HHhCCceEEEc------cccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence            988 9999999      999999999999943221  145555655443

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.97  E-value=2.1e-32  Score=213.52  Aligned_cols=156  Identities=13%  Similarity=0.168  Sum_probs=117.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++.  ...+..+++.+.... 
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-   99 (213)
T cd03301          21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL-   99 (213)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHh-
Confidence            57899999999999999999999999999999999999999887433333467999999862  234555554332110 


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  179 (213)
T cd03301         100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR  179 (213)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence            011111111223445666665432        1            7899999999999 6999999999999998875 3


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      |||.+++..+||++
T Consensus       180 ~~~tvi~~------sH~~~~~~~~~d~i  201 (213)
T cd03301         180 LGTTTIYV------THDQVEAMTMADRI  201 (213)
T ss_pred             cCCEEEEE------eCCHHHHHHhcCeE
Confidence             8999999      99999999999984

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.97  E-value=2e-32  Score=224.24  Aligned_cols=156  Identities=15%  Similarity=0.110  Sum_probs=118.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.+||+||++  ++..++.+++.+... 
T Consensus        23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~-  101 (301)
T TIGR03522        23 FEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG-  101 (301)
T ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHH-
Confidence            57899999999999999999999999999999999999999886432 23356799999986  333455665433211 


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..............+.++.+++....                    ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~  181 (301)
T TIGR03522       102 IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK  181 (301)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC
Confidence            01111111112234555666654321                    8899999999999 69999999999999999877


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.|||++      ||+++++.++||++
T Consensus       182 ~~tiii~------sH~l~~~~~~~d~i  202 (301)
T TIGR03522       182 DKTIILS------THIMQEVEAICDRV  202 (301)
T ss_pred             CCEEEEE------cCCHHHHHHhCCEE
Confidence            8999999      99999999999994

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.97  E-value=3.4e-32  Score=216.02  Aligned_cols=157  Identities=15%  Similarity=0.203  Sum_probs=117.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++.  +..++.+++.+.....
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  102 (239)
T cd03296          23 LDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVK  102 (239)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhc
Confidence            57899999999999999999999999999999999999999886433223467999999862  2345556554322110


Q ss_pred             CCC---Ccccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           79 YRW---PTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        79 ~~~---~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      ..+   ..........++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  182 (239)
T cd03296         103 PRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRL  182 (239)
T ss_pred             cccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            000   000111223345666665432        1            8899999999999 699999999999999887


Q ss_pred             h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      + + |.|||++      |||.+.+..+||++
T Consensus       183 ~~~~~~tvii~------sH~~~~~~~~~d~i  207 (239)
T cd03296         183 HDELHVTTVFV------THDQEEALEVADRV  207 (239)
T ss_pred             HHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            5 3 8999999      99999999999984

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.97  E-value=1.9e-32  Score=214.02  Aligned_cols=156  Identities=19%  Similarity=0.262  Sum_probs=116.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|++|++.  +..+..+++.+
T Consensus        23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  102 (214)
T TIGR02673        23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL  102 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHH
Confidence            67899999999999999999999999999999999999999886422     123467999999862  23455555433


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ..... ............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       103 ~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  181 (214)
T TIGR02673       103 PLEVR-GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLK  181 (214)
T ss_pred             HHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            21100 00111111223345555555422        1            8899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      ||+.+++..+||++
T Consensus       182 ~~~~~~~tii~~------tH~~~~~~~~~d~i  207 (214)
T TIGR02673       182 RLNKRGTTVIVA------THDLSLVDRVAHRV  207 (214)
T ss_pred             HHHHcCCEEEEE------eCCHHHHHHhcCEE
Confidence            8865 9999999      99999999999984

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.97  E-value=2.9e-32  Score=213.48  Aligned_cols=155  Identities=16%  Similarity=0.241  Sum_probs=115.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....      ..++.++|++|++  +...++.+++.
T Consensus        25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~  104 (218)
T cd03255          25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE  104 (218)
T ss_pred             EEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHH
Confidence            578999999999999999999999999999999999999998764321      1245799999986  23345555543


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +.... .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.+++
T Consensus       105 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l  183 (218)
T cd03255         105 LPLLL-AGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL  183 (218)
T ss_pred             HHHhh-cCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            32110 011111111223455666666432        1            8899999999999 699999999999999


Q ss_pred             HHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+++  |+|||++      ||+.+++. +||++
T Consensus       184 ~~~~~~~~~tii~~------sH~~~~~~-~~d~v  210 (218)
T cd03255         184 RELNKEAGTTIVVV------THDPELAE-YADRI  210 (218)
T ss_pred             HHHHHhcCCeEEEE------ECCHHHHh-hhcEE
Confidence            98754  8999999      99999886 89873

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.97  E-value=6.6e-32  Score=228.02  Aligned_cols=157  Identities=17%  Similarity=0.198  Sum_probs=121.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..  .+..++++||++|++.  ...++.+++.+...
T Consensus        24 ~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~  103 (402)
T PRK09536         24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRT  103 (402)
T ss_pred             EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccc
Confidence            5789999999999999999999999999999999999999998743  2334577999999862  34566666544321


Q ss_pred             CCC-CCC--cccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 ESY-RWP--TVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~~~-~~~--~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ... .+.  .........+.++.+++.++.                    |+++|++|||||| ++||+.++..+.++++
T Consensus       104 ~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~  183 (402)
T PRK09536        104 PHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR  183 (402)
T ss_pred             hhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence            110 111  111223345666777765432                    8899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+ |.|||++      |||++++.++||++
T Consensus       184 ~l~~~g~TIIiv------sHdl~~~~~~adri  209 (402)
T PRK09536        184 RLVDDGKTAVAA------IHDLDLAARYCDEL  209 (402)
T ss_pred             HHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence            9876 9999999      99999999999994

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.97  E-value=2.3e-32  Score=224.15  Aligned_cols=156  Identities=18%  Similarity=0.191  Sum_probs=117.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+||+||++.  +..++.+++.+... 
T Consensus        25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-  103 (303)
T TIGR01288        25 FTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGR-  103 (303)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHH-
Confidence            67999999999999999999999999999999999999999886322 223567999999862  33455555432111 


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..............++++.+++...        +            ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus       104 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~  183 (303)
T TIGR01288       104 YFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA  183 (303)
T ss_pred             HcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            0011111111122345555555432        1            8899999999999 69999999999999998866


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      |||++++.++||++
T Consensus       184 ~g~til~~------sH~~~~~~~~~d~i  205 (303)
T TIGR01288       184 RGKTILLT------THFMEEAERLCDRL  205 (303)
T ss_pred             CCCEEEEE------CCCHHHHHHhCCEE
Confidence             9999999      99999999999984

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5e-32  Score=227.58  Aligned_cols=156  Identities=12%  Similarity=0.153  Sum_probs=123.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||||+|+|+.+|++|+|.++|+++......++.+||+||++  ++.+++.+|+.+.....
T Consensus        40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~  119 (377)
T PRK11607         40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD  119 (377)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999999999999999999999999998754444567899999987  55567888876543211


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH-hC
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL-ES  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l-~~  136 (193)
                       ............++++.+++..+.                    ++.+|++|||||| ++||+..+..+.+.++.+ ++
T Consensus       120 -~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  198 (377)
T PRK11607        120 -KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER  198 (377)
T ss_pred             -CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence             111111122345666777765432                    8899999999999 799999998888777665 44


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||.+++..+||++
T Consensus       199 ~g~tii~v------THd~~ea~~laDri  220 (377)
T PRK11607        199 VGVTCVMV------THDQEEAMTMAGRI  220 (377)
T ss_pred             cCCEEEEE------cCCHHHHHHhCCEE
Confidence             9999999      99999999999994

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=2.5e-32  Score=212.83  Aligned_cols=156  Identities=17%  Similarity=0.234  Sum_probs=115.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec---CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL---DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~---~~~~~~~~~~~~~~   75 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++   ....+..+++.+..
T Consensus        22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~  101 (211)
T cd03225          22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL  101 (211)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHH
Confidence            57899999999999999999999999999999999999999876422  22346799999975   22345555543311


Q ss_pred             CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .. .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       102 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~  180 (211)
T cd03225         102 EN-LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL  180 (211)
T ss_pred             HH-cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            10 000100111223345555555421        1            8899999999999 699999999999999988


Q ss_pred             hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++ |.|||++      |||++++..+||++
T Consensus       181 ~~~~~tvi~~------sH~~~~~~~~~d~i  204 (211)
T cd03225         181 KAEGKTIIIV------THDLDLLLELADRV  204 (211)
T ss_pred             HHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            65 8999999      99999999999984

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.1e-32  Score=228.56  Aligned_cols=156  Identities=13%  Similarity=0.144  Sum_probs=121.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++.+||+||++  ++..++.+|+.+.....
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~  103 (369)
T PRK11000         24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA  103 (369)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence            5789999999999999999999999999999999999999998754333346799999986  34456777765432110


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                       ............++++.+++..+.                    |+.+|++|||||| ++||+.++..+.++++.+. +
T Consensus       104 -~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~  182 (369)
T PRK11000        104 -GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR  182 (369)
T ss_pred             -CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence             111111122345566777765321                    8899999999999 6999999999999998874 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||.+++..+||++
T Consensus       183 ~g~tvI~v------THd~~~~~~~~d~i  204 (369)
T PRK11000        183 LGRTMIYV------THDQVEAMTLADKI  204 (369)
T ss_pred             hCCEEEEE------eCCHHHHHHhCCEE
Confidence             8999999      99999999999984

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.97  E-value=1.9e-32  Score=214.47  Aligned_cols=156  Identities=19%  Similarity=0.226  Sum_probs=118.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-hccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-IRQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++.++|++|++  ++..++.+++.+....
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  105 (218)
T cd03266          26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGL  105 (218)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999988642 122346799999986  2334555554332110


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                       .............++++.+++.+..                    ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus       106 -~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~  184 (218)
T cd03266         106 -YGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA  184 (218)
T ss_pred             -cCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence             0111111122334566666665321                    8899999999999 69999999999999998865


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      ||+.+++..+||++
T Consensus       185 ~~~tii~~------tH~~~~~~~~~d~i  206 (218)
T cd03266         185 LGKCILFS------THIMQEVERLCDRV  206 (218)
T ss_pred             CCCEEEEE------eCCHHHHHHhcCEE
Confidence             8999999      99999999999983

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.97  E-value=4.1e-32  Score=215.02  Aligned_cols=157  Identities=18%  Similarity=0.231  Sum_probs=117.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--c-CCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--Q-GGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~-~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....  . .+..++|+||++  .+..++.+++.+..
T Consensus        21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~  100 (236)
T cd03219          21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAA  100 (236)
T ss_pred             EEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHH
Confidence            578999999999999999999999999999999999999998864321  1 234699999986  23345555543321


Q ss_pred             CCCCCC---------Ccccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421           76 PESYRW---------PTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        76 ~~~~~~---------~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      ......         ..........+.++.+++...        +            ++.+|+++||||| ++||+.++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~  180 (236)
T cd03219         101 QARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE  180 (236)
T ss_pred             hhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            110000         001111223456666666432        1            7899999999999 699999999


Q ss_pred             hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+++ |.|||++      |||++++..+||++
T Consensus       181 ~l~~~l~~~~~~~~tii~v------sH~~~~~~~~~d~i  213 (236)
T cd03219         181 ELAELIRELRERGITVLLV------EHDMDVVMSLADRV  213 (236)
T ss_pred             HHHHHHHHHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence            99999998875 8999999      99999999999984

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.97  E-value=4e-32  Score=212.06  Aligned_cols=154  Identities=20%  Similarity=0.249  Sum_probs=115.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC----cccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD----RRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~----~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..   .++.++|++|++..    ..++.+++.+...
T Consensus        20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~   96 (213)
T cd03235          20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK---ERKRIGYVPQRRSIDRDFPISVRDVVLMGLY   96 (213)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHH---HHhheEEeccccccccCCCCcHHHHHHhccc
Confidence            6789999999999999999999999999999999999999987642   24579999998631    1355555443221


Q ss_pred             CCCC---CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 ESYR---WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~~~~---~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ....   ...........+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  176 (213)
T cd03235          97 GHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLR  176 (213)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            1000   0011111223445555555421        1            7899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      |||.+++.++||++
T Consensus       177 ~~~~~~~tvi~~------sH~~~~~~~~~d~i  202 (213)
T cd03235         177 ELRREGMTILVV------THDLGLVLEYFDRV  202 (213)
T ss_pred             HHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence            8875 8999999      99999999999983

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.97  E-value=3.2e-32  Score=212.16  Aligned_cols=154  Identities=19%  Similarity=0.234  Sum_probs=115.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..  ..++.++|++|++.  +..+..+++.+... .
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-~   97 (210)
T cd03269          21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--AARNRIGYLPEERGLYPKMKVIDQLVYLAQ-L   97 (210)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--HHHccEEEeccCCcCCcCCcHHHHHHHHHH-H
Confidence            5789999999999999999999999999999999999999987643  23457999999862  23455555432110 0


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                      .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++ 
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~  177 (210)
T cd03269          98 KGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA  177 (210)
T ss_pred             cCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence            011111111223455566665422        1            7899999999999 69999999999999988865 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |.|||++      ||+.+++.++||++
T Consensus       178 ~~tii~~------sH~~~~~~~~~d~i  198 (210)
T cd03269         178 GKTVILS------THQMELVEELCDRV  198 (210)
T ss_pred             CCEEEEE------CCCHHHHHHhhhEE
Confidence            8999999      99999999999983

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.7e-31  Score=212.39  Aligned_cols=157  Identities=17%  Similarity=0.252  Sum_probs=116.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|+||++  .+..+..+++.+
T Consensus        23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~  102 (243)
T TIGR02315        23 LNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLH  102 (243)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhh
Confidence            67899999999999999999999999999999999999999886421     12346799999986  233455555443


Q ss_pred             CCCCCC-------CCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421           74 SSPESY-------RWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        74 ~~~~~~-------~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      ......       ............+.++.+++...        +            ++.+|+++||||| ++||+.++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~  182 (243)
T TIGR02315       103 GRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK  182 (243)
T ss_pred             cccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            211100       00011111223455666665432        1            8899999999999 699999999


Q ss_pred             hHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+. + |+|||++      ||+.+.+.++||++
T Consensus       183 ~l~~~l~~~~~~~~~tiii~------tH~~~~~~~~~d~v  216 (243)
T TIGR02315       183 QVMDYLKRINKEDGITVIIN------LHQVDLAKKYADRI  216 (243)
T ss_pred             HHHHHHHHHHHHcCCEEEEE------eCCHHHHHHhcCeE
Confidence            9999998874 4 8999999      99999999999984

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.97  E-value=4e-32  Score=211.34  Aligned_cols=152  Identities=16%  Similarity=0.209  Sum_probs=115.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|+||++  .+..++.+++.+.....
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~  100 (208)
T cd03268          21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL  100 (208)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999987643223345799999976  22345555543321100


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                       ..    ......+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++ 
T Consensus       101 -~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  175 (208)
T cd03268         101 -GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ  175 (208)
T ss_pred             -CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC
Confidence             00    11223345555555332        1            8899999999999 69999999999999998875 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |.|+|++      |||.+++..+||++
T Consensus       176 ~~tii~~------tH~~~~~~~~~d~v  196 (208)
T cd03268         176 GITVLIS------SHLLSEIQKVADRI  196 (208)
T ss_pred             CCEEEEE------cCCHHHHHHhcCEE
Confidence            8999999      99999999999983

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=5e-32  Score=216.68  Aligned_cols=164  Identities=16%  Similarity=0.284  Sum_probs=135.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-----hc-cCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-----IR-QGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-----~~-~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++||+++|+|-||||||||+|+++++++|++|+|.++|.++..     .+ .++++++++||.+  .+..++++|..
T Consensus        49 l~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~  128 (386)
T COG4175          49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVA  128 (386)
T ss_pred             eeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhh
Confidence            6799999999999999999999999999999999999999998732     22 2357899999988  57788888877


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +... ....+..+..++..++++.+|+..+.                    |+.+|++|++||| ++|||.-+...++-+
T Consensus       129 fGLe-v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeL  207 (386)
T COG4175         129 FGLE-VQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDEL  207 (386)
T ss_pred             ccee-ecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHH
Confidence            7654 23345555666778888988887654                    8999999999999 899999998887776


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLS  171 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~  171 (193)
                      ..+. + ++||+++      |||++++.++.||+    +|.++-+.
T Consensus       208 l~Lq~~l~KTIvFi------tHDLdEAlriG~rIaimkdG~ivQ~G  247 (386)
T COG4175         208 LELQAKLKKTIVFI------THDLDEALRIGDRIAIMKDGEIVQVG  247 (386)
T ss_pred             HHHHHHhCCeEEEE------ecCHHHHHhccceEEEecCCeEEEeC
Confidence            6665 4 9999999      99999999999994    56666544

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.97  E-value=5.3e-32  Score=212.41  Aligned_cols=153  Identities=17%  Similarity=0.223  Sum_probs=115.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..   .++.++|++|++.  +..+..+++.+.... 
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~---~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-  100 (220)
T cd03293          25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG---PGPDRGYVFQQDALLPWLTVLDNVALGLEL-  100 (220)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc---ccCcEEEEecccccccCCCHHHHHHHHHHH-
Confidence            5789999999999999999999999999999999999999987642   2467999999762  234555554332110 


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............+.++.+++.+.        +            ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~  180 (220)
T cd03293         101 QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE  180 (220)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            011111111223455666665432        1            7899999999999 6999999999999998874 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      ||+++++..+||++
T Consensus       181 ~~~tiii~------sH~~~~~~~~~d~i  202 (220)
T cd03293         181 TGKTVLLV------THDIDEAVFLADRV  202 (220)
T ss_pred             cCCEEEEE------ecCHHHHHHhCCEE
Confidence             8999999      99999999999983

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.97  E-value=3.7e-32  Score=212.26  Aligned_cols=156  Identities=16%  Similarity=0.241  Sum_probs=116.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|++|++  .+..+..+++.+
T Consensus        22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~  101 (214)
T cd03292          22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF  101 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHH
Confidence            57899999999999999999999999999999999999999876321     12346799999986  233455555433


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       102 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~  180 (214)
T cd03292         102 ALEV-TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLK  180 (214)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence            2110 001111111223345555555432        1            8899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      ||+.+.+..+||++
T Consensus       181 ~~~~~~~tiiiv------tH~~~~~~~~~d~i  206 (214)
T cd03292         181 KINKAGTTVVVA------THAKELVDTTRHRV  206 (214)
T ss_pred             HHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            8865 8999999      99999999999883

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=5.9e-32  Score=214.76  Aligned_cols=157  Identities=15%  Similarity=0.190  Sum_probs=117.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----ccCCceeeEEEeec--CCcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----RQGGQRVGFEVVTL--DDRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~--~~~~~~~~~~~~~   74 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...    ...++.++|++|++  .+..++.+++.+.
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  101 (240)
T PRK09493         22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG  101 (240)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhH
Confidence            57899999999999999999999999999999999999999886421    22346799999986  2334555554332


Q ss_pred             CCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      .................++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  181 (240)
T PRK09493        102 PLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD  181 (240)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            1100011111111223456666666432        1            7899999999999 69999999999999998


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++ |.|||++      ||+.+++..+||++
T Consensus       182 ~~~~~~tiii~------sH~~~~~~~~~d~i  206 (240)
T PRK09493        182 LAEEGMTMVIV------THEIGFAEKVASRL  206 (240)
T ss_pred             HHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            865 8999999      99999999999984

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.97  E-value=8.1e-32  Score=211.35  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=116.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.+.... ...+++++|+||++.  +..++.+++.+....
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  100 (220)
T cd03265          21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARL  100 (220)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999876321 223457999999862  233455544321110


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-  135 (193)
                       .............++++.+++...        +            ++.+|+++|+||| ++||+.++..+.++++.+. 
T Consensus       101 -~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  179 (220)
T cd03265         101 -YGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE  179 (220)
T ss_pred             -cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH
Confidence             001111111223455666666432        1            8899999999999 6999999999999998875 


Q ss_pred             C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      + |.|||++      |||.+++..+||++
T Consensus       180 ~~~~tvi~~------tH~~~~~~~~~d~i  202 (220)
T cd03265         180 EFGMTILLT------THYMEEAEQLCDRV  202 (220)
T ss_pred             hcCCEEEEE------eCCHHHHHHhCCEE
Confidence            4 8999999      99999999999983

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7e-32  Score=219.71  Aligned_cols=156  Identities=15%  Similarity=0.205  Sum_probs=118.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----ccCCceeeEEEeecC---CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLD---DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~---~~~~~~~~~~~   73 (193)
                      |+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++...    ...++.+||+||++.   ...++.+++.+
T Consensus        28 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~  107 (287)
T PRK13637         28 IEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAF  107 (287)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHh
Confidence            57899999999999999999999999999999999999999987432    233568999999862   12355555433


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccc--ccc--------------------cCCCCCEEEEecC-CCccccccchHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALP--ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAV  130 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~l  130 (193)
                      .... .............++++.+++.  ...                    ++.+|+++||||| ++||+.++..+.++
T Consensus       108 ~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~  186 (287)
T PRK13637        108 GPIN-LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK  186 (287)
T ss_pred             HHHH-CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH
Confidence            2111 0111111122344566776764  221                    8899999999999 69999999999999


Q ss_pred             HHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          131 LRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       131 l~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++.++ + |.|||++      |||++++..+||++
T Consensus       187 l~~l~~~~g~tvi~v------tHd~~~~~~~~drv  215 (287)
T PRK13637        187 IKELHKEYNMTIILV------SHSMEDVAKLADRI  215 (287)
T ss_pred             HHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            99885 4 8999999      99999999999994

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.4e-31  Score=209.10  Aligned_cols=156  Identities=12%  Similarity=0.168  Sum_probs=117.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++.  ...+..+++.+.....
T Consensus        19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~   98 (213)
T TIGR01277        19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG   98 (213)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhcc
Confidence            57899999999999999999999999999999999999999886433334567999999873  2345666654321111


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      . ...........+.++.+++.+..                    ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus        99 ~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~  177 (213)
T TIGR01277        99 L-KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE  177 (213)
T ss_pred             C-CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence            0 00101112234456666654321                    7899999999999 6999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      ||+.+++..+||++
T Consensus       178 ~~~tii~v------sh~~~~~~~~~d~v  199 (213)
T TIGR01277       178 RQRTLLMV------THHLSDARAIASQI  199 (213)
T ss_pred             cCCEEEEE------eCCHHHHHhhcCeE
Confidence             8999999      99999999999984

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.97  E-value=8.4e-32  Score=212.74  Aligned_cols=156  Identities=15%  Similarity=0.229  Sum_probs=116.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--c-CCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--Q-GGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~-~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|++.....  . .++.++|++|++  .+..++.+++.+..
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  100 (232)
T cd03218          21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVL  100 (232)
T ss_pred             eEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHH
Confidence            578999999999999999999999999999999999999998763221  1 234699999976  23345555543321


Q ss_pred             CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .. .............++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       101 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~  179 (232)
T cd03218         101 EI-RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL  179 (232)
T ss_pred             Hh-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence            10 011110111123345555555432        1            8899999999999 699999999999999988


Q ss_pred             hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+ |.|||++      |||++.+.++||++
T Consensus       180 ~~~~~tii~~------sH~~~~~~~~~d~i  203 (232)
T cd03218         180 KDRGIGVLIT------DHNVRETLSITDRA  203 (232)
T ss_pred             HHCCCEEEEE------eCCHHHHHHhCCEE
Confidence            76 8999999      99999999999984

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.97  E-value=6.9e-32  Score=211.65  Aligned_cols=156  Identities=12%  Similarity=0.144  Sum_probs=116.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.  ...+..+++.+... 
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~-  101 (220)
T cd03263          23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYAR-  101 (220)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHH-
Confidence            57899999999999999999999999999999999999999886421 223457999999762  23445555432110 


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~  181 (220)
T cd03263         102 LKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK  181 (220)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc
Confidence            0001111111223345555555432        1            8899999999999 69999999999999998876


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.|||++      ||+++.+.++||++
T Consensus       182 ~~tii~~------sH~~~~~~~~~d~i  202 (220)
T cd03263         182 GRSIILT------THSMDEAEALCDRI  202 (220)
T ss_pred             CCEEEEE------cCCHHHHHHhcCEE
Confidence            8899999      99999999999984

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.8e-31  Score=210.99  Aligned_cols=156  Identities=13%  Similarity=0.185  Sum_probs=117.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.......+.++|+||++  .+..+..+++.+.....
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~   99 (232)
T PRK10771         20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG   99 (232)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc
Confidence            5789999999999999999999999999999999999999988643322345799999986  23345566654332110


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      ... .........+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+. +
T Consensus       100 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~  178 (232)
T PRK10771        100 LKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE  178 (232)
T ss_pred             cCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            000 11111234456666666432        1            8899999999999 6999999999999998874 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      |||.+++.++||++
T Consensus       179 ~~~tiii~------sH~~~~~~~~~d~i  200 (232)
T PRK10771        179 RQLTLLMV------SHSLEDAARIAPRS  200 (232)
T ss_pred             cCCEEEEE------ECCHHHHHHhCCEE
Confidence             8999999      99999999999984

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7e-32  Score=224.56  Aligned_cols=156  Identities=15%  Similarity=0.253  Sum_probs=118.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...     ...++++||+||++.  +..++.+++.+
T Consensus        26 l~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~  105 (343)
T PRK11153         26 LHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL  105 (343)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHH
Confidence            57899999999999999999999999999999999999999986432     123567999999863  33456666543


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............+.++.+++....                    ++.+|+++||||| ++||+.++..+.++++
T Consensus       106 ~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~  184 (343)
T PRK11153        106 PLEL-AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK  184 (343)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            2110 1111111112334566666664321                    8899999999999 6999999999999999


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |+|||++      |||++++.++||++
T Consensus       185 ~l~~~~g~tiilv------tH~~~~i~~~~d~v  211 (343)
T PRK11153        185 DINRELGLTIVLI------THEMDVVKRICDRV  211 (343)
T ss_pred             HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            875 4 8999999      99999999999984

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.97  E-value=1.2e-31  Score=212.89  Aligned_cols=157  Identities=17%  Similarity=0.262  Sum_probs=116.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|+||++  .+..++.+++.+
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  101 (241)
T cd03256          22 LSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS  101 (241)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHh
Confidence            57899999999999999999999999999999999999999876432     12346799999986  233455555443


Q ss_pred             CCCCC-------CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421           74 SSPES-------YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        74 ~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .....       .............+.++.+++...        +            ++.+|+++||||| ++||+.++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~  181 (241)
T cd03256         102 GRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSR  181 (241)
T ss_pred             hhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence            22110       000001111223345566665432        1            8899999999999 699999999


Q ss_pred             hHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+. + |.|||++      |||++++..+||++
T Consensus       182 ~l~~~l~~~~~~~~~tii~~------tH~~~~~~~~~d~v  215 (241)
T cd03256         182 QVMDLLKRINREEGITVIVS------LHQVDLAREYADRI  215 (241)
T ss_pred             HHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            9999998875 4 8999999      99999999999984

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.4e-31  Score=212.79  Aligned_cols=157  Identities=13%  Similarity=0.189  Sum_probs=115.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--------hhccCCceeeEEEeecC--Cccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--------EIRQGGQRVGFEVVTLD--DRRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--------~~~~~~~~ig~~~q~~~--~~~~~~~~   70 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.        .....++.++|++|++.  +..+..++
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~  102 (242)
T PRK11124         23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN  102 (242)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHH
Confidence            578999999999999999999999999999999999999998752        11123457999999762  23455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      +....................+.++.+++...        +            ++.+|+++||||| ++||+.++..+.+
T Consensus       103 i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~  182 (242)
T PRK11124        103 LIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS  182 (242)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH
Confidence            43211000000110111223445555555432        1            7899999999999 6999999999999


Q ss_pred             HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+++ |.|+|++      |||..++..+||++
T Consensus       183 ~l~~~~~~~~tii~~------sh~~~~~~~~~d~i  211 (242)
T PRK11124        183 IIRELAETGITQVIV------THEVEVARKTASRV  211 (242)
T ss_pred             HHHHHHHcCCEEEEE------eCCHHHHHHhcCEE
Confidence            9998876 9999999      99999999999983

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.97  E-value=8e-32  Score=213.05  Aligned_cols=156  Identities=17%  Similarity=0.273  Sum_probs=116.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|+||++.  +..+..+++.+
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~  105 (233)
T cd03258          26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL  105 (233)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHH
Confidence            57899999999999999999999999999999999999999886422     122467999999862  23455555433


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............+.++.+++.+.        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       106 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~  184 (233)
T cd03258         106 PLEI-AGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLR  184 (233)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHH
Confidence            2110 011111111223455666665432        1            8899999999999 6999999999999998


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++ + |.|||++      ||+.+.+..+||++
T Consensus       185 ~~~~~~~~tvii~------sH~~~~~~~~~d~i  211 (233)
T cd03258         185 DINRELGLTIVLI------THEMEVVKRICDRV  211 (233)
T ss_pred             HHHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            875 4 8999999      99999999999984

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=8.4e-32  Score=217.91  Aligned_cols=156  Identities=16%  Similarity=0.204  Sum_probs=117.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC---CcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD---DRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~---~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.+||+||++.   ...++.+++.+..
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~  105 (274)
T PRK13647         26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGP  105 (274)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhH
Confidence            57899999999999999999999999999999999999999886422  223457999999752   2335555554321


Q ss_pred             CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .. .............++++.+++....                    ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       106 ~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  184 (274)
T PRK13647        106 VN-MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL  184 (274)
T ss_pred             HH-cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            10 0111111112234556666664321                    8899999999999 699999999999999988


Q ss_pred             hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++ |.|||++      |||++.+.++||++
T Consensus       185 ~~~g~tili~------tH~~~~~~~~~d~i  208 (274)
T PRK13647        185 HNQGKTVIVA------THDVDLAAEWADQV  208 (274)
T ss_pred             HHCCCEEEEE------eCCHHHHHHhCCEE
Confidence            65 9999999      99999999999994

>PRK10908 cell division protein FtsE; Provisional

Probab=99.97  E-value=1e-31  Score=211.00  Aligned_cols=156  Identities=15%  Similarity=0.155  Sum_probs=116.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|++|++.  ...+..+++.+
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  102 (222)
T PRK10908         23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI  102 (222)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHh
Confidence            57899999999999999999999999999999999999999876421     123467999999863  33455555443


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       103 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  181 (222)
T PRK10908        103 PLII-AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE  181 (222)
T ss_pred             HHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence            2110 001111111123345566555332        1            7899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|+|++      |||++++..+||++
T Consensus       182 ~~~~~~~tiii~------sH~~~~~~~~~d~i  207 (222)
T PRK10908        182 EFNRVGVTVLMA------THDIGLISRRSYRM  207 (222)
T ss_pred             HHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence            8865 8999999      99999999999983

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2e-31  Score=203.04  Aligned_cols=156  Identities=13%  Similarity=0.148  Sum_probs=118.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC-----CCeEEeceEchh----hccCCceeeEEEeecCCc-cccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN-----PSLKVQGFYTGE----IRQGGQRVGFEVVTLDDR-RAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~-----G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~~-~~~~~~   70 (193)
                      ++|++++++|++||||||||||||+++.+.....     |+|.++|+++..    ....|+++|++||.|+++ ++.++|
T Consensus        28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydN  107 (253)
T COG1117          28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDN  107 (253)
T ss_pred             eeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHH
Confidence            5789999999999999999999999999977654     999999998743    234578999999988443 677888


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhc---------------ccc---------cccCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIA---------------LPE---------LQVGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------l~~---------~~l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+......... ....+.+...++..+               ++.         ..++.+|++|||||| ++|||.+..
T Consensus       108 VayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~  186 (253)
T COG1117         108 VAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTL  186 (253)
T ss_pred             HHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHH
Confidence            766543211111 111111222222111               110         018899999999999 799999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+++..+++..||++|      ||++..+.+++|+.
T Consensus       187 kIEeLi~eLk~~yTIviV------THnmqQAaRvSD~t  218 (253)
T COG1117         187 KIEELITELKKKYTIVIV------THNMQQAARVSDYT  218 (253)
T ss_pred             HHHHHHHHHHhccEEEEE------eCCHHHHHHHhHhh
Confidence            999999999999999999      99999999999983

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.97  E-value=1.4e-31  Score=213.71  Aligned_cols=157  Identities=16%  Similarity=0.190  Sum_probs=116.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----------ccCCceeeEEEeec--CCccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----------RQGGQRVGFEVVTL--DDRRAPL   68 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----------~~~~~~ig~~~q~~--~~~~~~~   68 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...          ...++.++|++|++  .+..+..
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~  103 (250)
T PRK11264         24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVL  103 (250)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHH
Confidence            67899999999999999999999999999999999999999876321          12345799999986  2234555


Q ss_pred             ccccCCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchH
Q 029421           69 ASINASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFF  127 (193)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~  127 (193)
                      +++.+..................+.++.+++...        +            ++.+|+++||||| ++||+.++..+
T Consensus       104 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l  183 (250)
T PRK11264        104 ENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEV  183 (250)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence            5543311000001111111223445566665432        1            7899999999999 69999999999


Q ss_pred             HHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          128 PAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       128 ~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++++.+.+ |.|||++      |||.+++.++||++
T Consensus       184 ~~~l~~~~~~~~tvi~~------tH~~~~~~~~~d~i  214 (250)
T PRK11264        184 LNTIRQLAQEKRTMVIV------THEMSFARDVADRA  214 (250)
T ss_pred             HHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence            999998876 9999999      99999999999984

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-31  Score=211.99  Aligned_cols=157  Identities=14%  Similarity=0.200  Sum_probs=117.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecC--CcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD--DRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~--~~~~~~~~~~~~~   75 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....   ..++.++|++|++.  ...+..+++.+..
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  103 (241)
T PRK10895         24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVL  103 (241)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhh
Confidence            678999999999999999999999999999999999999998864221   12457999999862  2345566654321


Q ss_pred             CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      ................+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  183 (241)
T PRK10895        104 QIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL  183 (241)
T ss_pred             hcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            100000111111223445555555432        1            8899999999999 699999999999999888


Q ss_pred             hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++ |.|||++      ||+.+.+..+||++
T Consensus       184 ~~~g~tiii~------sH~~~~~~~~~d~v  207 (241)
T PRK10895        184 RDSGLGVLIT------DHNVRETLAVCERA  207 (241)
T ss_pred             HhcCCEEEEE------EcCHHHHHHhcCEE
Confidence            76 9999999      99999999999984

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.97  E-value=1.7e-31  Score=209.64  Aligned_cols=154  Identities=16%  Similarity=0.189  Sum_probs=113.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....   ..++.++|+||++  .+..+..+++.+..
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~  100 (222)
T cd03224          21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGA  100 (222)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHh
Confidence            578999999999999999999999999999999999999998764221   1245699999986  23345555543322


Q ss_pred             CCCCCCCcccceeeehhhhhhh-cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAI-ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~-~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      ... .  .........+.++.+ ++..        ++            ++.+|+++||||| ++||+.++..+.++++.
T Consensus       101 ~~~-~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  177 (222)
T cd03224         101 YAR-R--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE  177 (222)
T ss_pred             hhc-C--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence            111 0  000111112233333 2221        11            8899999999999 69999999999999998


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++ |.|||++      |||.+++.++||++
T Consensus       178 ~~~~~~tiii~------sH~~~~~~~~~d~i  202 (222)
T cd03224         178 LRDEGVTILLV------EQNARFALEIADRA  202 (222)
T ss_pred             HHHCCCEEEEE------eCCHHHHHHhccEE
Confidence            875 8999999      99999999999983

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=9.9e-32  Score=220.35  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=117.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--------------------------hhccCCcee
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--------------------------EIRQGGQRV   54 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--------------------------~~~~~~~~i   54 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|++..                          .....++.+
T Consensus        28 l~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  107 (305)
T PRK13651         28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRV  107 (305)
T ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhce
Confidence            578999999999999999999999999999999999999987541                          112235679


Q ss_pred             eEEEeecC---CcccccccccCCCCCCCCCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCE
Q 029421           55 GFEVVTLD---DRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDL  110 (193)
Q Consensus        55 g~~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~l  110 (193)
                      ||+||++.   ...++.+++.+.... .............+.++.+++. .+.                    ++.+|++
T Consensus       108 g~v~Q~~~~~l~~~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~l  186 (305)
T PRK13651        108 GVVFQFAEYQLFEQTIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDF  186 (305)
T ss_pred             EEEeeCcccccccccHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence            99999752   123455554332111 1111111123345667777774 221                    8899999


Q ss_pred             EEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          111 FVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       111 lllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |||||| ++||+.++..+.++++.+++ |.|||++      |||++.+.++||++
T Consensus       187 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv------tHd~~~~~~~adrv  235 (305)
T PRK13651        187 LVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILV------THDLDNVLEWTKRT  235 (305)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE------eeCHHHHHHhCCEE
Confidence            999999 69999999999999998876 9999999      99999999999994

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.97  E-value=1.4e-31  Score=216.06  Aligned_cols=157  Identities=17%  Similarity=0.259  Sum_probs=116.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|+||++.  +..+..+++.+
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~  107 (269)
T PRK11831         28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY  107 (269)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHH
Confidence            57899999999999999999999999999999999999999876321     122456999999862  23355555433


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ..................+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  187 (269)
T PRK11831        108 PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLIS  187 (269)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence            21100001111111223345666666532        1            7899999999999 6999999999999999


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |.|||++      |||++++.++||++
T Consensus       188 ~~~~~~g~tiiiv------sH~~~~~~~~~d~v  214 (269)
T PRK11831        188 ELNSALGVTCVVV------SHDVPEVLSIADHA  214 (269)
T ss_pred             HHHHhcCcEEEEE------ecCHHHHHHhhCEE
Confidence            875 4 8999999      99999999999984

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.6e-31  Score=213.01  Aligned_cols=152  Identities=19%  Similarity=0.275  Sum_probs=115.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...   ...++|++|++.  +..++.+++.+... .
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~v~q~~~~~~~~tv~e~l~~~~~-~   97 (255)
T PRK11248         22 LTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP---GAERGVVFQNEGLLPWRNVQDNVAFGLQ-L   97 (255)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---CCcEEEEeCCCccCCCCcHHHHHHhHHH-H
Confidence            57899999999999999999999999999999999999999886431   245899999862  23455555433211 0


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH-hC
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL-ES  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l-~~  136 (193)
                      .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+ ++
T Consensus        98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~  177 (255)
T PRK11248         98 AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE  177 (255)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence            011111111223456666665432        1            7899999999999 699999999999999887 44


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                       |.|||++      |||++++..+||+
T Consensus       178 ~g~tviiv------sH~~~~~~~~~d~  198 (255)
T PRK11248        178 TGKQVLLI------THDIEEAVFMATE  198 (255)
T ss_pred             cCCEEEEE------eCCHHHHHHhCCE
Confidence             8999999      9999999999998

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.97  E-value=3.5e-31  Score=208.61  Aligned_cols=157  Identities=13%  Similarity=0.162  Sum_probs=114.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc-----ccCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL-----KASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~-----~~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|++     +|++|+|.++|+++...    ...++.++|++|++.. ..++.++
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~  100 (227)
T cd03260          21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDN  100 (227)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHH
Confidence            578999999999999999999999999999     99999999999886432    2335679999998621 3455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc----------ccc------------cCCCCCEEEEecC-CCccccccchH
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP----------ELQ------------VGADTDLFVIDEV-GKMELFSSSFF  127 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~------------l~~~p~llllDEp-~~LD~~~~~~~  127 (193)
                      +.+..................+.++.+++.          .++            ++.+|+++||||| ++||+.++..+
T Consensus       101 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l  180 (227)
T cd03260         101 VAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI  180 (227)
T ss_pred             HHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence            443221110000000111223344444432          122            7899999999999 69999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          128 PAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++++.+++..|||++      |||++++.++||++
T Consensus       181 ~~~l~~~~~~~tii~~------sH~~~~~~~~~d~i  210 (227)
T cd03260         181 EELIAELKKEYTIVIV------THNMQQAARVADRT  210 (227)
T ss_pred             HHHHHHHhhCcEEEEE------eccHHHHHHhCCEE
Confidence            9999987545899999      99999999999983

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.7e-31  Score=225.39  Aligned_cols=156  Identities=13%  Similarity=0.238  Sum_probs=119.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++....      ..++++||+||++  ++..+..+++.
T Consensus        49 l~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~  128 (400)
T PRK10070         49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTA  128 (400)
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHH
Confidence            579999999999999999999999999999999999999999864321      1235799999986  33456666654


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +.... ..+..........++++.+++....                    ++.+|++|||||| ++||+.++..+.+++
T Consensus       129 ~~~~~-~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L  207 (400)
T PRK10070        129 FGMEL-AGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDEL  207 (400)
T ss_pred             HHHHh-cCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            43211 1111111122344567777765331                    8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+. + |+|||++      |||++++.++||++
T Consensus       208 ~~l~~~~g~TIIiv------THd~~~~~~~~Dri  235 (400)
T PRK10070        208 VKLQAKHQRTIVFI------SHDLDEAMRIGDRI  235 (400)
T ss_pred             HHHHHHCCCeEEEE------ECCHHHHHHhCCEE
Confidence            8875 4 8999999      99999999999984

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.2e-31  Score=218.37  Aligned_cols=156  Identities=13%  Similarity=0.239  Sum_probs=117.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC---Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD---DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~---~~~~~~~~~   71 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++..      ....+..+||+||++.   ...++.+++
T Consensus        28 l~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l  107 (287)
T PRK13641         28 FELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDV  107 (287)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHH
Confidence            5789999999999999999999999999999999999999988632      1223457999999752   123455554


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      .+.... .............++++.+++. .+        +            ++.+|++|||||| ++||+.++..+.+
T Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~  186 (287)
T PRK13641        108 EFGPKN-FGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ  186 (287)
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH
Confidence            321110 0011111112344566666664 22        1            8899999999999 6999999999999


Q ss_pred             HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+++ |.|||++      |||++++.++||++
T Consensus       187 ~l~~l~~~g~tvliv------sH~~~~~~~~~d~v  215 (287)
T PRK13641        187 LFKDYQKAGHTVILV------THNMDDVAEYADDV  215 (287)
T ss_pred             HHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence            9998875 9999999      99999999999984

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.97  E-value=1.9e-31  Score=213.93  Aligned_cols=157  Identities=14%  Similarity=0.193  Sum_probs=117.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---------------hccCCceeeEEEeecC--C
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---------------IRQGGQRVGFEVVTLD--D   63 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---------------~~~~~~~ig~~~q~~~--~   63 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..               ....++.++|++|++.  +
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~  105 (257)
T PRK10619         26 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS  105 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCC
Confidence            5789999999999999999999999999999999999999987531               1123467999999863  2


Q ss_pred             cccccccccCCCCCCCCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccc
Q 029421           64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMEL  121 (193)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~  121 (193)
                      ..+..+++.+..................+.++.+++...         +            ++.+|+++||||| ++||+
T Consensus       106 ~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  185 (257)
T PRK10619        106 HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP  185 (257)
T ss_pred             CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            345566643311000011111111223455666665432         1            8899999999999 69999


Q ss_pred             cccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          122 FSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       122 ~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++..+.++++.+++ |.|||++      |||.+++..+||++
T Consensus       186 ~~~~~l~~~l~~l~~~g~tiiiv------sH~~~~~~~~~d~i  222 (257)
T PRK10619        186 ELVGEVLRIMQQLAEEGKTMVVV------THEMGFARHVSSHV  222 (257)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence            999999999998876 9999999      99999999999984

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=7.5e-31  Score=195.52  Aligned_cols=156  Identities=13%  Similarity=0.165  Sum_probs=126.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      ++|+.||+++|+||||||||||+++|+|...|.+|+|+++|.+........+-++++||+.  +...++.+|+.+.....
T Consensus        20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~   99 (231)
T COG3840          20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG   99 (231)
T ss_pred             EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence            4688999999999999999999999999999999999999999765555566788999976  44567777776655433


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                      ..... ...+.....+.++|+..+.                    ++.+-++++|||| ++|||..|.++..++..++. 
T Consensus       100 LkL~a-~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E  178 (231)
T COG3840         100 LKLNA-EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE  178 (231)
T ss_pred             cccCH-HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence            33222 2223445666777776442                    7889999999999 89999999999999999864 


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       +.|++||      ||..+++.++++++
T Consensus       179 ~~~TllmV------TH~~~Da~~ia~~~  200 (231)
T COG3840         179 RKMTLLMV------THHPEDAARIADRV  200 (231)
T ss_pred             hCCEEEEE------eCCHHHHHHhhhce
Confidence             9999999      99999999999983

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3e-31  Score=216.11  Aligned_cols=156  Identities=15%  Similarity=0.237  Sum_probs=116.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC---Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD---DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~---~~~~~~~~~   71 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..      ....++.+||+||++.   ...++.+++
T Consensus        27 l~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l  106 (288)
T PRK13643         27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV  106 (288)
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHH
Confidence            5789999999999999999999999999999999999999998631      1233567999999752   113445554


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      .+.... .............+.++.+++. .+        +            ++.+|+++||||| ++||+.++..+.+
T Consensus       107 ~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~  185 (288)
T PRK13643        107 AFGPQN-FGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ  185 (288)
T ss_pred             HhHHHH-cCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH
Confidence            332111 1111111112234556666663 22        1            8899999999999 6999999999999


Q ss_pred             HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+++ |.|||++      |||++++..+||++
T Consensus       186 ~l~~l~~~g~til~v------tHd~~~~~~~~dri  214 (288)
T PRK13643        186 LFESIHQSGQTVVLV------THLMDDVADYADYV  214 (288)
T ss_pred             HHHHHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence            9998876 9999999      99999999999984

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.3e-31  Score=210.58  Aligned_cols=154  Identities=16%  Similarity=0.189  Sum_probs=114.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cC-CceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QG-GQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~-~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++....     .. ++.++|++|++  .+..+..+++.
T Consensus        30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  109 (233)
T PRK11629         30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVA  109 (233)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHH
Confidence            678999999999999999999999999999999999999998864321     11 25699999986  22345555543


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +... ..............+.++.+++.+..                    ++.+|+++||||| ++||+.++..+.+++
T Consensus       110 ~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  188 (233)
T PRK11629        110 MPLL-IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL  188 (233)
T ss_pred             HHHH-hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            3211 00111111112344566666664321                    7899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.++ + |.|||++      |||++++..+ ++
T Consensus       189 ~~~~~~~g~tvii~------sH~~~~~~~~-~~  214 (233)
T PRK11629        189 GELNRLQGTAFLVV------THDLQLAKRM-SR  214 (233)
T ss_pred             HHHHHhCCCEEEEE------eCCHHHHHhh-CE
Confidence            9875 3 8999999      9999988765 45

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.97  E-value=2.7e-31  Score=214.40  Aligned_cols=156  Identities=15%  Similarity=0.273  Sum_probs=116.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeecC--Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTLD--DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~~--~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....      ..++.++|++|++.  +..++.+++.
T Consensus        45 ~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~  124 (269)
T cd03294          45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVA  124 (269)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHH
Confidence            578999999999999999999999999999999999999998764221      11357999999862  2345555543


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +.... .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.+++
T Consensus       125 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l  203 (269)
T cd03294         125 FGLEV-QGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL  203 (269)
T ss_pred             HHHHh-cCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            32110 001111111223455666666432        1            8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+. + |.|||++      |||++++.++||++
T Consensus       204 ~~~~~~~g~tiii~------tH~~~~~~~~~d~v  231 (269)
T cd03294         204 LRLQAELQKTIVFI------THDLDEALRLGDRI  231 (269)
T ss_pred             HHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence            8875 4 8999999      99999999999984

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.97  E-value=1.6e-31  Score=221.25  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=118.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec----CCcccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL----DDRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~----~~~~~~~~~~   71 (193)
                      |+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...     +..+++++|+||++    ++..+..+++
T Consensus        42 l~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i  121 (331)
T PRK15079         42 LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEII  121 (331)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHH
Confidence            57899999999999999999999999999999999999999986432     22346799999986    2234444544


Q ss_pred             cCCCCCCC-CCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           72 NASSPESY-RWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        72 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      .+...... ............+.++.+++.. .        +            ++.+|++||+||| ++||+.++..+.
T Consensus       122 ~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~  201 (331)
T PRK15079        122 AEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV  201 (331)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            32111000 0111111223345666666631 1        1            8899999999999 699999999999


Q ss_pred             HHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+.+  |.|+|++      |||+..+.++||++
T Consensus       202 ~lL~~l~~~~~~til~i------THdl~~~~~~~dri  232 (331)
T PRK15079        202 NLLQQLQREMGLSLIFI------AHDLAVVKHISDRV  232 (331)
T ss_pred             HHHHHHHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            99998754  8999999      99999999999995

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.1e-31  Score=219.24  Aligned_cols=150  Identities=16%  Similarity=0.201  Sum_probs=117.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..      ....++.++|+||++  ++..++.+++.
T Consensus        19 l~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~   98 (352)
T PRK11144         19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR   98 (352)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHH
Confidence            5789999999999999999999999999999999999999987632      123356799999986  33456666654


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +....       .......+.++.+++..+.                    ++.+|+++||||| ++||+.++..+.+++
T Consensus        99 ~~~~~-------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L  171 (352)
T PRK11144         99 YGMAK-------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL  171 (352)
T ss_pred             hhhhh-------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            42210       0112234556666664321                    8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+. + |.|+|++      |||.+++..+||++
T Consensus       172 ~~l~~~~g~tii~v------THd~~~~~~~~d~i  199 (352)
T PRK11144        172 ERLAREINIPILYV------SHSLDEILRLADRV  199 (352)
T ss_pred             HHHHHhcCCeEEEE------ecCHHHHHHhCCEE
Confidence            8875 4 8999999      99999999999984

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=5.9e-31  Score=202.79  Aligned_cols=155  Identities=12%  Similarity=0.135  Sum_probs=119.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |++++||+++|+||||+|||||||+|+|+.++.+|+|.++|+++...   ...+..++|+||.-  ++.+++.+|+....
T Consensus        24 l~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~  103 (237)
T COG0410          24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGA  103 (237)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhh
Confidence            67899999999999999999999999999999999999999998543   34467899999965  67788888876543


Q ss_pred             CCCCCCCcccceeeehhhhhhhc-c--------cccc------------cCCCCCEEEEecCC-CccccccchHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIA-L--------PELQ------------VGADTDLFVIDEVG-KMELFSSSFFPAVLRI  133 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~-l--------~~~~------------l~~~p~llllDEp~-~LD~~~~~~~~~ll~~  133 (193)
                      .....  .........+.++.+. +        ..++            |+.+|++|+||||+ ||-|.-.+++.+.++.
T Consensus       104 ~~~~~--~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~  181 (237)
T COG0410         104 YARRD--KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE  181 (237)
T ss_pred             hcccc--cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHH
Confidence            21111  0000111122222221 0        0111            88999999999995 9999999999999999


Q ss_pred             HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++  |.||++|      .++...+.+++|+.
T Consensus       182 l~~~~g~tIlLV------EQn~~~Al~iaDr~  207 (237)
T COG0410         182 LRKEGGMTILLV------EQNARFALEIADRG  207 (237)
T ss_pred             HHHcCCcEEEEE------eccHHHHHHhhCEE
Confidence            874  8899999      99999999999993

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.4e-31  Score=216.83  Aligned_cols=156  Identities=14%  Similarity=0.207  Sum_probs=117.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC---Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD---DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~---~~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++..      ....++.+||+||++.   ...++.+++
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni  107 (290)
T PRK13634         28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDI  107 (290)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHH
Confidence            5789999999999999999999999999999999999999998632      1233567999999752   123555554


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      .+.... .............++++.+++. .+.                    ++.+|+++||||| ++||+.++..+.+
T Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~  186 (290)
T PRK13634        108 CFGPMN-FGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME  186 (290)
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence            332111 0111111112344566666764 221                    8899999999999 6999999999999


Q ss_pred             HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+. + |.|||++      |||++++.++||++
T Consensus       187 ~L~~l~~~~g~tviii------tHd~~~~~~~~drv  216 (290)
T PRK13634        187 MFYKLHKEKGLTTVLV------THSMEDAARYADQI  216 (290)
T ss_pred             HHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            998885 4 8999999      99999999999984

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.97  E-value=3.1e-31  Score=205.90  Aligned_cols=155  Identities=14%  Similarity=0.190  Sum_probs=113.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeecC--Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTLD--DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~--~~~~~~~~~~   72 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...      ...++.++|++|++.  +..+..+++.
T Consensus        19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~   98 (206)
T TIGR03608        19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD   98 (206)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHH
Confidence            57899999999999999999999999999999999999999884211      123467999999862  2345555543


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +.... .............+.++.+++....                    ++.+|+++||||| ++||+.++..+.+++
T Consensus        99 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  177 (206)
T TIGR03608        99 LGLKY-KKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLL  177 (206)
T ss_pred             HHHHh-cCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence            32110 0011111112234556666654321                    8899999999999 699999999999999


Q ss_pred             HHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+.+ |.|||++      ||+.+.+ .+||++
T Consensus       178 ~~~~~~~~tii~~------sh~~~~~-~~~d~i  203 (206)
T TIGR03608       178 LELNDEGKTIIIV------THDPEVA-KQADRV  203 (206)
T ss_pred             HHHHhcCCEEEEE------eCCHHHH-hhcCEE
Confidence            98865 8999999      9998765 578763

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.5e-31  Score=216.37  Aligned_cols=156  Identities=19%  Similarity=0.265  Sum_probs=117.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC---Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD---DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~---~~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..      ....++.+||+||++.   ...++.+++
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i  107 (286)
T PRK13646         28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREI  107 (286)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHH
Confidence            5789999999999999999999999999999999999999988632      1234567999999752   112455554


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      .+.... .............++++.+++. ...                    ++.+|+++||||| ++||+.++..+.+
T Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~  186 (286)
T PRK13646        108 IFGPKN-FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR  186 (286)
T ss_pred             HhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence            432111 0111111112344566666664 221                    8899999999999 6999999999999


Q ss_pred             HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+. + |.|||++      |||++++..+||++
T Consensus       187 ~l~~l~~~~g~tvl~v------tH~~~~~~~~~dri  216 (286)
T PRK13646        187 LLKSLQTDENKTIILV------SHDMNEVARYADEV  216 (286)
T ss_pred             HHHHHHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence            999875 4 8999999      99999999999984

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.97  E-value=4.4e-31  Score=207.23  Aligned_cols=154  Identities=14%  Similarity=0.180  Sum_probs=112.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cC-CceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QG-GQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~-~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....     .. ++.++|++|++  .+..+..+++.
T Consensus        26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~  105 (221)
T TIGR02211        26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA  105 (221)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHH
Confidence            578999999999999999999999999999999999999998864321     11 25699999986  23345555543


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +.... .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.+++
T Consensus       106 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l  184 (221)
T TIGR02211       106 MPLLI-GKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM  184 (221)
T ss_pred             HHHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            32110 001111111223455666666432        1            8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.+. + |.|||++      |||++.+.. +|+
T Consensus       185 ~~~~~~~~~tii~~------tH~~~~~~~-~d~  210 (221)
T TIGR02211       185 LELNRELNTSFLVV------THDLELAKK-LDR  210 (221)
T ss_pred             HHHHHhcCCEEEEE------eCCHHHHhh-cCE
Confidence            8875 4 8999999      999988754 676

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.97  E-value=6.2e-31  Score=209.06  Aligned_cols=157  Identities=16%  Similarity=0.199  Sum_probs=117.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....   ..++.++|++|++  .+..++.+++.+..
T Consensus        23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~  102 (242)
T TIGR03411        23 LYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELAL  102 (242)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhh
Confidence            678999999999999999999999999999999999999998763221   1234699999986  33345566544321


Q ss_pred             CCCCC-------CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchH
Q 029421           76 PESYR-------WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFF  127 (193)
Q Consensus        76 ~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~  127 (193)
                      .....       ...........+.++.+++....                    ++.+|+++||||| ++||+.++..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l  182 (242)
T TIGR03411       103 PRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKT  182 (242)
T ss_pred             hcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH
Confidence            10000       00001112234556666664321                    8899999999999 69999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          128 PAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++++.+.++.|||++      ||+.+++.++||++
T Consensus       183 ~~~l~~~~~~~tii~~------sH~~~~~~~~~d~i  212 (242)
T TIGR03411       183 AELLKSLAGKHSVVVV------EHDMEFVRSIADKV  212 (242)
T ss_pred             HHHHHHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence            9999988768899999      99999999999984

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.97  E-value=4.8e-31  Score=207.77  Aligned_cols=157  Identities=18%  Similarity=0.229  Sum_probs=114.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC----Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD----DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~----~~~~~~~~~   71 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|++|++.    +..++.+++
T Consensus        26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl  105 (228)
T cd03257          26 FSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI  105 (228)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHH
Confidence            57899999999999999999999999999999999999999886432     233567999999862    223444554


Q ss_pred             cCCCCCCCCCCcccceee-ehhhhhhhccc-c--------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           72 NASSPESYRWPTVGRYKV-DVASFEAIALP-E--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~-~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      .+................ ..+.++.+++. .        ++            ++.+|+++||||| ++||+.++..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~  185 (228)
T cd03257         106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL  185 (228)
T ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence            321110000000000011 12444555552 1        11            8899999999999 699999999999


Q ss_pred             HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+. + |.|||++      |||++.+..+||++
T Consensus       186 ~~l~~~~~~~~~tii~~------sH~~~~~~~~~d~i  216 (228)
T cd03257         186 DLLKKLQEELGLTLLFI------THDLGVVAKIADRV  216 (228)
T ss_pred             HHHHHHHHHcCCEEEEE------eCCHHHHHHhcCeE
Confidence            9998875 4 8999999      99999999999984

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.97  E-value=4.6e-31  Score=212.62  Aligned_cols=157  Identities=16%  Similarity=0.170  Sum_probs=115.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cCCceeeEEEeecC----Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QGGQRVGFEVVTLD----DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~~~~ig~~~q~~~----~~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....     ..++.++|++|++.    +..++.+++
T Consensus        32 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l  111 (265)
T TIGR02769        32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII  111 (265)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHH
Confidence            678999999999999999999999999999999999999998864221     13467999999751    223444443


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      .+..................+.++.+++. .+        +            ++.+|++|||||| ++||+.++..+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~  191 (265)
T TIGR02769       112 GEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE  191 (265)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            22110000011111112334566666663 22        1            8899999999999 6999999999999


Q ss_pred             HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+. + |.|||++      |||++.+..+||++
T Consensus       192 ~l~~~~~~~g~tiiiv------sH~~~~~~~~~d~i  221 (265)
T TIGR02769       192 LLRKLQQAFGTAYLFI------THDLRLVQSFCQRV  221 (265)
T ss_pred             HHHHHHHhcCcEEEEE------eCCHHHHHHHhcEE
Confidence            998875 4 8999999      99999999999984

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.97  E-value=1.9e-31  Score=204.82  Aligned_cols=148  Identities=20%  Similarity=0.261  Sum_probs=107.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC---CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD---DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~---~~~~~~~~~~~   73 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..    ....++.++|++|++.   ...+..+++.+
T Consensus        13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~   92 (190)
T TIGR01166        13 FAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAF   92 (190)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHH
Confidence            5799999999999999999999999999999999999999988631    1123457999999852   12344555433


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............+.++.+++....                    ++.+|+++||||| ++||+.++..+.++++
T Consensus        93 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~  171 (190)
T TIGR01166        93 GPLN-LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR  171 (190)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            2110 0011111111233455555554321                    8899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhH
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~  155 (193)
                      .+++ |.|||++      |||+++
T Consensus       172 ~~~~~~~tili~------sH~~~~  189 (190)
T TIGR01166       172 RLRAEGMTVVIS------THDVDL  189 (190)
T ss_pred             HHHHcCCEEEEE------eecccc
Confidence            8866 8999999      998764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.97  E-value=5.3e-31  Score=221.08  Aligned_cols=156  Identities=17%  Similarity=0.217  Sum_probs=119.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE----chh-----hcc-CCceeeEEEeec--CCccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY----TGE-----IRQ-GGQRVGFEVVTL--DDRRAPL   68 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~----~~~-----~~~-~~~~ig~~~q~~--~~~~~~~   68 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++    +..     .+. .+++++|+||++  ++..++.
T Consensus        45 f~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~  124 (382)
T TIGR03415        45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVE  124 (382)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHH
Confidence            6799999999999999999999999999999999999999963    211     111 235799999987  3445677


Q ss_pred             ccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchH
Q 029421           69 ASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFF  127 (193)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~  127 (193)
                      +|+.+.... .............+.++.+++..+.                    ++.+|+++||||| ++||+.++..+
T Consensus       125 eNi~~~~~~-~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l  203 (382)
T TIGR03415       125 ENVAFGLEM-QGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQL  203 (382)
T ss_pred             HHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHH
Confidence            776543211 1111111223345677777775432                    8899999999999 79999999999


Q ss_pred             HHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          128 PAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       128 ~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++..+.+  |+|||++      |||++++.++||++
T Consensus       204 ~~~L~~l~~~~~~TII~i------THdl~e~~~l~DrI  235 (382)
T TIGR03415       204 QDELLELQAKLNKTIIFV------SHDLDEALKIGNRI  235 (382)
T ss_pred             HHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            998888753  8999999      99999999999994

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.97  E-value=4.7e-31  Score=210.45  Aligned_cols=157  Identities=13%  Similarity=0.188  Sum_probs=115.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-----NPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-----~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++|+     +|+|.++|.++..    ....++.++|+||++.. ..+..++
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~  101 (247)
T TIGR00972        22 LDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDN  101 (247)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHH
Confidence            678999999999999999999999999999998     9999999988642    12235679999998621 1455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc----c--------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP----E--------LQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~--------~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.    .        ++            ++.+|+++||||| ++||+.++.
T Consensus       102 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~  181 (247)
T TIGR00972       102 IAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG  181 (247)
T ss_pred             HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            433211100001111112233455555553    1        11            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+++.+..+||++
T Consensus       182 ~l~~~l~~~~~~~tiiiv------sH~~~~~~~~~d~i  213 (247)
T TIGR00972       182 KIEELIQELKKKYTIVIV------THNMQQAARISDRT  213 (247)
T ss_pred             HHHHHHHHHHhcCeEEEE------ecCHHHHHHhCCEE
Confidence            999999988667899999      99999999999984

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.97  E-value=1.5e-30  Score=206.27  Aligned_cols=155  Identities=16%  Similarity=0.150  Sum_probs=114.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-cCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-QGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+.++|++|++.  ...+..+++.+....
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~  101 (236)
T TIGR03864        22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAAL  101 (236)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHh
Confidence            578999999999999999999999999999999999999998764221 22347999999762  334555554332110


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-  135 (193)
                       .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+. 
T Consensus       102 -~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~  180 (236)
T TIGR03864       102 -HGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCR  180 (236)
T ss_pred             -cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH
Confidence             011111111223455666665432        1            8899999999999 6999999999999998875 


Q ss_pred             C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      + |.|+|++      ||+.+.+.. ||++
T Consensus       181 ~~~~tiii~------sH~~~~~~~-~d~i  202 (236)
T TIGR03864       181 DQGLSVLWA------THLVDEIEA-DDRL  202 (236)
T ss_pred             hCCCEEEEE------ecChhhHhh-CCEE
Confidence            3 8999999      999998864 8883

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.97  E-value=5e-31  Score=208.35  Aligned_cols=154  Identities=14%  Similarity=0.156  Sum_probs=114.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....   ...+|++|++  .+..++.+++.+.....
T Consensus         6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~~~v~q~~~l~~~~tv~e~l~~~~~~~   82 (230)
T TIGR01184         6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG---PDRMVVFQNYSLLPWLTVRENIALAVDRV   82 (230)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---hhheEEecCcccCCCCCHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999999998864321   1248999976  23345566544321100


Q ss_pred             -CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-
Q 029421           79 -YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-  135 (193)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-  135 (193)
                       .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+. 
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~  162 (230)
T TIGR01184        83 LPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWE  162 (230)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence             011111111223455666665432        1            7899999999999 6999999999999998874 


Q ss_pred             C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      + |.|||++      |||++++.++||++
T Consensus       163 ~~~~tii~~------sH~~~~~~~~~d~v  185 (230)
T TIGR01184       163 EHRVTVLMV------THDVDEALLLSDRV  185 (230)
T ss_pred             hcCCEEEEE------eCCHHHHHHhcCEE
Confidence            4 8999999      99999999999983

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.97  E-value=6.8e-31  Score=219.54  Aligned_cols=154  Identities=16%  Similarity=0.155  Sum_probs=119.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...      ...++.++|+||++  ++..++.+++.
T Consensus        18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~   97 (354)
T TIGR02142        18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLR   97 (354)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHH
Confidence            57899999999999999999999999999999999999999886321      12356799999986  33456666654


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +....   ...........++++.+++..+.                    ++.+|+++||||| ++||+.++..+.+++
T Consensus        98 ~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L  174 (354)
T TIGR02142        98 YGMKR---ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL  174 (354)
T ss_pred             HHhhc---cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence            43211   01111112244566666665321                    8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+. + |.|||++      |||++++..+||++
T Consensus       175 ~~l~~~~g~tiiiv------tH~~~~~~~~~d~i  202 (354)
T TIGR02142       175 ERLHAEFGIPILYV------SHSLQEVLRLADRV  202 (354)
T ss_pred             HHHHHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence            8875 4 8999999      99999999999984

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.97  E-value=2.7e-31  Score=207.11  Aligned_cols=155  Identities=18%  Similarity=0.205  Sum_probs=114.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      |++++| +++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.  ...++.+++.+....
T Consensus        21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~   99 (211)
T cd03264          21 LTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL   99 (211)
T ss_pred             EEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHH
Confidence            578899 9999999999999999999999999999999999876322 223567999999863  233555554321100


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                       .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus       100 -~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  178 (211)
T cd03264         100 -KGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE  178 (211)
T ss_pred             -hCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC
Confidence             000111111223345555555422        1            8899999999999 69999999999999998876


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.|||++      |||.+++.++||++
T Consensus       179 ~~tii~v------sH~~~~~~~~~d~i  199 (211)
T cd03264         179 DRIVILS------THIVEDVESLCNQV  199 (211)
T ss_pred             CCEEEEE------cCCHHHHHHhCCEE
Confidence            7899999      99999999999983

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.97  E-value=6e-31  Score=209.27  Aligned_cols=156  Identities=17%  Similarity=0.293  Sum_probs=117.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..  ....+..++|+||++  .+..++.+++.+...
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~  101 (242)
T cd03295          22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPK  101 (242)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999987632  122345799999986  223455565433211


Q ss_pred             CCCCCCcccceeeehhhhhhhcccc--cc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPE--LQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~--~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                       ..............++++.+++..  +.                    ++.+|+++||||| ++||+.++..+.++++.
T Consensus       102 -~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~  180 (242)
T cd03295         102 -LLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR  180 (242)
T ss_pred             -HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence             001111111122345566666653  21                    8899999999999 69999999999999988


Q ss_pred             Hh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++ + |.|||++      ||+.+++..+||++
T Consensus       181 ~~~~~g~tvii~------sH~~~~~~~~~d~i  206 (242)
T cd03295         181 LQQELGKTIVFV------THDIDEAFRLADRI  206 (242)
T ss_pred             HHHHcCCEEEEE------ecCHHHHHHhCCEE
Confidence            75 4 8999999      99999999999984

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.4e-31  Score=214.60  Aligned_cols=156  Identities=16%  Similarity=0.203  Sum_probs=117.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC---CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD---DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~---~~~~~~~~~~~   73 (193)
                      |+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..    ....+..+||+||++.   ...++.+++.+
T Consensus        27 ~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~  106 (283)
T PRK13636         27 INIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSF  106 (283)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHh
Confidence            5789999999999999999999999999999999999999988631    1233567999999862   12355555433


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............++++.+++....                    ++.+|+++||||| ++||+.++..+.++++
T Consensus       107 ~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~  185 (283)
T PRK13636        107 GAVN-LKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV  185 (283)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            2110 0111111112344566666665321                    8899999999999 6999999999999998


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |.|||++      |||++++..+||++
T Consensus       186 ~l~~~~g~tillv------sH~~~~~~~~~dri  212 (283)
T PRK13636        186 EMQKELGLTIIIA------THDIDIVPLYCDNV  212 (283)
T ss_pred             HHHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence            875 4 8999999      99999999999984

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.97  E-value=5.4e-31  Score=210.67  Aligned_cols=157  Identities=15%  Similarity=0.255  Sum_probs=115.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---------------ccCCceeeEEEeecC--C
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---------------RQGGQRVGFEVVTLD--D   63 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---------------~~~~~~ig~~~q~~~--~   63 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...               ...++.++|++|++.  +
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~  100 (252)
T TIGR03005        21 FSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFP  100 (252)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCC
Confidence            67899999999999999999999999999999999999999876321               123467999999762  2


Q ss_pred             cccccccccCCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCcccc
Q 029421           64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELF  122 (193)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~  122 (193)
                      ..+..+++.+..................+.++.+++...        +            ++.+|+++||||| ++||+.
T Consensus       101 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~  180 (252)
T TIGR03005       101 HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE  180 (252)
T ss_pred             CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence            345555543311000000111111223455666665432        1            8899999999999 699999


Q ss_pred             ccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          123 SSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       123 ~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++..+.++++.+. + |.|+|++      ||+++.+..+||++
T Consensus       181 ~~~~l~~~l~~~~~~~~~tiiiv------sH~~~~~~~~~d~i  217 (252)
T TIGR03005       181 LVGEVLNVIRRLASEHDLTMLLV------THEMGFAREFADRV  217 (252)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEE------eCCHHHHHHhcCEE
Confidence            9999999998875 4 8999999      99999999999984

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.97  E-value=6.7e-31  Score=207.16  Aligned_cols=154  Identities=16%  Similarity=0.196  Sum_probs=112.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeecC--Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTLD--DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~~--~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....      ..++.++|++|++.  +..+..+++.
T Consensus        31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~  110 (228)
T PRK10584         31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVE  110 (228)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHH
Confidence            578999999999999999999999999999999999999998764221      11357999999862  2345555543


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +... ..............+.++.+++.+.        +            ++.+|+++||||| ++||+.++..+.+++
T Consensus       111 ~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  189 (228)
T PRK10584        111 LPAL-LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL  189 (228)
T ss_pred             HHHH-hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            3210 0001111111223445555555422        1            8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.++ + |.|||++      |||.+.+. .||+
T Consensus       190 ~~~~~~~~~tii~~------sH~~~~~~-~~d~  215 (228)
T PRK10584        190 FSLNREHGTTLILV------THDLQLAA-RCDR  215 (228)
T ss_pred             HHHHHhcCCEEEEE------ecCHHHHH-hCCE
Confidence            8874 4 8999999      99998875 4887

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.6e-31  Score=218.28  Aligned_cols=157  Identities=16%  Similarity=0.156  Sum_probs=116.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC----Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD----DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~----~~~~~~~~~   71 (193)
                      |+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++...     ...+++++|+||++.    +..+..+++
T Consensus        36 l~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l  115 (327)
T PRK11308         36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQIL  115 (327)
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHH
Confidence            67899999999999999999999999999999999999999986322     233567999999862    222222222


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      ....................++++.+++.. .        +            ++.+|++||+||| ++||+.++..+.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~  195 (327)
T PRK11308        116 EEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN  195 (327)
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH
Confidence            111000001111112233456677777642 1        1            8899999999999 6999999999999


Q ss_pred             HHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+++  |.|+|++      |||+..+.++||++
T Consensus       196 lL~~l~~~~g~til~i------THdl~~~~~~adrv  225 (327)
T PRK11308        196 LMMDLQQELGLSYVFI------SHDLSVVEHIADEV  225 (327)
T ss_pred             HHHHHHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            9988754  9999999      99999999999995

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5e-31  Score=213.52  Aligned_cols=156  Identities=17%  Similarity=0.229  Sum_probs=117.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC---CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD---DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~---~~~~~~~~~~~   73 (193)
                      |+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..    ....++.++|++|++.   ...++.+++.+
T Consensus        23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~  102 (275)
T PRK13639         23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAF  102 (275)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence            5789999999999999999999999999999999999999988631    1123467999999852   22345555432


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............+.++.+++..+.                    ++.+|+++||||| ++||+.++..+.++++
T Consensus       103 ~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~  181 (275)
T PRK13639        103 GPLN-LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY  181 (275)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence            2110 0111111112334566666664321                    8899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+ |.|||++      |||++.+.++||++
T Consensus       182 ~l~~~~~til~v------tH~~~~~~~~~d~i  207 (275)
T PRK13639        182 DLNKEGITIIIS------THDVDLVPVYADKV  207 (275)
T ss_pred             HHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence            8865 9999999      99999999999984

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.97  E-value=1.7e-30  Score=204.25  Aligned_cols=150  Identities=14%  Similarity=0.220  Sum_probs=114.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.+....  ..+.++|+||++.  +..+..+++.+... .
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~--~~~~~~~~~q~~~~~~~~t~~~~~~~~~~-~   97 (223)
T TIGR03740        21 LTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK--DLHKIGSLIESPPLYENLTARENLKVHTT-L   97 (223)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc--ccccEEEEcCCCCccccCCHHHHHHHHHH-H
Confidence            57899999999999999999999999999999999999999876422  1247899999762  22355555432110 0


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                      ...    ......++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++ 
T Consensus        98 ~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~  173 (223)
T TIGR03740        98 LGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ  173 (223)
T ss_pred             cCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence            000    11223455566665432        1            7899999999999 69999999999999998865 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |.|||++      |||.+++..+||++
T Consensus       174 ~~tiii~------sH~~~~~~~~~d~i  194 (223)
T TIGR03740       174 GITVILS------SHILSEVQQLADHI  194 (223)
T ss_pred             CCEEEEE------cCCHHHHHHhcCEE
Confidence            8999999      99999999999984

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.97  E-value=1.8e-30  Score=204.24  Aligned_cols=154  Identities=18%  Similarity=0.339  Sum_probs=115.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC----cccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD----RRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~----~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..   .++.++|++|++..    ..+..+++.+...
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~   77 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT   77 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH---hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence            6899999999999999999999999999999999999999987532   24579999997621    1233444322211


Q ss_pred             CC---CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 ES---YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~~---~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ..   .............+.++.+++....                    ++.+|+++|+||| ++||+.++..+.++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~  157 (223)
T TIGR03771        78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI  157 (223)
T ss_pred             cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            00   0001111112234556666664321                    8899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      |||++++.++||++
T Consensus       158 ~~~~~~~tvii~------sH~~~~~~~~~d~i  183 (223)
T TIGR03771       158 ELAGAGTAILMT------THDLAQAMATCDRV  183 (223)
T ss_pred             HHHHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            8875 9999999      99999999999984

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=6.1e-31  Score=212.89  Aligned_cols=155  Identities=15%  Similarity=0.204  Sum_probs=115.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecC---CcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLD---DRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~---~~~~~~~~~~~~   74 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...   ...++.+||++|++.   ...+..+++.+.
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~  102 (274)
T PRK13644         23 LVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG  102 (274)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhh
Confidence            67899999999999999999999999999999999999999886422   223467999999862   223555554332


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      .... ............+.++.+++....                    ++.+|+++||||| ++||+.++..+.++++.
T Consensus       103 ~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  181 (274)
T PRK13644        103 PENL-CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK  181 (274)
T ss_pred             HHHc-CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1110 011111112234455666654321                    8899999999999 69999999999999998


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++ |.|||++      |||++.+. .||++
T Consensus       182 l~~~g~til~~------tH~~~~~~-~~d~v  205 (274)
T PRK13644        182 LHEKGKTIVYI------THNLEELH-DADRI  205 (274)
T ss_pred             HHhCCCEEEEE------ecCHHHHh-hCCEE
Confidence            876 9999999      99999884 69984

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=6.5e-31  Score=213.23  Aligned_cols=155  Identities=13%  Similarity=0.183  Sum_probs=116.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec---CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL---DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..  ....++++||+||++   ....++.+++.+..
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~  107 (279)
T PRK13650         28 FHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL  107 (279)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhH
Confidence            5789999999999999999999999999999999999999998742  122346799999976   22345566654322


Q ss_pred             CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .. .............++++.+++....                    ++.+|++|||||| ++||+.++..+.++++.+
T Consensus       108 ~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l  186 (279)
T PRK13650        108 EN-KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGI  186 (279)
T ss_pred             Hh-CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            11 1111111112344566666665321                    8899999999999 699999999999999887


Q ss_pred             h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      + + |.|||++      |||++.+ ..||++
T Consensus       187 ~~~~g~tiliv------tH~~~~~-~~~dri  210 (279)
T PRK13650        187 RDDYQMTVISI------THDLDEV-ALSDRV  210 (279)
T ss_pred             HHhcCCEEEEE------ecCHHHH-HhCCEE
Confidence            5 4 8999999      9999988 479983

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.97  E-value=9.2e-31  Score=206.61  Aligned_cols=153  Identities=17%  Similarity=0.216  Sum_probs=112.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecC--CcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD--DRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~--~~~~~~~~~~~~~   75 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....   ..++.++|+||++.  +..+..+++.+..
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  100 (230)
T TIGR03410        21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGL  100 (230)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHH
Confidence            678999999999999999999999999999999999999998864221   12457999999862  2335555543221


Q ss_pred             CCCCCCCcccceeeehhhhhhhc-cc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIA-LP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~-l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      ... ...   ......+.++.++ +.        .++            ++.+|+++||||| ++||+.++..+.+++..
T Consensus       101 ~~~-~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~  176 (230)
T TIGR03410       101 AAL-PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR  176 (230)
T ss_pred             Hhc-Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            110 000   0111122233332 11        111            7899999999999 69999999999999988


Q ss_pred             HhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++  |.|||++      ||+++++..+||++
T Consensus       177 ~~~~~~~tii~~------sH~~~~~~~~~d~v  202 (230)
T TIGR03410       177 LRAEGGMAILLV------EQYLDFARELADRY  202 (230)
T ss_pred             HHHcCCcEEEEE------eCCHHHHHHhCCEE
Confidence            754  8999999      99999999999984

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=1.2e-30  Score=204.10  Aligned_cols=152  Identities=14%  Similarity=0.167  Sum_probs=113.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.++|++|++.  +..+..+++.+... .
T Consensus        32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~-~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~-~  109 (214)
T PRK13543         32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG-DRSRFMAYLGHLPGLKADLSTLENLHFLCG-L  109 (214)
T ss_pred             EEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch-hhhhceEEeecCcccccCCcHHHHHHHHHH-h
Confidence            57899999999999999999999999999999999999999887432 22456899998752  22344554332110 0


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                      ..   ........+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++ 
T Consensus       110 ~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  186 (214)
T PRK13543        110 HG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG  186 (214)
T ss_pred             cC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence            00   0011122344555554322        1            7899999999999 69999999999999988765 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |.|+|++      |||..++.++|+++
T Consensus       187 ~~tiii~------sH~~~~~~~~~~~i  207 (214)
T PRK13543        187 GGAALVT------THGAYAAPPVRTRM  207 (214)
T ss_pred             CCEEEEE------ecChhhhhhhcceE
Confidence            8999999      99999999999883

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=8.9e-31  Score=212.42  Aligned_cols=155  Identities=15%  Similarity=0.179  Sum_probs=116.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec---CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL---DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~---~~~~~~~~~~~~~~   75 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++...  ...++.+||+||++   ....++.+++.+..
T Consensus        28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~  107 (279)
T PRK13635         28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL  107 (279)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhH
Confidence            57899999999999999999999999999999999999999987432  22346799999976   22345666654322


Q ss_pred             CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      ... ............++++.+++....                    ++.+|+++||||| +|||+.++..+.++++.+
T Consensus       108 ~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l  186 (279)
T PRK13635        108 ENI-GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQL  186 (279)
T ss_pred             hhC-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            111 111111112234555666654321                    8899999999999 699999999999999887


Q ss_pred             hC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+  |.|||++      |||++.+. .||++
T Consensus       187 ~~~~~~tiliv------sH~~~~~~-~~d~i  210 (279)
T PRK13635        187 KEQKGITVLSI------THDLDEAA-QADRV  210 (279)
T ss_pred             HHcCCCEEEEE------ecCHHHHH-cCCEE
Confidence            64  8999999      99999886 49883

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.9e-31  Score=212.63  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=113.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----hccCCceeeEEEeecC---CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD---DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~---~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++..    ....++.++|++|++.   ...+..+++.+
T Consensus        22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~  101 (271)
T PRK13638         22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAF  101 (271)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHH
Confidence            5789999999999999999999999999999999999999988631    1123457999999752   11122333322


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............+.++.+++..+        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       102 ~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~  180 (271)
T PRK13638        102 SLRN-LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR  180 (271)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            1100 001111111123345555555322        1            8899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      |||++.+..+||++
T Consensus       181 ~~~~~g~tii~v------tH~~~~~~~~~d~i  206 (271)
T PRK13638        181 RIVAQGNHVIIS------SHDIDLIYEISDAV  206 (271)
T ss_pred             HHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence            8865 8999999      99999999999984

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.2e-30  Score=209.03  Aligned_cols=157  Identities=16%  Similarity=0.177  Sum_probs=116.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|+||++.  ...+..+++.+...
T Consensus        23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~  102 (255)
T PRK11231         23 LSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRS  102 (255)
T ss_pred             eEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccc
Confidence            57899999999999999999999999999999999999999876432  223456999999862  22345555433211


Q ss_pred             CC---CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 ES---YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~~---~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ..   .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~  182 (255)
T PRK11231        103 PWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR  182 (255)
T ss_pred             hhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            00   000011111223345555555422        1            8899999999999 6999999999999998


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+ |.|||++      ||+++++.++||++
T Consensus       183 ~l~~~~~tiii~------tH~~~~~~~~~d~i  208 (255)
T PRK11231        183 ELNTQGKTVVTV------LHDLNQASRYCDHL  208 (255)
T ss_pred             HHHHCCCEEEEE------ECCHHHHHHhcCEE
Confidence            8865 8999999      99999999999984

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.6e-30  Score=214.54  Aligned_cols=156  Identities=13%  Similarity=0.193  Sum_probs=117.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------------------hccCCceeeEEEeecC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------------------IRQGGQRVGFEVVTLD   62 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------------------~~~~~~~ig~~~q~~~   62 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..                  ....++++||++|++.
T Consensus        47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~  126 (320)
T PRK13631         47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE  126 (320)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECch
Confidence            5789999999999999999999999999999999999999987532                  1233567999999762


Q ss_pred             ---CcccccccccCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-C
Q 029421           63 ---DRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-G  117 (193)
Q Consensus        63 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~  117 (193)
                         ...+..+++.+.... .............+.++.+++. .+        +            ++.+|+++||||| +
T Consensus       127 ~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPts  205 (320)
T PRK13631        127 YQLFKDTIEKDIMFGPVA-LGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA  205 (320)
T ss_pred             hccccchHHHHHHhhHHh-cCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence               112445554332110 0111111112334566666664 22        1            8899999999999 6


Q ss_pred             CccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          118 KMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       118 ~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +||+.++..+.++++.+.+ |.|||++      |||++++.++||++
T Consensus       206 gLD~~~~~~l~~~L~~l~~~g~Tiiiv------tHd~~~~~~~adri  246 (320)
T PRK13631        206 GLDPKGEHEMMQLILDAKANNKTVFVI------THTMEHVLEVADEV  246 (320)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence            9999999999999988765 9999999      99999999999984

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.97  E-value=6.9e-31  Score=211.84  Aligned_cols=157  Identities=13%  Similarity=0.162  Sum_probs=113.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC----CcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD----DRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~----~~~~~~~~~~~~   74 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..  ....++.++|+||++.    +..++.+++.+.
T Consensus        34 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~  113 (267)
T PRK15112         34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFP  113 (267)
T ss_pred             EEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHH
Confidence            5789999999999999999999999999999999999999988642  1122356999999752    112222232211


Q ss_pred             CCCCCCCCcccceeeehhhhhhhccc-c--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALP-E--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .................+.++.+++. .        ++            ++.+|+++||||| ++||+.++..+.+++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  193 (267)
T PRK15112        114 LRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLML  193 (267)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            10000011111112234556666662 2        11            7899999999999 6999999999999998


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |.|||++      ||+++.+..+||++
T Consensus       194 ~~~~~~g~tviiv------sH~~~~~~~~~d~i  220 (267)
T PRK15112        194 ELQEKQGISYIYV------TQHLGMMKHISDQV  220 (267)
T ss_pred             HHHHHcCcEEEEE------eCCHHHHHHhcCEE
Confidence            875 4 8999999      99999999999984

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.96  E-value=1.9e-30  Score=208.08  Aligned_cols=147  Identities=15%  Similarity=0.212  Sum_probs=114.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.+...   .++.++|++|++.  +..++.+++.+.... 
T Consensus        33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-  108 (257)
T PRK11247         33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE---AREDTRLMFQDARLLPWKKVIDNVGLGLKG-  108 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH---hhCceEEEecCccCCCCCcHHHHHHhcccc-
Confidence            5789999999999999999999999999999999999998876532   2457999999862  234556654432110 


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH-hC
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL-ES  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l-~~  136 (193)
                            .......+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+ ++
T Consensus       109 ------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~  182 (257)
T PRK11247        109 ------QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ  182 (257)
T ss_pred             ------hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence                  001223445566665432        1            8899999999999 699999999999999887 44


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      |||.+++..+||++
T Consensus       183 ~~~tviiv------sHd~~~~~~~~d~i  204 (257)
T PRK11247        183 HGFTVLLV------THDVSEAVAMADRV  204 (257)
T ss_pred             cCCEEEEE------eCCHHHHHHhCCEE
Confidence             8999999      99999999999984

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7.9e-31  Score=216.83  Aligned_cols=157  Identities=15%  Similarity=0.194  Sum_probs=114.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc----cCCCCeEEeceEchhh-----cc-CCceeeEEEeecC----Cccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK----ASNPSLKVQGFYTGEI-----RQ-GGQRVGFEVVTLD----DRRA   66 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~----~~~G~i~~~g~~~~~~-----~~-~~~~ig~~~q~~~----~~~~   66 (193)
                      |+|++||+++|+|+||||||||+++|+|+++    |++|+|.++|+++...     .. .++.++|+||++.    +.++
T Consensus        28 l~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~  107 (326)
T PRK11022         28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT  107 (326)
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence            6899999999999999999999999999997    4899999999986322     11 2357999999863    1122


Q ss_pred             ccccccCCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCcccc
Q 029421           67 PLASINASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMELF  122 (193)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~~  122 (193)
                      ..+++....................+.++.+++.+           ++            ++.+|++||+||| ++||+.
T Consensus       108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~  187 (326)
T PRK11022        108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT  187 (326)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence            22211110000001111112233456777777742           11            8899999999999 699999


Q ss_pred             ccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          123 SSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       123 ~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++..+.++++.+++  |.|+|++      |||+..+.++||++
T Consensus       188 ~~~~il~lL~~l~~~~g~til~i------THdl~~~~~~adri  224 (326)
T PRK11022        188 IQAQIIELLLELQQKENMALVLI------THDLALVAEAAHKI  224 (326)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            99999999998854  8999999      99999999999995

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.96  E-value=3.8e-30  Score=195.00  Aligned_cols=140  Identities=24%  Similarity=0.302  Sum_probs=107.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.+.... ...++.++|++|++.  +..+..+++.+    
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~L----   96 (173)
T cd03230          21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL----   96 (173)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhc----
Confidence            57899999999999999999999999999999999999999876322 233467999999752  22233333210    


Q ss_pred             CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~  155 (193)
                          .        .-..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+.+ |.|+|++      |||.++
T Consensus        97 ----S--------~G~~qrv~la-ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~------th~~~~  157 (173)
T cd03230          97 ----S--------GGMKQRLALA-QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLS------SHILEE  157 (173)
T ss_pred             ----C--------HHHHHHHHHH-HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE------CCCHHH
Confidence                0        0011122211 236889999999999 69999999999999998865 8999999      999999


Q ss_pred             HHHHhcCC
Q 029421          156 VARLRNHP  163 (193)
Q Consensus       156 ~~~~~d~~  163 (193)
                      +..+||++
T Consensus       158 ~~~~~d~i  165 (173)
T cd03230         158 AERLCDRV  165 (173)
T ss_pred             HHHhCCEE
Confidence            98899873

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.5e-31  Score=212.36  Aligned_cols=156  Identities=19%  Similarity=0.207  Sum_probs=115.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC---CcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD---DRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~---~~~~~~~~~~~~~   75 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++..  ....+..++|++|++.   ...++.+++.+..
T Consensus        25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~  104 (277)
T PRK13652         25 FIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGP  104 (277)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHH
Confidence            5789999999999999999999999999999999999999987642  2233467899999852   1234455543211


Q ss_pred             CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .. .............++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       105 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l  183 (277)
T PRK13652        105 IN-LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDL  183 (277)
T ss_pred             HH-cCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            10 011111111223455566565422        1            8899999999999 699999999999999887


Q ss_pred             h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      . + |.|||++      ||+++++.++||++
T Consensus       184 ~~~~g~tvli~------tH~~~~~~~~~drv  208 (277)
T PRK13652        184 PETYGMTVIFS------THQLDLVPEMADYI  208 (277)
T ss_pred             HHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence            5 4 8999999      99999999999994

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.96  E-value=1.1e-30  Score=204.18  Aligned_cols=153  Identities=14%  Similarity=0.194  Sum_probs=114.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeecC--Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTLD--DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~--~~~~~~~~~~   72 (193)
                      |+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++..      ....++.++|++|++.  +..+..+++.
T Consensus        19 l~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~   97 (214)
T cd03297          19 FDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLA   97 (214)
T ss_pred             EEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHH
Confidence            57899 9999999999999999999999999999999999987531      1123467999999862  2345555543


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +.....   ..........+.++.+++...        +            ++.+|+++||||| ++||+.++..+.+++
T Consensus        98 ~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (214)
T cd03297          98 FGLKRK---RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL  174 (214)
T ss_pred             HHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            321110   000111223455666665431        1            8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+. + |.|||++      |||.+++..+||++
T Consensus       175 ~~~~~~~~~tiii~------sH~~~~~~~~~d~i  202 (214)
T cd03297         175 KQIKKNLNIPVIFV------THDLSEAEYLADRI  202 (214)
T ss_pred             HHHHHHcCcEEEEE------ecCHHHHHHhcCEE
Confidence            8875 4 8999999      99999999999984

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.96  E-value=9.8e-31  Score=206.59  Aligned_cols=156  Identities=15%  Similarity=0.201  Sum_probs=113.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc----CCCCeEEeceEchhhccCCceeeEEEeecC----Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA----SNPSLKVQGFYTGEIRQGGQRVGFEVVTLD----DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~----~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~----~~~~~~~~~~   72 (193)
                      |++++|++++|+||||||||||+++|+|+++|    ++|+|.++|+++......++.++|++|++.    +..+..++..
T Consensus         7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~   86 (230)
T TIGR02770         7 LSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAI   86 (230)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHH
Confidence            57899999999999999999999999999999    899999999887433222357999999862    1123333221


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ..... .............+.++.+++.+           ++            ++.+|+++||||| ++||+.++..+.
T Consensus        87 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~  165 (230)
T TIGR02770        87 ETLRS-LGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL  165 (230)
T ss_pred             HHHHH-cCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence            11100 00011111122344555555541           11            7899999999999 699999999999


Q ss_pred             HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.++ + |.|||++      ||+++++..+||++
T Consensus       166 ~~l~~~~~~~~~tiii~------sH~~~~~~~~~d~i  196 (230)
T TIGR02770       166 KLLRELRQLFGTGILLI------THDLGVVARIADEV  196 (230)
T ss_pred             HHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            9998875 3 8999999      99999999999984

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.8e-31  Score=212.52  Aligned_cols=156  Identities=13%  Similarity=0.193  Sum_probs=114.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeecC---Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTLD---DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~---~~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...      ...++.++|++|++.   ...++.+++
T Consensus        28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l  107 (280)
T PRK13649         28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDV  107 (280)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHH
Confidence            57899999999999999999999999999999999999999876321      223467999999751   123455554


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      .+.... .............++++.+++..         ++            ++.+|+++||||| ++||+.++..+.+
T Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~  186 (280)
T PRK13649        108 AFGPQN-FGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT  186 (280)
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            321110 00111011112234455555531         11            8899999999999 6999999999999


Q ss_pred             HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+++ |.|||++      ||+.+++..+||++
T Consensus       187 ~l~~~~~~~~tiiiv------sH~~~~~~~~~d~i  215 (280)
T PRK13649        187 LFKKLHQSGMTIVLV------THLMDDVANYADFV  215 (280)
T ss_pred             HHHHHHHCCCEEEEE------eccHHHHHHhCCEE
Confidence            9998865 8999999      99999999999983

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=2.4e-30  Score=197.58  Aligned_cols=144  Identities=14%  Similarity=0.140  Sum_probs=108.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecC-----Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLD-----DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~-----~~~~~~~~~~   72 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...   ...++.++|++|++.     +..+..+++.
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~  100 (182)
T cd03215          21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA  100 (182)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence            57899999999999999999999999999999999999999886432   123467999998731     1223333322


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCC
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSG  150 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~t  150 (193)
                      +...            .-.-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+.+ |.|+|++      |
T Consensus       101 ~~~~------------LS~G~~qrl~la-~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~------s  161 (182)
T cd03215         101 LSSL------------LSGGNQQKVVLA-RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI------S  161 (182)
T ss_pred             HHhh------------cCHHHHHHHHHH-HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE------e
Confidence            2100            000011122221 236889999999999 69999999999999998865 8999999      9


Q ss_pred             CChhHHHHHhcCC
Q 029421          151 RDIPAVARLRNHP  163 (193)
Q Consensus       151 Hd~~~~~~~~d~~  163 (193)
                      |+.+++.++||++
T Consensus       162 h~~~~~~~~~d~v  174 (182)
T cd03215         162 SELDELLGLCDRI  174 (182)
T ss_pred             CCHHHHHHhCCEE
Confidence            9999999999983

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.96  E-value=2.4e-30  Score=200.53  Aligned_cols=150  Identities=13%  Similarity=0.097  Sum_probs=113.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+.... ...++.++|++|++.  +..+..+++.+....
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  100 (201)
T cd03231          21 FTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD  100 (201)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc
Confidence            57899999999999999999999999999999999999999876322 233567999998752  234555554332110


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                          .   ......+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus       101 ----~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  173 (201)
T cd03231         101 ----H---SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA  173 (201)
T ss_pred             ----c---cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence                0   11223344555555422        1            8899999999999 69999999999999988765


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      ||+......+|++.
T Consensus       174 ~g~tiii~------sH~~~~~~~~~~~~  195 (201)
T cd03231         174 RGGMVVLT------THQDLGLSEAGARE  195 (201)
T ss_pred             CCCEEEEE------ecCchhhhhcccee
Confidence             8999999      99988888888873

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.96  E-value=1.4e-30  Score=206.04  Aligned_cols=156  Identities=15%  Similarity=0.199  Sum_probs=116.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++.  ...+..+++.+.... 
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~-   99 (232)
T cd03300          21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL-   99 (232)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHh-
Confidence            57899999999999999999999999999999999999999887543333567999999863  223455554321110 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                      .............++++.+++.+..                    ++.+|+++||||| +|||+.++..+.++++.+++ 
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~  179 (232)
T cd03300         100 KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE  179 (232)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence            0000001111233455555554321                    8899999999999 69999999999999988753 


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      ||+.+++.++||++
T Consensus       180 ~~~tiii~------sh~~~~~~~~~d~i  201 (232)
T cd03300         180 LGITFVFV------THDQEEALTMSDRI  201 (232)
T ss_pred             cCCEEEEE------eCCHHHHHHhcCEE
Confidence             8999999      99999999999984

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.9e-30  Score=209.08  Aligned_cols=157  Identities=17%  Similarity=0.139  Sum_probs=116.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec--CCcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL--DDRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~   76 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++  ....+..+++.+...
T Consensus        32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  111 (265)
T PRK10575         32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRY  111 (265)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcc
Confidence            67899999999999999999999999999999999999999876321  22345799999975  233455555443211


Q ss_pred             CCCC---CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 ESYR---WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~~~~---~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ....   ...........+.++.+++...        +            ++.+|+++||||| ++||+.++..+.+++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~  191 (265)
T PRK10575        112 PWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH  191 (265)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            1000   0000111223455566665432        1            8899999999999 6999999999999998


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |.|||++      ||+++++.++||++
T Consensus       192 ~l~~~~~~tiii~------sH~~~~i~~~~d~i  218 (265)
T PRK10575        192 RLSQERGLTVIAV------LHDINMAARYCDYL  218 (265)
T ss_pred             HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            875 4 8999999      99999999999984

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.7e-30  Score=208.23  Aligned_cols=157  Identities=18%  Similarity=0.232  Sum_probs=117.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.  ...+..+++.+...
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~  101 (256)
T TIGR03873        22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRI  101 (256)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcch
Confidence            57899999999999999999999999999999999999999876432  122456899999862  23455666543211


Q ss_pred             CC---CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 ES---YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~~---~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ..   .............+.++.+++.+.        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  181 (256)
T TIGR03873       102 PHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR  181 (256)
T ss_pred             hhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence            00   000111111223455566655432        1            7889999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      ||+++.+.++||++
T Consensus       182 ~~~~~~~tiii~------sH~~~~~~~~~d~i  207 (256)
T TIGR03873       182 ELAATGVTVVAA------LHDLNLAASYCDHV  207 (256)
T ss_pred             HHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            8876 8999999      99999999999984

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.5e-30  Score=196.13  Aligned_cols=180  Identities=18%  Similarity=0.266  Sum_probs=128.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccccCCC-
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASINASS-   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~-   75 (193)
                      ++|++|.+++++||||||||||+.+++.++++++|+|+++|.++..  .....++++..-|..  ....++.+-..+.. 
T Consensus        22 l~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf  101 (252)
T COG4604          22 LDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF  101 (252)
T ss_pred             eeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC
Confidence            4689999999999999999999999999999999999999998732  223334455544433  22333333333322 


Q ss_pred             CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      ++...+...++.....++++.+.+.+++                    ++++++.++|||| ++||......++++++.+
T Consensus       102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl  181 (252)
T COG4604         102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL  181 (252)
T ss_pred             cccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence            2233334444445556666666665543                    8899999999999 899999999999999988


Q ss_pred             hC--CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCCh-hHHHHHHHHHHHH
Q 029421          135 ES--NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNR-DSLKDNIYYQLTD  188 (193)
Q Consensus       135 ~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~-~~l~~~~~~~~~~  188 (193)
                      .+  |+||++|      -||++++..|+|++    +|+++  ..+++ +.+...+.+.+.+
T Consensus       182 a~el~KtiviV------lHDINfAS~YsD~IVAlK~G~vv--~~G~~~eii~~~~L~eiyd  234 (252)
T COG4604         182 ADELGKTIVVV------LHDINFASCYSDHIVALKNGKVV--KQGSPDEIIQPEILSEIYD  234 (252)
T ss_pred             HHHhCCeEEEE------EecccHHHhhhhheeeecCCEEE--ecCCHHHhcCHHHHHHHhc
Confidence            64  9999999      89999999999993    45543  33343 3455666555443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.96  E-value=4.5e-30  Score=195.45  Aligned_cols=142  Identities=21%  Similarity=0.332  Sum_probs=107.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----ccCCceeeEEEeecC--CcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLD--DRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~--~~~~~~~~~~~~   74 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...    ...++.++|++|++.  ...+..++..+.
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~  100 (178)
T cd03229          21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG  100 (178)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence            57899999999999999999999999999999999999999876432    234567999998752  112333332211


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCC
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGR  151 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tH  151 (193)
                                    .-.-..+++.+. ..++.+|++++|||| ++||+.++..+.++++.+++  |.|+|++      ||
T Consensus       101 --------------lS~G~~qr~~la-~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~------sH  159 (178)
T cd03229         101 --------------LSGGQQQRVALA-RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLV------TH  159 (178)
T ss_pred             --------------CCHHHHHHHHHH-HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE------eC
Confidence                          000011122211 236789999999999 69999999999999988764  7999999      99


Q ss_pred             ChhHHHHHhcCC
Q 029421          152 DIPAVARLRNHP  163 (193)
Q Consensus       152 d~~~~~~~~d~~  163 (193)
                      |.+++..+||++
T Consensus       160 ~~~~~~~~~d~i  171 (178)
T cd03229         160 DLDEAARLADRV  171 (178)
T ss_pred             CHHHHHHhcCEE
Confidence            999998899883

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.96  E-value=2.4e-30  Score=207.72  Aligned_cols=156  Identities=15%  Similarity=0.205  Sum_probs=115.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.  ...++.+++.+...
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~  102 (258)
T PRK13548         23 LTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRA  102 (258)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhc
Confidence            57899999999999999999999999999999999999999876322  123457999999862  33455555443211


Q ss_pred             CCCCCCcccceeeehhhhhhhccccc--------c------------cC------CCCCEEEEecC-CCccccccchHHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VG------ADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~------~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      .. ............+.++.+++...        +            ++      .+|+++||||| ++||+.++..+.+
T Consensus       103 ~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~  181 (258)
T PRK13548        103 PH-GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR  181 (258)
T ss_pred             cc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH
Confidence            11 00001111223445566665432        1            55      49999999999 6999999999999


Q ss_pred             HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+. + |.|||++      |||++++..+||++
T Consensus       182 ~l~~~~~~~~~tiii~------sH~~~~~~~~~d~i  211 (258)
T PRK13548        182 LARQLAHERGLAVIVV------LHDLNLAARYADRI  211 (258)
T ss_pred             HHHHHHHhcCCEEEEE------ECCHHHHHHhcCEE
Confidence            999876 5 8999999      99999999999984

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.96  E-value=5.4e-30  Score=215.08  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=126.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch---hhccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG---EIRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~---~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|.+||+.+|+|.||||||||+++|.|+++|++|+|.++|+.+.   .....+..||+++|++  .+.+++.+|+.+..
T Consensus        25 l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~  104 (501)
T COG3845          25 LSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGL  104 (501)
T ss_pred             eeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcC
Confidence            679999999999999999999999999999999999999999863   2234466799999998  56788899977765


Q ss_pred             CCCC--CCCcccceeeehhhhhhhccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           76 PESY--RWPTVGRYKVDVASFEAIALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~l~~~~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ....  ............+..+++|+.        +++            |..+|++|||||| +-|-|.....+..+++
T Consensus       105 e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~  184 (501)
T COG3845         105 EPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR  184 (501)
T ss_pred             ccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            4321  111122223445566666654        111            8899999999999 4899999899999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |+|||++      ||.+.++.++||++
T Consensus       185 ~l~~~G~tIi~I------THKL~Ev~~iaDrv  210 (501)
T COG3845         185 RLAAEGKTIIFI------THKLKEVMAIADRV  210 (501)
T ss_pred             HHHHCCCEEEEE------eccHHHHHHhhCee
Confidence            9887 9999999      99999999999994

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.9e-30  Score=207.73  Aligned_cols=157  Identities=13%  Similarity=0.183  Sum_probs=115.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....   ..+..++|+||++  .+..++.+++.+..
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  105 (255)
T PRK11300         26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQ  105 (255)
T ss_pred             eEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhh
Confidence            578999999999999999999999999999999999999998864221   1234588999976  23345556544321


Q ss_pred             CCC---------CC---CCcc--cceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCcc
Q 029421           76 PES---------YR---WPTV--GRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKME  120 (193)
Q Consensus        76 ~~~---------~~---~~~~--~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD  120 (193)
                      ...         ..   ....  .......+.++.+++...        +            ++.+|+++||||| ++||
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD  185 (255)
T PRK11300        106 HQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN  185 (255)
T ss_pred             hccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence            100         00   0000  001123345556665432        1            8899999999999 6999


Q ss_pred             ccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          121 LFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       121 ~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.++..+.+++..++ + |.|||++      ||+.+++..+||++
T Consensus       186 ~~~~~~l~~~L~~~~~~~~~tii~~------sH~~~~~~~~~d~i  224 (255)
T PRK11300        186 PKETKELDELIAELRNEHNVTVLLI------EHDMKLVMGISDRI  224 (255)
T ss_pred             HHHHHHHHHHHHHHHhhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            999999999998875 4 8999999      99999999999984

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.1e-30  Score=208.81  Aligned_cols=157  Identities=14%  Similarity=0.186  Sum_probs=116.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|+++...  ...+..++|+||++.  ...+..+++.+...
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~  107 (265)
T PRK10253         28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRY  107 (265)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcc
Confidence            67899999999999999999999999999999999999999876432  222457999999863  22345555433211


Q ss_pred             CCC---CCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 ESY---RWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~~~---~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ...   ............+.++.+++.+.        +            ++.+|+++||||| ++||+.++..+.+++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~  187 (265)
T PRK10253        108 PHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS  187 (265)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            000   00001111223455566665432        1            8899999999999 6999999999999998


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |.|||++      |||++++.++||++
T Consensus       188 ~l~~~~~~tiii~------tH~~~~~~~~~d~i  214 (265)
T PRK10253        188 ELNREKGYTLAAV------LHDLNQACRYASHL  214 (265)
T ss_pred             HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            875 3 8999999      99999999999984

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.3e-30  Score=206.60  Aligned_cols=154  Identities=12%  Similarity=0.102  Sum_probs=113.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecC--CcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD--DRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~--~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....   ..++.++|++|++.  +..++.+++.+..
T Consensus        26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  105 (237)
T PRK11614         26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGG  105 (237)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhh
Confidence            578999999999999999999999999999999999999998864321   23457999999762  2345555543321


Q ss_pred             CCCCCCCcccceeeehhhhhhh-ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAI-ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~-~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      .. ..  .........+.++.+ ++.        .++            ++.+|+++||||| ++||+.++..+.++++.
T Consensus       106 ~~-~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~  182 (237)
T PRK11614        106 FF-AE--RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ  182 (237)
T ss_pred             hc-cC--hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            10 00  000011112222333 121        111            7889999999999 69999999999999998


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++ |.|||++      |||++++.++||++
T Consensus       183 ~~~~~~tiii~------sH~~~~~~~~~d~i  207 (237)
T PRK11614        183 LREQGMTIFLV------EQNANQALKLADRG  207 (237)
T ss_pred             HHHCCCEEEEE------eCcHHHHHhhCCEE
Confidence            866 9999999      99999999999984

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.96  E-value=2.2e-30  Score=205.47  Aligned_cols=156  Identities=15%  Similarity=0.229  Sum_probs=117.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|+||++  ++..+..+++.+... .
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~-~   99 (237)
T TIGR00968        21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLE-I   99 (237)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHH-h
Confidence            5789999999999999999999999999999999999999988753333356799999986  223455555433211 0


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                      .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++ 
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~  179 (237)
T TIGR00968       100 RKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE  179 (237)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence            001111111223455666665321        1            8899999999999 69999999999999988754 


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      ||+.+++.++||++
T Consensus       180 ~~~tvli~------sH~~~~~~~~~d~i  201 (237)
T TIGR00968       180 VHVTTVFV------THDQEEAMEVADRI  201 (237)
T ss_pred             cCCEEEEE------eCCHHHHHhhcCEE
Confidence             8999999      99999999999984

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.96  E-value=3.3e-30  Score=224.37  Aligned_cols=157  Identities=12%  Similarity=0.097  Sum_probs=119.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|.++...   ...++.++|++|++  .+..++.+++.+..
T Consensus        25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  104 (501)
T PRK10762         25 LNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGR  104 (501)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcc
Confidence            67899999999999999999999999999999999999999886321   11245699999986  33446666654432


Q ss_pred             CCC--CC-CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           76 PES--YR-WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        76 ~~~--~~-~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      ...  .. ...........+.++.+++.+..                    ++.+|++|||||| ++||+.++..+.+++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  184 (501)
T PRK10762        105 EFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI  184 (501)
T ss_pred             ccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence            110  00 01111112344567777765431                    8899999999999 699999999999999


Q ss_pred             HHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+++ |.|||++      |||++++..+||++
T Consensus       185 ~~l~~~~~tvii~------sHd~~~~~~~~d~i  211 (501)
T PRK10762        185 RELKSQGRGIVYI------SHRLKEIFEICDDV  211 (501)
T ss_pred             HHHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence            98866 8999999      99999999999984

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.1e-30  Score=210.22  Aligned_cols=173  Identities=14%  Similarity=0.231  Sum_probs=126.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-c----CCCCeEEeceEchhh------ccCCceeeEEEeecCCcccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-A----SNPSLKVQGFYTGEI------RQGGQRVGFEVVTLDDRRAPLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~----~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~~~~~~~~   69 (193)
                      |++++||++||+|.|||||||+.+.|+|+++ |    .+|+|.++|+++...      +.++++|+++||++...+++..
T Consensus        26 ~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~  105 (316)
T COG0444          26 FELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM  105 (316)
T ss_pred             EEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh
Confidence            6799999999999999999999999999998 3    578999999975221      2346789999999843333332


Q ss_pred             cccCCCCCCCC----C-Ccccceeeehhhhhhhcccccc-----------------------cCCCCCEEEEecC-CCcc
Q 029421           70 SINASSPESYR----W-PTVGRYKVDVASFEAIALPELQ-----------------------VGADTDLFVIDEV-GKME  120 (193)
Q Consensus        70 ~~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~l~~~~-----------------------l~~~p~llllDEp-~~LD  120 (193)
                      .+.....+...    . ...+....+.+.++.+++.+-.                       ++.+|++||+||| ++||
T Consensus       106 ~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALD  185 (316)
T COG0444         106 TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD  185 (316)
T ss_pred             hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhh
Confidence            22111111110    1 1112234566788888876431                       8899999999999 6999


Q ss_pred             ccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEE--EeCCCChhHHH
Q 029421          121 LFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIF--TLSPGNRDSLK  179 (193)
Q Consensus       121 ~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~--~~~~~~~~~l~  179 (193)
                      ...+.++.++++.+++  |.++|++      |||+..+.++||++.+...  .++.++.+++.
T Consensus       186 vt~QaqIl~Ll~~l~~e~~~aiilI------THDl~vva~~aDri~VMYaG~iVE~g~~~~i~  242 (316)
T COG0444         186 VTVQAQILDLLKELQREKGTALILI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIF  242 (316)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence            9999999999999874  9999999      9999999999999654332  33444444443

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.96  E-value=2e-30  Score=205.67  Aligned_cols=156  Identities=17%  Similarity=0.187  Sum_probs=112.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEee-c--CCcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVT-L--DDRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~-~--~~~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.... ...++.++|++|+ +  ....++.+++.+...
T Consensus        42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~  121 (236)
T cd03267          42 FTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA  121 (236)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999875321 2234678999843 2  223344444322111


Q ss_pred             CCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                       ..............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.++
T Consensus       122 -~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  200 (236)
T cd03267         122 -IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN  200 (236)
T ss_pred             -HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence             0001111111122344555555321        1            8899999999999 6999999999999999875


Q ss_pred             -C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 -S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       + |.|||++      ||+.+++..+||++
T Consensus       201 ~~~~~tiiiv------sH~~~~~~~~~d~i  224 (236)
T cd03267         201 RERGTTVLLT------SHYMKDIEALARRV  224 (236)
T ss_pred             hcCCCEEEEE------ecCHHHHHHhCCEE
Confidence             4 8999999      99999999999984

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.96  E-value=1.5e-30  Score=215.40  Aligned_cols=157  Identities=15%  Similarity=0.196  Sum_probs=114.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhh-----cc-CCceeeEEEeecC----Ccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEI-----RQ-GGQRVGFEVVTLD----DRRAP   67 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~-----~~-~~~~ig~~~q~~~----~~~~~   67 (193)
                      |+|++||+++|+|+||||||||+++|+|+++|+   +|+|.++|.++...     +. .++.++|+||++.    +.++.
T Consensus        37 l~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v  116 (330)
T PRK09473         37 FSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRV  116 (330)
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCH
Confidence            678999999999999999999999999999996   99999999986322     11 2357999999862    22233


Q ss_pred             cccccCCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCccccc
Q 029421           68 LASINASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMELFS  123 (193)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~~~  123 (193)
                      .+++....................+.++.+++.+           ++            ++.+|++||+||| ++||+.+
T Consensus       117 ~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~  196 (330)
T PRK09473        117 GEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTV  196 (330)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence            2222111100000111111223445566666542           11            8899999999999 6999999


Q ss_pred             cchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          124 SSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       124 ~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +..+.++++.+++  |.|+|++      |||+..+.++||++
T Consensus       197 ~~~i~~lL~~l~~~~g~til~i------THdl~~~~~~~Dri  232 (330)
T PRK09473        197 QAQIMTLLNELKREFNTAIIMI------THDLGVVAGICDKV  232 (330)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEE------ECCHHHHHHhCCEE
Confidence            9999999998854  8999999      99999999999995

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.96  E-value=2.7e-30  Score=203.20  Aligned_cols=156  Identities=16%  Similarity=0.277  Sum_probs=111.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe--ce--Echhhc-----c-CCceeeEEEeecC--Cccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ--GF--YTGEIR-----Q-GGQRVGFEVVTLD--DRRAPL   68 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~--g~--~~~~~~-----~-~~~~ig~~~q~~~--~~~~~~   68 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++  |.  ++....     . .++.++|++|++.  +..++.
T Consensus        29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~  108 (224)
T TIGR02324        29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSAL  108 (224)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHH
Confidence            5789999999999999999999999999999999999998  42  332111     1 2356999999862  233444


Q ss_pred             ccccCCCCCCCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccch
Q 029421           69 ASINASSPESYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      +++.+..... ............+.++.+++..         ++            ++.+|+++||||| ++||+.++..
T Consensus       109 e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~  187 (224)
T TIGR02324       109 EVVAEPLLER-GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV  187 (224)
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            4433211100 0110011112334455555432         11            7889999999999 6999999999


Q ss_pred             HHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          127 FPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       127 ~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.++++.+++ |.|||++      ||+.+.+..+||++
T Consensus       188 l~~~l~~~~~~g~tii~v------sH~~~~~~~~~d~i  219 (224)
T TIGR02324       188 VVELIAEAKARGAALIGI------FHDEEVRELVADRV  219 (224)
T ss_pred             HHHHHHHHHhcCCEEEEE------eCCHHHHHHhccee
Confidence            9999998876 9999999      99998898999983

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.5e-30  Score=206.68  Aligned_cols=157  Identities=12%  Similarity=0.129  Sum_probs=114.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeec--CCcccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTL--DDRRAPLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~--~~~~~~~~   69 (193)
                      |+|++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++..    ....++.++|++|++  .+..++.+
T Consensus        25 l~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~  104 (258)
T PRK14241         25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRD  104 (258)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHH
Confidence            57899999999999999999999999999974     69999999987631    123356799999976  23345555


Q ss_pred             cccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421           70 SINASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      ++.+..................++++.+++.            .++            ++.+|+++||||| ++||+.++
T Consensus       105 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  184 (258)
T PRK14241        105 NVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST  184 (258)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            5433211000001111111223444444441            111            7899999999999 69999999


Q ss_pred             chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+.++++.++++.|||++      ||+++++.++||++
T Consensus       185 ~~l~~~l~~~~~~~tviiv------sH~~~~~~~~~d~i  217 (258)
T PRK14241        185 LAIEDLINELKQDYTIVIV------THNMQQAARVSDQT  217 (258)
T ss_pred             HHHHHHHHHHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence            9999999988667899999      99999999999984

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.5e-30  Score=204.21  Aligned_cols=152  Identities=15%  Similarity=0.236  Sum_probs=114.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.. ..+..+++.+....
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~  103 (241)
T PRK14250         24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML  103 (241)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhh
Confidence            57899999999999999999999999999999999999999886421  2234679999998621 13444443322110


Q ss_pred             CCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                       .  .  .......+.++.+++. .+        +            ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus       104 -~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  178 (241)
T PRK14250        104 -K--G--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK  178 (241)
T ss_pred             -c--C--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence             0  0  0011233455555553 21        1            7899999999999 6999999999999998875


Q ss_pred             -C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 -S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       + |.|||++      |||.+++.++||++
T Consensus       179 ~~~g~tii~~------sH~~~~~~~~~d~i  202 (241)
T PRK14250        179 NKMNLTVIWI------THNMEQAKRIGDYT  202 (241)
T ss_pred             HhCCCEEEEE------eccHHHHHHhCCEE
Confidence             3 8999999      99999999999984

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.9e-30  Score=211.48  Aligned_cols=156  Identities=15%  Similarity=0.204  Sum_probs=114.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-------hccCCceeeEEEeecC---Cccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-------IRQGGQRVGFEVVTLD---DRRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-------~~~~~~~ig~~~q~~~---~~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..       ....++.++|++|++.   ...+..++
T Consensus        32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en  111 (289)
T PRK13645         32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKD  111 (289)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHH
Confidence            5789999999999999999999999999999999999999987531       1223467999999852   11244444


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      +.+.... .............+.++.+++. .+        +            ++.+|++|||||| ++||+.++..+.
T Consensus       112 l~~~~~~-~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~  190 (289)
T PRK13645        112 IAFGPVN-LGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI  190 (289)
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence            4322110 0011111111223455555552 21        1            7899999999999 699999999999


Q ss_pred             HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+. + |+|||++      ||+++++.++||++
T Consensus       191 ~~l~~~~~~~~~tiiii------sH~~~~~~~~~d~i  221 (289)
T PRK13645        191 NLFERLNKEYKKRIIMV------THNMDQVLRIADEV  221 (289)
T ss_pred             HHHHHHHHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence            9998875 4 8999999      99999999999984

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=2.1e-30  Score=201.29  Aligned_cols=151  Identities=15%  Similarity=0.122  Sum_probs=112.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++  .+..++.+++.+....
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~  101 (204)
T PRK13538         22 FTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRL  101 (204)
T ss_pred             EEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999886422 22345789998865  2234555554332111


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      . .  . .......+.++.+++...        +            ++.+|+++++||| ++||+.++..+.++++.+++
T Consensus       102 ~-~--~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  177 (204)
T PRK13538        102 H-G--P-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE  177 (204)
T ss_pred             c-C--c-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            0 0  0 111223345565555422        1            8899999999999 69999999999999998865


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhc
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRN  161 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d  161 (193)
                       |.|||++      |||..++.++..
T Consensus       178 ~~~tiii~------sh~~~~i~~~~~  197 (204)
T PRK13538        178 QGGMVILT------THQDLPVASDKV  197 (204)
T ss_pred             CCCEEEEE------ecChhhhccCCc
Confidence             8999999      999988876433

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8e-30  Score=206.15  Aligned_cols=156  Identities=13%  Similarity=0.183  Sum_probs=112.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--c--ccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--R--RAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~--~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+..++|+||++..  .  ....+++.+...
T Consensus        28 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~  106 (272)
T PRK15056         28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA-LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY  106 (272)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh-hccceEEEeccccccccCCCcchhhheecccc
Confidence            57899999999999999999999999999999999999999886421 123469999997521  1  111222211100


Q ss_pred             C---CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           77 E---SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ~---~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .   ..............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~  186 (272)
T PRK15056        107 GHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR  186 (272)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            0   0000001111123345566665432        1            7899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      |||.+++..+||++
T Consensus       187 ~~~~~g~tviiv------sH~~~~~~~~~d~v  212 (272)
T PRK15056        187 ELRDEGKTMLVS------THNLGSVTEFCDYT  212 (272)
T ss_pred             HHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence            8866 9999999      99999999999983

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.96  E-value=2.4e-30  Score=203.11  Aligned_cols=156  Identities=18%  Similarity=0.169  Sum_probs=114.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cCCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QGGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....     ..++.++|++|++.  ...+..+++.+
T Consensus        26 ~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~  105 (220)
T TIGR02982        26 LEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQM  105 (220)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHH
Confidence            578999999999999999999999999999999999999998864321     23467999999862  23455555433


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ..................+.++.+++....                    ++.+|+++||||| ++||+.++..+.++++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~  185 (220)
T TIGR02982       106 ALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ  185 (220)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence            211000011111112344566666664321                    8899999999999 6999999999999998


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |.|||++      ||+.+. .++||++
T Consensus       186 ~~~~~~~~tii~~------sh~~~~-~~~~d~v  211 (220)
T TIGR02982       186 KLAREQGCTILIV------THDNRI-LDVADRI  211 (220)
T ss_pred             HHHHHcCCEEEEE------eCCHHH-HhhCCEE
Confidence            875 3 8999999      999874 5788873

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.1e-30  Score=205.81  Aligned_cols=157  Identities=13%  Similarity=0.152  Sum_probs=114.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++..    ....++.++|++|++.. ..+..++
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  107 (254)
T PRK14273         28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDN  107 (254)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHH
Confidence            67899999999999999999999999999987     48999999987631    12235679999998632 2455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~  187 (254)
T PRK14273        108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTG  187 (254)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence            543221100001001112223344444431            121            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+++++..+||++
T Consensus       188 ~l~~~l~~~~~~~tvii~------sH~~~~~~~~~d~i  219 (254)
T PRK14273        188 KIEELIINLKESYTIIIV------THNMQQAGRISDRT  219 (254)
T ss_pred             HHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            999999988668999999      99999999999984

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.96  E-value=3.1e-30  Score=204.36  Aligned_cols=156  Identities=13%  Similarity=0.228  Sum_probs=116.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++......++.++|++|++.  +..+..+++.+.....
T Consensus        20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~   99 (235)
T cd03299          20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR   99 (235)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999999999887543333567999999862  2345555543321110


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                       ............+.++.+++...        +            ++.+|+++++||| ++||+.++..+.++++.+. +
T Consensus       100 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~  178 (235)
T cd03299         100 -KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE  178 (235)
T ss_pred             -CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence             00011111123345556665422        1            8899999999999 6999999999999998875 3


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      ||+++++..+||++
T Consensus       179 ~~~tili~------tH~~~~~~~~~d~i  200 (235)
T cd03299         179 FGVTVLHV------THDFEEAWALADKV  200 (235)
T ss_pred             cCCEEEEE------ecCHHHHHHhCCEE
Confidence             8999999      99999999999984

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.9e-30  Score=205.79  Aligned_cols=157  Identities=12%  Similarity=0.167  Sum_probs=112.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++     |++|+|.++|+++..    ....++.++|++|++.. ..++.++
T Consensus        27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  106 (253)
T PRK14242         27 LEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFEN  106 (253)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHH
Confidence            5789999999999999999999999999974     589999999987632    11234679999998621 1355555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~  186 (253)
T PRK14242        107 VAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ  186 (253)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            433211000000000111222334444431            121            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      |||++++.++||++
T Consensus       187 ~l~~~l~~~~~~~tvii~------tH~~~~~~~~~d~v  218 (253)
T PRK14242        187 KIEELIHELKARYTIIIV------THNMQQAARVSDVT  218 (253)
T ss_pred             HHHHHHHHHhcCCeEEEE------EecHHHHHHhCCEE
Confidence            999999988668999999      99999999999984

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.96  E-value=2e-29  Score=200.97  Aligned_cols=141  Identities=15%  Similarity=0.268  Sum_probs=105.9

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPESY   79 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~~   79 (193)
                      +|++|++++|+||||||||||+++|+|+++|++|+|.++|.          .++|++|++.  ...++.+++........
T Consensus        21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~   90 (246)
T cd03237          21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----------TVSYKPQYIKADYEGTVRDLLSSITKDFY   90 (246)
T ss_pred             CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----------eEEEecccccCCCCCCHHHHHHHHhhhcc
Confidence            57789999999999999999999999999999999999873          5889998763  22344444322110000


Q ss_pred             CCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C-
Q 029421           80 RWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S-  136 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~-  136 (193)
                        .   ......++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+. + 
T Consensus        91 --~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  165 (246)
T cd03237          91 --T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN  165 (246)
T ss_pred             --c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence              0   00112334444444321        1            8899999999999 6999999999999999875 3 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |+|||++      |||++.+..+||++
T Consensus       166 ~~tiiiv------sHd~~~~~~~~d~i  186 (246)
T cd03237         166 EKTAFVV------EHDIIMIDYLADRL  186 (246)
T ss_pred             CCEEEEE------eCCHHHHHHhCCEE
Confidence            8999999      99999999999984

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.1e-30  Score=203.96  Aligned_cols=157  Identities=11%  Similarity=0.091  Sum_probs=116.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh--hccCCceeeEEEeec--CCcccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE--IRQGGQRVGFEVVTL--DDRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~--~~~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++..  ....++.+||+||++  ....++.+++
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl  103 (250)
T PRK14247         24 LEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV  103 (250)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHH
Confidence            67899999999999999999999999999974     79999999988642  123356799999986  2335666665


Q ss_pred             cCCCCCCCCC-Ccccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421           72 NASSPESYRW-PTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        72 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .+........ ..........+.++.+++..            ++            ++.+|++++|||| ++||+.++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~  183 (250)
T PRK14247        104 ALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA  183 (250)
T ss_pred             HHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence            4322100000 00111122334555555421            11            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+.+|.|+|++      ||+++++..+||++
T Consensus       184 ~l~~~l~~~~~~~tiii~------sH~~~~~~~~~d~i  215 (250)
T PRK14247        184 KIESLFLELKKDMTIVLV------THFPQQAARISDYV  215 (250)
T ss_pred             HHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence            999999988668999999      99999999999984

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.96  E-value=1.2e-29  Score=204.10  Aligned_cols=157  Identities=15%  Similarity=0.252  Sum_probs=116.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhh-------ccCCceeeEEEeec--CCccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEI-------RQGGQRVGFEVVTL--DDRRAPL   68 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~-------~~~~~~ig~~~q~~--~~~~~~~   68 (193)
                      |++.+|++++|+||||||||||+++|+|+++|+   +|+|.++|.++...       ...++.++|+||++  .+..+..
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~  104 (262)
T PRK09984         25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVL  104 (262)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHH
Confidence            578999999999999999999999999999986   49999999876321       12245799999986  2334555


Q ss_pred             ccccCCCCCCC-------CCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcc
Q 029421           69 ASINASSPESY-------RWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKME  120 (193)
Q Consensus        69 ~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD  120 (193)
                      +++.+......       .+..........+.++.+++....                    ++.+|+++||||| ++||
T Consensus       105 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD  184 (262)
T PRK09984        105 ENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLD  184 (262)
T ss_pred             HHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCC
Confidence            55543221000       000111112344566666664321                    7899999999999 6999


Q ss_pred             ccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          121 LFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       121 ~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.++..+.++++.++ + |.|||++      |||.+++..+||++
T Consensus       185 ~~~~~~l~~~l~~~~~~~g~tvii~------tH~~~~~~~~~d~i  223 (262)
T PRK09984        185 PESARIVMDTLRDINQNDGITVVVT------LHQVDYALRYCERI  223 (262)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            999999999999885 4 8999999      99999999999984

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.9e-30  Score=203.94  Aligned_cols=157  Identities=15%  Similarity=0.187  Sum_probs=114.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc--c---CCCCeEEeceEchh----hccCCceeeEEEeecC--Ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK--A---SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD--DRRAPLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~---~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~--~~~~~~~   69 (193)
                      |+|++|++++|+||||||||||+++|+|+++  |   ++|+|.++|.++..    ....++.++|+||++.  ...+..+
T Consensus        25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  104 (252)
T PRK14256         25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYD  104 (252)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHH
Confidence            5789999999999999999999999999986  4   68999999988642    1233567999999862  2345555


Q ss_pred             cccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421           70 SINASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      ++.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++
T Consensus       105 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~  184 (252)
T PRK14256        105 NVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST  184 (252)
T ss_pred             HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            5433211100000111111223444444442            122            7899999999999 69999999


Q ss_pred             chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+.++++.+.++.|||++      ||+++++.++||++
T Consensus       185 ~~l~~~l~~~~~~~tiiiv------sH~~~~~~~~~d~i  217 (252)
T PRK14256        185 LKIEELIEELKEKYTIIIV------THNMQQAARVSDYT  217 (252)
T ss_pred             HHHHHHHHHHHhCCcEEEE------ECCHHHHHhhCCEE
Confidence            9999999988767899999      99999999999984

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.2e-30  Score=222.14  Aligned_cols=157  Identities=13%  Similarity=0.140  Sum_probs=119.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|  ++|+|.++|.++....   ..++.+||+||++  .+..++.+++.+
T Consensus        26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  105 (506)
T PRK13549         26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFL  105 (506)
T ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhh
Confidence            67899999999999999999999999999996  8999999998864221   1245699999986  234566666544


Q ss_pred             CCCCCC-C-CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHH
Q 029421           74 SSPESY-R-WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAV  130 (193)
Q Consensus        74 ~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~l  130 (193)
                      ...... . ...........++++.+++....                    ++.+|+++||||| ++||+.++..+.++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~  185 (506)
T PRK13549        106 GNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI  185 (506)
T ss_pred             cccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence            321110 0 11111112345667777765321                    8899999999999 69999999999999


Q ss_pred             HHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          131 LRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       131 l~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +..+++ |.|||++      |||++.+..+||++
T Consensus       186 l~~l~~~~~tvi~~------tH~~~~~~~~~d~v  213 (506)
T PRK13549        186 IRDLKAHGIACIYI------SHKLNEVKAISDTI  213 (506)
T ss_pred             HHHHHHCCCEEEEE------eCcHHHHHHhcCEE
Confidence            998865 8999999      99999999999983

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.96  E-value=1.5e-29  Score=191.70  Aligned_cols=138  Identities=14%  Similarity=0.247  Sum_probs=104.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.. ..+..+++      
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l------   96 (173)
T cd03246          23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------   96 (173)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC------
Confidence            57899999999999999999999999999999999999999876422  2234679999987521 11222221      


Q ss_pred             CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~  155 (193)
                         ..        .-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+++ |.|||++      |||.+.
T Consensus        97 ---LS--------~G~~qrv~la-~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~------sh~~~~  158 (173)
T cd03246          97 ---LS--------GGQRQRLGLA-RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI------AHRPET  158 (173)
T ss_pred             ---cC--------HHHHHHHHHH-HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEE------eCCHHH
Confidence               00        0011122221 236889999999999 69999999999999998866 9999999      999987


Q ss_pred             HHHHhcCC
Q 029421          156 VARLRNHP  163 (193)
Q Consensus       156 ~~~~~d~~  163 (193)
                      + .+||++
T Consensus       159 ~-~~~d~v  165 (173)
T cd03246         159 L-ASADRI  165 (173)
T ss_pred             H-HhCCEE
Confidence            7 478873

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.7e-30  Score=222.17  Aligned_cols=157  Identities=11%  Similarity=0.141  Sum_probs=118.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++....   ..++.++|++|++  .+..++.+++.+..
T Consensus        26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  105 (510)
T PRK09700         26 LTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGR  105 (510)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcc
Confidence            678999999999999999999999999999999999999998864221   1234699999986  23345556554322


Q ss_pred             CCC---CCC---Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           76 PES---YRW---PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        76 ~~~---~~~---~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ...   ...   ..........+.++.+++....                    ++.+|+++||||| ++||+.++..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~  185 (510)
T PRK09700        106 HLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF  185 (510)
T ss_pred             ccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence            100   010   0001112344566777765321                    8899999999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+++ |.|||++      |||++++..+||++
T Consensus       186 ~~l~~l~~~g~tiiiv------sHd~~~~~~~~d~v  215 (510)
T PRK09700        186 LIMNQLRKEGTAIVYI------SHKLAEIRRICDRY  215 (510)
T ss_pred             HHHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence            99999876 9999999      99999999999984

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.2e-30  Score=204.81  Aligned_cols=157  Identities=14%  Similarity=0.154  Sum_probs=113.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++     |++|+|.++|.++..    ....+++++|+||++.. ..+..++
T Consensus        34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n  113 (260)
T PRK10744         34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDN  113 (260)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHH
Confidence            5789999999999999999999999999986     589999999988632    12235679999998621 1355555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       114 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  193 (260)
T PRK10744        114 IAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTG  193 (260)
T ss_pred             HhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHH
Confidence            433211000111111111233444444431            121            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+++.+..+||++
T Consensus       194 ~l~~~L~~~~~~~tiii~------sH~~~~~~~~~d~i  225 (260)
T PRK10744        194 RIEELITELKQDYTVVIV------THNMQQAARCSDYT  225 (260)
T ss_pred             HHHHHHHHHhcCCeEEEE------eCCHHHHHHhCCEE
Confidence            999999988668899999      99999999999984

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=2.7e-29  Score=185.64  Aligned_cols=154  Identities=17%  Similarity=0.218  Sum_probs=123.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |.|++||.++|+||||||||||+-+++|+..|++|+|++.|++....      ....+++||+||.+  .+.++.++|..
T Consensus        31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~  110 (228)
T COG4181          31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA  110 (228)
T ss_pred             EEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhcc
Confidence            46899999999999999999999999999999999999999986432      23467899999987  56778888877


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      ++...... ...+......+.++++|+....                    ++..|++|+.||| ++||...-..+.+++
T Consensus       111 lPleL~ge-~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLl  189 (228)
T COG4181         111 LPLELRGE-SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL  189 (228)
T ss_pred             chhhhcCC-ccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHH
Confidence            76543221 2223334466788888876432                    8899999999999 599999988888888


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      -.+. + |.|+++|      |||...+. -|+|
T Consensus       190 F~lnre~G~TlVlV------THD~~LA~-Rc~R  215 (228)
T COG4181         190 FALNRERGTTLVLV------THDPQLAA-RCDR  215 (228)
T ss_pred             HHHhhhcCceEEEE------eCCHHHHH-hhhh
Confidence            8775 4 9999999      99976555 5777

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.7e-30  Score=208.33  Aligned_cols=155  Identities=13%  Similarity=0.179  Sum_probs=114.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecCC---cccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDD---RRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~---~~~~~~~~~~~   74 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...   ...++.+||+||++..   ..++.+++.+.
T Consensus        31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~  110 (280)
T PRK13633         31 LEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG  110 (280)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhh
Confidence            57899999999999999999999999999999999999999886431   2335679999998621   12333333322


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      ... .............++++.+++....                    ++.+|+++||||| +|||+.++..+.++++.
T Consensus       111 ~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~  189 (280)
T PRK13633        111 PEN-LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKE  189 (280)
T ss_pred             Hhh-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            110 0111111112234556666654321                    8899999999999 69999999999999998


Q ss_pred             Hh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++ + |.|||++      ||+++.+.. ||++
T Consensus       190 l~~~~g~tillv------tH~~~~~~~-~d~v  214 (280)
T PRK13633        190 LNKKYGITIILI------THYMEEAVE-ADRI  214 (280)
T ss_pred             HHHhcCCEEEEE------ecChHHHhc-CCEE
Confidence            85 4 8999999      999998875 8884

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=2.2e-29  Score=189.11  Aligned_cols=127  Identities=16%  Similarity=0.230  Sum_probs=102.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecCCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~   77 (193)
                      |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...   ...++.++|++|             +    
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-------------L----   83 (163)
T cd03216          21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ-------------L----   83 (163)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-------------c----
Confidence            57899999999999999999999999999999999999999886432   123456889887             0    


Q ss_pred             CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~  155 (193)
                      ..     +       ..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+++ |.|+|++      |||.++
T Consensus        84 S~-----G-------~~qrl~la-ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~------sh~~~~  144 (163)
T cd03216          84 SV-----G-------ERQMVEIA-RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI------SHRLDE  144 (163)
T ss_pred             CH-----H-------HHHHHHHH-HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE------eCCHHH
Confidence            00     0       01111111 126789999999999 69999999999999998865 8999999      999999


Q ss_pred             HHHHhcCC
Q 029421          156 VARLRNHP  163 (193)
Q Consensus       156 ~~~~~d~~  163 (193)
                      +.++||++
T Consensus       145 ~~~~~d~~  152 (163)
T cd03216         145 VFEIADRV  152 (163)
T ss_pred             HHHhCCEE
Confidence            99999983

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.5e-29  Score=220.67  Aligned_cols=157  Identities=13%  Similarity=0.158  Sum_probs=118.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec-----CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL-----DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~-----~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...   ...++++||+||++     .+..++.+++.
T Consensus       284 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~  363 (510)
T PRK09700        284 FSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMA  363 (510)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhc
Confidence            67899999999999999999999999999999999999999876321   12235799999963     23345666654


Q ss_pred             CCCCCC---C----CC-Ccccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421           73 ASSPES---Y----RW-PTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELF  122 (193)
Q Consensus        73 ~~~~~~---~----~~-~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~  122 (193)
                      +.....   .    .. ..........++++.+++. +..                    ++.+|++|||||| ++||+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~  443 (510)
T PRK09700        364 ISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG  443 (510)
T ss_pred             cccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHH
Confidence            322100   0    00 0111112234667777774 321                    7899999999999 699999


Q ss_pred             ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++..+.++++.+++ |.|||++      |||++++..+||++
T Consensus       444 ~~~~l~~~l~~l~~~g~tvi~v------sHd~~~~~~~~d~i  479 (510)
T PRK09700        444 AKAEIYKVMRQLADDGKVILMV------SSELPEIITVCDRI  479 (510)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEE------cCCHHHHHhhCCEE
Confidence            99999999998866 9999999      99999999999983

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.9e-30  Score=207.29  Aligned_cols=155  Identities=12%  Similarity=0.170  Sum_probs=114.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec---CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL---DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~---~~~~~~~~~~~~~~   75 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++   ....++.+++.+..
T Consensus        30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~  109 (271)
T PRK13632         30 FEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL  109 (271)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHH
Confidence            57899999999999999999999999999999999999999887422  23356799999985   22345666654321


Q ss_pred             CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .. .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       110 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~  188 (271)
T PRK13632        110 EN-KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDL  188 (271)
T ss_pred             HH-cCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            10 001111111223445566665422        1            8899999999999 699999999999999987


Q ss_pred             hC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++  +.|||++      ||+.+.+. .||++
T Consensus       189 ~~~~~~tiii~------sH~~~~~~-~~d~v  212 (271)
T PRK13632        189 RKTRKKTLISI------THDMDEAI-LADKV  212 (271)
T ss_pred             HHhcCcEEEEE------EechhHHh-hCCEE
Confidence            64  5899999      99998885 78884

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.1e-29  Score=220.60  Aligned_cols=157  Identities=12%  Similarity=0.146  Sum_probs=118.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecC--CcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLD--DRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~--~~~~~~~~~~~~~   75 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...   ...++.++|+||++.  ...++.+++.+..
T Consensus        19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~   98 (491)
T PRK10982         19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGR   98 (491)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccc
Confidence            57899999999999999999999999999999999999999886321   122457999999862  3345566554322


Q ss_pred             CCCCCC--Ccccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           76 PESYRW--PTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        76 ~~~~~~--~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ......  ..........+.++.+++...        +            ++.+|++|||||| ++||+.++..+.++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  178 (491)
T PRK10982         99 YPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIR  178 (491)
T ss_pred             ccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            111010  111111233455666666432        1            8899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      |||++++..+||++
T Consensus       179 ~l~~~g~tvii~------tH~~~~~~~~~d~i  204 (491)
T PRK10982        179 KLKERGCGIVYI------SHKMEEIFQLCDEI  204 (491)
T ss_pred             HHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence            8866 9999999      99999999999984

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.3e-30  Score=204.20  Aligned_cols=157  Identities=13%  Similarity=0.136  Sum_probs=113.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEch--h--hccCCceeeEEEeecC--Ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTG--E--IRQGGQRVGFEVVTLD--DRRAPLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~--~--~~~~~~~ig~~~q~~~--~~~~~~~   69 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|     ++|+|.++|.++.  .  ....++.++|++|++.  +..+..+
T Consensus        25 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  104 (253)
T PRK14267         25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD  104 (253)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHH
Confidence            57899999999999999999999999999987     4999999998864  1  1123457999999862  2345555


Q ss_pred             cccCCCCCCC-CCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccc
Q 029421           70 SINASSPESY-RWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFS  123 (193)
Q Consensus        70 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~  123 (193)
                      ++.+...... ............+.++.+++.            .++            ++.+|+++|+||| ++||+.+
T Consensus       105 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  184 (253)
T PRK14267        105 NVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVG  184 (253)
T ss_pred             HHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence            5433211000 000000111123344444431            111            7899999999999 6999999


Q ss_pred             cchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          124 SSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       124 ~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +..+.++++.+.++.|||++      ||+++++..+||++
T Consensus       185 ~~~l~~~l~~~~~~~tiii~------sH~~~~~~~~~d~i  218 (253)
T PRK14267        185 TAKIEELLFELKKEYTIVLV------THSPAQAARVSDYV  218 (253)
T ss_pred             HHHHHHHHHHHhhCCEEEEE------ECCHHHHHhhCCEE
Confidence            99999999988668899999      99999999999984

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.96  E-value=7.1e-30  Score=202.97  Aligned_cols=157  Identities=11%  Similarity=0.141  Sum_probs=110.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEeceEchhhc--c-CCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQGFYTGEIR--Q-GGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g~~~~~~~--~-~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+++|+|++  +|++|+|.++|.++....  . .+..++|++|++.  +..+..+++.+
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~  100 (243)
T TIGR01978        21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRS  100 (243)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHH
Confidence            678999999999999999999999999995  799999999998764321  1 2345899999863  22333333222


Q ss_pred             CCCCCCC------CCcccceeeehhhhhhhccc----------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421           74 SSPESYR------WPTVGRYKVDVASFEAIALP----------ELQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        74 ~~~~~~~------~~~~~~~~~~~~~l~~~~l~----------~~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      .......      ...........+.++.+++.          .++            ++.+|+++||||| ++||+.++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~  180 (243)
T TIGR01978       101 ALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDAL  180 (243)
T ss_pred             HHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence            1100000      00000011122333433332          122            7899999999999 69999999


Q ss_pred             chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421          125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~  163 (193)
                      ..+.++++.+++ |.|||++      |||++.+..+ ||++
T Consensus       181 ~~l~~~l~~~~~~~~tvi~v------sH~~~~~~~~~~d~i  215 (243)
T TIGR01978       181 KIVAEGINRLREPDRSFLII------THYQRLLNYIKPDYV  215 (243)
T ss_pred             HHHHHHHHHHHHCCcEEEEE------EecHHHHHhhcCCeE
Confidence            999999998875 8999999      9999999888 7884

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.96  E-value=1.3e-29  Score=221.08  Aligned_cols=152  Identities=13%  Similarity=0.158  Sum_probs=116.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....   ..+..+||++|++  .+..++.+++.+..
T Consensus        32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  111 (510)
T PRK15439         32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL  111 (510)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccc
Confidence            578999999999999999999999999999999999999998763211   1234699999986  23345555544322


Q ss_pred             CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      ..     .........+.++.+++...        +            ++.+|++|||||| ++||+.++..+.++++.+
T Consensus       112 ~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  186 (510)
T PRK15439        112 PK-----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIREL  186 (510)
T ss_pred             cc-----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            10     00111223455666666432        1            7899999999999 699999999999999988


Q ss_pred             hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++ |.|||++      |||++++..+||++
T Consensus       187 ~~~g~tiiiv------tHd~~~~~~~~d~i  210 (510)
T PRK15439        187 LAQGVGIVFI------SHKLPEIRQLADRI  210 (510)
T ss_pred             HHCCCEEEEE------eCCHHHHHHhCCEE
Confidence            66 9999999      99999999999984

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.96  E-value=7.2e-30  Score=201.11  Aligned_cols=156  Identities=17%  Similarity=0.163  Sum_probs=113.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK---ASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~---~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+++|+|+++   |++|+|.++|.++.. ...++.++|++|++  .+..++.+++.+..
T Consensus        28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~-~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  106 (226)
T cd03234          28 LHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP-DQFQKCVAYVRQDDILLPGLTVRETLTYTA  106 (226)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh-HHhcccEEEeCCCCccCcCCcHHHHHHHHH
Confidence            5789999999999999999999999999999   999999999987642 23456799999976  23345556554321


Q ss_pred             CCCC-CC-Ccccceeeehh-hhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           76 PESY-RW-PTVGRYKVDVA-SFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        76 ~~~~-~~-~~~~~~~~~~~-~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .... .. ..........+ .++.+++..        ++            ++.+|+++|+||| ++||+.++..+.+++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l  186 (226)
T cd03234         107 ILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL  186 (226)
T ss_pred             HhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            1000 00 00000011112 444444332        11            7889999999999 699999999999999


Q ss_pred             HHHhC-CCcEEEEecCCCCCCCh-hHHHHHhcCC
Q 029421          132 RILES-NIPVLASIPAPKSGRDI-PAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~-g~tvl~~~~~~~~tHd~-~~~~~~~d~~  163 (193)
                      +.+.+ |.|+|++      ||+. .++.++||++
T Consensus       187 ~~~~~~~~tiii~------sh~~~~~~~~~~d~i  214 (226)
T cd03234         187 SQLARRNRIVILT------IHQPRSDLFRLFDRI  214 (226)
T ss_pred             HHHHHCCCEEEEE------ecCCCHHHHHhCCEE
Confidence            98865 8999999      9998 5889999984

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.96  E-value=2.1e-29  Score=190.53  Aligned_cols=138  Identities=14%  Similarity=0.241  Sum_probs=104.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.. ..+..+++      
T Consensus        23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~l------   96 (171)
T cd03228          23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------   96 (171)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHh------
Confidence            57899999999999999999999999999999999999999876422  2234578999987521 11222221      


Q ss_pred             CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHH
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~  156 (193)
                         ..        .-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+.++.|+|++      ||+.+++
T Consensus        97 ---LS--------~G~~~rl~la-~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~------sh~~~~~  158 (171)
T cd03228          97 ---LS--------GGQRQRIAIA-RALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVI------AHRLSTI  158 (171)
T ss_pred             ---hC--------HHHHHHHHHH-HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEE------ecCHHHH
Confidence               00        0011122221 126789999999999 699999999999999988668999999      9999988


Q ss_pred             HHHhcCC
Q 029421          157 ARLRNHP  163 (193)
Q Consensus       157 ~~~~d~~  163 (193)
                      .. ||++
T Consensus       159 ~~-~d~~  164 (171)
T cd03228         159 RD-ADRI  164 (171)
T ss_pred             Hh-CCEE
Confidence            76 8873

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.4e-30  Score=205.20  Aligned_cols=156  Identities=14%  Similarity=0.148  Sum_probs=113.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++...    ...++.++|++|++.. ..+..++
T Consensus        33 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  112 (258)
T PRK14268         33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDN  112 (258)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHH
Confidence            57899999999999999999999999999985     799999999876321    1234679999997621 1455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+.... .............++++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       113 l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~  191 (258)
T PRK14268        113 VAYGPRI-HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA  191 (258)
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence            4332110 0111100111123344444431            111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+++|.|||++      |||++++.++||++
T Consensus       192 ~l~~~l~~l~~~~tiiiv------sH~~~~~~~~~d~i  223 (258)
T PRK14268        192 RIEDLIMNLKKDYTIVIV------THNMQQAARISDYT  223 (258)
T ss_pred             HHHHHHHHHhhCCEEEEE------ECCHHHHHHhCCEE
Confidence            999999988668999999      99999999999984

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.3e-30  Score=211.52  Aligned_cols=157  Identities=15%  Similarity=0.215  Sum_probs=115.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc----cCCCCeEEeceEchhhc------cCCceeeEEEeecCC----ccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK----ASNPSLKVQGFYTGEIR------QGGQRVGFEVVTLDD----RRA   66 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~----~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~~~----~~~   66 (193)
                      |+|.+||+++|+|+||||||||+++|+|+++    |++|+|.++|.++....      ..++.++|+||++..    ..+
T Consensus        28 l~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~t  107 (330)
T PRK15093         28 MTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER  107 (330)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcccc
Confidence            6799999999999999999999999999996    58999999999863211      123579999998632    222


Q ss_pred             ccccccCCCCC--C-CCC-Cc-ccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-C
Q 029421           67 PLASINASSPE--S-YRW-PT-VGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-G  117 (193)
Q Consensus        67 ~~~~~~~~~~~--~-~~~-~~-~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~  117 (193)
                      ..+++......  . ..+ .. ........+.++.+++..           ++            ++.+|++||+||| +
T Consensus       108 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts  187 (330)
T PRK15093        108 VGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTN  187 (330)
T ss_pred             HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            22222111000  0 000 00 011223456777777752           11            8899999999999 6


Q ss_pred             CccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          118 KMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       118 ~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +||+.++..+.++++.+.+  |.|||++      |||+..+.++||++
T Consensus       188 ~LD~~~~~~i~~lL~~l~~~~g~tii~i------tHdl~~v~~~~dri  229 (330)
T PRK15093        188 AMEPTTQAQIFRLLTRLNQNNNTTILLI------SHDLQMLSQWADKI  229 (330)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence            9999999999999998864  8999999      99999999999995

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.96  E-value=1.4e-29  Score=204.39  Aligned_cols=157  Identities=15%  Similarity=0.205  Sum_probs=113.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeecC----Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTLD----DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~~----~~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...     ...++.++|++|++.    +..+..+++
T Consensus        33 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l  112 (268)
T PRK10419         33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII  112 (268)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHH
Confidence            57899999999999999999999999999999999999999876422     123567999999752    112333332


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      .+..................+.++.+++. ..        +            ++.+|+++||||| ++||+.++..+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~  192 (268)
T PRK10419        113 REPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR  192 (268)
T ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence            11110000000111111234455555553 11        1            8899999999999 6999999999999


Q ss_pred             HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+. + |.|+|++      ||+.+++..+||++
T Consensus       193 ~l~~~~~~~~~tiiiv------sH~~~~i~~~~d~i  222 (268)
T PRK10419        193 LLKKLQQQFGTACLFI------THDLRLVERFCQRV  222 (268)
T ss_pred             HHHHHHHHcCcEEEEE------ECCHHHHHHhCCEE
Confidence            998875 4 8999999      99999999999983

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=9.3e-30  Score=206.75  Aligned_cols=155  Identities=14%  Similarity=0.181  Sum_probs=115.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC---CCeEEeceEchhh--ccCCceeeEEEeec---CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN---PSLKVQGFYTGEI--RQGGQRVGFEVVTL---DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~---G~i~~~g~~~~~~--~~~~~~ig~~~q~~---~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++   |+|.++|.++...  ...++++||+||++   ....++.+++.
T Consensus        28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~  107 (282)
T PRK13640         28 FSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVA  107 (282)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHH
Confidence            5789999999999999999999999999999987   8999999987421  22346799999986   22345666654


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +.... .............++++.+++....                    ++.+|+++||||| +|||+.++..+.+++
T Consensus       108 ~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l  186 (282)
T PRK13640        108 FGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLI  186 (282)
T ss_pred             hhHHh-CCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            32111 1111111112234556666664321                    8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+. + |.|||++      ||+++.+. .||++
T Consensus       187 ~~l~~~~g~tvli~------tH~~~~~~-~~d~i  213 (282)
T PRK13640        187 RKLKKKNNLTVISI------THDIDEAN-MADQV  213 (282)
T ss_pred             HHHHHhcCCEEEEE------ecCHHHHH-hCCEE
Confidence            8875 4 8999999      99999884 79984

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1e-29  Score=205.26  Aligned_cols=155  Identities=12%  Similarity=0.159  Sum_probs=111.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC---CcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD---DRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~---~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..  ....++.++|++|++.   ...+..+++.+..
T Consensus        30 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~  109 (269)
T PRK13648         30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGL  109 (269)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhH
Confidence            5789999999999999999999999999999999999999988632  1233567999999752   1222333332211


Q ss_pred             CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .. .............+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       110 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  188 (269)
T PRK13648        110 EN-HAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKV  188 (269)
T ss_pred             Hh-cCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            10 001110111123345555555322        1            8899999999999 699999999999999887


Q ss_pred             h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      . + |.|||++      ||+.+++.. ||++
T Consensus       189 ~~~~~~tiiiv------tH~~~~~~~-~d~i  212 (269)
T PRK13648        189 KSEHNITIISI------THDLSEAME-ADHV  212 (269)
T ss_pred             HHhcCCEEEEE------ecCchHHhc-CCEE
Confidence            5 4 8999999      999998875 8884

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.96  E-value=1e-29  Score=203.99  Aligned_cols=157  Identities=15%  Similarity=0.103  Sum_probs=111.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE-----chhhc--c----CCceeeEEEeecC----Ccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY-----TGEIR--Q----GGQRVGFEVVTLD----DRR   65 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~-----~~~~~--~----~~~~ig~~~q~~~----~~~   65 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+     +....  .    .++.++|++|++.    ...
T Consensus        27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  106 (258)
T PRK11701         27 FDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQV  106 (258)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccc
Confidence            5789999999999999999999999999999999999999987     43211  1    2456999999862    111


Q ss_pred             cccccccCCCCCCCCCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccc
Q 029421           66 APLASINASSPESYRWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFS  123 (193)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~  123 (193)
                      +..+++....................+.++.+++.. .        +            ++.+|+++||||| ++||+.+
T Consensus       107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~  186 (258)
T PRK11701        107 SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV  186 (258)
T ss_pred             cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            222232111000000000001112334555555531 1        1            8899999999999 6999999


Q ss_pred             cchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          124 SSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       124 ~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +..+.++++.+. + |.|||++      ||+.+.+..+||++
T Consensus       187 ~~~l~~~l~~~~~~~~~tii~i------sH~~~~~~~~~d~i  222 (258)
T PRK11701        187 QARLLDLLRGLVRELGLAVVIV------THDLAVARLLAHRL  222 (258)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEE------eCCHHHHHHhcCEE
Confidence            999999988875 4 8999999      99999999999984

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.8e-29  Score=202.70  Aligned_cols=157  Identities=13%  Similarity=0.202  Sum_probs=112.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc--c---CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK--A---SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~---~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++  |   ++|+|.++|+++..    ....++.++|+||++.. ..+..++
T Consensus        33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  112 (259)
T PRK14274         33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDN  112 (259)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHH
Confidence            5789999999999999999999999999987  3   58999999988632    11234679999998621 1255555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       113 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~  192 (259)
T PRK14274        113 VAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTR  192 (259)
T ss_pred             HHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            433211000000000011122334444432            111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|+|++      ||+.+.+.++||++
T Consensus       193 ~l~~~l~~~~~~~tiiiv------tH~~~~~~~~~d~i  224 (259)
T PRK14274        193 KIEELILKLKEKYTIVIV------THNMQQAARVSDQT  224 (259)
T ss_pred             HHHHHHHHHhcCCEEEEE------EcCHHHHHHhCCEE
Confidence            999999988768899999      99999999999984

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.7e-29  Score=203.69  Aligned_cols=157  Identities=13%  Similarity=0.172  Sum_probs=114.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCCc-cccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDDR-RAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~~-~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++..    ....++.++|++|++... .+..++
T Consensus        40 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  119 (267)
T PRK14235         40 LDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYEN  119 (267)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHH
Confidence            57899999999999999999999999999975     89999999988642    122356799999986311 255555


Q ss_pred             ccCCCCCCCCC-Ccccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCcccccc
Q 029421           71 INASSPESYRW-PTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        71 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      +.+........ ..........+.++.+++..            ++            ++.+|++|||||| ++||+.++
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  199 (267)
T PRK14235        120 VAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT  199 (267)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHH
Confidence            43321100000 01111112234455555421            11            8899999999999 69999999


Q ss_pred             chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+.++++.+.++.|||++      ||+++.+..+||++
T Consensus       200 ~~l~~~L~~l~~~~tiiiv------tH~~~~~~~~~d~v  232 (267)
T PRK14235        200 AKVEELIDELRQNYTIVIV------THSMQQAARVSQRT  232 (267)
T ss_pred             HHHHHHHHHHhcCCeEEEE------EcCHHHHHhhCCEE
Confidence            9999999988668899999      99999999999984

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2e-29  Score=203.56  Aligned_cols=155  Identities=14%  Similarity=0.204  Sum_probs=112.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++     |++|+|.++|.++..    ....++.++|+||++.. ..++.++
T Consensus        34 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en  113 (269)
T PRK14259         34 CDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYEN  113 (269)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHH
Confidence            6789999999999999999999999999987     689999999987631    12234579999998621 1355555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..... .... .......+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       114 l~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~  191 (269)
T PRK14259        114 IAFGARIN-GYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL  191 (269)
T ss_pred             Hhhhhhhc-CCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence            54322110 0000 0011122233333321            121            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+++++..+||++
T Consensus       192 ~l~~~l~~~~~~~tiiiv------tH~~~~~~~~~d~i  223 (269)
T PRK14259        192 KIEETMHELKKNFTIVIV------THNMQQAVRVSDMT  223 (269)
T ss_pred             HHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence            999999988668899999      99999999999984

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.1e-29  Score=188.89  Aligned_cols=152  Identities=18%  Similarity=0.236  Sum_probs=120.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      ++|.+||.++++||||||||||+++++|+.+|+.|+|.++|..+...   ...-|.+||+.  .+.++..+|..+.... 
T Consensus        26 L~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP---gaergvVFQ~~~LlPWl~~~dNvafgL~l-  101 (259)
T COG4525          26 LTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP---GAERGVVFQNEALLPWLNVIDNVAFGLQL-  101 (259)
T ss_pred             eeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC---CccceeEeccCccchhhHHHHHHHHHHHh-
Confidence            47899999999999999999999999999999999999999987432   22347889986  5666777776665431 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH-HhC
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI-LES  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~-l~~  136 (193)
                      ....+..+...+.+.+..+|+.+..                    |+.+|++|+|||| +.||...++.++.++-. ++.
T Consensus       102 ~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~  181 (259)
T COG4525         102 RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE  181 (259)
T ss_pred             cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence            2223333334455666666665432                    8899999999999 89999999988877765 566


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                       |+.++++      |||++++.-++++
T Consensus       182 tgk~~lli------TH~ieEAlflatr  202 (259)
T COG4525         182 TGKQVLLI------THDIEEALFLATR  202 (259)
T ss_pred             hCCeEEEE------eccHHHHHhhhhe
Confidence             9999999      9999999999988

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=1.3e-29  Score=196.23  Aligned_cols=149  Identities=13%  Similarity=0.055  Sum_probs=110.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.  +..++.+++.+....
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~  101 (200)
T PRK13540         22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF  101 (200)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999999876321 223467999998752  334556654432110


Q ss_pred             CCCCCcccceeeehhhhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                          .. . .....+.++.+++..        ++            ++.+|+++|+||| ++||+.++..+.++++.+++
T Consensus       102 ----~~-~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~  175 (200)
T PRK13540        102 ----SP-G-AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA  175 (200)
T ss_pred             ----Cc-c-hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence                00 0 112234444444432        11            8899999999999 69999999999999998765


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                       |.|||++      ||+...+.. ||.
T Consensus       176 ~~~tiii~------sh~~~~~~~-~d~  195 (200)
T PRK13540        176 KGGAVLLT------SHQDLPLNK-ADY  195 (200)
T ss_pred             cCCEEEEE------eCCchhccc-cch
Confidence             8999999      999776643 665

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.96  E-value=1.5e-29  Score=201.99  Aligned_cols=154  Identities=19%  Similarity=0.222  Sum_probs=112.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeec--CCcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTL--DDRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~   76 (193)
                      |++++|++++|+||||||||||+++|+|++++ +|+|.++|+++...  ...++.++|+||++  ....+..+++.+...
T Consensus        17 l~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~   95 (248)
T PRK03695         17 AEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQP   95 (248)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCc
Confidence            57899999999999999999999999999865 89999999886421  12234689999975  223455555443211


Q ss_pred             CCCCCCcccceeeehhhhhhhccccc--------c------------cCC-------CCCEEEEecC-CCccccccchHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGA-------DTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~-------~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      .  ............+.++.+++...        +            ++.       +|+++||||| ++||+.++..+.
T Consensus        96 ~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~  173 (248)
T PRK03695         96 D--KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD  173 (248)
T ss_pred             c--CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH
Confidence            1  01111111223455555555432        1            554       6799999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+++ |.|||++      ||+++++.++||++
T Consensus       174 ~~L~~~~~~~~tvi~~------sH~~~~~~~~~d~i  203 (248)
T PRK03695        174 RLLSELCQQGIAVVMS------SHDLNHTLRHADRV  203 (248)
T ss_pred             HHHHHHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence            99998865 8999999      99999999999984

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.7e-29  Score=201.83  Aligned_cols=157  Identities=13%  Similarity=0.191  Sum_probs=112.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..    ....++.++|++|++.. ..+..++
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~n  103 (250)
T PRK14240         24 LDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDN  103 (250)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHH
Confidence            57899999999999999999999999999763     68999999988642    12235679999998621 1455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++            ..++            ++.+|+++||||| ++||+.++.
T Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~  183 (250)
T PRK14240        104 VAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTL  183 (250)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            43321100000000011112223333332            1122            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+++.+.++||++
T Consensus       184 ~l~~~l~~~~~~~tiii~------sH~~~~~~~~~d~v  215 (250)
T PRK14240        184 KIEELIQELKKDYTIVIV------THNMQQASRISDKT  215 (250)
T ss_pred             HHHHHHHHHhcCCeEEEE------EeCHHHHHhhCCEE
Confidence            999999988668899999      99999999999984

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.3e-29  Score=219.10  Aligned_cols=157  Identities=13%  Similarity=0.074  Sum_probs=118.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...   ...++.+||++|++  .+..++.+++.+..
T Consensus        25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~  104 (501)
T PRK11288         25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQ  104 (501)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcc
Confidence            57899999999999999999999999999999999999999886321   12346799999986  23345666654432


Q ss_pred             CC-CCC-CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           76 PE-SYR-WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        76 ~~-~~~-~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .. ... ...........+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  184 (501)
T PRK11288        105 LPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIR  184 (501)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            10 001 0111111234456666766432        1            7899999999999 6999999999999999


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++ |.|||++      |||++++..+||++
T Consensus       185 ~~~~~g~tiiii------tHd~~~~~~~~d~i  210 (501)
T PRK11288        185 ELRAEGRVILYV------SHRMEEIFALCDAI  210 (501)
T ss_pred             HHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence            8866 9999999      99999999999984

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.96  E-value=2.1e-29  Score=199.22  Aligned_cols=155  Identities=15%  Similarity=0.224  Sum_probs=110.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++. ...++.+++.+....
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~  102 (234)
T cd03251          23 LDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG  102 (234)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCC
Confidence            57899999999999999999999999999999999999999876422  123467999999762 123555554432211


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . ......   ......+.++.+  ++.        .++            ++.+|+++||||| ++||+.++..+.+++
T Consensus       103 ~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l  181 (234)
T cd03251         103 A-TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL  181 (234)
T ss_pred             C-CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            0 000000   000111222222  111        122            8899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+.++.|||++      ||+++++.. ||++
T Consensus       182 ~~~~~~~tii~~------sh~~~~~~~-~d~v  206 (234)
T cd03251         182 ERLMKNRTTFVI------AHRLSTIEN-ADRI  206 (234)
T ss_pred             HHhcCCCEEEEE------ecCHHHHhh-CCEE
Confidence            988678999999      999998865 8883

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.1e-29  Score=200.85  Aligned_cols=156  Identities=15%  Similarity=0.183  Sum_probs=114.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK---ASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~---~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~   74 (193)
                      |++++|++++|+||||||||||+++|+|+++   |++|+|.++|+++...  ...++.++|+||++.. ..+..+++.+.
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~  102 (246)
T PRK14269         23 MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA  102 (246)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhH
Confidence            5789999999999999999999999999974   6899999999986422  2335679999998621 23555554332


Q ss_pred             CCCCCCC--Ccccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccchH
Q 029421           75 SPESYRW--PTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSSFF  127 (193)
Q Consensus        75 ~~~~~~~--~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~~~  127 (193)
                      ... ...  ..........+.++.+++.            .++            ++.+|+++||||| ++||+.++..+
T Consensus       103 ~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l  181 (246)
T PRK14269        103 PKL-HGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI  181 (246)
T ss_pred             Hhh-cCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            110 010  0011111223455555552            111            8899999999999 69999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          128 PAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++..+.+|+|||++      ||+.+++.++||++
T Consensus       182 ~~~l~~~~~~~tiii~------tH~~~~~~~~~d~i  211 (246)
T PRK14269        182 EELLKELSHNLSMIMV------THNMQQGKRVADYT  211 (246)
T ss_pred             HHHHHHHhCCCEEEEE------ecCHHHHHhhCcEE
Confidence            9999887668999999      99999999999984

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.7e-29  Score=201.78  Aligned_cols=157  Identities=13%  Similarity=0.186  Sum_probs=112.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh---ccc--CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES---LKA--SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl---~~~--~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+   ++|  ++|+|.++|.++...    ...++.++|+||++.. ..+..++
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~n  103 (250)
T PRK14245         24 MEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFEN  103 (250)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHH
Confidence            57899999999999999999999999997   455  589999999886421    2234679999998621 1344555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++..            ++            ++.+|+++||||| ++||+.++.
T Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~  183 (250)
T PRK14245        104 VAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTA  183 (250)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            4322110000000001112234455555421            11            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      |||++.+.++||++
T Consensus       184 ~l~~~l~~~~~~~tiiiv------tH~~~~~~~~~d~v  215 (250)
T PRK14245        184 KVEELIHELKKDYTIVIV------THNMQQAARVSDKT  215 (250)
T ss_pred             HHHHHHHHHhcCCeEEEE------eCCHHHHHhhCCEE
Confidence            999999988668999999      99999999999983

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=1.4e-29  Score=197.07  Aligned_cols=146  Identities=17%  Similarity=0.204  Sum_probs=108.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+..... .++.++|++|+..  +..+..+++.+... .
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~~-~  100 (207)
T PRK13539         23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD-VAEACHYLGHRNAMKPALTVAENLEFWAA-F  100 (207)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchh-hHhhcEEecCCCcCCCCCcHHHHHHHHHH-h
Confidence            578999999999999999999999999999999999999998753211 4557899987642  23455555432111 0


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                      ...    ......+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++ 
T Consensus       101 ~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  176 (207)
T PRK13539        101 LGG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ  176 (207)
T ss_pred             cCC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence            000    01123445555555321        1            7899999999999 69999999999999988755 


Q ss_pred             CCcEEEEecCCCCCCChhHHHH
Q 029421          137 NIPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~  158 (193)
                      |.|||++      ||+.+++..
T Consensus       177 ~~tiii~------sH~~~~~~~  192 (207)
T PRK13539        177 GGIVIAA------THIPLGLPG  192 (207)
T ss_pred             CCEEEEE------eCCchhhcc
Confidence            9999999      999888765

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.96  E-value=1.2e-29  Score=202.86  Aligned_cols=157  Identities=16%  Similarity=0.114  Sum_probs=111.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE-----chhhc------cCCceeeEEEeecCC----cc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY-----TGEIR------QGGQRVGFEVVTLDD----RR   65 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~-----~~~~~------~~~~~ig~~~q~~~~----~~   65 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+     +....      ..++.++|++|++..    ..
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~  103 (253)
T TIGR02323        24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRV  103 (253)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccc
Confidence            6789999999999999999999999999999999999999876     42211      123568999997521    11


Q ss_pred             cccccccCCCCCCCCCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccc
Q 029421           66 APLASINASSPESYRWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFS  123 (193)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~  123 (193)
                      +..+++....................++++.+++.. .        +            ++.+|+++||||| ++||+.+
T Consensus       104 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~  183 (253)
T TIGR02323       104 SAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV  183 (253)
T ss_pred             cHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence            222232110000000000011122345566666531 1        1            8899999999999 6999999


Q ss_pred             cchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          124 SSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       124 ~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +..+.++++.+. + |.|||++      ||+.+.+..+||++
T Consensus       184 ~~~l~~~l~~~~~~~~~tii~v------sH~~~~~~~~~d~~  219 (253)
T TIGR02323       184 QARLLDLLRGLVRDLGLAVIIV------THDLGVARLLAQRL  219 (253)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCEE
Confidence            999999998764 4 8999999      99999999999983

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.1e-29  Score=201.26  Aligned_cols=157  Identities=15%  Similarity=0.161  Sum_probs=112.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecC-Cccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD-DRRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~-~~~~~~~~   70 (193)
                      |++++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++..    ....++.++|++|++. ...+..++
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~  103 (250)
T PRK14262         24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDN  103 (250)
T ss_pred             EeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHH
Confidence            67899999999999999999999999999874     89999999987632    1223567999999862 12445555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~  183 (250)
T PRK14262        104 VAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ  183 (250)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHH
Confidence            433211000000000011122333333331            111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+++..+.++.|||++      ||+.+.+..+||++
T Consensus       184 ~l~~~l~~~~~~~tili~------sH~~~~~~~~~d~i  215 (250)
T PRK14262        184 RIEKLLEELSENYTIVIV------THNIGQAIRIADYI  215 (250)
T ss_pred             HHHHHHHHHhcCcEEEEE------eCCHHHHHHhCCEE
Confidence            999999988668899999      99999999999984

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.96  E-value=1.6e-28  Score=186.42  Aligned_cols=146  Identities=16%  Similarity=0.252  Sum_probs=107.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      |++++|++++|+||||||||||+|+|+|+++|++|+|.++|.          .++|++|.+.          +    .. 
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----------~i~~~~q~~~----------L----Sg-   74 (177)
T cd03222          20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----------TPVYKPQYID----------L----SG-   74 (177)
T ss_pred             cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----------EEEEEcccCC----------C----CH-
Confidence            578999999999999999999999999999999999999884          3678877432          0    00 


Q ss_pred             CCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-C-CcEEEEecCCCCCCChhHHH
Q 029421           81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-N-IPVLASIPAPKSGRDIPAVA  157 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g-~tvl~~~~~~~~tHd~~~~~  157 (193)
                          +       ..+++.+. ..++.+|+++++||| ++||+.++..+.+++..+++ + .|||++      ||+++.+.
T Consensus        75 ----G-------q~qrv~la-ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiiv------sH~~~~~~  136 (177)
T cd03222          75 ----G-------ELQRVAIA-AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVV------EHDLAVLD  136 (177)
T ss_pred             ----H-------HHHHHHHH-HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEE------ECCHHHHH
Confidence                0       01111211 236789999999999 69999999999999988754 4 899999      99999999


Q ss_pred             HHhcCCC----c-EEEEeCCCChhHHHHHHHHHHHHHh
Q 029421          158 RLRNHPG----A-TIFTLSPGNRDSLKDNIYYQLTDAV  190 (193)
Q Consensus       158 ~~~d~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~  190 (193)
                      .+||++.    . .+..+. +++...++.+...+..++
T Consensus       137 ~~~d~i~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  173 (177)
T cd03222         137 YLSDRIHVFEGEPGVYGIA-SQPKGTREGINRFLRGYL  173 (177)
T ss_pred             HhCCEEEEEcCCCccceec-cCCcchhHHHHHHHHhhc
Confidence            9999831    1 111111 233355666666666554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.5e-29  Score=205.03  Aligned_cols=155  Identities=12%  Similarity=0.157  Sum_probs=114.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec---CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL---DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~   75 (193)
                      |+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|+++..  ....++.+||++|++   ....++.+++.+..
T Consensus        28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~  107 (277)
T PRK13642         28 FSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM  107 (277)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhH
Confidence            5789999999999999999999999999999999999999988642  223356799999985   22345555554321


Q ss_pred             CCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .. .............++++.+++..+        +            ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       108 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l  186 (277)
T PRK13642        108 EN-QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI  186 (277)
T ss_pred             HH-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            10 011111111223345555555322        1            8899999999999 699999999999999887


Q ss_pred             h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      . + |.|||++      ||+++++. .||++
T Consensus       187 ~~~~g~tiil~------sH~~~~~~-~~d~i  210 (277)
T PRK13642        187 KEKYQLTVLSI------THDLDEAA-SSDRI  210 (277)
T ss_pred             HHhcCCEEEEE------eCCHHHHH-hCCEE
Confidence            5 4 8999999      99999986 59884

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.4e-29  Score=201.03  Aligned_cols=157  Identities=13%  Similarity=0.138  Sum_probs=113.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+.+|     ++|+|.++|.++...    ...++.++|+||++.. ..+..++
T Consensus        25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en  104 (251)
T PRK14270         25 LPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDN  104 (251)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHH
Confidence            57899999999999999999999999999875     789999999886421    1235679999998621 2455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~  184 (251)
T PRK14270        105 VAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTL  184 (251)
T ss_pred             HHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            433211000000001111222344444431            111            7889999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+.++.|||++      ||+.+++.++||++
T Consensus       185 ~l~~~L~~~~~~~tiiiv------sH~~~~~~~~~d~v  216 (251)
T PRK14270        185 KIEDLMVELKKEYTIVIV------THNMQQASRVSDYT  216 (251)
T ss_pred             HHHHHHHHHHhCCeEEEE------EcCHHHHHHhcCEE
Confidence            999999888667899999      99999999999984

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.96  E-value=2.6e-29  Score=201.26  Aligned_cols=154  Identities=16%  Similarity=0.222  Sum_probs=112.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc----CCCCeEEeceEchhhccCCceeeEEEeecC----Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA----SNPSLKVQGFYTGEIRQGGQRVGFEVVTLD----DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~----~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~----~~~~~~~~~~   72 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|    ++|+|.++|.++......++.++|++|++.    +..+..++..
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~  103 (254)
T PRK10418         24 LTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHAR  103 (254)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHH
Confidence            57899999999999999999999999999999    999999999887432222457999999852    1112222211


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      .... ......  ......+.++.+++..           ++            ++.+|++|||||| ++||+.++..+.
T Consensus       104 ~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~  180 (254)
T PRK10418        104 ETCL-ALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL  180 (254)
T ss_pred             HHHH-HcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence            1000 000010  1122344555666543           11            8899999999999 699999999999


Q ss_pred             HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+. + |.|||++      ||+.+++..+||++
T Consensus       181 ~~L~~~~~~~g~til~~------sH~~~~~~~~~d~v  211 (254)
T PRK10418        181 DLLESIVQKRALGMLLV------THDMGVVARLADDV  211 (254)
T ss_pred             HHHHHHHHhcCcEEEEE------ecCHHHHHHhCCEE
Confidence            9998874 4 8999999      99999999999984

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.6e-29  Score=201.26  Aligned_cols=155  Identities=10%  Similarity=0.112  Sum_probs=114.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |++++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++..    ....++.++|++|++.. ..+..++
T Consensus        29 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  108 (261)
T PRK14263         29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDN  108 (261)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHH
Confidence            67899999999999999999999999999986     79999999988632    11235679999998632 3455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+...... .. ........+.++.+++.            .++            ++.+|+++||||| +|||+.++.
T Consensus       109 l~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~  186 (261)
T PRK14263        109 VAFGLRLNR-YK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATR  186 (261)
T ss_pred             HHHHHhhcC-ch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence            443211100 00 00011223344444431            122            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|+|++      ||+++++.++||++
T Consensus       187 ~l~~~l~~~~~~~tii~i------sH~~~~i~~~~d~v  218 (261)
T PRK14263        187 RVEELMVELKKDYTIALV------THNMQQAIRVADTT  218 (261)
T ss_pred             HHHHHHHHHhcCCeEEEE------eCCHHHHHHhCCEE
Confidence            999999988668899999      99999999999984

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.6e-29  Score=202.67  Aligned_cols=157  Identities=13%  Similarity=0.179  Sum_probs=111.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++     |++|+|.++|+++...    ...++.++|++|++.. ..+..++
T Consensus        42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  121 (268)
T PRK14248         42 MDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNN  121 (268)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHH
Confidence            5789999999999999999999999999865     6899999999886321    1235679999998621 1244555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++            ..++            ++.+|+++||||| ++||+.++.
T Consensus       122 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~  201 (268)
T PRK14248        122 ITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNA  201 (268)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHH
Confidence            43321100000000000111222333322            1122            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      |||++++.++||++
T Consensus       202 ~l~~~l~~~~~~~tiii~------tH~~~~~~~~~d~v  233 (268)
T PRK14248        202 KIEELITELKEEYSIIIV------THNMQQALRVSDRT  233 (268)
T ss_pred             HHHHHHHHHhcCCEEEEE------EeCHHHHHHhCCEE
Confidence            999999988667899999      99999999999984

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.7e-29  Score=199.96  Aligned_cols=156  Identities=15%  Similarity=0.165  Sum_probs=112.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-----NPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-----~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|+     +|+|.++|.++...    ...++.++|+||++.. ..+..++
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  104 (251)
T PRK14249         25 MDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDN  104 (251)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHH
Confidence            578999999999999999999999999999997     69999999876321    1335679999998631 1255555


Q ss_pred             ccCCCCCCCCCCccc-ceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421           71 INASSPESYRWPTVG-RYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      +.+.... ....... ......+.++.+++.            .++            ++.+|+++||||| ++||+.++
T Consensus       105 l~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~  183 (251)
T PRK14249        105 VAFGPRM-LGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST  183 (251)
T ss_pred             HhhHHHh-cCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            4432110 0000000 001112222333321            121            8899999999999 69999999


Q ss_pred             chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+.++++.++++.|||++      ||+++.+..+||++
T Consensus       184 ~~l~~~l~~~~~~~tiliv------sh~~~~~~~~~d~i  216 (251)
T PRK14249        184 MRIEELMQELKQNYTIAIV------THNMQQAARASDWT  216 (251)
T ss_pred             HHHHHHHHHHhcCCEEEEE------eCCHHHHHhhCCEE
Confidence            9999999988668999999      99999999999984

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.96  E-value=1.8e-29  Score=216.31  Aligned_cols=158  Identities=17%  Similarity=0.186  Sum_probs=121.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc--h--hhccCCceeeEEEeecC----Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT--G--EIRQGGQRVGFEVVTLD----DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~--~--~~~~~~~~ig~~~q~~~----~~~~~~~~~~   72 (193)
                      |++.+||+++|+|+||||||||.|+|+|+++|++|+|.++|.+.  .  ..+..++++-++||+++    +..++.+.+.
T Consensus       312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~  391 (539)
T COG1123         312 FDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILA  391 (539)
T ss_pred             eEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHH
Confidence            67899999999999999999999999999999999999999873  1  12234567888999884    3344444433


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAV  130 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~~l  130 (193)
                      .+..............+..+.++.+++..-         +            |+.+|+++++||| +.||+..+..+.++
T Consensus       392 epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL  471 (539)
T COG1123         392 EPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL  471 (539)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH
Confidence            322211111111222345567777777631         1            8999999999999 79999999999999


Q ss_pred             HHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421          131 LRILES--NIPVLASIPAPKSGRDIPAVARLRNHPG  164 (193)
Q Consensus       131 l~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~  164 (193)
                      ++.+++  |.|+|++      |||+..+..+||++.
T Consensus       472 l~~lq~e~g~t~lfI------SHDl~vV~~i~drv~  501 (539)
T COG1123         472 LKDLQEELGLTYLFI------SHDLAVVRYIADRVA  501 (539)
T ss_pred             HHHHHHHhCCEEEEE------eCCHHHHHhhCceEE
Confidence            999875  9999999      999999999999954

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.6e-29  Score=218.10  Aligned_cols=157  Identities=11%  Similarity=0.131  Sum_probs=117.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEeceEchhh---ccCCceeeEEEeec-----CCcccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL-----DDRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~-----~~~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...   ...+..++|++|++     ....++.+++
T Consensus       283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l  362 (506)
T PRK13549        283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI  362 (506)
T ss_pred             eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence            6899999999999999999999999999998 5999999999876321   12245699999974     2234555554


Q ss_pred             cCCCCC-CCC---CCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421           72 NASSPE-SYR---WPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        72 ~~~~~~-~~~---~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .+.... ...   ...........++++.+++. ..        +            ++.+|++|||||| ++||+.++.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~  442 (506)
T PRK13549        363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKY  442 (506)
T ss_pred             hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHH
Confidence            432110 000   01111112345667777764 22        1            7889999999999 699999999


Q ss_pred             hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+++ |.|||++      |||++++.++||++
T Consensus       443 ~l~~~l~~l~~~g~tvi~~------sHd~~~~~~~~d~v  475 (506)
T PRK13549        443 EIYKLINQLVQQGVAIIVI------SSELPEVLGLSDRV  475 (506)
T ss_pred             HHHHHHHHHHHCCCEEEEE------CCCHHHHHHhCCEE
Confidence            99999998876 9999999      99999999999983

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.2e-29  Score=202.17  Aligned_cols=157  Identities=15%  Similarity=0.183  Sum_probs=113.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |++.+|++++|+||||||||||+++|+|+++     |++|+|.++|.++..    ....++.++|+||++.. ..+..++
T Consensus        41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  120 (267)
T PRK14237         41 MQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYEN  120 (267)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHH
Confidence            5789999999999999999999999999986     589999999988632    12235679999997621 2355555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~  200 (267)
T PRK14237        121 ITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTM  200 (267)
T ss_pred             HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            543211100000000111122334444431            111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+.+++.++||++
T Consensus       201 ~l~~~l~~~~~~~tiii~------tH~~~~~~~~~d~i  232 (267)
T PRK14237        201 QLEETMFELKKNYTIIIV------THNMQQAARASDYT  232 (267)
T ss_pred             HHHHHHHHHhcCCEEEEE------ecCHHHHHHhcCEE
Confidence            999999988668899999      99999999999984

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.96  E-value=2.3e-29  Score=198.13  Aligned_cols=156  Identities=12%  Similarity=0.108  Sum_probs=111.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++. ...+..+++.+....
T Consensus        35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~  114 (226)
T cd03248          35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQS  114 (226)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCC
Confidence            57899999999999999999999999999999999999999876422  223467999999862 123455554432211


Q ss_pred             CCCC--Ccccceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           78 SYRW--PTVGRYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        78 ~~~~--~~~~~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ....  ..........+.++.+  ++..        ++            ++.+|+++||||| ++||+.++..+.++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  194 (226)
T cd03248         115 CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY  194 (226)
T ss_pred             CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            0000  0000001122333444  3332        11            8899999999999 6999999999999999


Q ss_pred             HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++.|+|++      |||.+++. .||++
T Consensus       195 ~~~~~~tii~~------sh~~~~~~-~~d~i  218 (226)
T cd03248         195 DWPERRTVLVI------AHRLSTVE-RADQI  218 (226)
T ss_pred             HHcCCCEEEEE------ECCHHHHH-hCCEE
Confidence            88667899999      99999885 48873

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.9e-29  Score=223.29  Aligned_cols=157  Identities=17%  Similarity=0.175  Sum_probs=117.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec----CCcccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL----DDRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~----~~~~~~~~~~   71 (193)
                      |+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|.++...     +..+++++|+||++    ++..++.+++
T Consensus       345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l  424 (623)
T PRK10261        345 FDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI  424 (623)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence            67899999999999999999999999999999999999999876321     12356799999985    2233444443


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      ....................++++.+++. ..        +            ++.+|++|||||| ++||+.++..+.+
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~  504 (623)
T PRK10261        425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN  504 (623)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            32111000001111112344667777774 22        1            8899999999999 6999999999999


Q ss_pred             HHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.++ + |.|||++      |||++.+..+||++
T Consensus       505 ll~~l~~~~g~tvi~i------sHdl~~v~~~~dri  534 (623)
T PRK10261        505 LLLDLQRDFGIAYLFI------SHDMAVVERISHRV  534 (623)
T ss_pred             HHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            998875 4 8999999      99999999999994

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.96  E-value=1.6e-29  Score=192.78  Aligned_cols=144  Identities=17%  Similarity=0.288  Sum_probs=102.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~   78 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...+..++|++|-       .+...+.  ..
T Consensus        20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~-------l~~~gl~--~~   90 (180)
T cd03214          20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQA-------LELLGLA--HL   90 (180)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHH-------HHHcCCH--hH
Confidence            57899999999999999999999999999999999999999876421  1223457888771       1111110  00


Q ss_pred             CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhH
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~  155 (193)
                      .... ..  ..-.-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+++  |.|+|++      ||+.++
T Consensus        91 ~~~~-~~--~LS~G~~qrl~la-ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~------sh~~~~  160 (180)
T cd03214          91 ADRP-FN--ELSGGERQRVLLA-RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV------LHDLNL  160 (180)
T ss_pred             hcCC-cc--cCCHHHHHHHHHH-HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHH
Confidence            0000 00  0000111222221 236889999999999 69999999999999988754  8999999      999999


Q ss_pred             HHHHhcCC
Q 029421          156 VARLRNHP  163 (193)
Q Consensus       156 ~~~~~d~~  163 (193)
                      +.++||++
T Consensus       161 ~~~~~d~~  168 (180)
T cd03214         161 AARYADRV  168 (180)
T ss_pred             HHHhCCEE
Confidence            98999983

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.9e-29  Score=200.56  Aligned_cols=157  Identities=13%  Similarity=0.109  Sum_probs=112.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++     |++|+|.++|.++..    ....++.++|++|++.. ..++.++
T Consensus        25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en  104 (251)
T PRK14251         25 LDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDN  104 (251)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHH
Confidence            5789999999999999999999999999997     479999999987632    12235679999998621 2355555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       105 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~  184 (251)
T PRK14251        105 VAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS  184 (251)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHH
Confidence            433211000000000011122334444431            111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+++++.++||++
T Consensus       185 ~l~~~l~~~~~~~tiiii------sH~~~~~~~~~d~i  216 (251)
T PRK14251        185 EIEETLMELKHQYTFIMV------THNLQQAGRISDQT  216 (251)
T ss_pred             HHHHHHHHHHcCCeEEEE------ECCHHHHHhhcCEE
Confidence            999999988668899999      99999999999984

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.96  E-value=4.6e-29  Score=195.59  Aligned_cols=149  Identities=17%  Similarity=0.204  Sum_probs=108.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...  ...++.++|++|++.. ..+..+++.+....
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~  104 (220)
T cd03245          25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL  104 (220)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCC
Confidence            57899999999999999999999999999999999999999876321  1224579999998621 23444544332110


Q ss_pred             CCCCCcccceeeehhhhhhhcc-------------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIAL-------------------PELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l-------------------~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .   ..    ....+.++.+++                   ..++            ++.+|+++||||| ++||+.++.
T Consensus       105 ~---~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  177 (220)
T cd03245         105 A---DD----ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE  177 (220)
T ss_pred             C---CH----HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence            0   00    001111111111                   1222            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      |||.+.+ ++||++
T Consensus       178 ~l~~~l~~~~~~~tii~~------sH~~~~~-~~~d~v  208 (220)
T cd03245         178 RLKERLRQLLGDKTLIII------THRPSLL-DLVDRI  208 (220)
T ss_pred             HHHHHHHHhcCCCEEEEE------eCCHHHH-HhCCEE
Confidence            999999988666899999      9999876 689883

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.96  E-value=5.7e-29  Score=189.33  Aligned_cols=141  Identities=11%  Similarity=0.148  Sum_probs=104.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecCC-cccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLDD-RRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|++.. ..+..+++    .  
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i----~--   96 (178)
T cd03247          23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL----G--   96 (178)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh----c--
Confidence            57899999999999999999999999999999999999999876432 2234678999997521 12222221    0  


Q ss_pred             CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHH
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVA  157 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~  157 (193)
                      ...        -.-..+++.+. .+++.+|+++||||| ++||+.++..+.++++.+.++.|||++      ||+.+++.
T Consensus        97 ~~L--------S~G~~qrv~la-ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~------sh~~~~~~  161 (178)
T cd03247          97 RRF--------SGGERQRLALA-RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI------THHLTGIE  161 (178)
T ss_pred             ccC--------CHHHHHHHHHH-HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE------ecCHHHHH
Confidence            000        00111222221 236899999999999 699999999999999888668999999      99998875


Q ss_pred             HHhcCC
Q 029421          158 RLRNHP  163 (193)
Q Consensus       158 ~~~d~~  163 (193)
                       .||++
T Consensus       162 -~~d~~  166 (178)
T cd03247         162 -HMDKI  166 (178)
T ss_pred             -hCCEE
Confidence             58773

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.9e-29  Score=200.57  Aligned_cols=157  Identities=13%  Similarity=0.122  Sum_probs=111.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--cc---CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KA---SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~---~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+.  +|   ++|+|.++|.++..    ....++.++|+||++.. ..+..++
T Consensus        26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  105 (252)
T PRK14239         26 LDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYEN  105 (252)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHH
Confidence            578999999999999999999999999985  36   48999999987632    11234679999998621 2455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  185 (252)
T PRK14239        106 VVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAG  185 (252)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence            433211000000000011122233333321            111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+.++.|||++      |||++++.++||++
T Consensus       186 ~l~~~l~~~~~~~tii~~------sH~~~~~~~~~d~i  217 (252)
T PRK14239        186 KIEETLLGLKDDYTMLLV------TRSMQQASRISDRT  217 (252)
T ss_pred             HHHHHHHHHhhCCeEEEE------ECCHHHHHHhCCEE
Confidence            999999988667899999      99999999999984

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.96  E-value=3.7e-29  Score=192.88  Aligned_cols=146  Identities=14%  Similarity=0.150  Sum_probs=108.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |++++|++++|+||||||||||+++|+|++  +|++|+|.++|+++... ..++.++|++|++.  +..+..+++.+...
T Consensus        30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~-~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~  108 (194)
T cd03213          30 GKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR-SFRKIIGYVPQDDILHPTLTVRETLMFAAK  108 (194)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH-hhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence            578999999999999999999999999999  99999999999987532 34567999999752  22344444322100


Q ss_pred             CCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChh
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIP  154 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~  154 (193)
                      .    .     ..-.-..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+.+ |.|+|++      ||+.+
T Consensus       109 ~----~-----~LS~G~~qrv~la-ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~------sh~~~  172 (194)
T cd03213         109 L----R-----GLSGGERKRVSIA-LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS------IHQPS  172 (194)
T ss_pred             h----c-----cCCHHHHHHHHHH-HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE------ecCch
Confidence            0    0     0000011122221 127889999999999 69999999999999998875 9999999      99986


Q ss_pred             -HHHHHhcCC
Q 029421          155 -AVARLRNHP  163 (193)
Q Consensus       155 -~~~~~~d~~  163 (193)
                       ++..+||++
T Consensus       173 ~~~~~~~d~v  182 (194)
T cd03213         173 SEIFELFDKL  182 (194)
T ss_pred             HHHHHhcCEE
Confidence             688899984

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3e-29  Score=202.70  Aligned_cols=157  Identities=12%  Similarity=0.176  Sum_probs=111.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+|+||||||||+++|+|+++     |++|+|.++|.++..    ....++.++|+||++.. ..+..++
T Consensus        45 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  124 (271)
T PRK14238         45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDN  124 (271)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHH
Confidence            5789999999999999999999999999997     699999999987632    12335679999998621 1355555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhc------------ccccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIA------------LPELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------l~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.++            ...++            ++.+|+++||||| ++||+.++.
T Consensus       125 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~  204 (271)
T PRK14238        125 VTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL  204 (271)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence            4321110000000000011112222221            11122            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+.++.|||++      |||++++.++||++
T Consensus       205 ~l~~~l~~~~~~~tiiiv------sH~~~~i~~~~d~i  236 (271)
T PRK14238        205 KVEELVQELKKDYSIIIV------THNMQQAARISDKT  236 (271)
T ss_pred             HHHHHHHHHHcCCEEEEE------EcCHHHHHHhCCEE
Confidence            999999988768999999      99999999999984

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.96  E-value=4.2e-29  Score=217.41  Aligned_cols=157  Identities=13%  Similarity=0.142  Sum_probs=116.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |++++|++++|+||||||||||+++|+|+++|  ++|+|.++|.++....   ..++.+||+||++  .+..++.+++.+
T Consensus        22 l~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~  101 (500)
T TIGR02633        22 LEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFL  101 (500)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHh
Confidence            57899999999999999999999999999987  7999999998864211   1235699999986  233455565443


Q ss_pred             CCCCCC---CCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           74 SSPESY---RWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        74 ~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ......   ............+.++.+++...         +            ++.+|+++||||| ++||+.++..+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~  181 (500)
T TIGR02633       102 GNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL  181 (500)
T ss_pred             hccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence            221100   00111111223455666665421         1            7889999999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+++ |.|||++      |||++++..+||++
T Consensus       182 ~~l~~l~~~g~tviii------tHd~~~~~~~~d~i  211 (500)
T TIGR02633       182 DIIRDLKAHGVACVYI------SHKLNEVKAVCDTI  211 (500)
T ss_pred             HHHHHHHhCCCEEEEE------eCcHHHHHHhCCEE
Confidence            99998876 9999999      99999999999983

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.96  E-value=3.6e-29  Score=197.12  Aligned_cols=153  Identities=18%  Similarity=0.223  Sum_probs=112.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...+..++|++|++. ...+..+++.+... 
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~-  106 (225)
T PRK10247         28 FSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQ-  106 (225)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHh-
Confidence            67899999999999999999999999999999999999999876322  123467899999862 12355555433111 


Q ss_pred             CCCCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      ...  .........+.++.+++.. .        +            ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus       107 ~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  184 (225)
T PRK10247        107 IRN--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV  184 (225)
T ss_pred             hcC--CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            000  0001122335566666631 1        1            8899999999999 6999999999999998874


Q ss_pred             -C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 -S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       + |.|||++      ||+.+.+. .||++
T Consensus       185 ~~~~~tvii~------sh~~~~~~-~~d~i  207 (225)
T PRK10247        185 REQNIAVLWV------THDKDEIN-HADKV  207 (225)
T ss_pred             HhcCCEEEEE------ECChHHHH-hCCEE
Confidence             4 8999999      99998885 68873

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.5e-29  Score=217.88  Aligned_cols=157  Identities=10%  Similarity=0.106  Sum_probs=116.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEchh---hccCCceeeEEEeec-----CCcccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGE---IRQGGQRVGFEVVTL-----DDRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~-----~~~~~~~~~~   71 (193)
                      |+|.+|++++|+||||||||||+|+|+|+++| ++|+|.++|+++..   ....++++||++|++     .+..++.+++
T Consensus       281 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~  360 (500)
T TIGR02633       281 FSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI  360 (500)
T ss_pred             eEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence            67899999999999999999999999999985 89999999987632   122345799999984     2223444544


Q ss_pred             cCCCCC-CCC---CCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421           72 NASSPE-SYR---WPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        72 ~~~~~~-~~~---~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .+.... ...   ...........++++.+++.. .        +            ++.+|++|||||| ++||+.++.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~  440 (500)
T TIGR02633       361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKY  440 (500)
T ss_pred             cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHH
Confidence            332110 000   011111123445667777642 1        1            7889999999999 699999999


Q ss_pred             hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+++ |.|||++      |||++++.++||++
T Consensus       441 ~l~~~l~~l~~~g~tviiv------sHd~~~~~~~~d~v  473 (500)
T TIGR02633       441 EIYKLINQLAQEGVAIIVV------SSELAEVLGLSDRV  473 (500)
T ss_pred             HHHHHHHHHHhCCCEEEEE------CCCHHHHHHhCCEE
Confidence            99999998876 9999999      99999999999983

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.96  E-value=5.3e-29  Score=216.81  Aligned_cols=157  Identities=9%  Similarity=0.140  Sum_probs=117.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecC-----Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLD-----DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~-----~~~~~~~~~~   72 (193)
                      |+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|+++...   ...++++||++|++.     ...++.+++.
T Consensus       273 l~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~  352 (501)
T PRK10762        273 FTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS  352 (501)
T ss_pred             EEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence            57899999999999999999999999999999999999999876321   122456999999851     2345555543


Q ss_pred             CCCCCCC-C----CCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccc
Q 029421           73 ASSPESY-R----WPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        73 ~~~~~~~-~----~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +...... .    ...........++++.+++. ...                    ++.+|+++||||| ++||+.++.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~  432 (501)
T PRK10762        353 LTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKK  432 (501)
T ss_pred             hhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHH
Confidence            3211000 0    00011112344566777773 221                    7889999999999 699999999


Q ss_pred             hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+++ |.|||++      |||++++.++||++
T Consensus       433 ~l~~~l~~~~~~g~tviiv------tHd~~~~~~~~d~v  465 (501)
T PRK10762        433 EIYQLINQFKAEGLSIILV------SSEMPEVLGMSDRI  465 (501)
T ss_pred             HHHHHHHHHHHCCCEEEEE------cCCHHHHHhhCCEE
Confidence            99999999875 9999999      99999999999983

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.96  E-value=3.3e-29  Score=198.56  Aligned_cols=155  Identities=14%  Similarity=0.126  Sum_probs=109.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|+||++. ...++.+++.+....
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~  102 (237)
T cd03252          23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG  102 (237)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCC
Confidence            57899999999999999999999999999999999999999876422  123467999999862 123455554332110


Q ss_pred             CCCCCccc---ceeeehhhhhhh--cc--------cccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--AL--------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l--------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . ......   ......+.++.+  ++        ..++            ++.+|+++||||| ++||+.++..+.+++
T Consensus       103 ~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  181 (237)
T cd03252         103 M-SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM  181 (237)
T ss_pred             C-CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            0 000000   000111222222  11        1222            7899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+.+|.|||++      |||++++. .||++
T Consensus       182 ~~~~~~~tiii~------sH~~~~~~-~~d~v  206 (237)
T cd03252         182 HDICAGRTVIII------AHRLSTVK-NADRI  206 (237)
T ss_pred             HHhcCCCEEEEE------eCCHHHHH-hCCEE
Confidence            988668999999      99999885 58883

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.4e-29  Score=199.54  Aligned_cols=156  Identities=15%  Similarity=0.204  Sum_probs=111.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCeEEeceEchh----hccCCceeeEEEeecC--Ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-----NPSLKVQGFYTGE----IRQGGQRVGFEVVTLD--DRRAPLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-----~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~--~~~~~~~   69 (193)
                      |+|++|++++|+||||||||||+++|+|+++|+     +|+|.++|.++..    ....+..++|++|++.  ...+..+
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e  104 (252)
T PRK14272         25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD  104 (252)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHH
Confidence            578999999999999999999999999999874     8999999988642    1133567999999862  2235555


Q ss_pred             cccCCCCCCCCCCccc-ceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccc
Q 029421           70 SINASSPESYRWPTVG-RYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFS  123 (193)
Q Consensus        70 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~  123 (193)
                      ++.+.... ....... ......+.++.+++            ..++            ++.+|+++||||| ++||+.+
T Consensus       105 nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  183 (252)
T PRK14272        105 NVVAGLKL-AGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAS  183 (252)
T ss_pred             HHHHHHHh-cCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence            54321110 0000000 00111111111211            1122            8899999999999 6999999


Q ss_pred             cchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          124 SSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       124 ~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +..+.++++.++++.|||++      ||+.+.+..+||++
T Consensus       184 ~~~l~~~l~~~~~~~tiii~------sH~~~~~~~~~d~i  217 (252)
T PRK14272        184 TARIEDLMTDLKKVTTIIIV------THNMHQAARVSDTT  217 (252)
T ss_pred             HHHHHHHHHHHhcCCeEEEE------eCCHHHHHHhCCEE
Confidence            99999999988668999999      99999999999984

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.6e-29  Score=199.13  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=111.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh---hccCCceeeEEEeecCC-cccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE---IRQGGQRVGFEVVTLDD-RRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~~~-~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++..   ....++.++|++|++.. ..+..+++
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l  103 (249)
T PRK14253         24 LPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENV  103 (249)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHH
Confidence            57899999999999999999999999999986     58999999987631   22335679999998621 13445554


Q ss_pred             cCCCCCCCCCCcc-cceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           72 NASSPESYRWPTV-GRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        72 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .+..... ..... .......+.++.+++            ..++            ++.+|+++||||| ++||+.++.
T Consensus       104 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~  182 (249)
T PRK14253        104 AYGLRAQ-GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH  182 (249)
T ss_pred             HhHHHhc-CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence            3321100 00000 000111222232222            1121            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+.+++..+||++
T Consensus       183 ~l~~~l~~~~~~~tii~~------sh~~~~~~~~~d~i  214 (249)
T PRK14253        183 KIEELMEELKKNYTIVIV------THSMQQARRISDRT  214 (249)
T ss_pred             HHHHHHHHHhcCCeEEEE------ecCHHHHHHhCCEE
Confidence            999999998767899999      99999999999984

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.9e-29  Score=217.65  Aligned_cols=157  Identities=13%  Similarity=0.107  Sum_probs=117.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---hccCCceeeEEEeec-----CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---IRQGGQRVGFEVVTL-----DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~-----~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..   ....++.++|++|++     .+..+..+++.
T Consensus       274 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~  353 (501)
T PRK11288        274 FSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNIN  353 (501)
T ss_pred             EEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhc
Confidence            5789999999999999999999999999999999999999987632   112245789999974     22345555543


Q ss_pred             CCCCCCC---C-C-Ccccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421           73 ASSPESY---R-W-PTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        73 ~~~~~~~---~-~-~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +......   . + ..........+.++.+++. +.        +            ++.+|++|||||| +|||+.++.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~  433 (501)
T PRK11288        354 ISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKH  433 (501)
T ss_pred             cccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHH
Confidence            3211100   0 0 1111112344567777763 22        1            7889999999999 699999999


Q ss_pred             hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+++ |.|||++      |||++++.++||++
T Consensus       434 ~l~~~l~~l~~~g~tviiv------sHd~~~~~~~~d~i  466 (501)
T PRK11288        434 EIYNVIYELAAQGVAVLFV------SSDLPEVLGVADRI  466 (501)
T ss_pred             HHHHHHHHHHhCCCEEEEE------CCCHHHHHhhCCEE
Confidence            99999998876 9999999      99999999999993

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.95  E-value=4.4e-29  Score=201.79  Aligned_cols=157  Identities=15%  Similarity=0.121  Sum_probs=114.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC--------CCCeEEeceEchhh--ccCCceeeEEEeecC--Cccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS--------NPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPL   68 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~--------~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~   68 (193)
                      |+|++|++++|+||||||||||+++|+|+++|+        +|+|.++|.++...  ...++.++|++|++.  ...+..
T Consensus        22 l~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~  101 (272)
T PRK13547         22 LRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAR  101 (272)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHH
Confidence            578999999999999999999999999999998        89999999876421  222345899999752  234555


Q ss_pred             ccccCCCCCCC---CCCcccceeeehhhhhhhccccc--------c------------cC---------CCCCEEEEecC
Q 029421           69 ASINASSPESY---RWPTVGRYKVDVASFEAIALPEL--------Q------------VG---------ADTDLFVIDEV  116 (193)
Q Consensus        69 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~---------~~p~llllDEp  116 (193)
                      +++.+......   ............+.++.+++...        +            ++         .+|+++|||||
T Consensus       102 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEP  181 (272)
T PRK13547        102 EIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP  181 (272)
T ss_pred             HHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCc
Confidence            55443211100   00000111223345555655432        1            55         59999999999


Q ss_pred             -CCccccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          117 -GKMELFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       117 -~~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       ++||+.++..+.++++.+. + |.|||++      |||++.+.++||++
T Consensus       182 t~~LD~~~~~~l~~~l~~~~~~~~~tviii------sH~~~~~~~~~d~i  225 (272)
T PRK13547        182 TAALDLAHQHRLLDTVRRLARDWNLGVLAI------VHDPNLAARHADRI  225 (272)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence             6999999999999998875 4 8999999      99999999999984

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.95  E-value=2.8e-29  Score=241.60  Aligned_cols=156  Identities=17%  Similarity=0.147  Sum_probs=119.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-hhccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-EIRQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .....++.+||+||+.  .+..++.+++.+... 
T Consensus      1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~- 2038 (2272)
T TIGR01257      1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR- 2038 (2272)
T ss_pred             EEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH-
Confidence            578999999999999999999999999999999999999999873 2223456799999975  334566665433111 


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ....+.........+.++.+++.+..                    ++.+|++++|||| +|||+.++..++++++.+++
T Consensus      2039 l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~ 2118 (2272)
T TIGR01257      2039 LRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118 (2272)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence            01111111112233556666664321                    7899999999999 69999999999999998865


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |+|||++      ||++++++++||++
T Consensus      2119 ~g~TIILt------TH~mee~e~lcDrV 2140 (2272)
T TIGR01257      2119 EGRAVVLT------SHSMEECEALCTRL 2140 (2272)
T ss_pred             CCCEEEEE------eCCHHHHHHhCCEE
Confidence             9999999      99999999999984

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.7e-29  Score=200.93  Aligned_cols=157  Identities=13%  Similarity=0.195  Sum_probs=112.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+|+||||||||+++|+|+++|     ++|+|.++|+++...    ...+..++|++|++.. ..+..++
T Consensus        28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en  107 (259)
T PRK14260         28 MDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYEN  107 (259)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHH
Confidence            57899999999999999999999999999985     489999999876321    2234579999998621 2455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~  187 (259)
T PRK14260        108 VAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATM  187 (259)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence            432211000001001111122333433331            111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+++++..+||++
T Consensus       188 ~l~~~l~~~~~~~tiii~------tH~~~~i~~~~d~i  219 (259)
T PRK14260        188 KVEELIHSLRSELTIAIV------THNMQQATRVSDFT  219 (259)
T ss_pred             HHHHHHHHHhcCCEEEEE------eCCHHHHHHhcCeE
Confidence            999999988667899999      99999999999983

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.95  E-value=6.1e-29  Score=211.75  Aligned_cols=157  Identities=12%  Similarity=0.167  Sum_probs=124.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch---hhccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG---EIRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~---~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |++.+||+++|+|.||||||||+|+|+|.++|++|+|.++|+...   ........|+.++|++  .+.+++.+|+.+..
T Consensus        29 l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgr  108 (500)
T COG1129          29 LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGR  108 (500)
T ss_pred             eEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccc
Confidence            678999999999999999999999999999999999999999863   2223346688999987  57788888876654


Q ss_pred             CCCCC---CCcccceeeehhhhhhhccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           76 PESYR---WPTVGRYKVDVASFEAIALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        76 ~~~~~---~~~~~~~~~~~~~l~~~~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .....   ...........+.+.++++.        +++            +..+++++||||| ++|+......+.+++
T Consensus       109 e~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~i  188 (500)
T COG1129         109 EPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI  188 (500)
T ss_pred             ccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            32221   11122233445566666552        111            7789999999999 599999999999999


Q ss_pred             HHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+++ |.+||++      ||.++++.++||++
T Consensus       189 r~Lk~~Gv~ii~I------SHrl~Ei~~i~Dri  215 (500)
T COG1129         189 RRLKAQGVAIIYI------SHRLDEVFEIADRI  215 (500)
T ss_pred             HHHHhCCCEEEEE------cCcHHHHHHhcCEE
Confidence            99987 9999999      99999999999994

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.3e-29  Score=199.61  Aligned_cols=157  Identities=11%  Similarity=0.176  Sum_probs=113.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|.+|++++|+||||||||||+++|+|+.+     |++|+|.++|+++...    ...++.++|+||++.. ..+..++
T Consensus        26 ~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~n  105 (251)
T PRK14244         26 LDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDN  105 (251)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHH
Confidence            5789999999999999999999999999986     4799999999876422    1235679999998621 1244555


Q ss_pred             ccCCCCCCCCC-Ccccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCcccccc
Q 029421           71 INASSPESYRW-PTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        71 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      +.+........ ..........+.++.+++..            ++            ++.+|+++||||| ++||+.++
T Consensus       106 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~  185 (251)
T PRK14244        106 VAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVAT  185 (251)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            43221000000 00011112234455555532            11            7899999999999 69999999


Q ss_pred             chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+.++++.+++|.|||++      ||+++++.++||++
T Consensus       186 ~~l~~~l~~~~~~~tiiii------sH~~~~~~~~~d~i  218 (251)
T PRK14244        186 NVIENLIQELKKNFTIIVV------THSMKQAKKVSDRV  218 (251)
T ss_pred             HHHHHHHHHHhcCCeEEEE------eCCHHHHHhhcCEE
Confidence            9999999888668999999      99999999999984

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.95  E-value=3.9e-29  Score=198.28  Aligned_cols=155  Identities=12%  Similarity=0.153  Sum_probs=109.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++. ...+..+++.+....
T Consensus        24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~  103 (238)
T cd03249          24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPD  103 (238)
T ss_pred             EEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCC
Confidence            57899999999999999999999999999999999999999876422  122456999999762 123445554332111


Q ss_pred             CCCCCcccc---eeeehhhhhhh--cc--------cccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR---YKVDVASFEAI--AL--------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~---~~~~~~~l~~~--~l--------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . .......   .....+.+..+  ++        ..++            ++.+|+++||||| ++||+.++..+.+++
T Consensus       104 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l  182 (238)
T cd03249         104 A-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL  182 (238)
T ss_pred             C-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            0 0000000   00011111111  11        1122            7899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+++|.|||++      ||+++++. +||++
T Consensus       183 ~~~~~g~~vi~~------sh~~~~~~-~~d~v  207 (238)
T cd03249         183 DRAMKGRTTIVI------AHRLSTIR-NADLI  207 (238)
T ss_pred             HHhcCCCEEEEE------eCCHHHHh-hCCEE
Confidence            887678999999      99999886 79984

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7e-29  Score=198.58  Aligned_cols=157  Identities=12%  Similarity=0.161  Sum_probs=112.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc--c---CCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK--A---SNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~---~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |++++|++++|+||||||||||+++|+|+++  |   ++|+|.++|.++...    ...++.++|++|++.. ..++.++
T Consensus        27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en  106 (253)
T PRK14261         27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYEN  106 (253)
T ss_pred             EEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHH
Confidence            5789999999999999999999999999975  3   489999999886422    2335679999998621 1355555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| +|||+.++.
T Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~  186 (253)
T PRK14261        107 VAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA  186 (253)
T ss_pred             HHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            443211100000000011122333333331            111            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+.+.+.++||++
T Consensus       187 ~l~~~l~~~~~~~tvii~------sh~~~~~~~~~d~v  218 (253)
T PRK14261        187 KIEDLIEDLKKEYTVIIV------THNMQQAARVSDYT  218 (253)
T ss_pred             HHHHHHHHHhhCceEEEE------EcCHHHHHhhCCEE
Confidence            999999988767899999      99999999999984

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.95  E-value=2.7e-29  Score=194.10  Aligned_cols=145  Identities=18%  Similarity=0.228  Sum_probs=106.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.++|++|+..  +..+..+++.+... 
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-   99 (198)
T TIGR01189        21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAA-   99 (198)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHH-
Confidence            57899999999999999999999999999999999999999876322 223467899998652  22445555432111 


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ...    .......+.++.+++...        +            ++.+|++++|||| ++||+.++..+.+++..+++
T Consensus       100 ~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  175 (198)
T TIGR01189       100 IHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA  175 (198)
T ss_pred             HcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            000    011123345555555422        1            7899999999999 69999999999999988755


Q ss_pred             -CCcEEEEecCCCCCCChhHH
Q 029421          137 -NIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~  156 (193)
                       |.|+|++      ||+...+
T Consensus       176 ~~~tii~~------sH~~~~~  190 (198)
T TIGR01189       176 RGGIVLLT------THQDLGL  190 (198)
T ss_pred             CCCEEEEE------Ecccccc
Confidence             8999999      8986433

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.95  E-value=5.2e-29  Score=196.44  Aligned_cols=155  Identities=14%  Similarity=0.203  Sum_probs=108.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++. ...+..+++.+....
T Consensus        24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~  103 (229)
T cd03254          24 FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPN  103 (229)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCC
Confidence            57899999999999999999999999999999999999999876432  223566999999762 112444544332111


Q ss_pred             CCCCCcccc---eeeehhhhhhh--cc--------cccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR---YKVDVASFEAI--AL--------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~---~~~~~~~l~~~--~l--------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . .......   .....+.++.+  ++        ..++            ++.+|+++||||| ++||+.++..+.+++
T Consensus       104 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l  182 (229)
T cd03254         104 A-TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL  182 (229)
T ss_pred             C-CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            0 0000000   00001111111  11        1222            8899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+++|.|||++      ||+.+.+. .||++
T Consensus       183 ~~~~~~~tii~~------sh~~~~~~-~~d~i  207 (229)
T cd03254         183 EKLMKGRTSIII------AHRLSTIK-NADKI  207 (229)
T ss_pred             HHhcCCCEEEEE------ecCHHHHh-hCCEE
Confidence            888668999999      99998875 48873

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.95  E-value=6.4e-29  Score=216.68  Aligned_cols=156  Identities=13%  Similarity=0.162  Sum_probs=114.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec-----CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL-----DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~-----~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++....   ..+..++|+||++     ++..++.+++.
T Consensus       284 l~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~  363 (510)
T PRK15439        284 LEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC  363 (510)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence            578999999999999999999999999999999999999998763211   1235689999863     22233444432


Q ss_pred             CCC-CC-CCCCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           73 ASS-PE-SYRWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        73 ~~~-~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ... .. ..............++++.+++. ...                    ++.+|++|||||| +|||+.++..+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~  443 (510)
T PRK15439        364 ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY  443 (510)
T ss_pred             hhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHH
Confidence            110 00 00000111112234566677764 221                    7889999999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ++++.+++ |.|||++      |||++++.++||+
T Consensus       444 ~~l~~l~~~g~tiIiv------sHd~~~i~~~~d~  472 (510)
T PRK15439        444 QLIRSIAAQNVAVLFI------SSDLEEIEQMADR  472 (510)
T ss_pred             HHHHHHHhCCCEEEEE------CCCHHHHHHhCCE
Confidence            99999876 9999999      9999999999998

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.3e-29  Score=202.27  Aligned_cols=157  Identities=11%  Similarity=0.135  Sum_probs=111.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|.+|++++|+||||||||||+++|+|+.+     |++|+|.++|.++...    ...++.++|++|++.. ..+..++
T Consensus        60 l~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en  139 (286)
T PRK14275         60 ADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDN  139 (286)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHH
Confidence            5789999999999999999999999999864     4999999999876321    1235679999998621 1255555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~  219 (286)
T PRK14275        140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA  219 (286)
T ss_pred             HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            443211000000000011122333333321            111            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++.+.|||++      |||.+++.++||++
T Consensus       220 ~l~~~L~~~~~~~tvIiv------sH~~~~~~~~~d~i  251 (286)
T PRK14275        220 KIEDLIQELRGSYTIMIV------THNMQQASRVSDYT  251 (286)
T ss_pred             HHHHHHHHHhcCCeEEEE------eCCHHHHHHhCCEE
Confidence            999999888667899999      99999999999984

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.2e-28  Score=192.96  Aligned_cols=149  Identities=18%  Similarity=0.215  Sum_probs=118.4

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeec--CCcccccccccC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      +.+..-+++|.|+||||||||+++|+|+.+|+.|.|.++|.....      .+..++++||+||+.  ++.+++..|+.+
T Consensus        20 ~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~Y   99 (352)
T COG4148          20 TLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRY   99 (352)
T ss_pred             cCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhh
Confidence            334436999999999999999999999999999999999987521      234578999999987  677777777665


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .....       ......+....+|+.++.                    |+..|++|+|||| ++||..-+.++.-+++
T Consensus       100 G~~~~-------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylE  172 (352)
T COG4148         100 GMWKS-------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE  172 (352)
T ss_pred             hhccc-------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHH
Confidence            43211       111122344455555442                    8899999999999 8999999999999999


Q ss_pred             HHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+  +..|++|      ||.++++.++||++
T Consensus       173 RL~~e~~IPIlYV------SHS~~Ev~RLAd~v  199 (352)
T COG4148         173 RLRDEINIPILYV------SHSLDEVLRLADRV  199 (352)
T ss_pred             HHHHhcCCCEEEE------ecCHHHHHhhhheE
Confidence            8865  9999999      99999999999994

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.95  E-value=9.1e-29  Score=194.07  Aligned_cols=147  Identities=13%  Similarity=0.209  Sum_probs=107.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..  ....++.++|++|++. ...+..+++..... 
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~-  103 (221)
T cd03244          25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE-  103 (221)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCC-
Confidence            5789999999999999999999999999999999999999988643  2233567999999863 12244454432110 


Q ss_pred             CCCCCcccceeeehhhhhhhcc-------------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIAL-------------------PELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l-------------------~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                          ...   ....+.++.+++                   ..++            ++.+|+++||||| ++||+.++.
T Consensus       104 ----~~~---~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~  176 (221)
T cd03244         104 ----YSD---EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA  176 (221)
T ss_pred             ----CCH---HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence                000   001111111111                   1111            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .+.++++.+.++.|||++      ||+.+++.. ||+
T Consensus       177 ~l~~~l~~~~~~~tii~~------sh~~~~~~~-~d~  206 (221)
T cd03244         177 LIQKTIREAFKDCTVLTI------AHRLDTIID-SDR  206 (221)
T ss_pred             HHHHHHHHhcCCCEEEEE------eCCHHHHhh-CCE
Confidence            999999988668899999      999988865 877

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.5e-29  Score=199.31  Aligned_cols=157  Identities=16%  Similarity=0.204  Sum_probs=112.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE------chh--hccCCceeeEEEeecC--Cccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY------TGE--IRQGGQRVGFEVVTLD--DRRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~------~~~--~~~~~~~ig~~~q~~~--~~~~~~~~   70 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|..      ...  ....+..++|++|++.  +..+..++
T Consensus        31 ~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~n  110 (257)
T PRK14246         31 IKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDN  110 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHH
Confidence            5789999999999999999999999999999999888887743      211  1123467999999863  23455555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhcccc------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALPE------------LQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++..            ++            ++.+|+++||||| ++||+.++.
T Consensus       111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~  190 (257)
T PRK14246        111 IAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ  190 (257)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHH
Confidence            4432111000111111112234444444421            11            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+++..++++.|||++      ||+...+..+||++
T Consensus       191 ~l~~~l~~~~~~~tiilv------sh~~~~~~~~~d~v  222 (257)
T PRK14246        191 AIEKLITELKNEIAIVIV------SHNPQQVARVADYV  222 (257)
T ss_pred             HHHHHHHHHhcCcEEEEE------ECCHHHHHHhCCEE
Confidence            999999888668999999      99999999999984

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=5.9e-29  Score=183.28  Aligned_cols=162  Identities=20%  Similarity=0.263  Sum_probs=123.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++.+||+++|+||||||||||+|+++.+++|++|.+.|.|+++..  ....+.+++|+.|.+.. ..++.+|+-++...
T Consensus        24 l~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~  103 (223)
T COG4619          24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQI  103 (223)
T ss_pred             eeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHH
Confidence            5789999999999999999999999999999999999999999753  33567889999998732 24666675554322


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc---------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ---------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~---------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      ....+   +.....+.+.++++.+..                     |..-|++|+|||| +.||+.++..+.+++..+.
T Consensus       104 r~rr~---dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v  180 (223)
T COG4619         104 RNRRP---DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV  180 (223)
T ss_pred             hccCC---ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh
Confidence            11111   122334556666654321                     7788999999999 6999999999999888764


Q ss_pred             -C-CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCCh
Q 029421          136 -S-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNR  175 (193)
Q Consensus       136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~  175 (193)
                       + ..+++++      |||-+++.+.+++    ++.+.++..
T Consensus       181 ~~q~vAv~Wi------THd~dqa~rha~k----~itl~~G~~  212 (223)
T COG4619         181 REQNVAVLWI------THDKDQAIRHADK----VITLQPGHA  212 (223)
T ss_pred             hhhceEEEEE------ecChHHHhhhhhe----EEEeccCcc
Confidence             4 8999999      9999998888887    344555433

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.95  E-value=1.1e-28  Score=197.45  Aligned_cols=140  Identities=19%  Similarity=0.237  Sum_probs=105.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcc----cccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRR----APLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~----~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|         +..++|++|++....    +..++..+.  
T Consensus        25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~---------~~~i~~v~q~~~~~~~l~~~~~~~~~~~--   93 (251)
T PRK09544         25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLRIGYVPQKLYLDTTLPLTVNRFLRLR--   93 (251)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---------ccCEEEeccccccccccChhHHHHHhcc--
Confidence            57899999999999999999999999999999999999876         235899999762111    111111110  


Q ss_pred             CCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                        ...    ......+.++.+++.+.        +            ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus        94 --~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~  167 (251)
T PRK09544         94 --PGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLR  167 (251)
T ss_pred             --ccc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence              000    01122344555554322        1            7899999999999 6999999999999998875


Q ss_pred             -C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 -S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 -~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       + |.|||++      ||+.+++.++||++
T Consensus       168 ~~~g~tiiiv------sH~~~~i~~~~d~i  191 (251)
T PRK09544        168 RELDCAVLMV------SHDLHLVMAKTDEV  191 (251)
T ss_pred             HhcCCEEEEE------ecCHHHHHHhCCEE
Confidence             4 8999999      99999999999984

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=5.2e-29  Score=192.15  Aligned_cols=144  Identities=14%  Similarity=0.166  Sum_probs=104.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....  .+.++|++|++.  ...++.+++.+.....
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~--~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~   98 (195)
T PRK13541         21 ITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA--KPYCTYIGHNLGLKLEMTVFENLKFWSEIY   98 (195)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh--hhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999999998764322  345789888652  2344555543211100


Q ss_pred             CCCCcccceeeehhhhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                       .     ......+.++.+++..        ++            ++.+|+++|+||| ++||+.++..+.++++...+ 
T Consensus        99 -~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~  172 (195)
T PRK13541         99 -N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS  172 (195)
T ss_pred             -c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence             0     0111223334444322        11            7899999999999 69999999999999976555 


Q ss_pred             CCcEEEEecCCCCCCChhHHHH
Q 029421          137 NIPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~  158 (193)
                      |.|+|++      ||+.+.+..
T Consensus       173 ~~tiii~------sh~~~~i~~  188 (195)
T PRK13541        173 GGIVLLS------SHLESSIKS  188 (195)
T ss_pred             CCEEEEE------eCCccccch
Confidence            8999999      999876654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7e-29  Score=220.85  Aligned_cols=157  Identities=13%  Similarity=0.224  Sum_probs=116.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch----------h-----hcc-CCceeeEEEeec---
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG----------E-----IRQ-GGQRVGFEVVTL---   61 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~----------~-----~~~-~~~~ig~~~q~~---   61 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|..+.          .     ... .++.+||++|++   
T Consensus        37 ~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~  116 (623)
T PRK10261         37 FSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTS  116 (623)
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhh
Confidence            678999999999999999999999999999999999999886331          0     011 134799999975   


Q ss_pred             -CCcccccccccCCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-
Q 029421           62 -DDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-  116 (193)
Q Consensus        62 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-  116 (193)
                       .+..++.+++.+..................++++.+++..           ++            ++.+|++|||||| 
T Consensus       117 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt  196 (623)
T PRK10261        117 LNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPT  196 (623)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence             2334555554432110001111111233456677777742           11            8899999999999 


Q ss_pred             CCccccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          117 GKMELFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       117 ~~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++||+.++..+.++++.+. + |+|||++      |||++.+.++||++
T Consensus       197 ~~LD~~~~~~l~~ll~~l~~~~g~tvi~i------tHdl~~~~~~adri  239 (623)
T PRK10261        197 TALDVTIQAQILQLIKVLQKEMSMGVIFI------THDMGVVAEIADRV  239 (623)
T ss_pred             CccCHHHHHHHHHHHHHHHHhcCCEEEEE------cCCHHHHHHhCCEE
Confidence            6999999999999999985 4 8999999      99999999999994

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-28  Score=196.99  Aligned_cols=157  Identities=13%  Similarity=0.164  Sum_probs=112.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|.+|++++|+||||||||||+++|+|+.+     |++|+|.++|.++..    ....++.++|+||++.. ..+..++
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~n  103 (250)
T PRK14266         24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDN  103 (250)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHH
Confidence            5789999999999999999999999999874     489999999988632    12335679999998621 1245555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~  183 (250)
T PRK14266        104 VAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTT  183 (250)
T ss_pred             HHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHH
Confidence            433211000000000111122333333331            122            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+.+++..+|+++
T Consensus       184 ~l~~~l~~~~~~~tiii~------sh~~~~~~~~~~~i  215 (250)
T PRK14266        184 KIEDLIHKLKEDYTIVIV------THNMQQATRVSKYT  215 (250)
T ss_pred             HHHHHHHHHhcCCeEEEE------ECCHHHHHhhcCEE
Confidence            999999988668899999      99999999999884

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.95  E-value=1.2e-28  Score=195.16  Aligned_cols=156  Identities=14%  Similarity=0.191  Sum_probs=108.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++. ...+..+++.+....
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~  101 (236)
T cd03253          22 FTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD  101 (236)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCC
Confidence            57899999999999999999999999999999999999999886432  223456999999862 123455554332111


Q ss_pred             CCCCCccc--ceeeehhhhhhh--cc--------cccc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           78 SYRWPTVG--RYKVDVASFEAI--AL--------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        78 ~~~~~~~~--~~~~~~~~l~~~--~l--------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ........  ......+.+..+  ++        ..++            ++.+|+++||||| ++||+.++..+.+++.
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~  181 (236)
T cd03253         102 ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR  181 (236)
T ss_pred             CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            00000000  000011111111  11        1222            8899999999999 6999999999999998


Q ss_pred             HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+++|.|||++      ||+.+.+.. ||++
T Consensus       182 ~~~~~~tiii~------sh~~~~~~~-~d~~  205 (236)
T cd03253         182 DVSKGRTTIVI------AHRLSTIVN-ADKI  205 (236)
T ss_pred             HhcCCCEEEEE------cCCHHHHHh-CCEE
Confidence            87668999999      999998864 8883

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.95  E-value=4.2e-28  Score=195.22  Aligned_cols=168  Identities=16%  Similarity=0.142  Sum_probs=112.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|..           ++++|..  .+..+..+++.+.... 
T Consensus        45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~-----------~~~~~~~~~~~~~tv~enl~~~~~~-  112 (264)
T PRK13546         45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV-----------SVIAISAGLSGQLTGIENIEFKMLC-  112 (264)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE-----------eEEecccCCCCCCcHHHHHHHHHHH-
Confidence            5789999999999999999999999999999999999998852           2333322  1223444443221000 


Q ss_pred             CCCCcccceeeehhhhhhhcccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                      ...............++.+++..        ++            ++.+|+++||||| ++||+.++..+.+++..+++ 
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~  192 (264)
T PRK13546        113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ  192 (264)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence            00110000011112222223221        11            7889999999999 69999999999999988865 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHHHHH
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQLTD  188 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~~~~  188 (193)
                      |.|||++      ||+...+..+||++    ++.+..  .++.+++..++...+.+
T Consensus       193 g~tiIii------sH~~~~i~~~~d~i~~l~~G~i~~--~g~~~~~~~~~~~~~~~  240 (264)
T PRK13546        193 NKTIFFV------SHNLGQVRQFCTKIAWIEGGKLKD--YGELDDVLPKYEAFLND  240 (264)
T ss_pred             CCEEEEE------cCCHHHHHHHcCEEEEEECCEEEE--eCCHHHHHHHhHHHHHH
Confidence            9999999      99999999999984    344432  34566666666554444

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-28  Score=199.98  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=113.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh---ccCCceeeEEEeecCC-cccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDD-RRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~-~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++...   ...+..++|++|++.. ..+..+++
T Consensus        42 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni  121 (276)
T PRK14271         42 MGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNV  121 (276)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHH
Confidence            57899999999999999999999999999986     699999999876421   2335679999998621 14555554


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccch
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      .+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~  201 (276)
T PRK14271        122 LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK  201 (276)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            33211000000000001112334444442            122            7899999999999 6999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.++++.++++.|||++      ||+++++..+||++
T Consensus       202 l~~~L~~~~~~~tiiiv------sH~~~~~~~~~dri  232 (276)
T PRK14271        202 IEEFIRSLADRLTVIIV------THNLAQAARISDRA  232 (276)
T ss_pred             HHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            99999888667899999      99999999999984

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.95  E-value=1.6e-28  Score=214.74  Aligned_cols=155  Identities=16%  Similarity=0.223  Sum_probs=114.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe-ceE---chhh-----ccCCceeeEEEeec--CCcccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ-GFY---TGEI-----RQGGQRVGFEVVTL--DDRRAPLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~-g~~---~~~~-----~~~~~~ig~~~q~~--~~~~~~~~   69 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++ |..   +...     ...++++||+||++  .+..++.+
T Consensus       305 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e  384 (520)
T TIGR03269       305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLD  384 (520)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHH
Confidence            5789999999999999999999999999999999999996 532   2111     12245699999975  23345555


Q ss_pred             cccCCCCCCCCCCcccceeeehhhhhhhcccc-------------cc------------cCCCCCEEEEecC-CCccccc
Q 029421           70 SINASSPESYRWPTVGRYKVDVASFEAIALPE-------------LQ------------VGADTDLFVIDEV-GKMELFS  123 (193)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------~~------------l~~~p~llllDEp-~~LD~~~  123 (193)
                      ++.+....  ............++++.+++..             ++            ++.+|++|||||| ++||+.+
T Consensus       385 ~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~  462 (520)
T TIGR03269       385 NLTEAIGL--ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT  462 (520)
T ss_pred             HHHHHHHc--CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            54322110  1111111122345666666642             11            7899999999999 6999999


Q ss_pred             cchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          124 SSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       124 ~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +..+.++++.++ + |.|||++      |||++++.++||++
T Consensus       463 ~~~l~~~l~~l~~~~g~tvi~v------sHd~~~~~~~~d~i  498 (520)
T TIGR03269       463 KVDVTHSILKAREEMEQTFIIV------SHDMDFVLDVCDRA  498 (520)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEE------eCCHHHHHHhCCEE
Confidence            999999998875 4 8999999      99999999999984

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.95  E-value=9.7e-29  Score=190.26  Aligned_cols=145  Identities=13%  Similarity=0.138  Sum_probs=106.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |++++|++++|+||||||||||+++|+|+.  +|++|+|.++|+++.  ...++.++|++|++.  ...+..+++.+...
T Consensus        28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~  105 (192)
T cd03232          28 GYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD--KNFQRSTGYVEQQDVHSPNLTVREALRFSAL  105 (192)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--HHhhhceEEecccCccccCCcHHHHHHHHHH
Confidence            578999999999999999999999999986  489999999998874  233467999999752  22344444332100


Q ss_pred             CCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChh
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIP  154 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~  154 (193)
                        ..       ..-.-..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+++ |.|+|++      ||+.+
T Consensus       106 --~~-------~LSgGe~qrv~la-~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiiv------tH~~~  169 (192)
T cd03232         106 --LR-------GLSVEQRKRLTIG-VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT------IHQPS  169 (192)
T ss_pred             --Hh-------cCCHHHhHHHHHH-HHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEE------EcCCh
Confidence              00       0000011122221 127889999999999 69999999999999998876 8999999      99988


Q ss_pred             -HHHHHhcCC
Q 029421          155 -AVARLRNHP  163 (193)
Q Consensus       155 -~~~~~~d~~  163 (193)
                       .+..+||++
T Consensus       170 ~~~~~~~d~i  179 (192)
T cd03232         170 ASIFEKFDRL  179 (192)
T ss_pred             HHHHhhCCEE
Confidence             477889883

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.5e-28  Score=199.96  Aligned_cols=155  Identities=15%  Similarity=0.206  Sum_probs=112.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++     |++|+|.++|.++..    ....++.++|++|++.. ..++.++
T Consensus        60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en  139 (285)
T PRK14254         60 MDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDN  139 (285)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHH
Confidence            6789999999999999999999999999987     689999999988632    12335679999998621 1244444


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+.... ..... .......+.++.+++.            .++            ++.+|++|||||| ++||+.++.
T Consensus       140 l~~~~~~-~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~  217 (285)
T PRK14254        140 VAYGLKI-QGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS  217 (285)
T ss_pred             HHHHHHH-cCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence            4321110 00110 1111223444444432            111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      |||.+++..+||++
T Consensus       218 ~l~~~L~~~~~~~tiii~------tH~~~~i~~~~dri  249 (285)
T PRK14254        218 KIEDLIEELAEEYTVVIV------THNMQQAARISDKT  249 (285)
T ss_pred             HHHHHHHHHhcCCEEEEE------eCCHHHHHhhcCEE
Confidence            999999988666799999      99999999999983

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.1e-28  Score=197.04  Aligned_cols=155  Identities=13%  Similarity=0.186  Sum_probs=111.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCCc-cccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDDR-RAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~~-~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++     |++|+|.++|.++..    ....++.++|++|++... .+..++
T Consensus        31 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~en  110 (264)
T PRK14243         31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDN  110 (264)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHH
Confidence            5789999999999999999999999999986     479999999987631    122356799999986211 255555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..... .... .......+.++.+++            ..++            ++.+|+++||||| ++||+.++.
T Consensus       111 l~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  188 (264)
T PRK14243        111 IAYGARIN-GYKG-DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL  188 (264)
T ss_pred             HHhhhhhc-Ccch-HHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            44322110 0000 000111122222222            1122            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+.++.|||++      ||+++++.++||++
T Consensus       189 ~l~~~L~~~~~~~tvi~v------tH~~~~~~~~~d~v  220 (264)
T PRK14243        189 RIEELMHELKEQYTIIIV------THNMQQAARVSDMT  220 (264)
T ss_pred             HHHHHHHHHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence            999999988767899999      99999999999984

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.5e-28  Score=198.74  Aligned_cols=157  Identities=15%  Similarity=0.171  Sum_probs=112.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++     |++|+|.++|.++..    ....++.++|++|++.. ..+..++
T Consensus        46 ~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en  125 (272)
T PRK14236         46 MRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYEN  125 (272)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHH
Confidence            6789999999999999999999999999987     489999999988642    12235679999997621 1255555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       126 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~  205 (272)
T PRK14236        126 VVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTL  205 (272)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence            433211000000000011122233333331            121            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      ||+.+++.++||++
T Consensus       206 ~l~~~L~~~~~~~tiiiv------tH~~~~~~~~~d~i  237 (272)
T PRK14236        206 KIEELITELKSKYTIVIV------THNMQQAARVSDYT  237 (272)
T ss_pred             HHHHHHHHHHhCCeEEEE------eCCHHHHHhhCCEE
Confidence            999999988668899999      99999999999984

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=5.2e-29  Score=195.87  Aligned_cols=152  Identities=16%  Similarity=0.157  Sum_probs=106.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-cCCceeeEEEeecCCcccccccccCCCCCC-
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-QGGQRVGFEVVTLDDRRAPLASINASSPES-   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~-   78 (193)
                      |+|++|++++++|||||||||++|++.|++.|++|.|.++|+++...+ ..-+++++++-+    ...+.+ .++.... 
T Consensus        45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gq----k~ql~W-dlp~~ds~  119 (325)
T COG4586          45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQ----KLQLWW-DLPALDSL  119 (325)
T ss_pred             eecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhh----hheeee-echhhhhH
Confidence            689999999999999999999999999999999999999999875422 233456665431    111111 1111000 


Q ss_pred             ------CCCCcccceeeehhhhhhhccc--------cc------------ccCCCCCEEEEecCC-CccccccchHHHHH
Q 029421           79 ------YRWPTVGRYKVDVASFEAIALP--------EL------------QVGADTDLFVIDEVG-KMELFSSSFFPAVL  131 (193)
Q Consensus        79 ------~~~~~~~~~~~~~~~l~~~~l~--------~~------------~l~~~p~llllDEp~-~LD~~~~~~~~~ll  131 (193)
                            +..+...-.++....-+-+++.        .+            +|+.+|++|+||||+ |||..++..+.+.+
T Consensus       120 ~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Fl  199 (325)
T COG4586         120 EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL  199 (325)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHH
Confidence                  0011100001111111222222        11            188999999999997 99999999999999


Q ss_pred             HHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++..+  +.||+++      ||+++.+.++|+++
T Consensus       200 ke~n~~~~aTVllT------TH~~~di~~lc~rv  227 (325)
T COG4586         200 KEYNEERQATVLLT------THIFDDIATLCDRV  227 (325)
T ss_pred             HHHHHhhCceEEEE------ecchhhHHHhhhhe
Confidence            98864  9999999      99999999999994

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.95  E-value=6.8e-29  Score=212.78  Aligned_cols=176  Identities=18%  Similarity=0.259  Sum_probs=127.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC----CCCeEEeceEchhh------ccCCceeeEEEeecCCccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS----NPSLKVQGFYTGEI------RQGGQRVGFEVVTLDDRRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~----~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~~~~~~~~~   70 (193)
                      |+|.+||++||+|.|||||||+.+.|.|++++.    +|+|.++|.++...      ...+++|+|+||++...+++...
T Consensus        30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~t  109 (539)
T COG1123          30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMT  109 (539)
T ss_pred             EEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhh
Confidence            689999999999999999999999999999987    79999999875221      23457899999998433333211


Q ss_pred             ccCCCCC----CCCCCcccceeeehhhhhhhccccc----------------------ccCCCCCEEEEecC-CCccccc
Q 029421           71 INASSPE----SYRWPTVGRYKVDVASFEAIALPEL----------------------QVGADTDLFVIDEV-GKMELFS  123 (193)
Q Consensus        71 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~l~~~p~llllDEp-~~LD~~~  123 (193)
                      +.....+    .......+......+.|+.+++++-                      +++++|++||+||| ++||+..
T Consensus       110 Ig~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~  189 (539)
T COG1123         110 IGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT  189 (539)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Confidence            1111100    0001122233455677777777431                      18899999999999 6999999


Q ss_pred             cchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEE--EEeCCCChhHHHHHH
Q 029421          124 SSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATI--FTLSPGNRDSLKDNI  182 (193)
Q Consensus       124 ~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~--~~~~~~~~~~l~~~~  182 (193)
                      +.++.++++.+.+  |.++|++      |||+..+.++||++.+..  ..+..+..+++..+-
T Consensus       190 q~qIL~llk~l~~e~g~a~l~I------THDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p  246 (539)
T COG1123         190 QAQILDLLKDLQRELGMAVLFI------THDLGVVAELADRVVVMYKGEIVETGPTEEILSNP  246 (539)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEE------cCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhcc
Confidence            9999999999864  9999999      999999999999953322  134445555555443

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.95  E-value=9.9e-29  Score=216.38  Aligned_cols=157  Identities=14%  Similarity=0.205  Sum_probs=113.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchhh-----c-cCCceeeEEEeecC----Ccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEI-----R-QGGQRVGFEVVTLD----DRR   65 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~~-----~-~~~~~ig~~~q~~~----~~~   65 (193)
                      |+|.+||+++|+||||||||||+|+|+|+++|     ++|+|.++|.++...     . ..++++||+||++.    +..
T Consensus        30 l~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~  109 (529)
T PRK15134         30 LQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH  109 (529)
T ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchh
Confidence            67899999999999999999999999999986     799999999886321     1 12357999999852    112


Q ss_pred             cccccccCCCCCCCCCCcccceeeehhhhhhhcccc-----------cc------------cCCCCCEEEEecC-CCccc
Q 029421           66 APLASINASSPESYRWPTVGRYKVDVASFEAIALPE-----------LQ------------VGADTDLFVIDEV-GKMEL  121 (193)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~------------l~~~p~llllDEp-~~LD~  121 (193)
                      +..++.....................+.++.+++.+           ++            ++.+|++|||||| ++||+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~  189 (529)
T PRK15134        110 TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDV  189 (529)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCH
Confidence            222222110000001111111233445666666642           11            8899999999999 69999


Q ss_pred             cccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          122 FSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       122 ~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++..+.++++.++ + |.|||++      |||++.+..+||++
T Consensus       190 ~~~~~l~~~l~~l~~~~g~tvi~v------tHd~~~~~~~~dri  227 (529)
T PRK15134        190 SVQAQILQLLRELQQELNMGLLFI------THNLSIVRKLADRV  227 (529)
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEE------cCcHHHHHHhcCEE
Confidence            99999999998875 4 8999999      99999999999984

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.95  E-value=1.1e-28  Score=214.37  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=111.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCcc-ccccc-ccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDRR-APLAS-INASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~~-~~~~~-~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+....  ...++.++|++|++.... +...+ ......
T Consensus        24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~  103 (490)
T PRK10938         24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTA  103 (490)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHH
Confidence            67899999999999999999999999999999999999988765221  122346899999752111 11000 000000


Q ss_pred             CCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      ...... ........+.++.+++.+..                    ++.+|+++||||| ++||+.++..+.++++.++
T Consensus       104 ~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  182 (490)
T PRK10938        104 EIIQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH  182 (490)
T ss_pred             Hhcccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            000000 01112234556666664321                    7899999999999 6999999999999999887


Q ss_pred             C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      + |.|||++      |||++.+.++||++
T Consensus       183 ~~g~tvii~------tH~~~~~~~~~d~v  205 (490)
T PRK10938        183 QSGITLVLV------LNRFDEIPDFVQFA  205 (490)
T ss_pred             hcCCeEEEE------eCCHHHHHhhCCEE
Confidence            6 8999999      99999999999984

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.8e-28  Score=184.98  Aligned_cols=157  Identities=14%  Similarity=0.144  Sum_probs=113.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.+...  .....+.-+.+||+..  ..+++.+...+...
T Consensus        22 l~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~  101 (259)
T COG4559          22 LDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI  101 (259)
T ss_pred             eeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccc
Confidence            5688999999999999999999999999999999999999998643  2233455578888652  11233333333221


Q ss_pred             CCC-CCCcccceeeehhhhhhhcccccc--------------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           77 ESY-RWPTVGRYKVDVASFEAIALPELQ--------------------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        77 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~--------------------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ... .....+..+.....+...++..+.                          -..+++.|+|||| ++||+..+....
T Consensus       102 p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl  181 (259)
T COG4559         102 PHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL  181 (259)
T ss_pred             ccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH
Confidence            111 011112223344555555544332                          3356689999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++. |..|+.+      -||++.+..|||++
T Consensus       182 ~laR~la~~g~~V~~V------LHDLNLAA~YaDri  211 (259)
T COG4559         182 RLARQLAREGGAVLAV------LHDLNLAAQYADRI  211 (259)
T ss_pred             HHHHHHHhcCCcEEEE------EccchHHHHhhhee
Confidence            99999987 9999999      99999999999994

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2e-28  Score=196.87  Aligned_cols=157  Identities=13%  Similarity=0.146  Sum_probs=111.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-----NPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-----~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |++++|++++|+||||||||||+++|+|+++|+     +|+|.++|+++...    ...++.++|++|++.. ..+..++
T Consensus        28 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en  107 (261)
T PRK14258         28 MEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDN  107 (261)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHH
Confidence            678999999999999999999999999999985     79999999875311    2235679999997521 1344454


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..................+.++.+++.            .++            ++.+|+++||||| ++||+.++.
T Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~  187 (261)
T PRK14258        108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM  187 (261)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            432110000001101111223344444431            121            8899999999999 699999999


Q ss_pred             hHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++ + |.|||++      |||+.++.++||++
T Consensus       188 ~l~~~l~~l~~~~~~tiiiv------sH~~~~i~~~~d~i  221 (261)
T PRK14258        188 KVESLIQSLRLRSELTMVIV------SHNLHQVSRLSDFT  221 (261)
T ss_pred             HHHHHHHHHHHhCCCEEEEE------ECCHHHHHHhcCEE
Confidence            9999998874 3 8999999      99999999999983

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.95  E-value=5.3e-28  Score=187.57  Aligned_cols=154  Identities=10%  Similarity=0.094  Sum_probs=107.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK---ASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~---~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~   74 (193)
                      |+|++|++++|+||||||||||+++|+|+++   |++|+|.++|.++... ...++.++|++|+.  .+..++.+++.+.
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  107 (202)
T cd03233          28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA  107 (202)
T ss_pred             EEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhh
Confidence            5789999999999999999999999999999   8999999999886432 23456799999975  2334555554432


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCC
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGR  151 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tH  151 (193)
                      ...... ....  ..-.-..+++.+. ..++.+|+++||||| ++||+.++..+.++++.+.+  +.|+|+++     +|
T Consensus       108 ~~~~~~-~~~~--~LS~Ge~qrl~la-ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~-----~h  178 (202)
T cd03233         108 LRCKGN-EFVR--GISGGERKRVSIA-EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSL-----YQ  178 (202)
T ss_pred             hhhccc-cchh--hCCHHHHHHHHHH-HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE-----cC
Confidence            110000 0000  0000011122221 237889999999999 69999999999999998754  56666551     56


Q ss_pred             ChhHHHHHhcCC
Q 029421          152 DIPAVARLRNHP  163 (193)
Q Consensus       152 d~~~~~~~~d~~  163 (193)
                      +.+.+.++||++
T Consensus       179 ~~~~~~~~~d~i  190 (202)
T cd03233         179 ASDEIYDLFDKV  190 (202)
T ss_pred             CHHHHHHhCCeE
Confidence            667888899983

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.3e-28  Score=195.46  Aligned_cols=156  Identities=13%  Similarity=0.164  Sum_probs=109.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc--c---CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK--A---SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~---~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|.+|++++|+||||||||||+++|+|+.+  |   ++|+|.++|.++..    ....++.++|++|++.. ..+..++
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n  105 (252)
T PRK14255         26 LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYEN  105 (252)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHH
Confidence            5789999999999999999999999999875  4   58999999987632    11234679999998621 1344555


Q ss_pred             ccCCCCCCCCCCcccc-eeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCcccccc
Q 029421           71 INASSPESYRWPTVGR-YKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      +.+.... ........ .....+.++.+++            ..++            ++.+|+++||||| ++||+.++
T Consensus       106 l~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~  184 (252)
T PRK14255        106 VIYGLRL-AGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS  184 (252)
T ss_pred             HHHHHHH-cCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            4322110 00000000 0111122222222            1121            8899999999999 69999999


Q ss_pred             chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+.++++.+.++.|||++      ||+.+.+.++||++
T Consensus       185 ~~l~~~l~~~~~~~tii~v------sH~~~~~~~~~d~i  217 (252)
T PRK14255        185 TQIENMLLELRDQYTIILV------THSMHQASRISDKT  217 (252)
T ss_pred             HHHHHHHHHHHhCCEEEEE------ECCHHHHHHhCCEE
Confidence            9999999888667899999      99999999999984

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.95  E-value=9.9e-29  Score=204.36  Aligned_cols=146  Identities=12%  Similarity=0.151  Sum_probs=110.4

Q ss_pred             EEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCCCCCCccccee
Q 029421           11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPESYRWPTVGRYK   88 (193)
Q Consensus        11 l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (193)
                      |+||||||||||+|+|+|+++|++|+|.++|+++......+++++|+||++  ++..++.+|+.+.... ..........
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM-RKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh-cCCCHHHHHH
Confidence            689999999999999999999999999999998744333356799999986  3345666665543211 0111111112


Q ss_pred             eehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C-CCcEEEEec
Q 029421           89 VDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S-NIPVLASIP  145 (193)
Q Consensus        89 ~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~  145 (193)
                      ...++++.+++..+.                    ++.+|+++||||| ++||+.++..+.++++.+. + |.|+|++  
T Consensus        80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv--  157 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV--  157 (325)
T ss_pred             HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE--
Confidence            334566666664321                    8899999999999 7999999999999998875 4 8999999  


Q ss_pred             CCCCCCChhHHHHHhcCC
Q 029421          146 APKSGRDIPAVARLRNHP  163 (193)
Q Consensus       146 ~~~~tHd~~~~~~~~d~~  163 (193)
                          |||++++.++||++
T Consensus       158 ----THd~~e~~~~~d~i  171 (325)
T TIGR01187       158 ----THDQEEAMTMSDRI  171 (325)
T ss_pred             ----eCCHHHHHHhCCEE
Confidence                99999999999984

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.95  E-value=2.1e-28  Score=214.35  Aligned_cols=156  Identities=18%  Similarity=0.218  Sum_probs=115.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cCCceeeEEEeec----CCcccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QGGQRVGFEVVTL----DDRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~~~~ig~~~q~~----~~~~~~~~~~   71 (193)
                      |+|++|++++|+||||||||||+|+|+|+++ ++|+|+++|.++....     ..+++++|+||++    .+..++.+++
T Consensus       307 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l  385 (529)
T PRK15134        307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII  385 (529)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence            6789999999999999999999999999985 8999999998764221     1245799999985    2234555554


Q ss_pred             cCCCCCCC-CCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           72 NASSPESY-RWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        72 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      .+...... ............++++.+++. ..        +            ++.+|++|||||| ++||+.++..+.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  465 (529)
T PRK15134        386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL  465 (529)
T ss_pred             HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH
Confidence            33211000 011111112344566666764 21        1            7899999999999 699999999999


Q ss_pred             HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.++ + |.|||++      |||++++..+||++
T Consensus       466 ~~l~~~~~~~~~tvi~v------sHd~~~~~~~~d~i  496 (529)
T PRK15134        466 ALLKSLQQKHQLAYLFI------SHDLHVVRALCHQV  496 (529)
T ss_pred             HHHHHHHHhhCCEEEEE------eCCHHHHHHhcCeE
Confidence            9999875 4 8999999      99999999999994

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.95  E-value=7.6e-28  Score=186.38  Aligned_cols=145  Identities=12%  Similarity=0.117  Sum_probs=105.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc---cCCceeeEEEeecCC--cccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLDD--RRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~~--~~~~~~~~~~   73 (193)
                      |++.+|++++|+||||||||||+++|+|+  ++|++|+|.++|.++....   ..+..++|++|++..  ..+..++...
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~  100 (200)
T cd03217          21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY  100 (200)
T ss_pred             eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence            67899999999999999999999999999  5799999999999874321   123459999997521  1111111100


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCC
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGR  151 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tH  151 (193)
                             ..    ...-.-..+++.+. ..++.+|+++||||| ++||+.++..+.+++..+++ |.|||++      ||
T Consensus       101 -------~~----~~LS~G~~qrv~la-ral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~------sh  162 (200)
T cd03217         101 -------VN----EGFSGGEKKRNEIL-QLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLII------TH  162 (200)
T ss_pred             -------cc----ccCCHHHHHHHHHH-HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEE------ec
Confidence                   00    00000111222221 237889999999999 69999999999999988866 8999999      99


Q ss_pred             ChhHHHH-HhcCC
Q 029421          152 DIPAVAR-LRNHP  163 (193)
Q Consensus       152 d~~~~~~-~~d~~  163 (193)
                      +++.+.+ +||++
T Consensus       163 ~~~~~~~~~~d~i  175 (200)
T cd03217         163 YQRLLDYIKPDRV  175 (200)
T ss_pred             CHHHHHHhhCCEE
Confidence            9998887 79984

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.95  E-value=4.6e-28  Score=188.41  Aligned_cols=148  Identities=14%  Similarity=0.200  Sum_probs=107.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++. ...+..+++.+... 
T Consensus        29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~-  107 (207)
T cd03369          29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE-  107 (207)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCC-
Confidence            57899999999999999999999999999999999999999886422  123567999999862 12244444322110 


Q ss_pred             CCCCCcccceeeehhhhh-hhccccc------------ccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEE
Q 029421           78 SYRWPTVGRYKVDVASFE-AIALPEL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLAS  143 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~-~~~l~~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~  143 (193)
                         ...    ....+.++ ......+            .++.+|+++||||| ++||+.++..+.++++.+.+|.|+|++
T Consensus       108 ---~~~----~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~  180 (207)
T cd03369         108 ---YSD----EEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTI  180 (207)
T ss_pred             ---CCH----HHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence               000    00111111 0001111            17889999999999 699999999999999887668999999


Q ss_pred             ecCCCCCCChhHHHHHhcCC
Q 029421          144 IPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       144 ~~~~~~tHd~~~~~~~~d~~  163 (193)
                            ||+.+.+.. ||++
T Consensus       181 ------th~~~~~~~-~d~v  193 (207)
T cd03369         181 ------AHRLRTIID-YDKI  193 (207)
T ss_pred             ------eCCHHHHhh-CCEE
Confidence                  999988865 8873

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.95  E-value=2.1e-28  Score=235.59  Aligned_cols=156  Identities=15%  Similarity=0.060  Sum_probs=121.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-hccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-IRQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++.+||+||+.  .+..++.+++.+....
T Consensus       951 l~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257       951 ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred             EEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999998742 233456799999986  3445666665442111


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                       .............+.++.+++.+..                    ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus      1031 -kg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~ 1109 (2272)
T TIGR01257      1031 -KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS 1109 (2272)
T ss_pred             -cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC
Confidence             1111111122345567777765431                    8899999999999 69999999999999999867


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |.|||++      ||+++++..+||++
T Consensus      1110 g~TIIlt------THdmdea~~laDrI 1130 (2272)
T TIGR01257      1110 GRTIIMS------THHMDEADLLGDRI 1130 (2272)
T ss_pred             CCEEEEE------ECCHHHHHHhCCEE
Confidence            9999999      99999999999994

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.2e-28  Score=211.45  Aligned_cols=157  Identities=7%  Similarity=0.046  Sum_probs=111.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecC-----Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD-----DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~-----~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...+   ..++.++|++|+..     +..+..++..
T Consensus       269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~  348 (491)
T PRK10982        269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSL  348 (491)
T ss_pred             EEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhee
Confidence            578999999999999999999999999999999999999998764221   12455899998641     2222222211


Q ss_pred             CCCCC-C---CCC-Ccccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccc
Q 029421           73 ASSPE-S---YRW-PTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        73 ~~~~~-~---~~~-~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      ..... .   ... ..........+.++.+++. ..        +            ++.+|++|||||| +|||+.++.
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~  428 (491)
T PRK10982        349 ISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKF  428 (491)
T ss_pred             hhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHH
Confidence            11000 0   000 0000111223445555552 11        1            7899999999999 699999999


Q ss_pred             hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+.+ |.|||++      |||++++.++||++
T Consensus       429 ~~~~~l~~l~~~~~tvi~v------sHd~~~~~~~~d~v  461 (491)
T PRK10982        429 EIYQLIAELAKKDKGIIII------SSEMPELLGITDRI  461 (491)
T ss_pred             HHHHHHHHHHHCCCEEEEE------CCChHHHHhhCCEE
Confidence            99999998876 9999999      99999999999993

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.95  E-value=8.2e-28  Score=192.91  Aligned_cols=176  Identities=8%  Similarity=0.111  Sum_probs=116.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.. ..+..++...... 
T Consensus        42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~-  120 (257)
T cd03288          42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK-  120 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCC-
Confidence            57899999999999999999999999999999999999999886432  2335679999997621 1233333221100 


Q ss_pred             CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . .......   .....+.++.+  ++.        .++            ++.+|+++||||| ++||+.++..+.+++
T Consensus       121 ~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  199 (257)
T cd03288         121 C-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVV  199 (257)
T ss_pred             C-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            0 0000000   00011112221  111        111            8899999999999 699999998899988


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQLT  187 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~~~  187 (193)
                      +.+.++.|||++      ||+++.+.. ||++    ++.++.  .++.+++.+.....+.
T Consensus       200 ~~~~~~~tiii~------sh~~~~~~~-~dri~~l~~G~i~~--~g~~~~~~~~~~~~~~  250 (257)
T cd03288         200 MTAFADRTVVTI------AHRVSTILD-ADLVLVLSRGILVE--CDTPENLLAQEDGVFA  250 (257)
T ss_pred             HHhcCCCEEEEE------ecChHHHHh-CCEEEEEECCEEEE--eCCHHHHHhccchHHH
Confidence            887668999999      999998875 8884    344432  2445555444333333

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.95  E-value=5e-28  Score=211.59  Aligned_cols=156  Identities=13%  Similarity=0.158  Sum_probs=113.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEec-----------------------eEch-------h--
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQG-----------------------FYTG-------E--   46 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g-----------------------~~~~-------~--   46 (193)
                      |++.+|++++|+||||||||||+|+|+|++  +|++|+|.++|                       .++.       .  
T Consensus        21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  100 (520)
T TIGR03269        21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLS  100 (520)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccC
Confidence            578999999999999999999999999997  79999999972                       2110       0  


Q ss_pred             ---hccCCceeeEEEeec---CCcccccccccCCCCCCCCCCcccceeeehhhhhhhcccccc-----------------
Q 029421           47 ---IRQGGQRVGFEVVTL---DDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ-----------------  103 (193)
Q Consensus        47 ---~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------------  103 (193)
                         ....++.++|+||++   .+..++.+++.+.... .............++++.+++.+..                 
T Consensus       101 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~i  179 (520)
T TIGR03269       101 DKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE-IGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVL  179 (520)
T ss_pred             HHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHH
Confidence               012245699999962   2334555554332110 1111111122344566777764321                 


Q ss_pred             ---cCCCCCEEEEecC-CCccccccchHHHHHHHH-hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          104 ---VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL-ES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       104 ---l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l-~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                         ++.+|++|||||| ++||+.++..+.++++.+ ++ |.|||++      |||++.+.++||++
T Consensus       180 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv------tHd~~~~~~~~d~i  239 (520)
T TIGR03269       180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT------SHWPEVIEDLSDKA  239 (520)
T ss_pred             HHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE------eCCHHHHHHhcCEE
Confidence               8899999999999 699999999999999887 44 8999999      99999999999984

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.95  E-value=9.8e-28  Score=186.15  Aligned_cols=143  Identities=15%  Similarity=0.201  Sum_probs=101.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|           +++|++|++. ...+..+++.+....  
T Consensus        26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-----------~i~~~~q~~~l~~~t~~enl~~~~~~--   92 (204)
T cd03250          26 LEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------SIAYVSQEPWIQNGTIRENILFGKPF--   92 (204)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----------EEEEEecCchhccCcHHHHhccCCCc--
Confidence            57899999999999999999999999999999999999988           5899999872 233555665442211  


Q ss_pred             CCCcccce--e-eehhhhhhh--c--------ccccc------------cCCCCCEEEEecC-CCccccccchHHH-HHH
Q 029421           80 RWPTVGRY--K-VDVASFEAI--A--------LPELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA-VLR  132 (193)
Q Consensus        80 ~~~~~~~~--~-~~~~~l~~~--~--------l~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~-ll~  132 (193)
                      ........  . ...+.+...  +        ...++            ++.+|+++|+||| ++||+.++..+.+ +++
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~  172 (204)
T cd03250          93 DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL  172 (204)
T ss_pred             CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            00000000  0 001111111  0        01121            8899999999999 6999999877766 566


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+ |.|||++      ||+...+.. ||++
T Consensus       173 ~~~~~~~tvi~~------sh~~~~~~~-~d~i  197 (204)
T cd03250         173 GLLLNNKTRILV------THQLQLLPH-ADQI  197 (204)
T ss_pred             HhccCCCEEEEE------eCCHHHHhh-CCEE
Confidence            6544 8999999      999988876 8873

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.9e-28  Score=196.50  Aligned_cols=155  Identities=14%  Similarity=0.187  Sum_probs=110.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh----hccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE----IRQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++..    ....++.++|+||++.. ..++.++
T Consensus        41 ~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~n  120 (274)
T PRK14265         41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYEN  120 (274)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHH
Confidence            67899999999999999999999999999863     68999999987632    12235679999998621 1244555


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      +.+..... .... .......+.++.+++            ..++            ++.+|+++||||| ++||+.++.
T Consensus       121 l~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~  198 (274)
T PRK14265        121 IAFAPRAN-GYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR  198 (274)
T ss_pred             HHhHHHhc-CchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence            43321100 0000 000111122222222            1111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.++++.|||++      |||.+++.++||++
T Consensus       199 ~l~~~L~~~~~~~tiii~------sH~~~~~~~~~d~i  230 (274)
T PRK14265        199 QVEELCLELKEQYTIIMV------THNMQQASRVADWT  230 (274)
T ss_pred             HHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            999999988768899999      99999999999984

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.95  E-value=1e-27  Score=180.64  Aligned_cols=134  Identities=15%  Similarity=0.195  Sum_probs=99.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.++|.         +.++|++|++. ...+..+++.+.     
T Consensus        22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~q~~~~~~~tv~~nl~~~-----   87 (166)
T cd03223          22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------EDLLFLPQRPYLPLGTLREQLIYP-----   87 (166)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------ceEEEECCCCccccccHHHHhhcc-----
Confidence            578999999999999999999999999999999999998762         57899999762 223445554321     


Q ss_pred             CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHH
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~  158 (193)
                       ..  .  ..-.-..+++.+. ..++.+|+++|+||| ++||+.++..+.++++.+  +.|+|++      |||.+.. .
T Consensus        88 -~~--~--~LS~G~~~rv~la-ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiiv------sh~~~~~-~  152 (166)
T cd03223          88 -WD--D--VLSGGEQQRLAFA-RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISV------GHRPSLW-K  152 (166)
T ss_pred             -CC--C--CCCHHHHHHHHHH-HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEE------eCChhHH-h
Confidence             00  0  0000111222221 236789999999999 699999998888888766  6899999      9998754 5


Q ss_pred             HhcCC
Q 029421          159 LRNHP  163 (193)
Q Consensus       159 ~~d~~  163 (193)
                      +||++
T Consensus       153 ~~d~i  157 (166)
T cd03223         153 FHDRV  157 (166)
T ss_pred             hCCEE
Confidence            88873

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.95  E-value=4.8e-28  Score=193.55  Aligned_cols=157  Identities=10%  Similarity=0.118  Sum_probs=108.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc--cCC-ceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR--QGG-QRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~--~~~-~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |++++|++++|+||||||||||+++|+|+  ++|++|+|.++|.++....  ... ..++|++|++.  +..+..++..+
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~  107 (252)
T CHL00131         28 LSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRL  107 (252)
T ss_pred             eEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHH
Confidence            67899999999999999999999999998  5799999999998764321  112 24778888752  22223333221


Q ss_pred             CCCC---CCCCCcc---cceeeehhhhhhhccc----------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421           74 SSPE---SYRWPTV---GRYKVDVASFEAIALP----------ELQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        74 ~~~~---~~~~~~~---~~~~~~~~~l~~~~l~----------~~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      ....   .......   .......+.++.+++.          .++            ++.+|+++||||| ++||+.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~  187 (252)
T CHL00131        108 AYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDAL  187 (252)
T ss_pred             hhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence            1100   0000000   0001123344444443          122            7899999999999 69999999


Q ss_pred             chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421          125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~  163 (193)
                      ..+.++++.+.+ |.|||++      |||.+.+..+ ||++
T Consensus       188 ~~l~~~l~~~~~~g~tii~~------tH~~~~~~~~~~d~i  222 (252)
T CHL00131        188 KIIAEGINKLMTSENSIILI------THYQRLLDYIKPDYV  222 (252)
T ss_pred             HHHHHHHHHHHhCCCEEEEE------ecCHHHHHhhhCCEE
Confidence            999999988866 8999999      9999988876 7873

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=1.5e-28  Score=183.09  Aligned_cols=157  Identities=14%  Similarity=0.191  Sum_probs=121.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---------------hccCCceeeEEEeecC--C
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---------------IRQGGQRVGFEVVTLD--D   63 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---------------~~~~~~~ig~~~q~~~--~   63 (193)
                      ++.+.|+++.|+|.|||||||+||||+-+..|+.|.|.++|+.+.-               ....+.+.|++||+++  .
T Consensus        27 L~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWs  106 (256)
T COG4598          27 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWS  106 (256)
T ss_pred             eecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhH
Confidence            3567899999999999999999999999999999999999986521               1122457899999874  3


Q ss_pred             cccccccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421           64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELF  122 (193)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~  122 (193)
                      .++.++|............+.+....+...+.++|+.+..                    |+.+|+++++||| ++|||.
T Consensus       107 HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPE  186 (256)
T COG4598         107 HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE  186 (256)
T ss_pred             HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHH
Confidence            4566666432221122233333334556677777776432                    8999999999999 699999


Q ss_pred             ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ...++..+++.+++ |.|++++      ||.+.++...++++
T Consensus       187 lVgEVLkv~~~LAeEgrTMv~V------THEM~FAR~Vss~v  222 (256)
T COG4598         187 LVGEVLKVMQDLAEEGRTMVVV------THEMGFARDVSSHV  222 (256)
T ss_pred             HHHHHHHHHHHHHHhCCeEEEE------eeehhHHHhhhhhe
Confidence            99999999999987 9999999      99999999998883

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.95  E-value=4e-28  Score=193.48  Aligned_cols=157  Identities=12%  Similarity=0.167  Sum_probs=107.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCCCCeEEeceEchhhc---cCCceeeEEEeecCCc--ccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLDDR--RAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~~~--~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+++|+|++  +|++|+|.++|.++....   ..+..++|++|++...  .+.......
T Consensus        22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~  101 (248)
T PRK09580         22 LEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT  101 (248)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHH
Confidence            578999999999999999999999999995  699999999998763221   1234689999976211  111111000


Q ss_pred             CCC--CCCCC----Ccccceeeehhhhhhhccc----------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421           74 SSP--ESYRW----PTVGRYKVDVASFEAIALP----------ELQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        74 ~~~--~~~~~----~~~~~~~~~~~~l~~~~l~----------~~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      ...  .....    ..........+.++.+++.          .++            ++.+|+++||||| ++||+.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~  181 (248)
T PRK09580        102 ALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL  181 (248)
T ss_pred             hhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence            000  00000    0000011122333433432          233            8899999999999 69999999


Q ss_pred             chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421          125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~  163 (193)
                      ..+.++++.+++ |.|||++      |||...+..+ ||++
T Consensus       182 ~~l~~~l~~l~~~~~tiii~------sH~~~~~~~~~~d~i  216 (248)
T PRK09580        182 KIVADGVNSLRDGKRSFIIV------THYQRILDYIKPDYV  216 (248)
T ss_pred             HHHHHHHHHHHhCCCEEEEE------eCCHHHHHhhhCCEE
Confidence            999999988876 8999999      9999988877 7873

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.6e-28  Score=197.89  Aligned_cols=157  Identities=16%  Similarity=0.207  Sum_probs=112.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchh----hccCCceeeEEEeecC-Cccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGE----IRQGGQRVGFEVVTLD-DRRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~----~~~~~~~ig~~~q~~~-~~~~~~~~   70 (193)
                      |+|.+|++++|+||||||||||+++|+|+++     |++|+|.++|.++..    ....++.++|++|++. ...++.++
T Consensus        66 ~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en  145 (305)
T PRK14264         66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIREN  145 (305)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHH
Confidence            5789999999999999999999999999986     689999999987642    1223467999999862 11355555


Q ss_pred             ccCCCCCCC-----------CCCc-ccceeeehhhhhhhccc------------ccc------------cCCCCCEEEEe
Q 029421           71 INASSPESY-----------RWPT-VGRYKVDVASFEAIALP------------ELQ------------VGADTDLFVID  114 (193)
Q Consensus        71 ~~~~~~~~~-----------~~~~-~~~~~~~~~~l~~~~l~------------~~~------------l~~~p~llllD  114 (193)
                      +.+......           .... ........++++.+++.            .++            ++.+|++||||
T Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLD  225 (305)
T PRK14264        146 ISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMD  225 (305)
T ss_pred             HHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            443211000           0000 00011122334444331            111            88999999999


Q ss_pred             cC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          115 EV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       115 Ep-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      || +|||+.++..+.++++.++++.|||++      ||+++.+..+||++
T Consensus       226 EPtsgLD~~~~~~l~~~L~~~~~~~tiiiv------tH~~~~i~~~~d~i  269 (305)
T PRK14264        226 EPASALDPIATSKIEDLIEELAEEYTVVVV------THNMQQAARISDQT  269 (305)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhcCCEEEEE------EcCHHHHHHhcCEE
Confidence            99 699999999999999988767899999      99999999999983

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.8e-28  Score=195.03  Aligned_cols=156  Identities=12%  Similarity=0.141  Sum_probs=109.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEchh------hccCCceeeEEEeecCC-ccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGE------IRQGGQRVGFEVVTLDD-RRAPL   68 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~~-~~~~~   68 (193)
                      |+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.+...      ....++.++|++|++.. ..+..
T Consensus        37 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~  116 (265)
T PRK14252         37 MMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIF  116 (265)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHH
Confidence            57899999999999999999999999999875     79999999876421      11235679999997621 12445


Q ss_pred             ccccCCCCCCCCCCc-ccceeeehhhhhhhcc------------cccc------------cCCCCCEEEEecC-CCcccc
Q 029421           69 ASINASSPESYRWPT-VGRYKVDVASFEAIAL------------PELQ------------VGADTDLFVIDEV-GKMELF  122 (193)
Q Consensus        69 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l------------~~~~------------l~~~p~llllDEp-~~LD~~  122 (193)
                      +++.+..... .... ........+.++.+++            ..++            ++.+|+++||||| ++||+.
T Consensus       117 eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~  195 (265)
T PRK14252        117 ENVAYGLRIR-GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI  195 (265)
T ss_pred             HHHHhHHHHc-CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence            5543321100 0000 0000111222232222            1111            7899999999999 699999


Q ss_pred             ccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          123 SSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       123 ~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++..+.++++.++++.|||++      ||+++++.++||++
T Consensus       196 ~~~~l~~~l~~l~~~~tiiiv------th~~~~~~~~~d~i  230 (265)
T PRK14252        196 ATASIEELISDLKNKVTILIV------THNMQQAARVSDYT  230 (265)
T ss_pred             HHHHHHHHHHHHHhCCEEEEE------ecCHHHHHHhCCEE
Confidence            999999999988668899999      99999999999984

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.95  E-value=3.1e-28  Score=191.73  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=103.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+....   ....++.     +..++.+++.+.... ..
T Consensus        43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---~~~~~~~-----~~~tv~enl~~~~~~-~~  113 (224)
T cd03220          43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---GLGGGFN-----PELTGRENIYLNGRL-LG  113 (224)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh---cccccCC-----CCCcHHHHHHHHHHH-cC
Confidence            67899999999999999999999999999999999999999875311   1111221     123444443221110 00


Q ss_pred             CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CC
Q 029421           81 WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NI  138 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~  138 (193)
                      ...........+.++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++ |.
T Consensus       114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~  193 (224)
T cd03220         114 LSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK  193 (224)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence            0000001112233444444321        1            7899999999999 69999999999999988765 89


Q ss_pred             cEEEEecCCCCCCChhHHHHHhcCC
Q 029421          139 PVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       139 tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |||++      ||+.+++..+||++
T Consensus       194 tiii~------sH~~~~~~~~~d~i  212 (224)
T cd03220         194 TVILV------SHDPSSIKRLCDRA  212 (224)
T ss_pred             EEEEE------eCCHHHHHHhCCEE
Confidence            99999      99999999999983

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.95  E-value=1.4e-27  Score=187.05  Aligned_cols=147  Identities=14%  Similarity=0.211  Sum_probs=105.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeecC-CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTLD-DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~~-~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...      ...++.++|++|++. ...+..+++.+
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~  101 (218)
T cd03290          22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF  101 (218)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhh
Confidence            57899999999999999999999999999999999999999875321      122456999999862 12344555433


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhc-------------------ccccc------------cCCCCCEEEEecC-CCccc
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIA-------------------LPELQ------------VGADTDLFVIDEV-GKMEL  121 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~-------------------l~~~~------------l~~~p~llllDEp-~~LD~  121 (193)
                      ....    .. ..   ..+.++.++                   ...++            ++.+|+++||||| ++||+
T Consensus       102 ~~~~----~~-~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~  173 (218)
T cd03290         102 GSPF----NK-QR---YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI  173 (218)
T ss_pred             cCcC----CH-HH---HHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCH
Confidence            2110    00 00   001111111                   11122            8899999999999 69999


Q ss_pred             cccchHHH--HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          122 FSSSFFPA--VLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       122 ~~~~~~~~--ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .++..+.+  +++.+++ |.|+|++      ||+.+.+. .||+
T Consensus       174 ~~~~~l~~~~ll~~~~~~~~tii~~------sH~~~~~~-~~d~  210 (218)
T cd03290         174 HLSDHLMQEGILKFLQDDKRTLVLV------THKLQYLP-HADW  210 (218)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEE------eCChHHHh-hCCE
Confidence            99887776  7777766 8999999      99998774 5776

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-27  Score=198.15  Aligned_cols=156  Identities=13%  Similarity=0.194  Sum_probs=113.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCeEEeceEchhh----ccCCceeeEEEeecCC-ccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK-----ASNPSLKVQGFYTGEI----RQGGQRVGFEVVTLDD-RRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-----~~~G~i~~~g~~~~~~----~~~~~~ig~~~q~~~~-~~~~~~~   70 (193)
                      |+|++|++++|+||||||||||+++|+|+.+     |++|+|.++|.++...    ...+..++|+||++.. ..+..+|
T Consensus       103 ~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eN  182 (329)
T PRK14257        103 LDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDN  182 (329)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHH
Confidence            5799999999999999999999999999986     5799999999987421    2345679999998732 2455566


Q ss_pred             ccCCCCCCCCCCcccc-eeeehhhhhhhccc------------ccc------------cCCCCCEEEEecC-CCcccccc
Q 029421           71 INASSPESYRWPTVGR-YKVDVASFEAIALP------------ELQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~------------~~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      +.+... ......... .....+.++.+++.            .++            ++.+|+++||||| ++||+.+.
T Consensus       183 i~~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~  261 (329)
T PRK14257        183 VAYGPR-NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT  261 (329)
T ss_pred             HHhHHH-hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence            543211 000000000 00112223333321            111            7899999999999 69999999


Q ss_pred             chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+.+.++.+.+++|||++      ||+++.+.++||++
T Consensus       262 ~~i~~~i~~l~~~~Tii~i------TH~l~~i~~~~Dri  294 (329)
T PRK14257        262 AKIEELILELKKKYSIIIV------THSMAQAQRISDET  294 (329)
T ss_pred             HHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            8899999888778999999      99999999999994

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.94  E-value=1.8e-27  Score=212.32  Aligned_cols=179  Identities=13%  Similarity=0.165  Sum_probs=126.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.+...  ....|+++||++|++.. ..+..+|+.+..+.
T Consensus       494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~  573 (709)
T COG2274         494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE  573 (709)
T ss_pred             EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC
Confidence            5799999999999999999999999999999999999999999854  34567899999998732 34566676554332


Q ss_pred             CCCCCcc---cceeeehhhhhhh--ccc--------cc------------ccCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTV---GRYKVDVASFEAI--ALP--------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~---~~~~~~~~~l~~~--~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. ....   ....-..+....+  |..        .+            ++..+|++|||||| ++||+.+.+.+.+-+
T Consensus       574 ~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L  652 (709)
T COG2274         574 AT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL  652 (709)
T ss_pred             CC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH
Confidence            11 0000   0000011111111  110        01            18899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCc--EEEEeCCCChhHHHHHHHHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHPGA--TIFTLSPGNRDSLKDNIYYQLTD  188 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~--~~~~~~~~~~~~l~~~~~~~~~~  188 (193)
                      ..+..|+|+|++      +|+...+ +.||++-+  ....+..++.+++.+. ...+.+
T Consensus       653 ~~~~~~~T~I~I------aHRl~ti-~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~  703 (709)
T COG2274         653 LQILQGRTVIII------AHRLSTI-RSADRIIVLDQGKIVEQGSHEELLAQ-GGLYAR  703 (709)
T ss_pred             HHHhcCCeEEEE------EccchHh-hhccEEEEccCCceeccCCHHHHHHh-cChHHH
Confidence            998889999999      9998766 46888421  1225566777777776 333333

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.94  E-value=2.3e-27  Score=191.86  Aligned_cols=162  Identities=15%  Similarity=0.205  Sum_probs=114.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...  ...+++++|+||++..+ .+..+|+....  
T Consensus        25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~--  101 (275)
T cd03289          25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG--  101 (275)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhcc--
Confidence            5789999999999999999999999999998 789999999987432  23356899999987321 24445542110  


Q ss_pred             CCCCCcccceeeehhhhhhhcccc-------------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE-------------------LQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                        ....    ....+.++.+++..                   ++            ++.+|+++||||| ++||+.++.
T Consensus       102 --~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~  175 (275)
T cd03289         102 --KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ  175 (275)
T ss_pred             --CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence              0000    11122223333211                   22            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.++++.+..++|||++      ||+++.+.. ||++    ++.+.  ..+..+++.+
T Consensus       176 ~l~~~l~~~~~~~tii~i------sH~~~~i~~-~dri~vl~~G~i~--~~g~~~~l~~  225 (275)
T cd03289         176 VIRKTLKQAFADCTVILS------EHRIEAMLE-CQRFLVIEENKVR--QYDSIQKLLN  225 (275)
T ss_pred             HHHHHHHHhcCCCEEEEE------ECCHHHHHh-CCEEEEecCCeEe--ecCCHHHHhh
Confidence            999999887668999999      999988764 8984    23333  3345555554

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.94  E-value=3.3e-27  Score=173.87  Aligned_cols=116  Identities=17%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      |++++||+++|+||||||||||+++|+|+++|++|+|.++|.         ..++|++|             +    .. 
T Consensus        21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~~-------------l----S~-   73 (144)
T cd03221          21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---------VKIGYFEQ-------------L----SG-   73 (144)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------EEEEEEcc-------------C----CH-
Confidence            578999999999999999999999999999999999999883         36788876             0    00 


Q ss_pred             CCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHH
Q 029421           81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARL  159 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~  159 (193)
                                 -..+++.+ ...++.+|+++++||| ++||+.++..+.++++.+  +.|+|++      ||+.+++..+
T Consensus        74 -----------G~~~rv~l-aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~------th~~~~~~~~  133 (144)
T cd03221          74 -----------GEKMRLAL-AKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILV------SHDRYFLDQV  133 (144)
T ss_pred             -----------HHHHHHHH-HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEE------ECCHHHHHHh
Confidence                       00111121 1236789999999999 699999998888888776  4799999      9999999999


Q ss_pred             hcCC
Q 029421          160 RNHP  163 (193)
Q Consensus       160 ~d~~  163 (193)
                      ||++
T Consensus       134 ~d~v  137 (144)
T cd03221         134 ATKI  137 (144)
T ss_pred             CCEE
Confidence            9884

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=3.2e-27  Score=183.58  Aligned_cols=171  Identities=18%  Similarity=0.168  Sum_probs=116.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      |++.+||.+||+|+||||||||+|+|+|.++|++|+|.++|+..+-.   .-..||.|     ..+..+|+.+... ...
T Consensus        48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li---~lg~Gf~p-----elTGreNi~l~~~-~~G  118 (249)
T COG1134          48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLI---ELGAGFDP-----ELTGRENIYLRGL-ILG  118 (249)
T ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhh---hcccCCCc-----ccchHHHHHHHHH-HhC
Confidence            68999999999999999999999999999999999999999765322   12344443     3555555433211 111


Q ss_pred             CCcccceeeehhhhh---------------------hhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHh-CC
Q 029421           81 WPTVGRYKVDVASFE---------------------AIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-SN  137 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~---------------------~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~g  137 (193)
                      ....+......+..+                     +++++ .+...+|++||+||. +--|+.-++...+.+..+. ++
T Consensus       119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFs-ia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~  197 (249)
T COG1134         119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFS-VATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN  197 (249)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHh-hhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC
Confidence            111111111111111                     11111 126689999999999 8889988888888888874 49


Q ss_pred             CcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHHHHHH
Q 029421          138 IPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQLTDA  189 (193)
Q Consensus       138 ~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~~~~~  189 (193)
                      .|+|+|      |||++.+.++||+.    +|.+...  ++.+++.+.+.......
T Consensus       198 ~tiv~V------SHd~~~I~~~Cd~~i~l~~G~i~~~--G~~~~vi~~Y~~~~~~~  245 (249)
T COG1134         198 KTIVLV------SHDLGAIKQYCDRAIWLEHGQIRME--GSPEEVIPAYEEDLADR  245 (249)
T ss_pred             CEEEEE------ECCHHHHHHhcCeeEEEeCCEEEEc--CCHHHHHHHHHHhhhhh
Confidence            999999      99999999999993    3444333  46666776666655443

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=6.6e-28  Score=181.59  Aligned_cols=173  Identities=16%  Similarity=0.196  Sum_probs=129.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec-eEchhh---ccCCceeeEEEeec--CCcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG-FYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g-~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~   74 (193)
                      |++.+||.-+|+|||||||||+|-.|+|-.+|+.|+++++| .++...   ...+..||-=||.|  +...++++|+.+.
T Consensus        26 ~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA  105 (249)
T COG4674          26 FSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELA  105 (249)
T ss_pred             EEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHH
Confidence            67899999999999999999999999999999999999999 665433   33355677667876  5567888887665


Q ss_pred             CCCCCCC-------Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccch
Q 029421           75 SPESYRW-------PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        75 ~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      ......+       .......+..+.+...++.+..                    ++++|++|++||| +||--.....
T Consensus       106 ~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~  185 (249)
T COG4674         106 LNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK  185 (249)
T ss_pred             hcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHH
Confidence            4322111       1112223455667766665432                    7899999999999 7998888888


Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEE--EEeCCCChhHHH
Q 029421          127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATI--FTLSPGNRDSLK  179 (193)
Q Consensus       127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~--~~~~~~~~~~l~  179 (193)
                      .-++++.++...+|+++      .||+.++.++|+++.+.-  -++..++.++++
T Consensus       186 taeLl~~la~~hsilVV------EHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~  234 (249)
T COG4674         186 TAELLKSLAGKHSILVV------EHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ  234 (249)
T ss_pred             HHHHHHHHhcCceEEEE------eccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence            99999999988999999      999999999999853221  144555555544

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.94  E-value=2.4e-27  Score=189.93  Aligned_cols=149  Identities=17%  Similarity=0.192  Sum_probs=106.5

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE-----------EeceEchhhc----cCCceeeEEEeecCCcc-c
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK-----------VQGFYTGEIR----QGGQRVGFEVVTLDDRR-A   66 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~-----------~~g~~~~~~~----~~~~~ig~~~q~~~~~~-~   66 (193)
                      +.+|++++|+||||||||||+++|+|+++|++|+|+           ++|.+.....    .....++|++|.+.... .
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  102 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKA  102 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchH
Confidence            689999999999999999999999999999999996           6777653221    11224678877652111 1


Q ss_pred             ccccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccc
Q 029421           67 PLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      ...++....      ..........+.++.+++....                    ++.+|+++|+||| ++||+.++.
T Consensus       103 ~~~~i~~~l------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~  176 (255)
T cd03236         103 VKGKVGELL------KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL  176 (255)
T ss_pred             HHHHHHHHh------chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence            111111100      0001112234555555554321                    7889999999999 699999999


Q ss_pred             hHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+++ |+|||++      |||++.+.++||++
T Consensus       177 ~l~~~l~~l~~~~~tIIii------SHd~~~~~~~ad~i  209 (255)
T cd03236         177 NAARLIRELAEDDNYVLVV------EHDLAVLDYLSDYI  209 (255)
T ss_pred             HHHHHHHHHHhcCCEEEEE------ECCHHHHHHhCCEE
Confidence            99999998876 8999999      99999999999983

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.94  E-value=1.1e-26  Score=205.01  Aligned_cols=140  Identities=15%  Similarity=0.244  Sum_probs=107.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|.+||+++|+||||||||||+|+|+|+++|++|+|.++           .+++|+||++.  ...++.+++..... .
T Consensus       360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~-~  427 (590)
T PRK13409        360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-----------LKISYKPQYIKPDYDGTVEDLLRSITD-D  427 (590)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----------eeEEEecccccCCCCCcHHHHHHHHhh-h
Confidence            5689999999999999999999999999999999999875           15899999763  23344444332110 0


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-  136 (193)
                        ..   ......++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+.+ 
T Consensus       428 --~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~  502 (590)
T PRK13409        428 --LG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE  502 (590)
T ss_pred             --cC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence              00   01123355666665432        1            7899999999999 69999999999999998853 


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      |||+.++..+||++
T Consensus       503 ~g~tviiv------sHD~~~~~~~aDrv  524 (590)
T PRK13409        503 REATALVV------DHDIYMIDYISDRL  524 (590)
T ss_pred             CCCEEEEE------eCCHHHHHHhCCEE
Confidence             8999999      99999999999983

>PLN03211 ABC transporter G-25; Provisional

Probab=99.94  E-value=3.4e-27  Score=210.67  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=116.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC--CCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS--NPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~--~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~   76 (193)
                      +++++||+++|+||||||||||+++|+|.++|+  +|+|.++|++...  ...+++||++|+.  .+..++.+++.+...
T Consensus        89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~  166 (659)
T PLN03211         89 GMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK--QILKRTGFVTQDDILYPHLTVRETLVFCSL  166 (659)
T ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch--hhccceEEECcccccCCcCCHHHHHHHHHH
Confidence            468999999999999999999999999999885  8999999988642  2235699999986  334566666544211


Q ss_pred             CCC--CCCcccceeeehhhhhhhcccc-------------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           77 ESY--RWPTVGRYKVDVASFEAIALPE-------------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        77 ~~~--~~~~~~~~~~~~~~l~~~~l~~-------------~~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ...  ............+.++.+++.+             ++            ++.+|++++|||| +|||+.++..+.
T Consensus       167 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~  246 (659)
T PLN03211        167 LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLV  246 (659)
T ss_pred             hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHH
Confidence            100  0011111123345566666632             22            7899999999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChh-HHHHHhcCC
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIP-AVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~-~~~~~~d~~  163 (193)
                      ++++.+++ |.|||++      +|+++ .+.+++|++
T Consensus       247 ~~L~~l~~~g~TvI~~------sH~~~~~i~~~~D~i  277 (659)
T PLN03211        247 LTLGSLAQKGKTIVTS------MHQPSSRVYQMFDSV  277 (659)
T ss_pred             HHHHHHHhCCCEEEEE------ecCCCHHHHHhhceE
Confidence            99999876 9999999      99987 578899984

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.94  E-value=1.5e-26  Score=172.58  Aligned_cols=127  Identities=22%  Similarity=0.311  Sum_probs=100.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~   78 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.....  .......++|++|             +    .
T Consensus        20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------------l----S   82 (157)
T cd00267          20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------------L----S   82 (157)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-------------C----C
Confidence            5789999999999999999999999999999999999999987642  1223456888887             0    0


Q ss_pred             CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHH
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~  156 (193)
                      .     +.       .+++.+ ...++.+|+++++||| ++||+.++..+.+++..+.+ +.|++++      ||+..++
T Consensus        83 ~-----G~-------~~r~~l-~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~------sh~~~~~  143 (157)
T cd00267          83 G-----GQ-------RQRVAL-ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV------THDPELA  143 (157)
T ss_pred             H-----HH-------HHHHHH-HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE------eCCHHHH
Confidence            0     00       011111 1125678999999999 69999999999999988766 7899999      9999999


Q ss_pred             HHHhcCC
Q 029421          157 ARLRNHP  163 (193)
Q Consensus       157 ~~~~d~~  163 (193)
                      ..+||++
T Consensus       144 ~~~~d~i  150 (157)
T cd00267         144 ELAADRV  150 (157)
T ss_pred             HHhCCEE
Confidence            9988873

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.94  E-value=1e-26  Score=200.04  Aligned_cols=165  Identities=12%  Similarity=0.127  Sum_probs=111.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|....        +++.+ ...+..++.+++.+.... ..
T Consensus        45 fsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~--------i~~~~-~l~~~lTV~EnL~l~~~~-~~  114 (549)
T PRK13545         45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL--------IAISS-GLNGQLTGIENIELKGLM-MG  114 (549)
T ss_pred             EEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee--------EEecc-ccCCCCcHHHHHHhhhhh-cC
Confidence            578999999999999999999999999999999999999986521        11111 112234455554321110 01


Q ss_pred             CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CC
Q 029421           81 WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NI  138 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~  138 (193)
                      ...........++++.+++...        +            ++.+|+++||||| ++||+.++..+.++++.+++ |.
T Consensus       115 ~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~  194 (549)
T PRK13545        115 LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGK  194 (549)
T ss_pred             CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCC
Confidence            1111111112234444444321        1            7899999999999 69999999999999988866 89


Q ss_pred             cEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHH
Q 029421          139 PVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIY  183 (193)
Q Consensus       139 tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~  183 (193)
                      |||++      |||++++.++||++    ++.+..  .+..+++..++.
T Consensus       195 TIIIV------SHdl~~i~~l~DrIivL~~GkIv~--~G~~~el~~~~~  235 (549)
T PRK13545        195 TIFFI------SHSLSQVKSFCTKALWLHYGQVKE--YGDIKEVVDHYD  235 (549)
T ss_pred             EEEEE------ECCHHHHHHhCCEEEEEECCEEEE--ECCHHHHHhhHH
Confidence            99999      99999999999984    344332  244555555543

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=5.8e-27  Score=185.16  Aligned_cols=139  Identities=17%  Similarity=0.234  Sum_probs=101.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccC--C-------ceeeEEEeecCCcccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQG--G-------QRVGFEVVTLDDRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~--~-------~~ig~~~q~~~~~~~~~~~~   71 (193)
                      |+|++||+++|+|+||||||||-|+|+|+++|++|+|.++|+++......  .       ..+|. +++.      .  .
T Consensus        34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl-~~~~------~--~  104 (268)
T COG4608          34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGL-PEEF------L--Y  104 (268)
T ss_pred             EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCC-CHHH------h--h
Confidence            68999999999999999999999999999999999999999886432210  0       11120 0000      0  0


Q ss_pred             cCCCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCC
Q 029421           72 NASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPK  148 (193)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~  148 (193)
                      .++..-..            --.+++++. .+++.+|+++++||| ++||...+.++.+++..+++  |.|.+++     
T Consensus       105 ryPhelSG------------GQrQRi~IA-RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI-----  166 (268)
T COG4608         105 RYPHELSG------------GQRQRIGIA-RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI-----  166 (268)
T ss_pred             cCCcccCc------------hhhhhHHHH-HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE-----
Confidence            01100000            011222221 236789999999999 79999999999999999875  9999999     


Q ss_pred             CCCChhHHHHHhcCCCcEE
Q 029421          149 SGRDIPAVARLRNHPGATI  167 (193)
Q Consensus       149 ~tHd~~~~~~~~d~~~~~~  167 (193)
                       |||+..+..+||++.+..
T Consensus       167 -sHDL~vv~~isdri~VMy  184 (268)
T COG4608         167 -SHDLSVVRYISDRIAVMY  184 (268)
T ss_pred             -EEEHHhhhhhcccEEEEe
Confidence             999999999999965443

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.94  E-value=7.4e-27  Score=207.03  Aligned_cols=162  Identities=12%  Similarity=0.157  Sum_probs=117.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++...  ...+++++|++|++.-+ .+..+|+.+... 
T Consensus       362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~-  440 (592)
T PRK10790        362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD-  440 (592)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCC-
Confidence            57899999999999999999999999999999999999999987543  34568899999998322 355666554321 


Q ss_pred             CCCCCcccceeeehhhhhhhccc-----------c--------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-----------E--------LQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-----------~--------~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .   .    .....+.++..++.           .        ++            ++.+|+++||||| ++||+.+..
T Consensus       441 ~---~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~  513 (592)
T PRK10790        441 I---S----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ  513 (592)
T ss_pred             C---C----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence            0   0    00111222222111           0        11            7899999999999 699999998


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLK  179 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~  179 (193)
                      .+.+.++.+.+++|+|++      ||++..+. .||++    +|.+.  ..++.+++.
T Consensus       514 ~i~~~l~~~~~~~tvIiv------tHr~~~l~-~~D~ii~l~~G~i~--~~G~~~~L~  562 (592)
T PRK10790        514 AIQQALAAVREHTTLVVI------AHRLSTIV-EADTILVLHRGQAV--EQGTHQQLL  562 (592)
T ss_pred             HHHHHHHHHhCCCEEEEE------ecchHHHH-hCCEEEEEECCEEE--EEcCHHHHH
Confidence            888888887778999999      99987655 58883    34443  334555554

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.94  E-value=6.8e-27  Score=206.84  Aligned_cols=171  Identities=16%  Similarity=0.217  Sum_probs=117.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+....  ...++.++|+||++.- ..+..+|+.+....
T Consensus       364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~  443 (582)
T PRK11176        364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE  443 (582)
T ss_pred             EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999987543  2346789999999732 23556666543211


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      ........   ......+.++.+  |+.        .++            ++.+|+++||||| ++||+.+...+.+.+
T Consensus       444 ~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l  523 (582)
T PRK11176        444 QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL  523 (582)
T ss_pred             CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH
Confidence            00000000   000001111111  111        111            7899999999999 699999998888888


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      ..+.+++|+|++      ||+...+ +.||++    ++.+.  ..++.+++.+
T Consensus       524 ~~~~~~~tvI~V------tHr~~~~-~~~D~Ii~l~~g~i~--e~g~~~~l~~  567 (582)
T PRK11176        524 DELQKNRTSLVI------AHRLSTI-EKADEILVVEDGEIV--ERGTHAELLA  567 (582)
T ss_pred             HHHhCCCEEEEE------ecchHHH-HhCCEEEEEECCEEE--EeCCHHHHHh
Confidence            887778999999      9998655 468984    23333  3445555554

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.4e-26  Score=201.39  Aligned_cols=146  Identities=17%  Similarity=0.256  Sum_probs=105.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.         ..+||++|++.  ...++.+++.+.....
T Consensus        22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~   92 (530)
T PRK15064         22 VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---------ERLGKLRQDQFAFEEFTVLDTVIMGHTEL   92 (530)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------CEEEEEeccCCcCCCCcHHHHHHHhhHHH
Confidence            678999999999999999999999999999999999999862         35899999752  2234444332211000


Q ss_pred             ----------CCCC---------------------cccceeeehhhhhhhcccc---------cc------------cCC
Q 029421           79 ----------YRWP---------------------TVGRYKVDVASFEAIALPE---------LQ------------VGA  106 (193)
Q Consensus        79 ----------~~~~---------------------~~~~~~~~~~~l~~~~l~~---------~~------------l~~  106 (193)
                                ....                     .........+.++.+++..         ++            ++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~  172 (530)
T PRK15064         93 WEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS  172 (530)
T ss_pred             HHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence                      0000                     0000112334555566532         11            789


Q ss_pred             CCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          107 DTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +|++|||||| ++||+.++..+.++++.  .|.|||++      |||.+.+.++||++
T Consensus       173 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiiv------sHd~~~~~~~~d~i  222 (530)
T PRK15064        173 NPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIII------SHDRHFLNSVCTHM  222 (530)
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEE------eCCHHHHHhhcceE
Confidence            9999999999 69999999888888753  38999999      99999999999983

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.93  E-value=1.1e-26  Score=205.63  Aligned_cols=169  Identities=17%  Similarity=0.227  Sum_probs=118.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+++|+|++ |++|+|.++|.++.+.  ...++.++|++|++.- ..+..+|+.+..+.
T Consensus       371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~  449 (588)
T PRK11174        371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD  449 (588)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC
Confidence            578999999999999999999999999999 9999999999987543  3446789999999832 24666776554221


Q ss_pred             CCCCCccc---ceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. .....   +.....+..+.+  |+..        ++            ++.+|+++||||| ++||+.+...+.+.+
T Consensus       450 ~~-~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l  528 (588)
T PRK11174        450 AS-DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL  528 (588)
T ss_pred             CC-HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            10 00000   000001111111  1111        11            8899999999999 699999998888888


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      ..+.+++|+|++      ||+++.+. .||++    +|.+  +..++.+++.+
T Consensus       529 ~~~~~~~TvIiI------tHrl~~i~-~aD~Iivl~~G~i--~e~G~~~eL~~  572 (588)
T PRK11174        529 NAASRRQTTLMV------THQLEDLA-QWDQIWVMQDGQI--VQQGDYAELSQ  572 (588)
T ss_pred             HHHhCCCEEEEE------ecChHHHH-hCCEEEEEeCCeE--eecCCHHHHHh
Confidence            887778999999      99987664 58883    2333  34566666654

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.93  E-value=1e-26  Score=209.46  Aligned_cols=172  Identities=16%  Similarity=0.185  Sum_probs=120.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.. ..+..+|+.+....
T Consensus       486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~  565 (694)
T TIGR03375       486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY  565 (694)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC
Confidence            57899999999999999999999999999999999999999987543  3456789999998732 23566676543221


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . ......   +.....+.++.+  |+.        .++            ++.+|+++||||| ++||+.+...+.+.+
T Consensus       566 ~-~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l  644 (694)
T TIGR03375       566 A-DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL  644 (694)
T ss_pred             C-CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            0 000000   000001111111  111        111            7899999999999 699999999999888


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~  182 (193)
                      ..+.+++|+|++      ||+++.+ +.||++    +|.+  +..++.+++.++.
T Consensus       645 ~~~~~~~T~iiI------tHrl~~~-~~~D~iivl~~G~i--~e~G~~~eLl~~~  690 (694)
T TIGR03375       645 KRWLAGKTLVLV------THRTSLL-DLVDRIIVMDNGRI--VADGPKDQVLEAL  690 (694)
T ss_pred             HHHhCCCEEEEE------ecCHHHH-HhCCEEEEEeCCEE--EeeCCHHHHHHHh
Confidence            888778999999      9998766 578883    2333  3445677776654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.93  E-value=9.1e-27  Score=202.31  Aligned_cols=156  Identities=15%  Similarity=0.243  Sum_probs=109.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEchh---hccCCceeeEEEeecCC--c--cccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGE---IRQGGQRVGFEVVTLDD--R--RAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~~~--~--~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+|+|+|+.++ ++|+|.++|++...   ....++.+||++|++..  .  .+..+...
T Consensus       281 l~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~  360 (490)
T PRK10938        281 WQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVIL  360 (490)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHH
Confidence            57899999999999999999999999998876 69999999976421   11234679999997521  1  11111111


Q ss_pred             CCCCC---CCCCCcccceeeehhhhhhhcccc-cc--------------------cCCCCCEEEEecC-CCccccccchH
Q 029421           73 ASSPE---SYRWPTVGRYKVDVASFEAIALPE-LQ--------------------VGADTDLFVIDEV-GKMELFSSSFF  127 (193)
Q Consensus        73 ~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~-~~--------------------l~~~p~llllDEp-~~LD~~~~~~~  127 (193)
                      .....   ..............+.++.+++.. ..                    ++.+|+++||||| +|||+.++..+
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l  440 (490)
T PRK10938        361 SGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLV  440 (490)
T ss_pred             hccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence            11000   000000111123445666777654 21                    8899999999999 69999999999


Q ss_pred             HHHHHHHhC-C-CcEEEEecCCCCCCChhHHHH-HhcC
Q 029421          128 PAVLRILES-N-IPVLASIPAPKSGRDIPAVAR-LRNH  162 (193)
Q Consensus       128 ~~ll~~l~~-g-~tvl~~~~~~~~tHd~~~~~~-~~d~  162 (193)
                      .++++.+++ + .|||++      |||++++.+ +||+
T Consensus       441 ~~~L~~l~~~~~~tviiv------sHd~~~~~~~~~d~  472 (490)
T PRK10938        441 RRFVDVLISEGETQLLFV------SHHAEDAPACITHR  472 (490)
T ss_pred             HHHHHHHHhcCCcEEEEE------ecchhhhhhhhhee
Confidence            999998865 5 569999      999999987 5787

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.5e-26  Score=208.12  Aligned_cols=161  Identities=14%  Similarity=0.225  Sum_probs=115.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+|+|+|+++|++|+|.+||.++.+.  ...++.+||++|++.- ..+..+|+.+... 
T Consensus       474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-  552 (686)
T TIGR03797       474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-  552 (686)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-
Confidence            57899999999999999999999999999999999999999997533  3456789999999832 2355666654321 


Q ss_pred             CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .   .    .+...+.++..++.                   .++            ++.+|+++||||| ++||+.+.+
T Consensus       553 ~---~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~  625 (686)
T TIGR03797       553 L---T----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA  625 (686)
T ss_pred             C---C----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence            0   0    00111112211111                   111            8899999999999 699999988


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.+.++.+  ++|+|++      ||+++.+. .||++    +|.++  ..++.+++.+
T Consensus       626 ~i~~~L~~~--~~T~IiI------tHr~~~i~-~~D~Iivl~~G~iv--~~G~~~~Ll~  673 (686)
T TIGR03797       626 IVSESLERL--KVTRIVI------AHRLSTIR-NADRIYVLDAGRVV--QQGTYDELMA  673 (686)
T ss_pred             HHHHHHHHh--CCeEEEE------ecChHHHH-cCCEEEEEECCEEE--EECCHHHHHh
Confidence            887777665  6899999      99987765 58884    34433  3456666654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.93  E-value=9.1e-27  Score=181.05  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=112.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hh-ccCCceeeEEEeecC----CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EI-RQGGQRVGFEVVTLD----DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~-~~~~~~ig~~~q~~~----~~~~~~~~~~~   73 (193)
                      ++|++||..+|+||||||||||+++++|..+|++|.+.+.|+...  .. .+.+++||++.....    ...++.+.+.-
T Consensus        52 W~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlS  131 (257)
T COG1119          52 WQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLS  131 (257)
T ss_pred             eeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeee
Confidence            579999999999999999999999999999999999999998863  22 556788999865431    11222222111


Q ss_pred             CCCCCCCC----Ccccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           74 SSPESYRW----PTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        74 ~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ........    ........+..+++.+++.++.                    ++.+|++|||||| +|||..+++.+.
T Consensus       132 g~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll  211 (257)
T COG1119         132 GFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL  211 (257)
T ss_pred             cccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence            11111111    1112223445566777765442                    8899999999999 799999998888


Q ss_pred             HHHHHHhC---CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          129 AVLRILES---NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       129 ~ll~~l~~---g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.+..+..   +.++|+|      ||..+++....++
T Consensus       212 ~~l~~~~~~~~~~~ll~V------tHh~eEi~~~~th  242 (257)
T COG1119         212 NRLEELAASPGAPALLFV------THHAEEIPPCFTH  242 (257)
T ss_pred             HHHHHHhcCCCCceEEEE------Ecchhhcccccce
Confidence            88887753   7899999      9998888776665

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.93  E-value=1.6e-26  Score=206.53  Aligned_cols=154  Identities=16%  Similarity=0.182  Sum_probs=114.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeecC--Cccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTLD--DRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~~--~~~~~~~~~~   72 (193)
                      |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++....      ..++.++|++|++.  +..+..+++.
T Consensus        29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~  108 (648)
T PRK10535         29 LDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVE  108 (648)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHH
Confidence            578999999999999999999999999999999999999999864321      12467999999873  2234455543


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +... ..............+.++.+++.+..                    ++.+|+++|+||| ++||+.+++.+.+++
T Consensus       109 ~~~~-~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll  187 (648)
T PRK10535        109 VPAV-YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAIL  187 (648)
T ss_pred             HHHH-HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            3111 00111111122334556666654321                    8899999999999 699999999999999


Q ss_pred             HHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          132 RILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.+++ |.|+|++      ||+.+.+. .||+
T Consensus       188 ~~l~~~g~tiliv------sH~~~~~~-~~d~  212 (648)
T PRK10535        188 HQLRDRGHTVIIV------THDPQVAA-QAER  212 (648)
T ss_pred             HHHHhcCCEEEEE------CCCHHHHH-hCCE
Confidence            98876 9999999      99998775 6888

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.93  E-value=2.1e-26  Score=203.94  Aligned_cols=155  Identities=15%  Similarity=0.210  Sum_probs=110.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++...  ...++.++|+||++.- ..+..+|+.+....
T Consensus       356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~  435 (588)
T PRK13657        356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD  435 (588)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999987543  2446789999999832 23556665543211


Q ss_pred             CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . .......   .....+.+..+  |+.        .++            ++.+|+++||||| ++||+.+...+.+.+
T Consensus       436 ~-~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l  514 (588)
T PRK13657        436 A-TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL  514 (588)
T ss_pred             C-CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            0 0000000   00000111111  111        111            8899999999999 699999998888888


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+.+++|+|++      ||+...+ +.||++
T Consensus       515 ~~~~~~~tvIii------tHr~~~~-~~~D~i  539 (588)
T PRK13657        515 DELMKGRTTFII------AHRLSTV-RNADRI  539 (588)
T ss_pred             HHHhcCCEEEEE------EecHHHH-HhCCEE
Confidence            877668999999      9998765 568983

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.93  E-value=7.8e-27  Score=214.18  Aligned_cols=158  Identities=13%  Similarity=0.153  Sum_probs=119.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---hccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---IRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |.|++||+.|++|+|||||||++++|.|..+|++|++.+.|.++..   ....++.+||+||..  .+.++..+.+.+-.
T Consensus       586 ~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~a  665 (885)
T KOG0059|consen  586 FAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYA  665 (885)
T ss_pred             EEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHH
Confidence            4689999999999999999999999999999999999999988743   223578899999974  33445544432211


Q ss_pred             CCCCCCCcccceeeehhhhhhhccccc--------------------ccCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPEL--------------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      . ..+.+..+..+.+...++.+++...                    +++.+|++++|||| +|+||.+|..+++++..+
T Consensus       666 r-lrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~  744 (885)
T KOG0059|consen  666 R-LRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARL  744 (885)
T ss_pred             H-HcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence            1 1111221222234445555555432                    18899999999999 799999999999999998


Q ss_pred             hC-CCcEEEEecCCCCCCChhHHHHHhcCCCc
Q 029421          135 ES-NIPVLASIPAPKSGRDIPAVARLRNHPGA  165 (193)
Q Consensus       135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~  165 (193)
                      ++ |+++|++      ||.+++++.+|+|.+.
T Consensus       745 ~k~g~aiiLT------SHsMeE~EaLCtR~aI  770 (885)
T KOG0059|consen  745 RKNGKAIILT------SHSMEEAEALCTRTAI  770 (885)
T ss_pred             HhcCCEEEEE------cCCHHHHHHHhhhhhe
Confidence            87 6799999      9999999999999543

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.93  E-value=2e-26  Score=208.08  Aligned_cols=162  Identities=14%  Similarity=0.171  Sum_probs=115.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+++|+|+++|++|+|.+||.++.+.  ...++.+||++|++.- ..+..+|+.+....
T Consensus       500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~  579 (710)
T TIGR03796       500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT  579 (710)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC
Confidence            57899999999999999999999999999999999999999998543  3457889999999732 23556665543211


Q ss_pred             CCCCCcccceeeehhhhhhhc-----------cc--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIA-----------LP--------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~-----------l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .   .   . +...+.++..+           +.        .++            ++.+|+++||||| ++||+.+..
T Consensus       580 ~---~---~-~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~  652 (710)
T TIGR03796       580 I---P---D-ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK  652 (710)
T ss_pred             C---C---H-HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHH
Confidence            0   0   0 00111111111           11        011            7899999999999 699999988


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.+.++.  .++|+|++      ||++..+. .||++    +|.++  ..++.+++.+
T Consensus       653 ~i~~~l~~--~~~T~Iii------tHrl~~i~-~~D~Iivl~~G~i~--~~G~~~~Ll~  700 (710)
T TIGR03796       653 IIDDNLRR--RGCTCIIV------AHRLSTIR-DCDEIIVLERGKVV--QRGTHEELWA  700 (710)
T ss_pred             HHHHHHHh--cCCEEEEE------ecCHHHHH-hCCEEEEEeCCEEE--EecCHHHHHH
Confidence            77777764  48999999      99987765 58983    33333  3456666654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.93  E-value=1.8e-26  Score=202.16  Aligned_cols=140  Identities=18%  Similarity=0.235  Sum_probs=104.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeecCC-cccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTLDD-RRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~   78 (193)
                      |++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++.+. ...++.++|+||++.- ..+..+|+.+..+..
T Consensus       356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~  435 (529)
T TIGR02868       356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDA  435 (529)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCC
Confidence            57899999999999999999999999999999999999999987543 3346789999999842 235667765532211


Q ss_pred             CCCCcccceeeehhhhhhhcc-----------c--------ccc------------cCCCCCEEEEecC-CCccccccch
Q 029421           79 YRWPTVGRYKVDVASFEAIAL-----------P--------ELQ------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l-----------~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      .      + +...+.++..++           .        .++            ++.+|+++||||| ++||+.+...
T Consensus       436 ~------~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~  508 (529)
T TIGR02868       436 T------D-EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESE  508 (529)
T ss_pred             C------H-HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            0      0 001111111111           1        011            8899999999999 6999999988


Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCCCCh
Q 029421          127 FPAVLRILESNIPVLASIPAPKSGRDI  153 (193)
Q Consensus       127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~  153 (193)
                      +.+.+..+.+++|+|++      ||++
T Consensus       509 I~~~l~~~~~~~TvIiI------tHrl  529 (529)
T TIGR02868       509 LLEDLLAALSGKTVVVI------THHL  529 (529)
T ss_pred             HHHHHHHhcCCCEEEEE------ecCC
Confidence            88888877678999999      8873

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.93  E-value=1.1e-25  Score=198.10  Aligned_cols=165  Identities=15%  Similarity=0.166  Sum_probs=115.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .        ..+||++|++   .+..++.+++.+....
T Consensus       343 l~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~  413 (552)
T TIGR03719       343 FKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T--------VKLAYVDQSRDALDPNKTVWEEISGGLDI  413 (552)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--------eEEEEEeCCccccCCCCcHHHHHHhhccc
Confidence            57899999999999999999999999999999999998843 1        2589999974   2334566654432211


Q ss_pred             CCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      . .....  .....+.++.+++..         ++            ++.+|+++||||| ++||+.++..+.++++.+.
T Consensus       414 ~-~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  490 (552)
T TIGR03719       414 I-QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA  490 (552)
T ss_pred             c-ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence            0 00100  111224556666532         11            8899999999999 6999999999999888774


Q ss_pred             CCCcEEEEecCCCCCCChhHHHHHhcCC----C-cEEEEeCCCChhHHHHHHHHHH
Q 029421          136 SNIPVLASIPAPKSGRDIPAVARLRNHP----G-ATIFTLSPGNRDSLKDNIYYQL  186 (193)
Q Consensus       136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~-~~~~~~~~~~~~~l~~~~~~~~  186 (193)
                        .|||++      |||++++.++||++    + +.+.. ..++.++..+......
T Consensus       491 --~~viiv------sHd~~~~~~~~d~i~~l~~~~~~~~-~~g~~~~~~~~~~~~~  537 (552)
T TIGR03719       491 --GCAVVI------SHDRWFLDRIATHILAFEGDSHVEW-FEGNYSEYEEDKKRRL  537 (552)
T ss_pred             --CeEEEE------eCCHHHHHHhCCEEEEEECCCeEEE-eCCCHHHHHHHHHHHH
Confidence              389999      99999999999983    2 23322 2345555554444333

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.93  E-value=9.1e-26  Score=183.16  Aligned_cols=145  Identities=20%  Similarity=0.244  Sum_probs=98.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |+|.+|++++|+||||||||||+++|+|+++|++|+|.++|           .++|++|++. ...+..+++.+......
T Consensus        58 ~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-----------~i~yv~q~~~l~~~tv~enl~~~~~~~~  126 (282)
T cd03291          58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-----------RISFSSQFSWIMPGTIKENIIFGVSYDE  126 (282)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------EEEEEeCcccccccCHHHHhhcccccCH
Confidence            57899999999999999999999999999999999999987           3889998762 11244455433211000


Q ss_pred             -CCCcccceeeehhhhhhhc----------ccccc------------cCCCCCEEEEecC-CCccccccchHHH-HHHHH
Q 029421           80 -RWPTVGRYKVDVASFEAIA----------LPELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA-VLRIL  134 (193)
Q Consensus        80 -~~~~~~~~~~~~~~l~~~~----------l~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~-ll~~l  134 (193)
                       ............+.+..+.          ...++            ++.+|+++||||| ++||+.++..+.+ +++.+
T Consensus       127 ~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~  206 (282)
T cd03291         127 YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL  206 (282)
T ss_pred             HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh
Confidence             0000000000011111110          01222            7899999999999 6999999887765 44566


Q ss_pred             hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.|||++      ||++..+ ..||++
T Consensus       207 ~~~~tIiii------sH~~~~~-~~~d~i  228 (282)
T cd03291         207 MANKTRILV------TSKMEHL-KKADKI  228 (282)
T ss_pred             hCCCEEEEE------eCChHHH-HhCCEE
Confidence            568999999      9999887 478883

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.2e-26  Score=196.09  Aligned_cols=149  Identities=17%  Similarity=0.232  Sum_probs=112.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+..+..  ..+++++|++|+|.- ..+..+|+.+....
T Consensus       342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~  421 (559)
T COG4988         342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD  421 (559)
T ss_pred             eEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCc
Confidence            688999999999999999999999999999999999999999875443  346889999999842 23555665543321


Q ss_pred             CCCCCcccceeeehhhhhhhc----------ccc--------c------------ccCCCCCEEEEecC-CCccccccch
Q 029421           78 SYRWPTVGRYKVDVASFEAIA----------LPE--------L------------QVGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~----------l~~--------~------------~l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      .      . .+...+++++.+          ++.        +            .+..+++++|+||| ++||.++.+.
T Consensus       422 ~------s-~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~  494 (559)
T COG4988         422 A------S-DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI  494 (559)
T ss_pred             C------C-HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHH
Confidence            0      0 011111111111          110        1            17789999999999 5999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+.+..+.+++|++++      ||++..+. -+|++
T Consensus       495 i~~~l~~l~~~ktvl~i------tHrl~~~~-~~D~I  524 (559)
T COG4988         495 ILQALQELAKQKTVLVI------THRLEDAA-DADRI  524 (559)
T ss_pred             HHHHHHHHHhCCeEEEE------EcChHHHh-cCCEE
Confidence            99999999889999999      99987665 46773

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.93  E-value=2.7e-26  Score=200.94  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=111.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.++.+.  ...++.++|++|++. ...+..+|+.+....
T Consensus       343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~  422 (529)
T TIGR02857       343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD  422 (529)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC
Confidence            57899999999999999999999999999999999999999987533  344678999999973 224566665543221


Q ss_pred             CCCC--Ccccceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           78 SYRW--PTVGRYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        78 ~~~~--~~~~~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ....  ...-+.....+.++.+  |++        .++            ++.+|++++|||| +++|+.+.+.+.+.+.
T Consensus       423 ~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~  502 (529)
T TIGR02857       423 ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR  502 (529)
T ss_pred             CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence            1000  0000000001111111  010        111            8899999999999 6999999998888888


Q ss_pred             HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+++|+|++      ||++..+ +.||++
T Consensus       503 ~~~~~~t~i~i------tH~~~~~-~~~d~i  526 (529)
T TIGR02857       503 ALAQGRTVLLV------THRLALA-ERADRI  526 (529)
T ss_pred             HhcCCCEEEEE------ecCHHHH-HhCCEE
Confidence            87678999999      9998776 468873

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.93  E-value=3e-26  Score=202.50  Aligned_cols=164  Identities=15%  Similarity=0.197  Sum_probs=118.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.  ...++.++|++|++.- ..+..+|+.+....
T Consensus       361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~  440 (574)
T PRK11160        361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN  440 (574)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc
Confidence            57899999999999999999999999999999999999999987543  2346789999998732 23555665543221


Q ss_pred             CCCCCcccceeeehhhhhhhccc------------------ccc------------cCCCCCEEEEecC-CCccccccch
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP------------------ELQ------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~------------------~~~------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      .   .    .+...+.++..++.                  .++            ++.+|+++||||| ++||+.+++.
T Consensus       441 ~---~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~  513 (574)
T PRK11160        441 A---S----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ  513 (574)
T ss_pred             c---C----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            0   0    00111112211111                  111            8899999999999 6999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      +.+.+..+.+++|+|++      ||+...+. .||++    ++.+.  ..++.+++.+
T Consensus       514 i~~~l~~~~~~~tviii------tHr~~~~~-~~d~i~~l~~G~i~--~~g~~~~l~~  562 (574)
T PRK11160        514 ILELLAEHAQNKTVLMI------THRLTGLE-QFDRICVMDNGQII--EQGTHQELLA  562 (574)
T ss_pred             HHHHHHHHcCCCEEEEE------ecChhHHH-hCCEEEEEeCCeEE--EeCCHHHHHh
Confidence            99888887778999999      99988775 48883    33333  3455555543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=5.8e-26  Score=198.97  Aligned_cols=140  Identities=16%  Similarity=0.209  Sum_probs=105.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC----CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD----DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~----~~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.         .++||++|++.    +..++.+++.... 
T Consensus       340 ~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~t~~~~~~~~~-  409 (530)
T PRK15064        340 LLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------ANIGYYAQDHAYDFENDLTLFDWMSQWR-  409 (530)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---------eEEEEEcccccccCCCCCcHHHHHHHhc-
Confidence            578999999999999999999999999999999999998762         46999999752    1233444322100 


Q ss_pred             CCCCCCcccceeeehhhhhhhccc-cc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALP-EL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~-~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                         . .. .......+.++.+++. ..        +            ++.+|++|||||| ++||+.++..+.++++.+
T Consensus       410 ---~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  484 (530)
T PRK15064        410 ---Q-EG-DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY  484 (530)
T ss_pred             ---c-CC-ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC
Confidence               0 00 0111233455555552 11        1            7899999999999 699999998888888766


Q ss_pred             hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                        +.|||++      |||.+++..+||++
T Consensus       485 --~~tvi~v------sHd~~~~~~~~d~i  505 (530)
T PRK15064        485 --EGTLIFV------SHDREFVSSLATRI  505 (530)
T ss_pred             --CCEEEEE------eCCHHHHHHhCCEE
Confidence              4599999      99999999999984

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.93  E-value=3.3e-26  Score=201.99  Aligned_cols=150  Identities=14%  Similarity=0.152  Sum_probs=110.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++...  ...++.++|+||++.- ..+..+|+.+....
T Consensus       353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~  432 (571)
T TIGR02203       353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE  432 (571)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999987533  3446789999999832 23555665443210


Q ss_pred             CCCCCcccceeeehhhhhhhcc-----------c--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIAL-----------P--------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l-----------~--------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      ..  .    .....+.++.+++           +        .++            ++.+|++++|||| ++||+.+.+
T Consensus       433 ~~--~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~  506 (571)
T TIGR02203       433 QA--D----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESER  506 (571)
T ss_pred             CC--C----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence            00  0    0011111111111           1        011            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+.+..+.+++|+|++      ||+...+ +.||++
T Consensus       507 ~i~~~L~~~~~~~tiIii------tH~~~~~-~~~D~i  537 (571)
T TIGR02203       507 LVQAALERLMQGRTTLVI------AHRLSTI-EKADRI  537 (571)
T ss_pred             HHHHHHHHHhCCCEEEEE------ehhhHHH-HhCCEE
Confidence            889888887778999999      9997654 568883

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=2.5e-26  Score=166.76  Aligned_cols=149  Identities=16%  Similarity=0.232  Sum_probs=118.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|.+||++.|+||||||||||+..+.|.+.++   +|+++++++++...+...+.+|+.||+.  ++..++.+|+.+..
T Consensus        23 ~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl  102 (213)
T COG4136          23 FTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL  102 (213)
T ss_pred             EEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEec
Confidence            589999999999999999999999999999875   7999999999877777788999999997  67778888877655


Q ss_pred             CCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH-HH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL-RI  133 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll-~~  133 (193)
                      .....-  ..+.......+++.++....                    ++..|+.++|||| +.||...+.++.+.. .+
T Consensus       103 p~~~KG--~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~  180 (213)
T COG4136         103 PATLKG--NARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSE  180 (213)
T ss_pred             Cccccc--HHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHH
Confidence            432211  11223345667777765432                    7889999999999 899999997776665 45


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHH
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVA  157 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~  157 (193)
                      +.+ |...++|      |||..++.
T Consensus       181 ~r~agiPtv~V------THD~~Dvp  199 (213)
T COG4136         181 VRAAGIPTVQV------THDLQDVP  199 (213)
T ss_pred             HHhcCCCeEEE------ecccccCC
Confidence            666 9999999      99977654

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.93  E-value=5.2e-26  Score=200.77  Aligned_cols=155  Identities=13%  Similarity=0.174  Sum_probs=109.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.- ..+..+|+.+....
T Consensus       336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~  415 (569)
T PRK10789        336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPD  415 (569)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999987432  2346779999998732 23555665443211


Q ss_pred             CCCCCcccc-ee--eehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR-YK--VDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~-~~--~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. ...... .+  ...+....+  |+.        .++            ++.+|+++||||| ++||+.++..+.+.+
T Consensus       416 ~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l  494 (569)
T PRK10789        416 AT-QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL  494 (569)
T ss_pred             CC-HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            00 000000 00  000011111  111        111            8899999999999 699999999898888


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+.+|+|+|++      ||+.+.+. .||++
T Consensus       495 ~~~~~~~tii~i------tH~~~~~~-~~d~i  519 (569)
T PRK10789        495 RQWGEGRTVIIS------AHRLSALT-EASEI  519 (569)
T ss_pred             HHHhCCCEEEEE------ecchhHHH-cCCEE
Confidence            887679999999      99987664 58883

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=6.3e-26  Score=169.63  Aligned_cols=157  Identities=11%  Similarity=0.162  Sum_probs=119.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hhccCCceeeEEEeecCCccccccc----ccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EIRQGGQRVGFEVVTLDDRRAPLAS----INAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~~~~~~~ig~~~q~~~~~~~~~~~----~~~~   74 (193)
                      |++++|+.++++|.||||||||.|+|+|+++|++|+|.+||....  ......++|-++||+++...++.-+    +..+
T Consensus        34 FtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~P  113 (267)
T COG4167          34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFP  113 (267)
T ss_pred             EEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcch
Confidence            678999999999999999999999999999999999999998863  2333457788999998543333322    2222


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccc-c--------------------ccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPE-L--------------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--------------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ......+....+.+++.+.+..+|+-. .                    +|..+|+++|.||. ++||...+.++.+++-
T Consensus       114 L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L  193 (267)
T COG4167         114 LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLML  193 (267)
T ss_pred             hhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence            222222333333344555666666531 1                    17889999999999 8999999988888888


Q ss_pred             HHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+  |.+.|.|      ++++..+..++|.+
T Consensus       194 eLQek~GiSyiYV------~QhlG~iKHi~D~v  220 (267)
T COG4167         194 ELQEKQGISYIYV------TQHIGMIKHISDQV  220 (267)
T ss_pred             HHHHHhCceEEEE------echhhHhhhhcccE
Confidence            8765  9999999      99999999999984

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.93  E-value=5.5e-26  Score=201.17  Aligned_cols=170  Identities=15%  Similarity=0.178  Sum_probs=116.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.+....  ...++.++|++|++. ...+..+|+.+....
T Consensus       356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~  435 (585)
T TIGR01192       356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG  435 (585)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999987432  234578999999873 223555665443211


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . ......   ......+.+..+  ++.        .++            ++.+|+++||||| ++||+.++..+.+.+
T Consensus       436 ~-~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l  514 (585)
T TIGR01192       436 A-TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI  514 (585)
T ss_pred             C-CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            0 000000   000000111111  111        111            8899999999999 699999999999988


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      ..+.+++|+|++      ||+.+.+. .||++    ++.+.  ..++.+++.+
T Consensus       515 ~~~~~~~tvI~i------sH~~~~~~-~~d~i~~l~~G~i~--~~g~~~~l~~  558 (585)
T TIGR01192       515 DALRKNRTTFII------AHRLSTVR-NADLVLFLDQGRLI--EKGSFQELIQ  558 (585)
T ss_pred             HHHhCCCEEEEE------EcChHHHH-cCCEEEEEECCEEE--EECCHHHHHH
Confidence            887679999999      99998774 58883    23333  3345555543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.93  E-value=1e-25  Score=176.12  Aligned_cols=144  Identities=11%  Similarity=0.020  Sum_probs=95.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE-EeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK-VQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~-~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|. ++|....        +++.+. ..+..++.+++.+..... 
T Consensus         8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~--------~~~~~~-l~~~ltv~enl~~~~~~~-   77 (213)
T PRK15177          8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP--------LGANSF-ILPGLTGEENARMMASLY-   77 (213)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec--------cccccc-cCCcCcHHHHHHHHHHHc-
Confidence            67999999999999999999999999999999999997 6664321        121111 122344555543321100 


Q ss_pred             CCCcccceeeehhhhhhhccc--------cc------------ccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCC
Q 029421           80 RWPTVGRYKVDVASFEAIALP--------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNI  138 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~  138 (193)
                      ......   ......+..++.        .+            .++.+|+++|+||| +++|+.++..+..++....++.
T Consensus        78 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~  154 (213)
T PRK15177         78 GLDGDE---FSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQK  154 (213)
T ss_pred             CCCHHH---HHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCC
Confidence            011000   000111111111        11            17889999999999 7999999887777665433456


Q ss_pred             cEEEEecCCCCCCChhHHHHHhcCC
Q 029421          139 PVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       139 tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++|++      ||++..+..+||++
T Consensus       155 ~ii~v------sH~~~~~~~~~d~i  173 (213)
T PRK15177        155 GLIVL------THNPRLIKEHCHAF  173 (213)
T ss_pred             cEEEE------ECCHHHHHHhcCee
Confidence            89999      99999999999984

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=1.9e-25  Score=196.77  Aligned_cols=143  Identities=13%  Similarity=0.166  Sum_probs=106.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .        .++||++|++   .+..++.+++.+....
T Consensus       345 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~  415 (556)
T PRK11819        345 FSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T--------VKLAYVDQSRDALDPNKTVWEEISGGLDI  415 (556)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--------eEEEEEeCchhhcCCCCCHHHHHHhhccc
Confidence            57899999999999999999999999999999999998843 1        2589999974   2334566654432211


Q ss_pred             CCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      . .....  .......++.+++..         ++            ++.+|+++||||| ++||+.++..+.+++..+.
T Consensus       416 ~-~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  492 (556)
T PRK11819        416 I-KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP  492 (556)
T ss_pred             c-ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC
Confidence            0 00000  011224555666531         11            7899999999999 6999999999999888764


Q ss_pred             CCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 SNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       | |||++      |||++++..+||++
T Consensus       493 -~-tvi~v------tHd~~~~~~~~d~i  512 (556)
T PRK11819        493 -G-CAVVI------SHDRWFLDRIATHI  512 (556)
T ss_pred             -C-eEEEE------ECCHHHHHHhCCEE
Confidence             4 89999      99999999999983

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.8e-26  Score=175.34  Aligned_cols=176  Identities=13%  Similarity=0.108  Sum_probs=115.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc---cCCceeeEEEeecCCcccccccccCC-
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLDDRRAPLASINAS-   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~~~~~~~~~~~~~-   74 (193)
                      |+|++||+.+|+||||||||||.+.|+|.  +++++|+|.++|+++....   +.+..+...||.|.. .....+..+- 
T Consensus        25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~e-i~GV~~~~fLr  103 (251)
T COG0396          25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVE-IPGVTNSDFLR  103 (251)
T ss_pred             eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCcc-CCCeeHHHHHH
Confidence            57999999999999999999999999998  4789999999999975432   334556777887732 1222211110 


Q ss_pred             --CCCCCCC-C-cccceeeehhhhhhhccccc----------c------------cCCCCCEEEEecC-CCccccccchH
Q 029421           75 --SPESYRW-P-TVGRYKVDVASFEAIALPEL----------Q------------VGADTDLFVIDEV-GKMELFSSSFF  127 (193)
Q Consensus        75 --~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~----------~------------l~~~p~llllDEp-~~LD~~~~~~~  127 (193)
                        ....... . .........+.++.+++...          +            ++.+|++.||||| +|||..+-+.+
T Consensus       104 ~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V  183 (251)
T COG0396         104 AAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV  183 (251)
T ss_pred             HHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHH
Confidence              0000000 0 00111222334444444321          1            7889999999999 89999999999


Q ss_pred             HHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHh--cCCCcEE--EEeCCCChhHHHHHHHHH
Q 029421          128 PAVLRILES-NIPVLASIPAPKSGRDIPAVARLR--NHPGATI--FTLSPGNRDSLKDNIYYQ  185 (193)
Q Consensus       128 ~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~--d~~~~~~--~~~~~~~~~~l~~~~~~~  185 (193)
                      .+.+..+++ |.+++++      ||.-+.+ .+.  |++++.+  .++..+.. ++.+++.+.
T Consensus       184 ~~~i~~lr~~~~~~liI------THy~rll-~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~  238 (251)
T COG0396         184 AEGINALREEGRGVLII------THYQRLL-DYIKPDKVHVLYDGRIVKSGDP-ELAEELEEK  238 (251)
T ss_pred             HHHHHHHhcCCCeEEEE------ecHHHHH-hhcCCCEEEEEECCEEEecCCH-HHHHHHHHh
Confidence            999999987 9999999      8885444 444  4432221  13444555 566655544

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=4e-26  Score=201.00  Aligned_cols=146  Identities=18%  Similarity=0.190  Sum_probs=107.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.+++         ...+||++|++.  +..++.+++.+.....
T Consensus        28 ~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~---------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~   98 (556)
T PRK11819         28 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP---------GIKVGYLPQEPQLDPEKTVRENVEEGVAEV   98 (556)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------CCEEEEEecCCCCCCCCcHHHHHHHhhHHH
Confidence            67999999999999999999999999999999999999864         246999999862  3345566544321100


Q ss_pred             -------------CCCCcc----------------------cceeeehhhhhhhcccc-------cc------------c
Q 029421           79 -------------YRWPTV----------------------GRYKVDVASFEAIALPE-------LQ------------V  104 (193)
Q Consensus        79 -------------~~~~~~----------------------~~~~~~~~~l~~~~l~~-------~~------------l  104 (193)
                                   ......                      .......+.++.+++..       ++            +
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al  178 (556)
T PRK11819         99 KAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLL  178 (556)
T ss_pred             HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence                         000000                      00112234455555532       21            8


Q ss_pred             CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+|+++||||| ++||+.++..+.++++.+.  .|||++      |||.+++..+||++
T Consensus       179 ~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviii------sHd~~~~~~~~d~i  230 (556)
T PRK11819        179 LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAV------THDRYFLDNVAGWI  230 (556)
T ss_pred             hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEE------eCCHHHHHhhcCeE
Confidence            899999999999 6999999998888888763  599999      99999999999984

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.93  E-value=4.2e-26  Score=205.50  Aligned_cols=170  Identities=15%  Similarity=0.189  Sum_probs=117.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.  ...++.++|++|++. ...+..+|+.+....
T Consensus       478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~  557 (694)
T TIGR01846       478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG  557 (694)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999987533  234678999999873 223556665543211


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . ......   +.....+.++.+  |+.        .++            ++.+|+++||||| ++||+.++..+.+.+
T Consensus       558 ~-~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l  636 (694)
T TIGR01846       558 A-PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM  636 (694)
T ss_pred             C-CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence            0 000000   000001111111  111        111            7899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      +.+..++|+|++      ||+++.+. .||++    +|.+.  ..++.+++.+
T Consensus       637 ~~~~~~~t~i~i------tH~~~~~~-~~d~ii~l~~G~i~--~~g~~~~l~~  680 (694)
T TIGR01846       637 REICRGRTVIII------AHRLSTVR-ACDRIIVLEKGQIA--ESGRHEELLA  680 (694)
T ss_pred             HHHhCCCEEEEE------eCChHHHH-hCCEEEEEeCCEEE--EeCCHHHHHH
Confidence            888678999999      99988775 58983    33333  3345555543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.93  E-value=2.4e-25  Score=195.99  Aligned_cols=146  Identities=18%  Similarity=0.198  Sum_probs=105.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.+++         ...+||++|++.  +..++.+++.+.....
T Consensus        26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~   96 (552)
T TIGR03719        26 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP---------GIKVGYLPQEPQLDPTKTVRENVEEGVAEI   96 (552)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------CCEEEEEeccCCCCCCCcHHHHHHHhhHHH
Confidence            67899999999999999999999999999999999998864         246999999862  3345556544321100


Q ss_pred             -------------CCCCccc----------------------ceeeehhhhhhhccc-------ccc------------c
Q 029421           79 -------------YRWPTVG----------------------RYKVDVASFEAIALP-------ELQ------------V  104 (193)
Q Consensus        79 -------------~~~~~~~----------------------~~~~~~~~l~~~~l~-------~~~------------l  104 (193)
                                   .......                      ......+.++.+++.       .++            +
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al  176 (552)
T TIGR03719        97 KDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL  176 (552)
T ss_pred             HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence                         0000000                      001112234444442       122            7


Q ss_pred             CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+|++|||||| ++||+.++..+.++++.+  +.|||++      |||.+.+..+||++
T Consensus       177 ~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIii------sHd~~~~~~~~d~v  228 (552)
T TIGR03719       177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAV------THDRYFLDNVAGWI  228 (552)
T ss_pred             hcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEE------eCCHHHHHhhcCeE
Confidence            899999999999 699999998888888765  3599999      99999999999983

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=4.7e-26  Score=167.32  Aligned_cols=157  Identities=11%  Similarity=0.163  Sum_probs=121.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc--h------hhccCCceeeEEEeec--CCccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT--G------EIRQGGQRVGFEVVTL--DDRRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~--~------~~~~~~~~ig~~~q~~--~~~~~~~~~   70 (193)
                      |+.++|+.++++||||+|||||+|.+.-+.-|.+|+..+.|...  +      .....++++|++||..  -+.+++.+|
T Consensus        23 l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~en  102 (242)
T COG4161          23 LDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQEN  102 (242)
T ss_pred             ecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHH
Confidence            45689999999999999999999999999999999999977542  1      2234578899999976  345566666


Q ss_pred             ccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           71 INASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      +....................+.++++.+..+.                    ++.+|+++++||| +.|||.-..++..
T Consensus       103 lieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~  182 (242)
T COG4161         103 LIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS  182 (242)
T ss_pred             HHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH
Confidence            433222222233333334456677777665443                    8899999999999 5999999999999


Q ss_pred             HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++++.. |.|-+++      ||..+.+.+.+.++
T Consensus       183 iikel~~tgitqviv------thev~va~k~as~v  211 (242)
T COG4161         183 IIKELAETGITQVIV------THEVEVARKTASRV  211 (242)
T ss_pred             HHHHHHhcCceEEEE------EeehhHHHhhhhhe
Confidence            9999998 9999999      99999999999883

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3e-26  Score=194.17  Aligned_cols=164  Identities=13%  Similarity=0.194  Sum_probs=122.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhcc--CCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQ--GGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~--~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |++++||.++|+|++|||||||+.+|+|.++|++|+|.++|.++...++  .++.+++++|...-+ -+..+|+.+..+.
T Consensus       359 l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~  438 (573)
T COG4987         359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD  438 (573)
T ss_pred             eeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC
Confidence            6789999999999999999999999999999999999999998865544  466788999876322 2444555443321


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc-------------------------------cCCCCCEEEEecCC-Cccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ-------------------------------VGADTDLFVIDEVG-KMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~-------------------------------l~~~p~llllDEp~-~LD~~~~~  125 (193)
                            . ..+...+.+++++++++.                               ++.|++++|||||+ |||+.+..
T Consensus       439 ------A-sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~  511 (573)
T COG4987         439 ------A-SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER  511 (573)
T ss_pred             ------C-CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence                  1 112223445555544321                               77899999999995 99999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      ++.+++..-.+|+|+|++      ||++..++ .||++    +|+  .+..++.+++.+
T Consensus       512 ~vL~ll~~~~~~kTll~v------THrL~~le-~~drIivl~~Gk--iie~G~~~~Ll~  561 (573)
T COG4987         512 QVLALLFEHAEGKTLLMV------THRLRGLE-RMDRIIVLDNGK--IIEEGTHAELLA  561 (573)
T ss_pred             HHHHHHHHHhcCCeEEEE------ecccccHh-hcCEEEEEECCe--eeecCCHHhhhc
Confidence            999999887779999999      99998876 57884    233  344456666655

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.92  E-value=6.8e-26  Score=204.56  Aligned_cols=171  Identities=14%  Similarity=0.189  Sum_probs=116.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.++.+.  ...++.+||++|++.- ..+..+|+.+....
T Consensus       495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~  574 (708)
T TIGR01193       495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE  574 (708)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC
Confidence            57899999999999999999999999999999999999999997543  3446789999999732 23566676553110


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      ........   +.....+..+.+  |+.        .++            ++.+|+++||||| ++||+.+.+.+.+.+
T Consensus       575 ~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L  654 (708)
T TIGR01193       575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL  654 (708)
T ss_pred             CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            00000000   000001111111  111        111            7899999999999 699999988888877


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      +.+ +|+|+|++      ||+++.+ +.||++    +|.++  ..++.+++.++
T Consensus       655 ~~~-~~~T~Iii------tHr~~~~-~~~D~i~~l~~G~i~--~~G~~~~L~~~  698 (708)
T TIGR01193       655 LNL-QDKTIIFV------AHRLSVA-KQSDKIIVLDHGKII--EQGSHDELLDR  698 (708)
T ss_pred             HHh-cCCEEEEE------ecchHHH-HcCCEEEEEECCEEE--EECCHHHHHhc
Confidence            765 47999999      9998766 568884    33333  34556666543

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.92  E-value=7e-26  Score=204.42  Aligned_cols=169  Identities=11%  Similarity=0.133  Sum_probs=113.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+++|+|+++|++|+|.+||.++.+.  ...+++++|++|++.- ..+..+|+.+....
T Consensus       502 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~  581 (711)
T TIGR00958       502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD  581 (711)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999997543  3446789999999832 34566676554221


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. .....   +.....+.++.+  |+.        .++            ++.+|+++||||| ++||+.+...+.+  
T Consensus       582 ~~-~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--  658 (711)
T TIGR00958       582 TP-DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--  658 (711)
T ss_pred             CC-HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--
Confidence            10 00000   000000111111  111        111            7899999999999 6999988777766  


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      ....+++|+|++      ||+++.+. .||++    +|.+  +..++.+++.++
T Consensus       659 ~~~~~~~TvIiI------tHrl~~i~-~aD~IivL~~G~i--ve~Gt~~eL~~~  703 (711)
T TIGR00958       659 SRSRASRTVLLI------AHRLSTVE-RADQILVLKKGSV--VEMGTHKQLMED  703 (711)
T ss_pred             hhccCCCeEEEE------eccHHHHH-hCCEEEEEECCEE--EEeeCHHHHHhC
Confidence            222248999999      99987764 58883    3333  334566666543

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=5.5e-26  Score=173.53  Aligned_cols=163  Identities=12%  Similarity=0.162  Sum_probs=117.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeec----CCcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTL----DDRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~----~~~~~~~~~~~~~   74 (193)
                      ++|.+|+++.++|.||||||||++.|+|-++|++|+|.++|.++...+  .....++-+||+|    ++.++..+|+.+.
T Consensus        27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la  106 (263)
T COG1101          27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA  106 (263)
T ss_pred             eeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHH
Confidence            578999999999999999999999999999999999999999985433  2335577789998    4556777775543


Q ss_pred             CCC--CCCCCcc---cceeeehhhhhhhc--cccc--------c------------cCCCCCEEEEecC-CCccccccch
Q 029421           75 SPE--SYRWPTV---GRYKVDVASFEAIA--LPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        75 ~~~--~~~~~~~---~~~~~~~~~l~~~~--l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      ...  ...+...   .......+.+..++  ++..        +            .+..|++++|||- ++|||....+
T Consensus       107 ~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~  186 (263)
T COG1101         107 ESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF  186 (263)
T ss_pred             HhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHH
Confidence            221  1111110   00011111222222  1111        1            5689999999999 5999999999


Q ss_pred             HHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC----CCcEEEE
Q 029421          127 FPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNH----PGATIFT  169 (193)
Q Consensus       127 ~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~----~~~~~~~  169 (193)
                      ++++-..+. + +.|.+||      ||+++.+..|.+|    ..|.++.
T Consensus       187 vm~lT~kiV~~~klTtlMV------THnm~~Al~yG~RlImLh~G~Ivl  229 (263)
T COG1101         187 VMELTAKIVEEHKLTTLMV------THNMEDALDYGNRLIMLHSGKIVL  229 (263)
T ss_pred             HHHHHHHHHHhcCCceEEE------eccHHHHHhhCCeEEEEeCCeEEE
Confidence            999988764 4 8999999      9999999999999    3566653

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.92  E-value=6.8e-26  Score=200.20  Aligned_cols=155  Identities=15%  Similarity=0.206  Sum_probs=110.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+.  ...++.++|+||++.- ..+..+|+.+..+.
T Consensus       361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~  440 (576)
T TIGR02204       361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD  440 (576)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999987532  2345679999999832 23556665543221


Q ss_pred             CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. ......   .....+.++.+  |+.        .++            ++.+|+++|+||| ++||+.+++.+.+.+
T Consensus       441 ~~-~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l  519 (576)
T TIGR02204       441 AT-DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL  519 (576)
T ss_pred             CC-HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHH
Confidence            10 000000   00001111111  111        111            7789999999999 699999998888888


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+.+++|+|++      ||+.+.+ ..+|++
T Consensus       520 ~~~~~~~t~Iii------tH~~~~~-~~~d~v  544 (576)
T TIGR02204       520 ETLMKGRTTLII------AHRLATV-LKADRI  544 (576)
T ss_pred             HHHhCCCEEEEE------ecchHHH-HhCCEE
Confidence            887668999999      9998665 568883

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.92  E-value=2.9e-25  Score=168.47  Aligned_cols=138  Identities=14%  Similarity=0.176  Sum_probs=92.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      |++++|++++|+||||||||||+|++++    ++|++.++|....   ..+..++|++|.     ..+....+... ...
T Consensus        16 l~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~---~~~~~~~~~~q~-----~~l~~~~L~~~-~~~   82 (176)
T cd03238          16 VSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPK---FSRNKLIFIDQL-----QFLIDVGLGYL-TLG   82 (176)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccc---cccccEEEEhHH-----HHHHHcCCCcc-ccC
Confidence            6899999999999999999999999863    6899998876321   112347787761     11111111100 000


Q ss_pred             CCcccceeeehhhhhhhcccccccCCC--CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHH
Q 029421           81 WPTVGRYKVDVASFEAIALPELQVGAD--TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~--p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~  156 (193)
                      . ...  ....-...++.+. ..++.+  |+++|+||| ++||+.++..+.++++.+++ |.|||++      ||+.+++
T Consensus        83 ~-~~~--~LSgGq~qrl~la-ral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIiv------SH~~~~~  152 (176)
T cd03238          83 Q-KLS--TLSGGELQRVKLA-SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI------EHNLDVL  152 (176)
T ss_pred             C-CcC--cCCHHHHHHHHHH-HHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE------eCCHHHH
Confidence            0 000  0000111222222 126788  999999999 69999999999999988875 9999999      9999876


Q ss_pred             HHHhcC
Q 029421          157 ARLRNH  162 (193)
Q Consensus       157 ~~~~d~  162 (193)
                       +.||+
T Consensus       153 -~~~d~  157 (176)
T cd03238         153 -SSADW  157 (176)
T ss_pred             -HhCCE
Confidence             57887

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.92  E-value=1e-25  Score=197.99  Aligned_cols=155  Identities=15%  Similarity=0.195  Sum_probs=109.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.- ..+..+|+.+....
T Consensus       339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~  418 (544)
T TIGR01842       339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGEN  418 (544)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCC
Confidence            57899999999999999999999999999999999999999987432  2346789999998732 23555565422110


Q ss_pred             CCCCCccc---ceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . ......   +.....+.++.+  |+..        ++            ++.+|+++||||| ++||+.++..+.+.+
T Consensus       419 ~-~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l  497 (544)
T TIGR01842       419 A-DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI  497 (544)
T ss_pred             C-CHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence            0 000000   000011222222  1111        11            7899999999999 699999999999988


Q ss_pred             HHHh-CCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-SNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+. +|+|+|++      ||+...+ +.||++
T Consensus       498 ~~~~~~~~tvi~i------th~~~~~-~~~d~i  523 (544)
T TIGR01842       498 KALKARGITVVVI------THRPSLL-GCVDKI  523 (544)
T ss_pred             HHHhhCCCEEEEE------eCCHHHH-HhCCEE
Confidence            8876 48999999      9998765 568883

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.92  E-value=9.9e-26  Score=199.06  Aligned_cols=146  Identities=18%  Similarity=0.198  Sum_probs=106.0

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE-----------EeceEchhh----ccCCceeeEEEeecCCc--
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK-----------VQGFYTGEI----RQGGQRVGFEVVTLDDR--   64 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~-----------~~g~~~~~~----~~~~~~ig~~~q~~~~~--   64 (193)
                      ++++|++++|+||||||||||+|+|+|+++|++|+|.           ++|.++...    .....++++.+|.....  
T Consensus        95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~  174 (590)
T PRK13409         95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPK  174 (590)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhh
Confidence            4689999999999999999999999999999999997           888876322    11223456666643211  


Q ss_pred             c---cccccccCCCCCCCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCcc
Q 029421           65 R---APLASINASSPESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKME  120 (193)
Q Consensus        65 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD  120 (193)
                      .   ++.+++..          ........+.++.+++...        +            ++.+|+++||||| ++||
T Consensus       175 ~~~~tv~e~l~~----------~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD  244 (590)
T PRK13409        175 VFKGKVRELLKK----------VDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD  244 (590)
T ss_pred             hhcchHHHHHHh----------hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence            1   22222110          0011123345555555322        1            7899999999999 6999


Q ss_pred             ccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          121 LFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       121 ~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +..+..+.++++.+++|.|||++      |||++.+..+||++
T Consensus       245 ~~~~~~l~~~i~~l~~g~tvIiv------sHd~~~l~~~~D~v  281 (590)
T PRK13409        245 IRQRLNVARLIRELAEGKYVLVV------EHDLAVLDYLADNV  281 (590)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEE------eCCHHHHHHhCCEE
Confidence            99999999999987558999999      99999999999984

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.92  E-value=1.8e-25  Score=197.36  Aligned_cols=172  Identities=14%  Similarity=0.223  Sum_probs=123.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |++++|+.+||+|||||||||++++|+|+++|++|+|.+||.++...  ...++.++|+||++..+ .+..+|+.+..+.
T Consensus       350 ~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~  429 (567)
T COG1132         350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD  429 (567)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999998643  34578899999998322 4667776665432


Q ss_pred             CCC--CCcccceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           78 SYR--WPTVGRYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        78 ~~~--~~~~~~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ...  ....-+.....+..+.+  |+..        ++            ++.+|++++|||| +++|+.+...+.+.+.
T Consensus       430 at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~  509 (567)
T COG1132         430 ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK  509 (567)
T ss_pred             CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence            100  00000000011112222  1110        11            8899999999999 6999999998888888


Q ss_pred             HHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      .+.+|+|++++      +|.+..+.. ||++    +|.  .+..++.++|.++
T Consensus       510 ~l~~~rT~iiI------aHRlsti~~-aD~IiVl~~G~--i~e~G~h~eLl~~  553 (567)
T COG1132         510 KLLKGRTTLII------AHRLSTIKN-ADRIIVLDNGR--IVERGTHEELLAK  553 (567)
T ss_pred             HHhcCCEEEEE------eccHhHHHh-CCEEEEEECCE--EEEecCHHHHHHc
Confidence            77778899999      999988876 8984    233  4556778888775

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.3e-25  Score=187.46  Aligned_cols=163  Identities=15%  Similarity=0.161  Sum_probs=118.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++||-+||+|+|||||||++|+|.+... .+|+|++||.+++..  ...|+-|||+||+... ..+.+.|+.+....
T Consensus       373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s  451 (591)
T KOG0057|consen  373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS  451 (591)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC
Confidence            6899999999999999999999999999999 899999999998654  3457889999998632 23566666554432


Q ss_pred             CCCCCcccceeeehhhhhhhccccc-------------------------------ccCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL-------------------------------QVGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~-------------------------------~l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      ..       .+.+.+..++.++.+.                               .++.+|+++++||| +.||..+..
T Consensus       452 as-------~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~  524 (591)
T KOG0057|consen  452 AS-------DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETER  524 (591)
T ss_pred             cC-------HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHH
Confidence            11       1112222233222211                               17899999999999 699999987


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.+.+.....|+|+|++      -|++..+. -||++    ++.+..  .++.+++.+
T Consensus       525 ~i~~~i~~~~~~rTvI~I------vH~l~ll~-~~DkI~~l~nG~v~e--~gth~ell~  574 (591)
T KOG0057|consen  525 EILDMIMDVMSGRTVIMI------VHRLDLLK-DFDKIIVLDNGTVKE--YGTHSELLA  574 (591)
T ss_pred             HHHHHHHHhcCCCeEEEE------EecchhHh-cCCEEEEEECCeeEE--eccHHHHhh
Confidence            777777775569999999      88877665 47883    344333  346667776

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.92  E-value=1.3e-25  Score=199.70  Aligned_cols=156  Identities=16%  Similarity=0.130  Sum_probs=116.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      +++++||+++|+||||||||||+++|+|..++.   +|+|.++|.+... ...++.+||++|++  .+..++.+++.+..
T Consensus        46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~-~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~  124 (617)
T TIGR00955        46 GVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA-KEMRAISAYVQQDDLFIPTLTVREHLMFQA  124 (617)
T ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH-HHHhhhceeeccccccCccCcHHHHHHHHH
Confidence            468999999999999999999999999998875   7999999988642 23456799999986  34457777665432


Q ss_pred             CCCC--CCCcccceeeehhhhhhhcccc--------------cc------------cCCCCCEEEEecC-CCccccccch
Q 029421           76 PESY--RWPTVGRYKVDVASFEAIALPE--------------LQ------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~l~~~~l~~--------------~~------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      ....  ..........+.+.++.+++.+              ++            ++.+|+++++||| +|||+.++..
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~  204 (617)
T TIGR00955       125 HLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS  204 (617)
T ss_pred             hcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHH
Confidence            1110  0011111122344555544422              22            7899999999999 6999999999


Q ss_pred             HHHHHHHHhC-CCcEEEEecCCCCCCChh-HHHHHhcCC
Q 029421          127 FPAVLRILES-NIPVLASIPAPKSGRDIP-AVARLRNHP  163 (193)
Q Consensus       127 ~~~ll~~l~~-g~tvl~~~~~~~~tHd~~-~~~~~~d~~  163 (193)
                      +.+.++.+++ |+|||++      +|+.. ++.+++|++
T Consensus       205 l~~~L~~l~~~g~tvi~~------~hq~~~~i~~~~D~i  237 (617)
T TIGR00955       205 VVQVLKGLAQKGKTIICT------IHQPSSELFELFDKI  237 (617)
T ss_pred             HHHHHHHHHhCCCEEEEE------eCCCCHHHHHHhceE
Confidence            9999999876 9999999      99985 678899983

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.92  E-value=2.5e-25  Score=198.60  Aligned_cols=142  Identities=19%  Similarity=0.263  Sum_probs=103.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~   77 (193)
                      |+|.+|++++|+||||||||||+|+|+|+++|++|+|.+ |..        .++||++|+.   .+..++.+++......
T Consensus       340 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~--------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~  410 (635)
T PRK11147        340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK--------LEVAYFDQHRAELDPEKTVMDNLAEGKQE  410 (635)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC--------cEEEEEeCcccccCCCCCHHHHHHhhccc
Confidence            578999999999999999999999999999999999988 432        2589999864   2334556554332110


Q ss_pred             CCCCCcccceeeehhhhhhhccc---------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP---------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~---------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      . ...  .......+.+..+++.         .++            ++.+|++|||||| ++||+.++..+.++++.+ 
T Consensus       411 ~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-  486 (635)
T PRK11147        411 V-MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-  486 (635)
T ss_pred             c-ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-
Confidence            0 000  0011223444444442         111            7889999999999 699999988777777765 


Q ss_pred             CCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          136 SNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                       +.|||+|      |||..++..+||+
T Consensus       487 -~~tvi~v------SHd~~~~~~~~d~  506 (635)
T PRK11147        487 -QGTVLLV------SHDRQFVDNTVTE  506 (635)
T ss_pred             -CCeEEEE------ECCHHHHHHhcCE
Confidence             4599999      9999999999998

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.1e-25  Score=198.98  Aligned_cols=139  Identities=14%  Similarity=0.173  Sum_probs=102.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc----ccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR----RAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~----~~~~~~~~~~~~   76 (193)
                      |+|.+|++++|+||||||||||+|+|+|+++|++|+|.+++         ..++||++|+....    .++.++...   
T Consensus       333 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~igy~~Q~~~~~l~~~~~~~~~~~~---  400 (638)
T PRK10636        333 LNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK---------GIKLGYFAQHQLEFLRADESPLQHLAR---  400 (638)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC---------CEEEEEecCcchhhCCccchHHHHHHH---
Confidence            57899999999999999999999999999999999999863         13689999864111    122221100   


Q ss_pred             CCCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                          ...........+.+..+++..         ++            ++.+|++|||||| ++||+.++..+.+++..+
T Consensus       401 ----~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~  476 (638)
T PRK10636        401 ----LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF  476 (638)
T ss_pred             ----hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence                000001112334555555531         11            7899999999999 699999999999988877


Q ss_pred             hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                        +.|||+|      |||..++.++||++
T Consensus       477 --~gtvi~v------SHd~~~~~~~~d~i  497 (638)
T PRK10636        477 --EGALVVV------SHDRHLLRSTTDDL  497 (638)
T ss_pred             --CCeEEEE------eCCHHHHHHhCCEE
Confidence              3499999      99999999999983

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=9.6e-26  Score=168.85  Aligned_cols=144  Identities=18%  Similarity=0.187  Sum_probs=104.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhcc-CCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQ-GGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~-~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |++.+||++.|.||||||||||+|+|+|+++|++|+|.++|..+...+. ..+.+-|+-..+  -..+++++|+.+....
T Consensus        23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~  102 (209)
T COG4133          23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRF  102 (209)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999987743332 223344443333  3456777776553211


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..    ........+.++.+++..+.                    +++.+++.||||| +++|......+..++..-..
T Consensus       103 ~~----~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~  178 (209)
T COG4133         103 HG----SGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA  178 (209)
T ss_pred             hC----CCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc
Confidence            10    01112234556666654332                    6789999999999 79999999999999988665


Q ss_pred             -CCcEEEEecCCCCCCChh
Q 029421          137 -NIPVLASIPAPKSGRDIP  154 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~  154 (193)
                       |--||++      ||...
T Consensus       179 ~GGiVllt------tHq~l  191 (209)
T COG4133         179 QGGIVLLT------THQPL  191 (209)
T ss_pred             CCCEEEEe------cCCcc
Confidence             8888999      78743

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=2e-25  Score=204.21  Aligned_cols=172  Identities=13%  Similarity=0.198  Sum_probs=123.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+|||||||||++++|.+++.|++|+|.+||.++..  .+..+.++|.|.|+|.. ..+..+|+.+..+.
T Consensus       374 l~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d  453 (1228)
T KOG0055|consen  374 LKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD  453 (1228)
T ss_pred             EEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc
Confidence            5789999999999999999999999999999999999999999743  34557799999999832 34566776654432


Q ss_pred             CCCCCccc------ceeeehhh---hhh-hc-----cc---------ccccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           78 SYRWPTVG------RYKVDVAS---FEA-IA-----LP---------ELQVGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        78 ~~~~~~~~------~~~~~~~~---l~~-~~-----l~---------~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .....-.+      ........   ++. +|     |+         ..+++.+|++|||||| ++||+.++..+++.++
T Consensus       454 at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd  533 (1228)
T KOG0055|consen  454 ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALD  533 (1228)
T ss_pred             ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHH
Confidence            11000000      00000000   000 00     00         0118899999999999 6999999999999999


Q ss_pred             HHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      ....|.|.|++      +|++..+.+ +|++    +|+  .+..++.++|.+.
T Consensus       534 ~~~~grTTivV------aHRLStIrn-aD~I~v~~~G~--IvE~G~h~ELi~~  577 (1228)
T KOG0055|consen  534 KASKGRTTIVV------AHRLSTIRN-ADKIAVMEEGK--IVEQGTHDELIAL  577 (1228)
T ss_pred             HhhcCCeEEEE------eeehhhhhc-cCEEEEEECCE--EEEecCHHHHHhc
Confidence            98889999999      999999987 8884    333  3445667766554

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.3e-25  Score=192.15  Aligned_cols=174  Identities=13%  Similarity=0.142  Sum_probs=122.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++||++||+||||+||||+.++|..++.|++|+|.+||.++.+.  ...+++||+|-|+|..+ .+..+|+.+....
T Consensus       489 fti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~  568 (716)
T KOG0058|consen  489 FTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN  568 (716)
T ss_pred             eeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC
Confidence            68999999999999999999999999999999999999999998543  34468899999998332 3566777665431


Q ss_pred             CCCCCccc---ceeeehhhhhh--------hccc--------------ccccCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEA--------IALP--------------ELQVGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~--------~~l~--------------~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      . ......   +..-..+....        +|-.              ..+|+.||++|||||. ++||.++...+.+.+
T Consensus       569 ~-t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL  647 (716)
T KOG0058|consen  569 A-TDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL  647 (716)
T ss_pred             C-CHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence            0 000000   00000000000        0100              0118899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcE--EEEeCCCChhHHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHPGAT--IFTLSPGNRDSLKDNI  182 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~--~~~~~~~~~~~l~~~~  182 (193)
                      ..+.++.|||++      .|.+..++ -||++.+.  -.+...++.+++.++-
T Consensus       648 ~~~~~~rTVlvI------AHRLSTV~-~Ad~Ivvi~~G~V~E~G~h~eLl~~~  693 (716)
T KOG0058|consen  648 DRLMQGRTVLVI------AHRLSTVR-HADQIVVIDKGRVVEMGTHDELLSKP  693 (716)
T ss_pred             HHhhcCCeEEEE------ehhhhHhh-hccEEEEEcCCeEEecccHHHHhhCc
Confidence            988888999999      99998886 47763211  1134445666666544

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.91  E-value=8.7e-25  Score=180.12  Aligned_cols=156  Identities=17%  Similarity=0.225  Sum_probs=121.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-----hhccCCceeeEEEeecCCcccc----cccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-----EIRQGGQRVGFEVVTLDDRRAP----LASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-----~~~~~~~~ig~~~q~~~~~~~~----~~~~   71 (193)
                      |++.+|+.++|+|.||||||||-++|.++++++ |+|+|+|.++.     ..+..++++-.+||+|++..++    .+.+
T Consensus       308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII  386 (534)
T COG4172         308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII  386 (534)
T ss_pred             eEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence            578899999999999999999999999999987 99999999873     3345577889999999654433    2222


Q ss_pred             cCCCCCC-CCCCcccceeeehhhhhhhcccccc---------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           72 NASSPES-YRWPTVGRYKVDVASFEAIALPELQ---------------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        72 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~---------------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      .....-. ......+..+++.+.++.+|+..-.                     ++.+|++++|||| ++||...+.++.
T Consensus       387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv  466 (534)
T COG4172         387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL  466 (534)
T ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHH
Confidence            2221110 0112223345566788888875321                     8899999999999 699999999999


Q ss_pred             HHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+.+  |.+-+++      |||+..+..+|+++
T Consensus       467 ~LLr~LQ~k~~LsYLFI------SHDL~VvrAl~~~v  497 (534)
T COG4172         467 DLLRDLQQKHGLSYLFI------SHDLAVVRALCHRV  497 (534)
T ss_pred             HHHHHHHHHhCCeEEEE------eccHHHHHHhhceE
Confidence            99999865  9999999      99999999999994

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.6e-25  Score=195.08  Aligned_cols=146  Identities=12%  Similarity=0.172  Sum_probs=99.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc-ccccccccC------
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR-RAPLASINA------   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~-~~~~~~~~~------   73 (193)
                      |+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|..         .++|++|+.... .+....+..      
T Consensus        22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---------~i~~~~q~~~~~~~~~~~~v~~~~~~~~   92 (638)
T PRK10636         22 ATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---------QLAWVNQETPALPQPALEYVIDGDREYR   92 (638)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC---------EEEEEecCCCCCCCCHHHHHHHhhHHHH
Confidence            6799999999999999999999999999999999999998732         355655532110 111100000      


Q ss_pred             ------------CC-CCC---CC----CCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEE
Q 029421           74 ------------SS-PES---YR----WPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFV  112 (193)
Q Consensus        74 ------------~~-~~~---~~----~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~lll  112 (193)
                                  .. ...   ..    ...........+.++.+++..         ++            |+.+|++||
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLL  172 (638)
T PRK10636         93 QLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL  172 (638)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEE
Confidence                        00 000   00    000001123345666777641         11            889999999


Q ss_pred             EecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          113 IDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       113 lDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |||| ++||+.++..+.++++.+  +.|||+|      |||..++.++||++
T Consensus       173 LDEPtn~LD~~~~~~L~~~L~~~--~~tviiv------sHd~~~l~~~~d~i  216 (638)
T PRK10636        173 LDEPTNHLDLDAVIWLEKWLKSY--QGTLILI------SHDRDFLDPIVDKI  216 (638)
T ss_pred             EcCCCCcCCHHHHHHHHHHHHhC--CCeEEEE------eCCHHHHHHhcCEE
Confidence            9999 699999988777777654  5799999      99999999999983

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.91  E-value=7.9e-25  Score=184.48  Aligned_cols=174  Identities=16%  Similarity=0.164  Sum_probs=116.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hhccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EIRQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |++.+|+.++|+||||||||||.|+|.|..+|.+|.|++||-++.  +.....+.+||.||+...+ -+.-+|+.-....
T Consensus       357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~  436 (580)
T COG4618         357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEE  436 (580)
T ss_pred             eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcccc
Confidence            689999999999999999999999999999999999999998874  4456689999999987322 2444453211000


Q ss_pred             CCCC--Ccccceeeehhhhhhh--ccc--------cc------------ccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           78 SYRW--PTVGRYKVDVASFEAI--ALP--------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        78 ~~~~--~~~~~~~~~~~~l~~~--~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ....  ....+...+.+..-++  |.+        .+            .+..+|.+++|||| ++||.....-+.+.+.
T Consensus       437 ~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~  516 (580)
T COG4618         437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL  516 (580)
T ss_pred             CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence            0000  0000000011111111  000        00            17789999999999 6999999887777777


Q ss_pred             HHhC-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHH
Q 029421          133 ILES-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIY  183 (193)
Q Consensus       133 ~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~  183 (193)
                      ..++ |.|+|++      +|... +...+|++    +|.  .-..++++++.+++.
T Consensus       517 ~~k~rG~~vvvi------aHRPs-~L~~~Dkilvl~~G~--~~~FG~r~eVLa~~~  563 (580)
T COG4618         517 AAKARGGTVVVI------AHRPS-ALASVDKILVLQDGR--IAAFGPREEVLAKVL  563 (580)
T ss_pred             HHHHcCCEEEEE------ecCHH-HHhhcceeeeecCCh--HHhcCCHHHHHHHhc
Confidence            7766 9999999      99965 55678883    122  123356667766654

>PLN03073 ABC transporter F family; Provisional

Probab=99.91  E-value=7.9e-25  Score=196.78  Aligned_cols=143  Identities=15%  Similarity=0.137  Sum_probs=100.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      |+|.+|++++|+||||||||||+|+|+|+++|++|+|.+++         +.++||++|++....+...+........  
T Consensus       530 l~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~---------~~~igyv~Q~~~~~l~~~~~~~~~~~~~--  598 (718)
T PLN03073        530 FGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA---------KVRMAVFSQHHVDGLDLSSNPLLYMMRC--  598 (718)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC---------ceeEEEEeccccccCCcchhHHHHHHHh--
Confidence            57899999999999999999999999999999999998754         2468999997522222222111000000  


Q ss_pred             CCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCC
Q 029421           81 WPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNI  138 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~  138 (193)
                      .... ......+.++.+++..         ++            ++.+|++|||||| ++||+.++..+.+.+...  +.
T Consensus       599 ~~~~-~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g  675 (718)
T PLN03073        599 FPGV-PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG  675 (718)
T ss_pred             cCCC-CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC
Confidence            0000 0122334555555531         11            7899999999999 699999887666655543  34


Q ss_pred             cEEEEecCCCCCCChhHHHHHhcCC
Q 029421          139 PVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       139 tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |||++      |||..++..+||++
T Consensus       676 tvIiv------SHd~~~i~~~~drv  694 (718)
T PLN03073        676 GVLMV------SHDEHLISGSVDEL  694 (718)
T ss_pred             EEEEE------ECCHHHHHHhCCEE
Confidence            99999      99999999999983

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.91  E-value=4.3e-25  Score=210.23  Aligned_cols=154  Identities=15%  Similarity=0.114  Sum_probs=113.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLK---ASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~---~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      +++++|++++|+||||||||||+++|+|..+   |++|+|.++|++...  ..++.+||++|+.  .+..++.+++.+..
T Consensus       784 ~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a  861 (1394)
T TIGR00956       784 GWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--SFQRSIGYVQQQDLHLPTSTVRESLRFSA  861 (1394)
T ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh--hhhcceeeecccccCCCCCCHHHHHHHHH
Confidence            4689999999999999999999999999997   788999999998742  3456799999975  34456666654421


Q ss_pred             CCCC--CCCcccceeeehhhhhhhcccc------------cc------------cCCCCC-EEEEecC-CCccccccchH
Q 029421           76 PESY--RWPTVGRYKVDVASFEAIALPE------------LQ------------VGADTD-LFVIDEV-GKMELFSSSFF  127 (193)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~l~~~~l~~------------~~------------l~~~p~-llllDEp-~~LD~~~~~~~  127 (193)
                      ....  ............+.++.+++.+            ++            ++.+|+ +|+|||| +|||+.++..+
T Consensus       862 ~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i  941 (1394)
T TIGR00956       862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSI  941 (1394)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHH
Confidence            1000  0111111122344555555432            22            788997 9999999 69999999999


Q ss_pred             HHHHHHHhC-CCcEEEEecCCCCCCChhH-HHHHhcC
Q 029421          128 PAVLRILES-NIPVLASIPAPKSGRDIPA-VARLRNH  162 (193)
Q Consensus       128 ~~ll~~l~~-g~tvl~~~~~~~~tHd~~~-~~~~~d~  162 (193)
                      .++++.+++ |.|||++      +|+++. +.+.+|+
T Consensus       942 ~~~L~~la~~g~tvI~t------~H~~~~~~~~~~D~  972 (1394)
T TIGR00956       942 CKLMRKLADHGQAILCT------IHQPSAILFEEFDR  972 (1394)
T ss_pred             HHHHHHHHHcCCEEEEE------ecCCCHHHHHhcCE
Confidence            999999866 9999999      999876 4567888

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.91  E-value=2.1e-24  Score=189.80  Aligned_cols=144  Identities=14%  Similarity=0.125  Sum_probs=101.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+....  ...++.++|++|++.-+ .+..+|. ...  
T Consensus       344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-~~~--  420 (547)
T PRK10522        344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEG-KPA--  420 (547)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhcccc-Cch--
Confidence            57899999999999999999999999999999999999999987532  23467899999987311 1111220 000  


Q ss_pred             CCCCCcccceeeehhhhhhhccc-------------cc------------ccCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-------------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-------------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                          .    .....+.++.+++.             .+            .++.+|+++||||| ++||+.+...+.+.+
T Consensus       421 ----~----~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l  492 (547)
T PRK10522        421 ----N----PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL  492 (547)
T ss_pred             ----H----HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence                0    00000111111110             11            17899999999999 699999988776666


Q ss_pred             HH-HhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          132 RI-LES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       132 ~~-l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .. ++. |+|+|++      ||+.+.+ +.||+
T Consensus       493 ~~~~~~~~~tvi~i------tH~~~~~-~~~d~  518 (547)
T PRK10522        493 LPLLQEMGKTIFAI------SHDDHYF-IHADR  518 (547)
T ss_pred             HHHHHhCCCEEEEE------EechHHH-HhCCE
Confidence            54 444 8999999      9998654 57888

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.90  E-value=1.5e-24  Score=178.68  Aligned_cols=174  Identities=18%  Similarity=0.284  Sum_probs=129.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCeEEeceEch-----hhc-cCCceeeEEEeecCCcccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTG-----EIR-QGGQRVGFEVVTLDDRRAPLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-----~~G~i~~~g~~~~-----~~~-~~~~~ig~~~q~~~~~~~~~~   69 (193)
                      |+|.+||.++|+|.||||||-..+.|+++++.     -+|+|.|+|.++-     ..+ ..+.+|+++||+|....+++.
T Consensus        31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~  110 (534)
T COG4172          31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLH  110 (534)
T ss_pred             eeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHh
Confidence            67899999999999999999999999999975     3689999999862     122 235689999999854444443


Q ss_pred             cccCCCCC----CCCCCcccceeeehhhhhhhcccccc-----------------------cCCCCCEEEEecC-CCccc
Q 029421           70 SINASSPE----SYRWPTVGRYKVDVASFEAIALPELQ-----------------------VGADTDLFVIDEV-GKMEL  121 (193)
Q Consensus        70 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~-----------------------l~~~p~llllDEp-~~LD~  121 (193)
                      .+.-...+    ...........+..++++.+|+.+-.                       ++++|++||.||| ++||.
T Consensus       111 tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDV  190 (534)
T COG4172         111 TIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDV  190 (534)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhh
Confidence            32211111    11112223335567788888876432                       8899999999999 69999


Q ss_pred             cccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEE--EEeCCCChhHHHH
Q 029421          122 FSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATI--FTLSPGNRDSLKD  180 (193)
Q Consensus       122 ~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~--~~~~~~~~~~l~~  180 (193)
                      ..+.++.++++.++.  |.+++++      |||+..+.++||++.+.-  ..++.+..+.++.
T Consensus       191 tvQaQIL~Ll~~Lq~~~gMa~lfI------THDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~  247 (534)
T COG4172         191 TVQAQILDLLKELQAELGMAILFI------THDLGIVRKFADRVYVMQHGEIVETGTTETLFA  247 (534)
T ss_pred             hhHHHHHHHHHHHHHHhCcEEEEE------eccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence            999999999999875  9999999      999999999999975432  2455555555443

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.90  E-value=3.8e-24  Score=191.55  Aligned_cols=145  Identities=12%  Similarity=0.090  Sum_probs=101.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.+++         +++++|++|++. ...+..+++.+......
T Consensus       473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~  543 (659)
T TIGR00954       473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---------KGKLFYVPQRPYMTLGTLRDQIIYPDSSED  543 (659)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---------CCcEEEECCCCCCCCcCHHHHHhcCCChhh
Confidence            57899999999999999999999999999999999998753         457999999872 22255566544321000


Q ss_pred             CCCcccceeeehhhhhhhccc-----------------ccc------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           80 RWPTVGRYKVDVASFEAIALP-----------------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~-----------------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      ............+.++.+++.                 .++            ++.+|+++||||| ++||+.++..+.+
T Consensus       544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~  623 (659)
T TIGR00954       544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR  623 (659)
T ss_pred             hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence            000000011122333333332                 122            7899999999999 6999998877777


Q ss_pred             HHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++..  |.|+|++      ||+.+.+ ++||++
T Consensus       624 ~l~~~--~~tvI~i------sH~~~~~-~~~d~i  648 (659)
T TIGR00954       624 LCREF--GITLFSV------SHRKSLW-KYHEYL  648 (659)
T ss_pred             HHHHc--CCEEEEE------eCchHHH-HhCCEE
Confidence            66543  8999999      9998865 678873

>PLN03140 ABC transporter G family member; Provisional

Probab=99.90  E-value=9.9e-25  Score=207.74  Aligned_cols=155  Identities=14%  Similarity=0.111  Sum_probs=113.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~   76 (193)
                      +++++|++++|+|||||||||||++|+|..++  .+|+|.++|.+.... ..++.+||++|+.  .+..++.+++.+...
T Consensus       901 ~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~-~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~  979 (1470)
T PLN03140        901 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVTVRESLIYSAF  979 (1470)
T ss_pred             EEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChH-HhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence            46889999999999999999999999999763  689999999875322 2345689999975  344566666544221


Q ss_pred             CCC--CCCcccceeeehhhhhhhcccc-------------cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           77 ESY--RWPTVGRYKVDVASFEAIALPE-------------LQ------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        77 ~~~--~~~~~~~~~~~~~~l~~~~l~~-------------~~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ...  ..........+.+.++.+++.+             ++            |+.+|++|+|||| +|||+.++..+.
T Consensus       980 lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~ 1059 (1470)
T PLN03140        980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059 (1470)
T ss_pred             hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence            000  0011111122334555544432             22            8899999999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChh-HHHHHhcC
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIP-AVARLRNH  162 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~-~~~~~~d~  162 (193)
                      ++++.+++ |.|||++      +|+.+ .+.+++|+
T Consensus      1060 ~~L~~l~~~g~tVI~t------~Hq~~~~i~~~~D~ 1089 (1470)
T PLN03140       1060 RTVRNTVDTGRTVVCT------IHQPSIDIFEAFDE 1089 (1470)
T ss_pred             HHHHHHHHCCCEEEEE------eCCCCHHHHHhCCE
Confidence            99999876 9999999      99987 46788998

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.90  E-value=2.1e-24  Score=190.13  Aligned_cols=146  Identities=12%  Similarity=0.103  Sum_probs=103.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.++|++|++.-+ .+..+|..     
T Consensus       363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~-----  437 (555)
T TIGR01194       363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG-----  437 (555)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc-----
Confidence            57899999999999999999999999999999999999999987532  23456799999986311 12222210     


Q ss_pred             CCCCCcccceeeehhhhhhhccc--------------ccc------------cCCCCCEEEEecC-CCccccccchHHH-
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP--------------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA-  129 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~--------------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~-  129 (193)
                          +.. ......+.++.+++.              .++            ++.+|+++||||| ++||+.++..+.+ 
T Consensus       438 ----~~~-~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~  512 (555)
T TIGR01194       438 ----EHA-SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEE  512 (555)
T ss_pred             ----cch-hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence                000 001111222222221              121            7899999999999 6999999887765 


Q ss_pred             HHHHHh-CCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILE-SNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~-~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.++ .|+|+|++      ||+.+.+ +.||++
T Consensus       513 l~~~~~~~~~tiiii------sH~~~~~-~~~d~i  540 (555)
T TIGR01194       513 LLPDLKRQGKTIIII------SHDDQYF-ELADQI  540 (555)
T ss_pred             HHHHHHhCCCEEEEE------eccHHHH-HhCCEE
Confidence            555554 48999999      9998755 578883

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.90  E-value=2.2e-24  Score=206.84  Aligned_cols=163  Identities=10%  Similarity=0.112  Sum_probs=119.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.  ...+++++|+||++.-+ .+..+|+..... 
T Consensus      1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~- 1335 (1495)
T PLN03232       1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE- 1335 (1495)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCC-
Confidence            57899999999999999999999999999999999999999998543  34578899999998322 355566543211 


Q ss_pred             CCCCCcccceeeehhhhhhhc-----------cc--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIA-----------LP--------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~-----------l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                         ...    +...+.++..+           +.        .++            ++.+|++|||||| +++|+.+..
T Consensus      1336 ---~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~ 1408 (1495)
T PLN03232       1336 ---HND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408 (1495)
T ss_pred             ---CCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence               000    01111122111           11        111            7899999999999 699999998


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.+.++...+++|+|++      +|+++.+.. ||++    +|.++  +.+++++|.+
T Consensus      1409 ~Iq~~L~~~~~~~TvI~I------AHRl~ti~~-~DrIlVL~~G~iv--E~Gt~~eLl~ 1458 (1495)
T PLN03232       1409 LIQRTIREEFKSCTMLVI------AHRLNTIID-CDKILVLSSGQVL--EYDSPQELLS 1458 (1495)
T ss_pred             HHHHHHHHHcCCCEEEEE------eCCHHHHHh-CCEEEEEECCEEE--EECCHHHHHh
Confidence            899998887678999999      999988765 8884    34443  3456666654

>PLN03130 ABC transporter C family member; Provisional

Probab=99.90  E-value=2.9e-24  Score=206.62  Aligned_cols=164  Identities=10%  Similarity=0.130  Sum_probs=120.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++...  ...|++++++||++..+ .+..+|+......
T Consensus      1260 ~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~ 1339 (1622)
T PLN03130       1260 FEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEH 1339 (1622)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCC
Confidence            67999999999999999999999999999999999999999998543  34578899999998322 3555665432110


Q ss_pred             CCCCCcccceeeehhhhhhhcc-----------c--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIAL-----------P--------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l-----------~--------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                          .    .....++++..++           .        .++            ++.+|++|||||| +++|..+..
T Consensus      1340 ----t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~ 1411 (1622)
T PLN03130       1340 ----N----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411 (1622)
T ss_pred             ----C----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence                0    0111122222111           1        111            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      .+.+.++...+++|+|++      +|+++.+.. ||++    +|.+  +..+++++|.++
T Consensus      1412 ~Iq~~I~~~~~~~TvI~I------AHRL~tI~~-~DrIlVLd~G~I--vE~Gt~~eLl~~ 1462 (1622)
T PLN03130       1412 LIQKTIREEFKSCTMLII------AHRLNTIID-CDRILVLDAGRV--VEFDTPENLLSN 1462 (1622)
T ss_pred             HHHHHHHHHCCCCEEEEE------eCChHHHHh-CCEEEEEECCEE--EEeCCHHHHHhC
Confidence            999999887679999999      999998865 8984    3443  344566666543

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=2.4e-24  Score=190.88  Aligned_cols=146  Identities=18%  Similarity=0.213  Sum_probs=110.8

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhccc---CCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKA---SNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSP   76 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~---~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~   76 (193)
                      .+++||+.||+||+||||||||++|+|-...   .+|+|.+||+... .+..++.+||+.|+.  .+..++.+.+.+...
T Consensus        52 ~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~-~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~  130 (613)
T KOG0061|consen   52 TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD-SRSFRKISGYVQQDDVLLPTLTVRETLRFSAL  130 (613)
T ss_pred             EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc-hhhhhheeEEEcccccccccccHHHHHHHHHH
Confidence            4789999999999999999999999999874   6899999995542 334567899999975  456666665544322


Q ss_pred             CCCC--CCcccceeeehhhhhhhcccccc-------------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           77 ESYR--WPTVGRYKVDVASFEAIALPELQ-------------------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        77 ~~~~--~~~~~~~~~~~~~l~~~~l~~~~-------------------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ....  ....++..++.+.++.+++....                         ++.||.++++||| +|||..+..++.
T Consensus       131 lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv  210 (613)
T KOG0061|consen  131 LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVV  210 (613)
T ss_pred             hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHH
Confidence            1111  12223334556666666665322                         8899999999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCC
Q 029421          129 AVLRILES-NIPVLASIPAPK  148 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~  148 (193)
                      ++++.+++ |+|||+++|.|.
T Consensus       211 ~~Lk~lA~~grtVi~tIHQPs  231 (613)
T KOG0061|consen  211 QLLKRLARSGRTVICTIHQPS  231 (613)
T ss_pred             HHHHHHHhCCCEEEEEEeCCc
Confidence            99999987 999999987653

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.90  E-value=4.8e-24  Score=203.53  Aligned_cols=165  Identities=10%  Similarity=0.165  Sum_probs=120.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc------------------------------------------------
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA------------------------------------------------   32 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~------------------------------------------------   32 (193)
                      |+|++|+.+||+||||||||||+++|+|+++|                                                
T Consensus      1189 l~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 (1466)
T PTZ00265       1189 FSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGE 1268 (1466)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            57999999999999999999999999999998                                                


Q ss_pred             ------CCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCCCCCCCcccceeeehhhhhhhcc----
Q 029421           33 ------SNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPESYRWPTVGRYKVDVASFEAIAL----   99 (193)
Q Consensus        33 ------~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----   99 (193)
                            ++|+|.++|.++...  ...++.+|||+|++.. ..+..+|+.+.....      .. +...++++..++    
T Consensus      1269 ~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~a------t~-eeI~~A~k~A~l~~fI 1341 (1466)
T PTZ00265       1269 DSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA------TR-EDVKRACKFAAIDEFI 1341 (1466)
T ss_pred             ccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCC------CH-HHHHHHHHHcCCHHHH
Confidence                  699999999998543  3557889999999843 346677766643211      00 011111111111    


Q ss_pred             -------c--------cc------------ccCCCCCEEEEecC-CCccccccchHHHHHHHHh--CCCcEEEEecCCCC
Q 029421          100 -------P--------EL------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLRILE--SNIPVLASIPAPKS  149 (193)
Q Consensus       100 -------~--------~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~--~g~tvl~~~~~~~~  149 (193)
                             .        .+            +++.+|++|||||| ++||+.+.+.+.+.+..+.  +++|+|++      
T Consensus      1342 ~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiI------ 1415 (1466)
T PTZ00265       1342 ESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI------ 1415 (1466)
T ss_pred             HhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEE------
Confidence                   1        01            18899999999999 6999999988888888874  48999999      


Q ss_pred             CCChhHHHHHhcCCC--------cEEEEeCCCChhHHHH
Q 029421          150 GRDIPAVARLRNHPG--------ATIFTLSPGNRDSLKD  180 (193)
Q Consensus       150 tHd~~~~~~~~d~~~--------~~~~~~~~~~~~~l~~  180 (193)
                      +|++..+. .||++-        |.+ +...+..++|.+
T Consensus      1416 aHRlsti~-~aD~Ivvl~~~~~~G~i-v~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1416 AHRIASIK-RSDKIVVFNNPDRTGSF-VQAHGTHEELLS 1452 (1466)
T ss_pred             echHHHHH-hCCEEEEEeCCCCCCCE-EEEecCHHHHHh
Confidence            99997765 589841        222 224566677764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.90  E-value=1.1e-23  Score=187.99  Aligned_cols=146  Identities=10%  Similarity=0.116  Sum_probs=97.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc--ccccccc-------
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR--RAPLASI-------   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~--~~~~~~~-------   71 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|..         .++|++|.+...  .+.++..       
T Consensus        24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---------~~~~l~q~~~~~~~~~v~~~~~~~~~~~   94 (635)
T PRK11147         24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---------IVARLQQDPPRNVEGTVYDFVAEGIEEQ   94 (635)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC---------EEEEeccCCCCCCCCCHHHHHHHhhHHH
Confidence            6789999999999999999999999999999999999987631         123333321000  0000000       


Q ss_pred             ----------cC--CC---CCC----------CC-CCcccceeeehhhhhhhccc------ccc------------cCCC
Q 029421           72 ----------NA--SS---PES----------YR-WPTVGRYKVDVASFEAIALP------ELQ------------VGAD  107 (193)
Q Consensus        72 ----------~~--~~---~~~----------~~-~~~~~~~~~~~~~l~~~~l~------~~~------------l~~~  107 (193)
                                ..  ..   ...          .. ...........++++.+++.      .++            |+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~  174 (635)
T PRK11147         95 AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSN  174 (635)
T ss_pred             HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcC
Confidence                      00  00   000          00 00000112234455666653      122            8899


Q ss_pred             CCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          108 TDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       108 p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |++|||||| ++||+.++..+.++++.+.  .|||+|      |||..++..+||++
T Consensus       175 P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvliv------sHd~~~l~~~~d~i  223 (635)
T PRK11147        175 PDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFI------SHDRSFIRNMATRI  223 (635)
T ss_pred             CCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEE------eCCHHHHHHhcCeE
Confidence            999999999 6999999988888887763  599999      99999999999984

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.89  E-value=6.4e-24  Score=202.25  Aligned_cols=157  Identities=12%  Similarity=0.065  Sum_probs=115.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc----ccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL----KASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~----~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      +++++||+++|+||||||||||||+|+|..    +|++|+|.++|.+.... ...++.++|++|+.  .+..++.+++.+
T Consensus        82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f  161 (1394)
T TIGR00956        82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDF  161 (1394)
T ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHH
Confidence            468899999999999999999999999986    57899999999887432 23456799999975  444566666544


Q ss_pred             CCCCCC------CCCcccce-eeehhhhhhhccccc-------------c------------cCCCCCEEEEecC-CCcc
Q 029421           74 SSPESY------RWPTVGRY-KVDVASFEAIALPEL-------------Q------------VGADTDLFVIDEV-GKME  120 (193)
Q Consensus        74 ~~~~~~------~~~~~~~~-~~~~~~l~~~~l~~~-------------~------------l~~~p~llllDEp-~~LD  120 (193)
                      ......      .....+.. ......++.+++.+.             +            ++.+|+++++||| +|||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD  241 (1394)
T TIGR00956       162 AARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD  241 (1394)
T ss_pred             HHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence            321000      00111111 112335666666432             1            7899999999999 6999


Q ss_pred             ccccchHHHHHHHHh-C-CCcEEEEecCCCCCCCh-hHHHHHhcCC
Q 029421          121 LFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDI-PAVARLRNHP  163 (193)
Q Consensus       121 ~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~-~~~~~~~d~~  163 (193)
                      +.++..+.++++.++ + |.|||++      +|+. +.+.+++|++
T Consensus       242 ~~~~~~i~~~L~~la~~~g~tvii~------~Hq~~~~i~~l~D~v  281 (1394)
T TIGR00956       242 SATALEFIRALKTSANILDTTPLVA------IYQCSQDAYELFDKV  281 (1394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEE------ecCCCHHHHHhhceE
Confidence            999999999999986 3 8999999      8986 6788899983

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.89  E-value=5.2e-24  Score=203.32  Aligned_cols=155  Identities=13%  Similarity=0.158  Sum_probs=109.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe-ceEchhh--ccCCceeeEEEeecCC-cccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ-GFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~-g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++ |.++...  ...++.+||++|++.. ..+..+|+.+...
T Consensus       406 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~  485 (1466)
T PTZ00265        406 FTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLY  485 (1466)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCC
Confidence            5789999999999999999999999999999999999995 5665322  2345779999998732 2356666655321


Q ss_pred             CCC---------CC---------C--------------------------------cccceeeehhhhhhhccc------
Q 029421           77 ESY---------RW---------P--------------------------------TVGRYKVDVASFEAIALP------  100 (193)
Q Consensus        77 ~~~---------~~---------~--------------------------------~~~~~~~~~~~l~~~~l~------  100 (193)
                      ...         ..         .                                .........++++.+++.      
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~l  565 (1466)
T PTZ00265        486 SLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSAL  565 (1466)
T ss_pred             CccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhC
Confidence            000         00         0                                000001112222222221      


Q ss_pred             -------------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh--CCCcEEEEecCCCCCCC
Q 029421          101 -------------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE--SNIPVLASIPAPKSGRD  152 (193)
Q Consensus       101 -------------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~--~g~tvl~~~~~~~~tHd  152 (193)
                                   .++            ++.+|++|||||| ++||+.++..+.+.++.+.  .|.|+|++      +|+
T Consensus       566 p~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiI------sHr  639 (1466)
T PTZ00265        566 PDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII------AHR  639 (1466)
T ss_pred             ccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEE------eCC
Confidence                         111            8899999999999 6999999999999998885  38999999      999


Q ss_pred             hhHHHHHhcC
Q 029421          153 IPAVARLRNH  162 (193)
Q Consensus       153 ~~~~~~~~d~  162 (193)
                      +..+ +.||+
T Consensus       640 ls~i-~~aD~  648 (1466)
T PTZ00265        640 LSTI-RYANT  648 (1466)
T ss_pred             HHHH-HhCCE
Confidence            9877 57887

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.89  E-value=9.2e-24  Score=202.82  Aligned_cols=172  Identities=12%  Similarity=0.167  Sum_probs=122.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...  ...+++++++||++.-+ .+..+|+... ..
T Consensus      1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~ 1385 (1522)
T TIGR00957      1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQ 1385 (1522)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cC
Confidence            57999999999999999999999999999999999999999998543  34578899999998322 3555565321 00


Q ss_pred             CCCCCcccceeeehhhhhhhcc-----------c--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIAL-----------P--------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l-----------~--------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                         ...    +...++++..++           .        .++            ++.+|++|||||| +++|..+..
T Consensus      1386 ---~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~ 1458 (1522)
T TIGR00957      1386 ---YSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458 (1522)
T ss_pred             ---CCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence               000    001112221111           1        011            7899999999999 699999998


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHHHHHHHHHh
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNIYYQLTDAV  190 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~  190 (193)
                      .+.+.++...+++|||++      +|+++.+.. ||++    +|.+  ++.+++++|.++ ...+++.+
T Consensus      1459 ~Iq~~l~~~~~~~TvI~I------AHRl~ti~~-~DrIlVld~G~I--vE~G~~~eLl~~-~~~f~~l~ 1517 (1522)
T TIGR00957      1459 LIQSTIRTQFEDCTVLTI------AHRLNTIMD-YTRVIVLDKGEV--AEFGAPSNLLQQ-RGIFYSMA 1517 (1522)
T ss_pred             HHHHHHHHHcCCCEEEEE------ecCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhC-CCHHHHHH
Confidence            899988887678999999      999987764 7884    3444  344566777664 23444443

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.89  E-value=1.9e-23  Score=199.08  Aligned_cols=156  Identities=15%  Similarity=0.156  Sum_probs=115.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      +.|++|++++|+||||||||||||+|+|.++|+   +|+|.++|.+..+.. .++.++|++|+.  .+..++.+++.+..
T Consensus       186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~EtL~f~a  264 (1470)
T PLN03140        186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV-PRKTSAYISQNDVHVGVMTVKETLDFSA  264 (1470)
T ss_pred             EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc-ccceeEEecccccCCCcCcHHHHHHHHH
Confidence            468999999999999999999999999999998   999999998874332 256799999975  34556666654422


Q ss_pred             CCC--C-------CCCcccce------------------------eeehhhhhhhccccc-------------c------
Q 029421           76 PES--Y-------RWPTVGRY------------------------KVDVASFEAIALPEL-------------Q------  103 (193)
Q Consensus        76 ~~~--~-------~~~~~~~~------------------------~~~~~~l~~~~l~~~-------------~------  103 (193)
                      ...  .       .....++.                        ......++.+|+.+.             +      
T Consensus       265 ~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkR  344 (1470)
T PLN03140        265 RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKR  344 (1470)
T ss_pred             HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccccee
Confidence            100  0       00000000                        012345666666531             1      


Q ss_pred             ------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCCh-hHHHHHhcCC
Q 029421          104 ------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDI-PAVARLRNHP  163 (193)
Q Consensus       104 ------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~-~~~~~~~d~~  163 (193)
                            ++.+|+++++||| +|||+.++..+.+.++.+++  |.|+|++      +|+. +++..++|++
T Consensus       345 Vsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis------~Hqp~~~i~~lfD~v  408 (1470)
T PLN03140        345 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS------LLQPAPETFDLFDDI  408 (1470)
T ss_pred             eeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEE------ecCCCHHHHHHhheE
Confidence                  7899999999999 69999999999999998853  8999999      8885 5788999983

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.89  E-value=7.7e-24  Score=183.81  Aligned_cols=146  Identities=18%  Similarity=0.239  Sum_probs=101.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--cccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~   78 (193)
                      |++.+|+.+||+|+||||||||||+|+|.+.|++|+|...+         ..+++|++|++..  ..++++.+.......
T Consensus        24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~---------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~   94 (530)
T COG0488          24 LTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---------GLRVGYLSQEPPLDPEKTVLDYVIEGFGEL   94 (530)
T ss_pred             ceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC---------CceEEEeCCCCCcCCCccHHHHHHhhhHHH
Confidence            57899999999999999999999999999999999997643         3578999998732  223322211111000


Q ss_pred             CC-----------------------------CCcccceeeehhhhhhhcccc-------cc------------cCCCCCE
Q 029421           79 YR-----------------------------WPTVGRYKVDVASFEAIALPE-------LQ------------VGADTDL  110 (193)
Q Consensus        79 ~~-----------------------------~~~~~~~~~~~~~l~~~~l~~-------~~------------l~~~p~l  110 (193)
                      ..                             ...-.....+..++..+++..       ++            |+.+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDl  174 (530)
T COG0488          95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDL  174 (530)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCE
Confidence            00                             000000011223333344432       11            8899999


Q ss_pred             EEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          111 FVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       111 lllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |||||| +.||..+...+.+.++... | |||+|      |||-.++.++|+++
T Consensus       175 LLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiV------SHDR~FLd~V~t~I  220 (530)
T COG0488         175 LLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVV------SHDRYFLDNVATHI  220 (530)
T ss_pred             EEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEE------eCCHHHHHHHhhhe
Confidence            999999 5999999887777777543 5 99999      99999999999984

>PTZ00243 ABC transporter; Provisional

Probab=99.89  E-value=1.5e-23  Score=201.27  Aligned_cols=163  Identities=14%  Similarity=0.146  Sum_probs=118.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++..  ....++.++|+||++..+ .+..+|+..... 
T Consensus      1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~- 1409 (1560)
T PTZ00243       1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE- 1409 (1560)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccC-
Confidence            6799999999999999999999999999999999999999999853  345578899999998422 355566533110 


Q ss_pred             CCCCCcccceeeehhhhhhhcccc-------------------cc------------cCCC-CCEEEEecC-CCcccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE-------------------LQ------------VGAD-TDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~------------l~~~-p~llllDEp-~~LD~~~~  124 (193)
                         ..    .+...++++..++.+                   ++            ++.+ |++|||||| +++|+.+.
T Consensus      1410 ---~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243       1410 ---AS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred             ---CC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence               00    011112222222211                   11            6674 899999999 69999999


Q ss_pred             chHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          125 SFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       125 ~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      ..+.+.++...+++|||++      +|+++.+. .||++    +|.+  +..++.++|.+
T Consensus      1483 ~~Iq~~L~~~~~~~TvI~I------AHRl~ti~-~~DrIlVLd~G~V--vE~Gt~~eLl~ 1533 (1560)
T PTZ00243       1483 RQIQATVMSAFSAYTVITI------AHRLHTVA-QYDKIIVMDHGAV--AEMGSPRELVM 1533 (1560)
T ss_pred             HHHHHHHHHHCCCCEEEEE------eccHHHHH-hCCEEEEEECCEE--EEECCHHHHHh
Confidence            9999999887668999999      99998775 58884    2333  34456666654

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=3.7e-23  Score=153.75  Aligned_cols=156  Identities=15%  Similarity=0.101  Sum_probs=107.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE-----chhhc------cCCceeeEEEeecCCc--ccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY-----TGEIR------QGGQRVGFEVVTLDDR--RAP   67 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~-----~~~~~------~~~~~ig~~~q~~~~~--~~~   67 (193)
                      |++.+||+.+|+|+||||||||++||++-+.|++|+|.+.-.+     +....      ..+..-||+.|+|...  +.+
T Consensus        27 F~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~V  106 (258)
T COG4107          27 FDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQV  106 (258)
T ss_pred             eeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeee
Confidence            6789999999999999999999999999999999999885432     11111      1234568999987321  111


Q ss_pred             --cccccCCCCCCCCCCcccceeeehhhhhhhccccc---------------------ccCCCCCEEEEecC-CCccccc
Q 029421           68 --LASINASSPESYRWPTVGRYKVDVASFEAIALPEL---------------------QVGADTDLFVIDEV-GKMELFS  123 (193)
Q Consensus        68 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------------~l~~~p~llllDEp-~~LD~~~  123 (193)
                        -.|+.........+.--.......++++++.+...                     -+...|+++++||| +|||...
T Consensus       107 SAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSV  186 (258)
T COG4107         107 SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV  186 (258)
T ss_pred             ccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhh
Confidence              11211111000000000001223345555443311                     18899999999999 6999999


Q ss_pred             cchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          124 SSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       124 ~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +..+.++++.+. + |.+++++      |||+..+.-++++
T Consensus       187 QARLLDllrgLv~~l~la~viV------THDl~VarLla~r  221 (258)
T COG4107         187 QARLLDLLRGLVRELGLAVVIV------THDLAVARLLADR  221 (258)
T ss_pred             HHHHHHHHHHHHHhcCceEEEE------echhHHHHHhhhc
Confidence            999999999875 5 9999999      9999988888988

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.89  E-value=5.1e-23  Score=159.07  Aligned_cols=151  Identities=16%  Similarity=0.153  Sum_probs=94.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC---------CeEEeceEchhhccCCceeeEEEeecCCcccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP---------SLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G---------~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~   71 (193)
                      |++.+| +++|+||||||||||+++|+|++++..|         ++.+.|.+... ....++++|+||++..+.......
T Consensus        18 l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~vfq~~~~~~~~~~~~   95 (197)
T cd03278          18 IPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK-PANFAEVTLTFDNSDGRYSIISQG   95 (197)
T ss_pred             eecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC-CCceEEEEEEEEcCCCceeEEehh
Confidence            467889 9999999999999999999999876633         45555554422 223468999999874331110000


Q ss_pred             cCCCCCCCCCCc-ccc--eeeehhhhhhhccccccc----CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEE
Q 029421           72 NASSPESYRWPT-VGR--YKVDVASFEAIALPELQV----GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLAS  143 (193)
Q Consensus        72 ~~~~~~~~~~~~-~~~--~~~~~~~l~~~~l~~~~l----~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~  143 (193)
                      ..  ........ ...  .....-...++.+... +    ..+|+++++||| ++||+..+..+.++++.+.++.|||++
T Consensus        96 ~~--~~~l~~~~~~~~~~~~LS~G~kqrl~la~~-l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIii  172 (197)
T cd03278          96 DV--SEIIEAPGKKVQRLSLLSGGEKALTALALL-FAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVI  172 (197)
T ss_pred             hH--HHHHhCCCccccchhhcCHHHHHHHHHHHH-HHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEE
Confidence            00  00000000 000  0000000111111111 2    256799999999 699999999999999988668899999


Q ss_pred             ecCCCCCCChhHHHHHhcCC
Q 029421          144 IPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       144 ~~~~~~tHd~~~~~~~~d~~  163 (193)
                            ||+++.+ .+||++
T Consensus       173 ------tH~~~~~-~~~d~v  185 (197)
T cd03278         173 ------THRKGTM-EAADRL  185 (197)
T ss_pred             ------ECCHHHH-hhcceE
Confidence                  9998865 578874

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.88  E-value=7.4e-23  Score=196.22  Aligned_cols=162  Identities=15%  Similarity=0.210  Sum_probs=117.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++|+.+||+|+||||||||+++|+|+++ ++|+|.+||.++...  ...+++++|+||++..+ .+..+|+..... 
T Consensus      1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~- 1317 (1490)
T TIGR01271      1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQ- 1317 (1490)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccC-
Confidence            5799999999999999999999999999997 789999999998543  34578899999998422 355556532110 


Q ss_pred             CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                         ..    .....++++.+++.                   .++            ++.+|++|||||| +++|+.+..
T Consensus      1318 ---~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~ 1390 (1490)
T TIGR01271      1318 ---WS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390 (1490)
T ss_pred             ---CC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence               00    01111222222211                   011            8899999999999 699999998


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.+.++...+++|||++      +|+++.+.. ||++    +|.++  ..+++++|.+
T Consensus      1391 ~I~~~L~~~~~~~TvI~I------aHRl~ti~~-~DrIlvL~~G~iv--E~g~p~~Ll~ 1440 (1490)
T TIGR01271      1391 IIRKTLKQSFSNCTVILS------EHRVEALLE-CQQFLVIEGSSVK--QYDSIQKLLN 1440 (1490)
T ss_pred             HHHHHHHHHcCCCEEEEE------ecCHHHHHh-CCEEEEEECCEEE--EeCCHHHHHc
Confidence            899999887678999999      999987764 8884    34443  3345566654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=4e-23  Score=152.84  Aligned_cols=156  Identities=16%  Similarity=0.231  Sum_probs=112.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc---------hhhc-cCCceeeEEEeec--CCccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT---------GEIR-QGGQRVGFEVVTL--DDRRAPL   68 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~---------~~~~-~~~~~ig~~~q~~--~~~~~~~   68 (193)
                      |+++.||+++|-||||||||||||++-|-+.|++|+|++....-         ++.- -.++.+||+.|..  .+....+
T Consensus        32 lsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL  111 (235)
T COG4778          32 LSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL  111 (235)
T ss_pred             EEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH
Confidence            67899999999999999999999999999999999999854331         1111 1246789998854  3333333


Q ss_pred             ccccCCCCCCCCCCcccceeeehhhhhhhcccccc---------------------cCCCCCEEEEecC-CCccccccch
Q 029421           69 ASINASSPESYRWPTVGRYKVDVASFEAIALPELQ---------------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---------------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      +....+.. ...++...........+.++++.+..                     ++.+-++|+|||| ++||..++..
T Consensus       112 dVvaePll-~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~v  190 (235)
T COG4778         112 DVVAEPLL-ARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAV  190 (235)
T ss_pred             HHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHH
Confidence            32221111 11222222333445566666655321                     7788999999999 5999999999


Q ss_pred             HHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          127 FPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       127 ~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+++...+. |.+++-+      -||-+.-+.+|||.
T Consensus       191 Vveli~e~Ka~GaAlvGI------FHDeevre~vadR~  222 (235)
T COG4778         191 VVELIREAKARGAALVGI------FHDEEVREAVADRL  222 (235)
T ss_pred             HHHHHHHHHhcCceEEEe------eccHHHHHHHhhhe
Confidence            9999999877 9999999      89977778889983

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.86  E-value=5.1e-22  Score=172.47  Aligned_cols=138  Identities=19%  Similarity=0.269  Sum_probs=98.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC---cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD---RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~---~~~~~~~~~~~~~~   77 (193)
                      |.|.+|+.++|+||||+|||||||+|+|.+.|.+|+|.+.-         .-++||..|+...   ..++++++.-....
T Consensus       343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~---------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~  413 (530)
T COG0488         343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE---------TVKIGYFDQHRDELDPDKTVLEELSEGFPD  413 (530)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC---------ceEEEEEEehhhhcCccCcHHHHHHhhCcc
Confidence            57899999999999999999999999999999999987632         3468999997622   12233322111100


Q ss_pred             CCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      .       ........+.++++..         ++            ++.+|.+|||||| +.||..+...+.+.+..+ 
T Consensus       414 ~-------~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-  485 (530)
T COG0488         414 G-------DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-  485 (530)
T ss_pred             c-------cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-
Confidence            0       0112223344444321         11            6789999999999 599999877666666555 


Q ss_pred             CCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          136 SNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                       .-|||+|      |||..++.++|++
T Consensus       486 -~Gtvl~V------SHDr~Fl~~va~~  505 (530)
T COG0488         486 -EGTVLLV------SHDRYFLDRVATR  505 (530)
T ss_pred             -CCeEEEE------eCCHHHHHhhcce
Confidence             5699999      9999999999987

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=4e-22  Score=182.79  Aligned_cols=166  Identities=13%  Similarity=0.148  Sum_probs=124.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++|+.+||+|||||||||.+.+|-..+.|++|.|.+||.++..  .+..|+++|.|.|+|..+ .+..+|+.+....
T Consensus      1011 l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1011 LSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence            5789999999999999999999999999999999999999999853  445678999999998433 4566776665211


Q ss_pred             CCCCCcccceeeehhhhhhhcccc-------------------------------cccCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE-------------------------------LQVGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------------------~~l~~~p~llllDEp-~~LD~~~~~  125 (193)
                       .      ......++++..+..+                               .+++.||++|||||. ++||.++.+
T Consensus      1091 -v------s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1091 -V------SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred             -C------CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence             0      0111112221111100                               018899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcE--EEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGAT--IFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~--~~~~~~~~~~~l~~  180 (193)
                      .+++.++....|.|+|++      .|.+..+. -||.+.+.  -.+++.++.++|.+
T Consensus      1164 vVQeALd~a~~gRT~IvI------AHRLSTIq-naD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1164 VVQEALDRAMEGRTTIVI------AHRLSTIQ-NADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred             HHHHHHHHhhcCCcEEEE------ecchhhhh-cCCEEEEEECCEEEecccHHHHHh
Confidence            999999999889999999      99988775 47874321  13566778887776

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.8e-22  Score=166.13  Aligned_cols=161  Identities=15%  Similarity=0.180  Sum_probs=108.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hhccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EIRQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      ++|++||++.|+|.||||||||++++.|+++|++|+|.+||+++.  ...+.|+-++-+|.+..  +..-..++  ..  
T Consensus       344 l~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~--~a--  419 (546)
T COG4615         344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG--KA--  419 (546)
T ss_pred             eEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc--CC--
Confidence            478999999999999999999999999999999999999999874  23344444555554431  11100010  00  


Q ss_pred             CCCCCCcccceeeehhhhhhhcccc-------------------------cccCCCCCEEEEecC-CCccccccchHH-H
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPE-------------------------LQVGADTDLFVIDEV-GKMELFSSSFFP-A  129 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~-------------------------~~l~~~p~llllDEp-~~LD~~~~~~~~-~  129 (193)
                               ..+.+..+++++.+.+                         ..++.+-+++++||= +--||.-|..++ .
T Consensus       420 ---------s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~  490 (546)
T COG4615         420 ---------SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV  490 (546)
T ss_pred             ---------ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence                     0011112222222111                         116789999999999 699999987655 5


Q ss_pred             HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC----CCcEEEEeCCCChhHHHHH
Q 029421          130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNH----PGATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~----~~~~~~~~~~~~~~~l~~~  181 (193)
                      ++-.+++ |+||+.+      |||- ---..|||    .+|++...++.++.+....
T Consensus       491 lLp~LK~qGKTI~aI------sHDd-~YF~~ADrll~~~~G~~~e~tge~~~etA~~  540 (546)
T COG4615         491 LLPLLKEQGKTIFAI------SHDD-HYFIHADRLLEMRNGQLSELTGEERDETARD  540 (546)
T ss_pred             HhHHHHHhCCeEEEE------ecCc-hhhhhHHHHHHHhcCceeeccccccchhhhh
Confidence            5667777 9999999      8873 33345666    5788888877776654443

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.86  E-value=5.4e-22  Score=147.58  Aligned_cols=148  Identities=18%  Similarity=0.238  Sum_probs=99.7

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINASSPE   77 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~   77 (193)
                      ++..||++-++||||||||||+-.++|+++- +|+|.++|.+...  .....+.-+|..|+..  ..+.++..+.+..+.
T Consensus        21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~-sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~   99 (248)
T COG4138          21 EVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD   99 (248)
T ss_pred             ccccceEEEEECCCCccHHHHHHHHhCCCCC-CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch
Confidence            5788999999999999999999999999654 7999999998732  2222334456665432  122333322221111


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc---------------------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ---------------------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~---------------------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                            ........+....+++.+..                           +-...+++++||| ++||...+..+..
T Consensus       100 ------~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr  173 (248)
T COG4138         100 ------KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR  173 (248)
T ss_pred             ------HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence                  00001111122222222110                           3345579999999 7999998888999


Q ss_pred             HHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          130 VLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       130 ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ++..++. |.+|||+      +||++--.+.||+
T Consensus       174 ll~~~c~~G~~vims------~HDLNhTLrhA~~  201 (248)
T COG4138         174 LLSALCQQGLAIVMS------SHDLNHTLRHAHR  201 (248)
T ss_pred             HHHHHHhCCcEEEEe------ccchhhHHHHHHH
Confidence            9999887 9999999      9999988888887

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.85  E-value=3.1e-22  Score=183.85  Aligned_cols=145  Identities=18%  Similarity=0.216  Sum_probs=109.9

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcc--cCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCC-
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK--ASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPE-   77 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~-   77 (193)
                      +.+|..+||+|+|||||||||++|+|-..  -.+|+|.++|.+..+ ...++.+||+-|+.  .+..++.+.+.+.... 
T Consensus       814 ~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q-~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LR  892 (1391)
T KOG0065|consen  814 FKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ-ETFARVSGYVEQQDIHSPELTVRESLRFSAALR  892 (1391)
T ss_pred             ecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch-hhhccccceeecccccCcccchHHHHHHHHHHc
Confidence            57999999999999999999999999753  246899999998764 34577899999875  3456666665543311 


Q ss_pred             -CCCCCcccceeeehhhhhhhcccccc------------------------cCCCC-CEEEEecC-CCccccccchHHHH
Q 029421           78 -SYRWPTVGRYKVDVASFEAIALPELQ------------------------VGADT-DLFVIDEV-GKMELFSSSFFPAV  130 (193)
Q Consensus        78 -~~~~~~~~~~~~~~~~l~~~~l~~~~------------------------l~~~p-~llllDEp-~~LD~~~~~~~~~l  130 (193)
                       ....+..++.+.+.+.++.++|.+++                        |+.+| .+|+|||| +|||..+...+..+
T Consensus       893 lp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~  972 (1391)
T KOG0065|consen  893 LPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRF  972 (1391)
T ss_pred             CCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHH
Confidence             11112223334455666666665432                        88999 89999999 69999999999999


Q ss_pred             HHHHhC-CCcEEEEecCCC
Q 029421          131 LRILES-NIPVLASIPAPK  148 (193)
Q Consensus       131 l~~l~~-g~tvl~~~~~~~  148 (193)
                      ++.++. |.|||.+||.|+
T Consensus       973 lrkla~tGqtIlCTIHQPS  991 (1391)
T KOG0065|consen  973 LRKLADTGQTILCTIHQPS  991 (1391)
T ss_pred             HHHHHhcCCeEEEEecCCc
Confidence            999987 999999988775

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.85  E-value=8.2e-22  Score=189.07  Aligned_cols=145  Identities=19%  Similarity=0.164  Sum_probs=101.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|           .++|++|++.. ..+..+|+.+......
T Consensus       447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-----------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~  515 (1490)
T TIGR01271       447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-----------RISFSPQTSWIMPGTIKDNIIFGLSYDE  515 (1490)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-----------EEEEEeCCCccCCccHHHHHHhccccch
Confidence            57899999999999999999999999999999999999987           48999998721 2366677654321100


Q ss_pred             CCCccccee-eehhhhhhhcc----------cccc------------cCCCCCEEEEecC-CCccccccchHHH-HHHHH
Q 029421           80 RWPTVGRYK-VDVASFEAIAL----------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA-VLRIL  134 (193)
Q Consensus        80 ~~~~~~~~~-~~~~~l~~~~l----------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~-ll~~l  134 (193)
                      .+....... ...+.++.+..          ..++            +..+|+++||||| ++||+..+..+.+ ++..+
T Consensus       516 ~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~  595 (1490)
T TIGR01271       516 YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL  595 (1490)
T ss_pred             HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            000000000 00111111110          0111            7799999999999 7999999877765 55665


Q ss_pred             hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+|+|+|++      ||++..+. .||++
T Consensus       596 ~~~~tvilv------tH~~~~~~-~ad~i  617 (1490)
T TIGR01271       596 MSNKTRILV------TSKLEHLK-KADKI  617 (1490)
T ss_pred             hcCCeEEEE------eCChHHHH-hCCEE
Confidence            568999999      99998875 48873

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.85  E-value=1.4e-22  Score=147.41  Aligned_cols=61  Identities=23%  Similarity=0.397  Sum_probs=54.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTL   61 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~   61 (193)
                      |+|++|++++|+|+||||||||+++|+|..+|++|+|.++|.++..  ....++.++|++|+.
T Consensus         6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (137)
T PF00005_consen    6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDP   68 (137)
T ss_dssp             EEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSH
T ss_pred             EEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999999999999999999999999999999854  334467899999974

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PLN03073 ABC transporter F family; Provisional

Probab=99.85  E-value=1.1e-21  Score=176.45  Aligned_cols=153  Identities=9%  Similarity=0.061  Sum_probs=96.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc---ccCCCCeEEeceEch-----h-------h----ccCCceeeEEEeec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL---KASNPSLKVQGFYTG-----E-------I----RQGGQRVGFEVVTL   61 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~---~~~~G~i~~~g~~~~-----~-------~----~~~~~~ig~~~q~~   61 (193)
                      |+|.+|+++||+||||||||||||+|+|..   .|++|+|.+.++...     .       .    ....+.++|++|.+
T Consensus       198 l~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~  277 (718)
T PLN03073        198 VTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQR  277 (718)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999999864   578899976554320     0       0    00112345555543


Q ss_pred             CCc-ccccccccCCCCCCCCCCcc-------------------cceeeehhhhhhhccc---------ccc---------
Q 029421           62 DDR-RAPLASINASSPESYRWPTV-------------------GRYKVDVASFEAIALP---------ELQ---------  103 (193)
Q Consensus        62 ~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~l~---------~~~---------  103 (193)
                      ... .....+.....  ....+..                   ....+..+.+..+++.         .++         
T Consensus       278 ~l~~~~~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~L  355 (718)
T PLN03073        278 ELEFETETGKGKGAN--KDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIAL  355 (718)
T ss_pred             Hhhhccccccccccc--ccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHH
Confidence            110 01111100000  0000000                   0011222344444542         111         


Q ss_pred             ---cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          104 ---VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       104 ---l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                         ++.+|++|||||| ++||+.++..+.++++.+  +.|||++      |||..++..+||++
T Consensus       356 A~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviiv------sHd~~~l~~~~d~i  411 (718)
T PLN03073        356 ARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVV------SHAREFLNTVVTDI  411 (718)
T ss_pred             HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEE------ECCHHHHHHhCCEE
Confidence               7899999999999 699999988888888765  6899999      99999999999983

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.84  E-value=5.2e-21  Score=183.98  Aligned_cols=139  Identities=14%  Similarity=0.185  Sum_probs=99.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|           .++|++|++. ...+..+|+.+....  
T Consensus       659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv~Q~~~l~~~Ti~eNI~~g~~~--  725 (1522)
T TIGR00957       659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-----------SVAYVPQQAWIQNDSLRENILFGKAL--  725 (1522)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----------EEEEEcCCccccCCcHHHHhhcCCcc--
Confidence            57899999999999999999999999999999999999876           5899999872 234566665543211  


Q ss_pred             CCCcccceeeeh------hhhhhh--cc--------ccc------------ccCCCCCEEEEecC-CCccccccchHHHH
Q 029421           80 RWPTVGRYKVDV------ASFEAI--AL--------PEL------------QVGADTDLFVIDEV-GKMELFSSSFFPAV  130 (193)
Q Consensus        80 ~~~~~~~~~~~~------~~l~~~--~l--------~~~------------~l~~~p~llllDEp-~~LD~~~~~~~~~l  130 (193)
                        . ...+....      +.++.+  |.        ..+            ++..+|++++|||| ++||+.....+.+.
T Consensus       726 --~-~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~  802 (1522)
T TIGR00957       726 --N-EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEH  802 (1522)
T ss_pred             --C-HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence              0 00111000      111111  00        011            17899999999999 79999998777666


Q ss_pred             HHH---HhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          131 LRI---LESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       131 l~~---l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +..   +.+|+|+|++      ||+++.+.. ||+
T Consensus       803 l~~~~~~~~~~tvIlv------TH~~~~l~~-~D~  830 (1522)
T TIGR00957       803 VIGPEGVLKNKTRILV------THGISYLPQ-VDV  830 (1522)
T ss_pred             HhhhhhhhcCCEEEEE------eCChhhhhh-CCE
Confidence            643   3348999999      999987765 887

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.83  E-value=1.7e-20  Score=150.05  Aligned_cols=151  Identities=12%  Similarity=0.111  Sum_probs=98.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEece-Echhh----ccCCceeeEEEeecCC-----------ccccc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGF-YTGEI----RQGGQRVGFEVVTLDD-----------RRAPL   68 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~-~~~~~----~~~~~~ig~~~q~~~~-----------~~~~~   68 (193)
                      ..+++|+||||||||||+++|++++.++ .|++++.+. +....    .....++++++|++..           ..++.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            4589999999999999999999999886 457887765 32111    1223578899997521           12222


Q ss_pred             ccccCCCCCCCCCC-cccceeeehhhhhhhccc--------------------c--------cc------------cC--
Q 029421           69 ASINASSPESYRWP-TVGRYKVDVASFEAIALP--------------------E--------LQ------------VG--  105 (193)
Q Consensus        69 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~--------------------~--------~~------------l~--  105 (193)
                      .++........... .........+.++.+++.                    .        ++            ++  
T Consensus       105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~  184 (251)
T cd03273         105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL  184 (251)
T ss_pred             EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence            22222111000000 111112334556666653                    0        11            32  


Q ss_pred             --CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          106 --ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       106 --~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                        .+|+++++||| ++||+..+..+.++++.+.+|.++|++      ||+ .++.+.||++
T Consensus       185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~i------SH~-~~~~~~~d~v  238 (251)
T cd03273         185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVV------SLK-EGMFNNANVL  238 (251)
T ss_pred             hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE------ECC-HHHHHhCCEE
Confidence              57899999999 699999999999999888668899999      999 5666679884

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PTZ00243 ABC transporter; Provisional

Probab=99.82  E-value=7.9e-21  Score=182.74  Aligned_cols=145  Identities=15%  Similarity=0.144  Sum_probs=97.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.+.           .+++|++|++. ...+..+|+.+......
T Consensus       681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~  749 (1560)
T PTZ00243        681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----------RSIAYVPQQAWIMNATVRGNILFFDEEDA  749 (1560)
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------CeEEEEeCCCccCCCcHHHHHHcCChhhH
Confidence            5789999999999999999999999999999999999752           46999999872 22355666544221000


Q ss_pred             CCCcc-cceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHH-HHHHHH
Q 029421           80 RWPTV-GRYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFP-AVLRIL  134 (193)
Q Consensus        80 ~~~~~-~~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~-~ll~~l  134 (193)
                      ..... -......+.++.+  |+.        .++            +..+|+++||||| ++||+.....+. .++...
T Consensus       750 ~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~  829 (1560)
T PTZ00243        750 ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA  829 (1560)
T ss_pred             HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh
Confidence            00000 0000001112222  111        111            7899999999999 799998865544 444433


Q ss_pred             hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+|+|+|++      ||+++.+ ..||++
T Consensus       830 ~~~~TvIlv------TH~~~~~-~~ad~i  851 (1560)
T PTZ00243        830 LAGKTRVLA------THQVHVV-PRADYV  851 (1560)
T ss_pred             hCCCEEEEE------eCCHHHH-HhCCEE
Confidence            358999999      9999877 468883

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.82  E-value=9.1e-21  Score=159.74  Aligned_cols=174  Identities=13%  Similarity=0.194  Sum_probs=117.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++.+|+.++|+||||+||||+||++......++|.|.+||+++...  ...+..||.+||+... ..+.+.|+.+....
T Consensus       559 F~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~  638 (790)
T KOG0056|consen  559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS  638 (790)
T ss_pred             EEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCC
Confidence            67899999999999999999999999999999999999999998543  3456789999998622 23445555443321


Q ss_pred             CCCCCc--ccc-eeeehhhh-------hhhccccc--------------ccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           78 SYRWPT--VGR-YKVDVASF-------EAIALPEL--------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        78 ~~~~~~--~~~-~~~~~~~l-------~~~~l~~~--------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ......  ..+ .......+       .++|-..+              .++.+|.+++|||. ++||......+++.+.
T Consensus       639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~  718 (790)
T KOG0056|consen  639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALA  718 (790)
T ss_pred             CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHH
Confidence            110000  000 00000000       11221111              17899999999999 6999999999999999


Q ss_pred             HHhCCCcEEEEecCCCCCCChhHHHHHhcCCCc--EEEEeCCCChhHHHHH
Q 029421          133 ILESNIPVLASIPAPKSGRDIPAVARLRNHPGA--TIFTLSPGNRDSLKDN  181 (193)
Q Consensus       133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~--~~~~~~~~~~~~l~~~  181 (193)
                      .++.+.|-|++      .|.+..+.. ||.+-+  ....++.++.+++.++
T Consensus       719 rlca~RTtIVv------AHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~r  762 (790)
T KOG0056|consen  719 RLCANRTTIVV------AHRLSTIVN-ADLILVISNGRIVERGRHEELLKR  762 (790)
T ss_pred             HHhcCCceEEE------eeeehheec-ccEEEEEeCCeEeecCcHHHHHhc
Confidence            99987777777      788776643 454210  1124566777777766

>PLN03130 ABC transporter C family member; Provisional

Probab=99.81  E-value=4.4e-20  Score=178.00  Aligned_cols=140  Identities=15%  Similarity=0.210  Sum_probs=99.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC-CCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN-PSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~-G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+           +..++|++|++. ...+..+|+.+.....
T Consensus       638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-----------~~~Iayv~Q~p~LfngTIreNI~fg~~~d  706 (1622)
T PLN03130        638 LDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-----------RGTVAYVPQVSWIFNATVRDNILFGSPFD  706 (1622)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------cCeEEEEcCccccCCCCHHHHHhCCCccc
Confidence            5789999999999999999999999999999999 89875           347999999983 2346677766543210


Q ss_pred             CCCCcccceeeeh------hhhhhh--ccc--------cc------------ccCCCCCEEEEecC-CCccccccc-hHH
Q 029421           79 YRWPTVGRYKVDV------ASFEAI--ALP--------EL------------QVGADTDLFVIDEV-GKMELFSSS-FFP  128 (193)
Q Consensus        79 ~~~~~~~~~~~~~------~~l~~~--~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~-~~~  128 (193)
                           .+.+..+.      +.++.+  |..        .+            ++..+|+++||||| ++||+...+ .+.
T Consensus       707 -----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~  781 (1622)
T PLN03130        707 -----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD  781 (1622)
T ss_pred             -----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence                 01111110      111111  000        01            17899999999999 799998765 456


Q ss_pred             HHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+.+|+|+|++      ||++..+ ..||++
T Consensus       782 ~~l~~~l~~kTvIlV------TH~l~~l-~~aD~I  809 (1622)
T PLN03130        782 KCIKDELRGKTRVLV------TNQLHFL-SQVDRI  809 (1622)
T ss_pred             HHhhHHhcCCEEEEE------ECCHhHH-HhCCEE
Confidence            677665568999999      9998765 458873

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.81  E-value=1.3e-20  Score=148.49  Aligned_cols=53  Identities=23%  Similarity=0.292  Sum_probs=46.2

Q ss_pred             cCCCC--CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          104 VGADT--DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       104 l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++.+|  +++|+||| ++||+..+..+.++++.+++ |.|+|++      |||++++ .+||++
T Consensus       152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~i------tH~~~~~-~~~d~i  208 (226)
T cd03270         152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVV------EHDEDTI-RAADHV  208 (226)
T ss_pred             HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEE------EeCHHHH-HhCCEE
Confidence            66777  69999999 69999999999999988865 9999999      9999876 588873

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.81  E-value=2.9e-20  Score=158.85  Aligned_cols=157  Identities=14%  Similarity=0.162  Sum_probs=117.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---hccCCceeeEEEeec-----CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---IRQGGQRVGFEVVTL-----DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~-----~~~~~~~~~~~   72 (193)
                      |++.+||+++|.|--|||+|-|+++|.|..++++|+|.++|+++..   ....+..++|+|.+-     ....+..+|+.
T Consensus       280 f~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~  359 (500)
T COG1129         280 FTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENIT  359 (500)
T ss_pred             eEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHhee
Confidence            6899999999999999999999999999999999999999998632   223345789998765     23345556655


Q ss_pred             CCCC-CCCC--C-Ccccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecCC-Cccccccch
Q 029421           73 ASSP-ESYR--W-PTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEVG-KMELFSSSF  126 (193)
Q Consensus        73 ~~~~-~~~~--~-~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp~-~LD~~~~~~  126 (193)
                      +... ....  + ..........++.+.+.+..         ++            |..+|++||||||+ |+|..++.+
T Consensus       360 l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~e  439 (500)
T COG1129         360 LASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE  439 (500)
T ss_pred             hHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHH
Confidence            5421 1111  1 11111122333444444332         11            88999999999996 999999999


Q ss_pred             HHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          127 FPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       127 ~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++.+++.+++ |++||++      |-+++++..+|||+
T Consensus       440 Iy~li~~lA~~G~ail~i------SSElpEll~~~DRI  471 (500)
T COG1129         440 IYRLIRELAAEGKAILMI------SSELPELLGLSDRI  471 (500)
T ss_pred             HHHHHHHHHHCCCEEEEE------eCChHHHHhhCCEE
Confidence            9999999987 9999999      99999999999995

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.81  E-value=2.7e-20  Score=144.62  Aligned_cols=150  Identities=15%  Similarity=0.152  Sum_probs=91.6

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHH----hhcccCCCCeEEeceEchhhccCCceeeEEEeec-CCccc------cccc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVL----ESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DDRRA------PLAS   70 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~----gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~-~~~~~------~~~~   70 (193)
                      ++.+| +++|+||||||||||+++|.    |..+|++|.+..+. ...........++++||+. ...+.      .+++
T Consensus        19 ~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~-~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~   96 (204)
T cd03240          19 EFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP-KLIREGEVRAQVKLAFENANGKKYTITRSLAILEN   96 (204)
T ss_pred             ecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchH-HHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhc
Confidence            46677 99999999999999999995    87788777665211 1111223456788888876 22222      2222


Q ss_pred             ccCCCCCCCCCCcccce--eeehhhhhh------hcccccccCCCCCEEEEecC-CCccccccc-hHHHHHHHHhC--CC
Q 029421           71 INASSPESYRWPTVGRY--KVDVASFEA------IALPELQVGADTDLFVIDEV-GKMELFSSS-FFPAVLRILES--NI  138 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~~~--~~~~~~l~~------~~l~~~~l~~~p~llllDEp-~~LD~~~~~-~~~~ll~~l~~--g~  138 (193)
                      +.+........ .....  ..-.....+      +.+. ..++.+|+++++||| ++||+..+. .+.+++..+++  |.
T Consensus        97 ~~~~~~~~~~~-~~~~~~~~LS~G~~~~~~la~rlala-~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~  174 (204)
T cd03240          97 VIFCHQGESNW-PLLDMRGRCSGGEKVLASLIIRLALA-ETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF  174 (204)
T ss_pred             eeeechHHHHH-HHhcCccccCccHHHHHHHHHHHHHH-HHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCC
Confidence            21110000000 00000  000000011      1111 125789999999999 699999998 99999988764  88


Q ss_pred             cEEEEecCCCCCCChhHHHHHhcC
Q 029421          139 PVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       139 tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +||++      ||+.+.+ ..||+
T Consensus       175 ~iiii------tH~~~~~-~~~d~  191 (204)
T cd03240         175 QLIVI------THDEELV-DAADH  191 (204)
T ss_pred             EEEEE------EecHHHH-hhCCE
Confidence            99999      9997765 46775

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.81  E-value=5.9e-20  Score=176.54  Aligned_cols=140  Identities=15%  Similarity=0.169  Sum_probs=98.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|+.++|+||+|||||||+++|+|.++|++|.+.          ..+..++|++|++. ...+..+|+.+....  
T Consensus       638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~--  705 (1495)
T PLN03232        638 LEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------VIRGSVAYVPQVSWIFNATVRENILFGSDF--  705 (1495)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------EecCcEEEEcCccccccccHHHHhhcCCcc--
Confidence            57899999999999999999999999999999998763          12557999999983 234667776654321  


Q ss_pred             CCCcccceeeeh------hhhhhh--ccc--------cc------------ccCCCCCEEEEecC-CCccccccc-hHHH
Q 029421           80 RWPTVGRYKVDV------ASFEAI--ALP--------EL------------QVGADTDLFVIDEV-GKMELFSSS-FFPA  129 (193)
Q Consensus        80 ~~~~~~~~~~~~------~~l~~~--~l~--------~~------------~l~~~p~llllDEp-~~LD~~~~~-~~~~  129 (193)
                         ..+.+..+.      +.++.+  |..        .+            ++..+|+++||||| ++||+...+ .+.+
T Consensus       706 ---~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~  782 (1495)
T PLN03232        706 ---ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS  782 (1495)
T ss_pred             ---CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence               001111110      111111  000        01            17899999999999 799999875 4456


Q ss_pred             HHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       130 ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +++...+|+|+|++      ||++..+ ..||+
T Consensus       783 ~l~~~l~~kT~Ilv------TH~~~~l-~~aD~  808 (1495)
T PLN03232        783 CMKDELKGKTRVLV------TNQLHFL-PLMDR  808 (1495)
T ss_pred             HhhhhhcCCEEEEE------ECChhhH-HhCCE
Confidence            66655568999999      9998765 46887

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.80  E-value=1.3e-19  Score=140.28  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=80.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      +++..|++++|+||||||||||+|+|+|...     +...|.++...       .+++|..  ....+..+++.....  
T Consensus        20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~-------~~~~q~~~l~~~~~~~d~l~~~~s--   85 (199)
T cd03283          20 IDMEKKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS-------SFELPPVKIFTSIRVSDDLRDGIS--   85 (199)
T ss_pred             EEEcCCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC-------ccCcccceEEEeccchhccccccC--
Confidence            3577899999999999999999999998753     12244433211       1233311  112222333222110  


Q ss_pred             CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~~  155 (193)
                        ... .......+.++.++.      .+|+++|+||| +|+|+..+..+ ..+++.+.+ |.++|++      ||+.+.
T Consensus        86 --~~~-~e~~~~~~iL~~~~~------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiiv------TH~~~~  150 (199)
T cd03283          86 --YFY-AELRRLKEIVEKAKK------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIS------THDLEL  150 (199)
T ss_pred             --hHH-HHHHHHHHHHHhccC------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE------cCcHHH
Confidence              000 011223344444432      58999999999 69999987644 567777766 8999999      999988


Q ss_pred             HHHH
Q 029421          156 VARL  159 (193)
Q Consensus       156 ~~~~  159 (193)
                      +..+
T Consensus       151 ~~~~  154 (199)
T cd03283         151 ADLL  154 (199)
T ss_pred             HHhh
Confidence            7665

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.79  E-value=1e-19  Score=142.16  Aligned_cols=152  Identities=16%  Similarity=0.137  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc-ccCCCCeEEec-eEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCC
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL-KASNPSLKVQG-FYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWP   82 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~-~~~~G~i~~~g-~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~   82 (193)
                      +|++++|+||||||||||+++|++.+ -+..+....+. ............++++||.......................
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~  106 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV  106 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh
Confidence            47899999999999999999999644 33334333221 01111123345688888876322221111101000000000


Q ss_pred             --cccce-e--------eehhhhhhhcccccccC----------CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCc
Q 029421           83 --TVGRY-K--------VDVASFEAIALPELQVG----------ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIP  139 (193)
Q Consensus        83 --~~~~~-~--------~~~~~l~~~~l~~~~l~----------~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~t  139 (193)
                        ..... .        .......++.+.. .++          .+|+++++||| +++|+..+..+.++++.+++ |.|
T Consensus       107 ~l~~g~l~~~l~~~~~~lS~G~~~r~~la~-al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~t  185 (213)
T cd03279         107 LLPQGEFDRFLARPVSTLSGGETFLASLSL-ALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM  185 (213)
T ss_pred             hhhhcchHHHhcCCccccCHHHHHHHHHHH-HHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence              00000 0        0000001111110 132          36899999999 69999999989999988876 899


Q ss_pred             EEEEecCCCCCCChhHHHHHhcCC
Q 029421          140 VLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       140 vl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ||++      ||+.+.+..+|+++
T Consensus       186 ii~i------tH~~~~~~~~~~~i  203 (213)
T cd03279         186 VGVI------SHVEELKERIPQRL  203 (213)
T ss_pred             EEEE------ECchHHHHhhCcEE
Confidence            9999      99999898888873

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=1.8e-19  Score=143.21  Aligned_cols=51  Identities=8%  Similarity=0.243  Sum_probs=43.1

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+|+++++||| ++||+.++..+.+.++.+.++.++|++      +|+ .++.++||++
T Consensus       179 ~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~------~h~-~~~~~~~d~i  230 (243)
T cd03272         179 DPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITT------TFR-PELLEVADKF  230 (243)
T ss_pred             CCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEE------ecC-HHHHhhCCEE
Confidence            46899999999 699999999999999888667788888      787 4577899984

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.77  E-value=5e-19  Score=135.45  Aligned_cols=161  Identities=14%  Similarity=0.198  Sum_probs=111.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc----CCCCeEEeceEchh------hccCCceeeEEEeecCCccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA----SNPSLKVQGFYTGE------IRQGGQRVGFEVVTLDDRRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~----~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~~~~~~~~~~   70 (193)
                      +++++||+-+|+|.||||||-..|.|+|..+-    +....++++.+.-.      .+..++.++++||++..-..+-+.
T Consensus        28 ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~  107 (330)
T COG4170          28 MTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER  107 (330)
T ss_pred             eeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHH
Confidence            47889999999999999999999999998753    34456666665421      112346778999987211111111


Q ss_pred             c------cCCCCCC--CCCCcc-cceeeehhhhhhhccccc-----------------------ccCCCCCEEEEecC-C
Q 029421           71 I------NASSPES--YRWPTV-GRYKVDVASFEAIALPEL-----------------------QVGADTDLFVIDEV-G  117 (193)
Q Consensus        71 ~------~~~~~~~--~~~~~~-~~~~~~~~~l~~~~l~~~-----------------------~l~~~p~llllDEp-~  117 (193)
                      +      ..+...+  ..|... .+.+++.+.+-++|+.+-                       +++.+|++||.||| +
T Consensus       108 iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN  187 (330)
T COG4170         108 VGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTN  187 (330)
T ss_pred             HHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCc
Confidence            0      1111111  111111 122445566667766432                       17889999999999 5


Q ss_pred             CccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEE
Q 029421          118 KMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATI  167 (193)
Q Consensus       118 ~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~  167 (193)
                      .+|+..+.++..++..+.+  |.||+++      +||+..+.+.||++++.+
T Consensus       188 ~~e~~Tq~QifRLLs~mNQn~~TtILL~------s~Dl~~is~W~d~i~VlY  233 (330)
T COG4170         188 SMEPTTQAQIFRLLSRLNQNSNTTILLI------SHDLQMISQWADKINVLY  233 (330)
T ss_pred             ccCccHHHHHHHHHHHhhccCCceEEEE------cccHHHHHHHhhheEEEE
Confidence            9999999999999999875  8999999      999999999999975443

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.77  E-value=8.1e-19  Score=149.22  Aligned_cols=163  Identities=13%  Similarity=0.186  Sum_probs=100.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC----cccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD----RRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~----~~~~~~~~~~~~~   76 (193)
                      |-|+.++.++++||||+|||||||++.|.+.|+.|.|.-.-         .-.+++.-|+...    ..++.++..   .
T Consensus       411 fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~---------H~~~~~y~Qh~~e~ldl~~s~le~~~---~  478 (614)
T KOG0927|consen  411 FGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS---------HNKLPRYNQHLAEQLDLDKSSLEFMM---P  478 (614)
T ss_pred             cccCcccceeEecCCCCchhhhHHHHhhccccccccccccc---------cccchhhhhhhHhhcCcchhHHHHHH---H
Confidence            45778999999999999999999999999999999874321         1122322232210    111111110   0


Q ss_pred             CCCCCCcccceeeehhhhhhhcccccc---------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPELQ---------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~---------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                         .++.....+.....+.++|+....                     +...|.+|+|||| ++||........+.+..+
T Consensus       479 ---~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~  555 (614)
T KOG0927|consen  479 ---KFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF  555 (614)
T ss_pred             ---hccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc
Confidence               011111122233455555554211                     6789999999999 699988754444444433


Q ss_pred             hCCCcEEEEecCCCCCCChhHHHHHhcCCC---cEEEEeCCCChhHHHHHHHHHH
Q 029421          135 ESNIPVLASIPAPKSGRDIPAVARLRNHPG---ATIFTLSPGNRDSLKDNIYYQL  186 (193)
Q Consensus       135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~---~~~~~~~~~~~~~l~~~~~~~~  186 (193)
                        ..+||++      |||...+.++++++=   -..+...++....-.+....++
T Consensus       556 --~Ggvv~v------SHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~~~~  602 (614)
T KOG0927|consen  556 --PGGVVLV------SHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKR  602 (614)
T ss_pred             --CCceeee------echhhHHHHHHHHhHhhccCceeecCccHHHHHHHHHHHH
Confidence              5689999      999999999999831   1123455566555555554443

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.77  E-value=3.1e-19  Score=139.41  Aligned_cols=50  Identities=16%  Similarity=0.261  Sum_probs=43.8

Q ss_pred             CCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          107 DTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +|+++++||| ++||+.++..+.++++.++++.++|++      ||+ +++.++||++
T Consensus       149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iiv------s~~-~~~~~~~d~v  199 (212)
T cd03274         149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVI------SLR-NNMFELADRL  199 (212)
T ss_pred             CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE------ECc-HHHHHhCCEE
Confidence            5799999999 699999999999999998777788888      898 5677899984

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.76  E-value=1.4e-18  Score=162.42  Aligned_cols=164  Identities=13%  Similarity=0.167  Sum_probs=117.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++||.+||+|..|||||||+.+|.++..|.+|+|.+||.++.+.  .+.|.+++.+||+|..+ -+...|++--...
T Consensus      1161 ~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~ 1240 (1381)
T KOG0054|consen 1161 FTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEY 1240 (1381)
T ss_pred             EEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccccc
Confidence            57999999999999999999999999999999999999999998643  45678999999998422 2333332211110


Q ss_pred             CCCCCcccceeeehhhhhhhc-----------ccc--------------------cccCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIA-----------LPE--------------------LQVGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~-----------l~~--------------------~~l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .    .    +..=+++++..           +..                    .+++.++++|+|||+ +++|+.+-.
T Consensus      1241 s----D----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1241 S----D----DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred             C----H----HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence            0    0    00001111111           110                    018899999999999 599999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      .+++.++.--+++|||.+      .|.++.+.. ||++    +|++  ++.+.+.+|.++
T Consensus      1313 lIQ~tIR~~F~dcTVltI------AHRl~TVmd-~DrVlVld~G~v--~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1313 LIQKTIREEFKDCTVLTI------AHRLNTVMD-SDRVLVLDAGRV--VEFDSPAELLSD 1363 (1381)
T ss_pred             HHHHHHHHHhcCCeEEEE------eeccchhhh-cCeEEEeeCCeE--eecCChHHHHhC
Confidence            999999886568999999      999998875 6884    3333  344556666655

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.74  E-value=4.4e-18  Score=135.83  Aligned_cols=50  Identities=14%  Similarity=0.154  Sum_probs=43.7

Q ss_pred             CCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          107 DTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +|+++|+||| ++||+..+..+.++++.+++ |.+||++      ||+.+ ...+||++
T Consensus       177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~i------sH~~~-~~~~~d~i  228 (247)
T cd03275         177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVI------SLKEE-FFSKADAL  228 (247)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEE------ECCHH-HHhhCCeE
Confidence            5899999999 69999999999999998876 9999999      99955 45689884

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.74  E-value=2.9e-18  Score=143.51  Aligned_cols=166  Identities=16%  Similarity=0.250  Sum_probs=103.2

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc--ccccccccCCCCC--
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR--RAPLASINASSPE--   77 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~--~~~~~~~~~~~~~--   77 (193)
                      +|..||+++++||||.|||||+++|+|.++|++|. ..           .-+++|=||-..+.  .++.+.+.-....  
T Consensus       363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~-----------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~  430 (591)
T COG1245         363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EE-----------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAF  430 (591)
T ss_pred             eeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Cc-----------cceEeecceeecCCCCCcHHHHHHHhhhhhc
Confidence            46789999999999999999999999999999997 11           23456666644211  1111111000000  


Q ss_pred             CCCCCccc--ceeeehhhh------------hhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcE
Q 029421           78 SYRWPTVG--RYKVDVASF------------EAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPV  140 (193)
Q Consensus        78 ~~~~~~~~--~~~~~~~~l------------~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tv  140 (193)
                      ...+...+  +-......+            +++.+. ..|..++++++|||| +-||...|..+.+.++.+.+  ++|.
T Consensus       431 ~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIa-a~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta  509 (591)
T COG1245         431 GSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIA-AALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA  509 (591)
T ss_pred             ccchhHHhhcCccchHHHHhcccccCCchhHHHHHHH-HHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceE
Confidence            00010000  000011111            122111 117899999999999 59999999888899988754  8999


Q ss_pred             EEEecCCCCCCChhHHHHHhcCCCcEEEEeCCC------ChhHHHHHHHHHHHH
Q 029421          141 LASIPAPKSGRDIPAVARLRNHPGATIFTLSPG------NRDSLKDNIYYQLTD  188 (193)
Q Consensus       141 l~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~------~~~~l~~~~~~~~~~  188 (193)
                      ++|      .||+..+..++|+.  .++.-.|+      .+..+.+-.+.+++.
T Consensus       510 ~vV------dHDi~~~dyvsDr~--ivF~GePg~~g~a~~P~~mr~GMN~FLk~  555 (591)
T COG1245         510 LVV------DHDIYMIDYVSDRL--IVFEGEPGKHGHASPPMSMREGMNRFLKN  555 (591)
T ss_pred             EEE------ecceehhhhhhceE--EEEecCCCccCcCCCCccHHHHHHHHHHH
Confidence            999      99999999999984  22221221      233577766666553

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=99.74  E-value=2.2e-17  Score=124.37  Aligned_cols=165  Identities=45%  Similarity=0.771  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec-CCcccccccccCCCCCCCCCCcccc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DDRRAPLASINASSPESYRWPTVGR   86 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~   86 (193)
                      .+.|+|+.|+|||||++-+...++..  .+.+.|+.....+...+++||-..+. .+....+....     ....+..+.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~-----~~~~~~vgk   73 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVD-----FRSGPRVGK   73 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETT-----SS-SCECTT
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEECcCCCcccccccc-----ccccccCCC
Confidence            37899999999999999999888643  35678877666666678899877665 33222222211     122344556


Q ss_pred             eeeehhhhhhhccccccc-CCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCc
Q 029421           87 YKVDVASFEAIALPELQV-GADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGA  165 (193)
Q Consensus        87 ~~~~~~~l~~~~l~~~~l-~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~  165 (193)
                      +....+.++.+++..+.- ..+++++++||.+.|+..+..+..++.+.+..++.+|.|+|.   .++.+.+.+++.+.++
T Consensus        74 y~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~---~~~~~~l~~i~~~~~~  150 (168)
T PF03266_consen   74 YFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHK---RSDNPFLEEIKRRPDV  150 (168)
T ss_dssp             CEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--S---S--SCCHHHHHTTTTS
T ss_pred             EEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEec---CCCcHHHHHHHhCCCc
Confidence            667778888888776542 278999999999999999999888888888878999999885   3366789999999999


Q ss_pred             EEEEeCCCChhHHHHHH
Q 029421          166 TIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       166 ~~~~~~~~~~~~l~~~~  182 (193)
                      .++.++..|++.+.+++
T Consensus       151 ~i~~vt~~NRd~l~~~i  167 (168)
T PF03266_consen  151 KIFEVTEENRDALPEEI  167 (168)
T ss_dssp             EEEE--TTTCCCHHHHH
T ss_pred             EEEEeChhHHhhHhhhh
Confidence            99999999999998876

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.4e-18  Score=144.24  Aligned_cols=172  Identities=12%  Similarity=0.191  Sum_probs=115.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+++.|+.++++||+|+||||+++++...+.+++|.|.++|++++..  ...++-||.+||+-..+ .+.+.|+.+..+.
T Consensus       284 f~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~  363 (497)
T COG5265         284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD  363 (497)
T ss_pred             ccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc
Confidence            67899999999999999999999999999999999999999998643  23467899999976222 2333444333221


Q ss_pred             CCCCCc--ccceeeehhhhh--------hhccccc--------------ccCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           78 SYRWPT--VGRYKVDVASFE--------AIALPEL--------------QVGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        78 ~~~~~~--~~~~~~~~~~l~--------~~~l~~~--------------~l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ......  ..+........+        .+|...+              .++.+|+++++||. ++||....+.+++-++
T Consensus       364 at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~  443 (497)
T COG5265         364 ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR  443 (497)
T ss_pred             ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHH
Confidence            110000  000000000011        1111111              17899999999999 6999999999999999


Q ss_pred             HHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      ....|.|-+++      .|.+..+.. ||++    +|.  .++.+..++|.++
T Consensus       444 ~~~~~rttlvi------ahrlsti~~-adeiivl~~g~--i~erg~h~~ll~~  487 (497)
T COG5265         444 EVSAGRTTLVI------AHRLSTIID-ADEIIVLDNGR--IVERGTHEELLAA  487 (497)
T ss_pred             HHhCCCeEEEE------eehhhhccC-CceEEEeeCCE--EEecCcHHHHHHc
Confidence            98888888888      898877643 5652    222  3455666777665

>PRK13695 putative NTPase; Provisional

Probab=99.72  E-value=2.9e-16  Score=118.93  Aligned_cols=166  Identities=41%  Similarity=0.722  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCCCCCcccc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESYRWPTVGR   86 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~   86 (193)
                      .++|+|+||||||||++.+++.+.+ .| +.+.|..........+..+|...+.. +....+.....     ........
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~   74 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGF-----PSRPRVGK   74 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCC-----CCCCceee
Confidence            5899999999999999999988766 46 45555443322223344555444321 11111111000     01111112


Q ss_pred             eeeehhhhhhhccccc-ccCCCCCEEEEecCCCccccccchHHHHHHH-HhCCCcEEEEecCCCCCCChh---HHHHHhc
Q 029421           87 YKVDVASFEAIALPEL-QVGADTDLFVIDEVGKMELFSSSFFPAVLRI-LESNIPVLASIPAPKSGRDIP---AVARLRN  161 (193)
Q Consensus        87 ~~~~~~~l~~~~l~~~-~l~~~p~llllDEp~~LD~~~~~~~~~ll~~-l~~g~tvl~~~~~~~~tHd~~---~~~~~~d  161 (193)
                      .....+.++.+..... ..+.+|+++++|||+.++..... +.+.+.. ++.|.++|++      +|+..   .+.++..
T Consensus        75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~-~~~~l~~~~~~~~~~i~v------~h~~~~~~~~~~i~~  147 (174)
T PRK13695         75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK-FVKAVEEVLDSEKPVIAT------LHRRSVHPFVQEIKS  147 (174)
T ss_pred             EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH-HHHHHHHHHhCCCeEEEE------ECchhhHHHHHHHhc
Confidence            2223344444443221 14568999999998666555533 3444444 4449999999      77732   3444555


Q ss_pred             CCCcEEEEeCCCChhHHHHHHHHHHH
Q 029421          162 HPGATIFTLSPGNRDSLKDNIYYQLT  187 (193)
Q Consensus       162 ~~~~~~~~~~~~~~~~l~~~~~~~~~  187 (193)
                      +.++.++.+++.|++++.+++.+.++
T Consensus       148 ~~~~~i~~~~~~~r~~~~~~~~~~~~  173 (174)
T PRK13695        148 RPGGRVYELTPENRDSLPFEILNRLK  173 (174)
T ss_pred             cCCcEEEEEcchhhhhHHHHHHHHHh
Confidence            57889999999999999999988764

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.72  E-value=1.3e-17  Score=145.26  Aligned_cols=141  Identities=13%  Similarity=0.165  Sum_probs=101.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |++++|+.+.|.||||||||||+|+|+|+.|--+|+|.+-         ...++-|+||.|+ +.-+..+.+.++.....
T Consensus       414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P---------~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~  484 (604)
T COG4178         414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP---------ADSALLFLPQRPYLPQGTLREALCYPNAAPD  484 (604)
T ss_pred             eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC---------CCCceEEecCCCCCCCccHHHHHhCCCCCCC
Confidence            5789999999999999999999999999999988888653         2345789999873 33344444444432210


Q ss_pred             CCCcccceeeehhhhhhhcccccc--------------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQ--------------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~--------------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                       .    ..+...+.+.++++.++.                          ++.+|++++|||. ++||+.+...++++++
T Consensus       485 -~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~  559 (604)
T COG4178         485 -F----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK  559 (604)
T ss_pred             -C----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHH
Confidence             1    112234556666665442                          7899999999999 6999999988888888


Q ss_pred             HHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          133 ILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .-..+.|||-|      +|.. .+..+.++
T Consensus       560 ~~lp~~tvISV------~Hr~-tl~~~h~~  582 (604)
T COG4178         560 EELPDATVISV------GHRP-TLWNFHSR  582 (604)
T ss_pred             hhCCCCEEEEe------ccch-hhHHHHhh
Confidence            74458999999      7763 34444443

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.72  E-value=1.6e-17  Score=128.78  Aligned_cols=132  Identities=19%  Similarity=0.146  Sum_probs=76.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh-cccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES-LKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl-~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~   79 (193)
                      +++..|++++|+||||||||||+++|++. +.+..|....         ..+..+++..+... .....+....      
T Consensus        24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~---------~~~~~i~~~dqi~~-~~~~~d~i~~------   87 (202)
T cd03243          24 INLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP---------AESASIPLVDRIFT-RIGAEDSISD------   87 (202)
T ss_pred             EEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc---------ccccccCCcCEEEE-EecCcccccC------
Confidence            35788999999999999999999999954 3334443211         11223343222110 0000000000      


Q ss_pred             CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChhHH
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~  156 (193)
                         ...  ....+. .++.. .+..+.+|+++|+||| +|+|+..+..+ ..+++.+.+ +.++|++      ||+.+.+
T Consensus        88 ---~~s--~~~~e~-~~l~~-i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~------tH~~~~~  154 (202)
T cd03243          88 ---GRS--TFMAEL-LELKE-ILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA------THFHELA  154 (202)
T ss_pred             ---Cce--eHHHHH-HHHHH-HHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE------CChHHHH
Confidence               000  001111 11110 0124579999999999 69999887654 566777665 8999999      9997655


Q ss_pred             HHHhcC
Q 029421          157 ARLRNH  162 (193)
Q Consensus       157 ~~~~d~  162 (193)
                      . .+++
T Consensus       155 ~-~~~~  159 (202)
T cd03243         155 D-LPEQ  159 (202)
T ss_pred             H-Hhhc
Confidence            4 5665

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.70  E-value=2.6e-17  Score=127.41  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             CcccCCC-EEEEEcCCCCcHHHHHHHHH-hhcccCCCC-eEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCC
Q 029421            1 MAAGAGK-CFLVTGPPGVGKTTLIMRVL-ESLKASNPS-LKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge-~~~l~GpnGsGKSTLl~~i~-gl~~~~~G~-i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~   77 (193)
                      |++.+|+ +++|+||||||||||+|.|+ +.+.+..|. +...         ....++|..|... .....+....    
T Consensus        22 ~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---------~~~~~~~~~~~~~-~lg~~~~l~~----   87 (200)
T cd03280          22 IQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---------EGSSLPVFENIFA-DIGDEQSIEQ----   87 (200)
T ss_pred             EEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---------ccccCcCccEEEE-ecCchhhhhc----
Confidence            4678885 89999999999999999998 333344441 1110         0112344333221 0000000000    


Q ss_pred             CCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIP  154 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~  154 (193)
                      .     ....  .....+...+.  ..+.+|+++++||| +++|+..+..+ ..+++.+.+ |.++|++      ||+ .
T Consensus        88 ~-----~s~f--s~g~~~~~~i~--~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~------tH~-~  151 (200)
T cd03280          88 S-----LSTF--SSHMKNIARIL--QHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIAT------THY-G  151 (200)
T ss_pred             C-----cchH--HHHHHHHHHHH--HhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE------CCH-H
Confidence            0     0000  00111111111  12479999999999 69999998766 467777766 8999999      998 5


Q ss_pred             HHHHHhcCC
Q 029421          155 AVARLRNHP  163 (193)
Q Consensus       155 ~~~~~~d~~  163 (193)
                      .+..+||+.
T Consensus       152 ~l~~~~d~~  160 (200)
T cd03280         152 ELKAYAYKR  160 (200)
T ss_pred             HHHHHHhcC
Confidence            677889884

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.70  E-value=3.8e-17  Score=131.63  Aligned_cols=122  Identities=22%  Similarity=0.251  Sum_probs=80.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh---hccCCceeeEEEeecCC-cccccccccCCCCCCCCCC
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE---IRQGGQRVGFEVVTLDD-RRAPLASINASSPESYRWP   82 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~---~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~   82 (193)
                      ..++|+||||||||||+++|+|+++|++|++.++|+++..   .+.....++++||.... ...++++            
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~------------  179 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG------------  179 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc------------
Confidence            5689999999999999999999999999999999998742   12223345566664311 1111111            


Q ss_pred             cccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421           83 TVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus        83 ~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                          .... +     ++..+..+.+|+++++|||+.     .+.+.++++.+.+|.++|++      +|+. .+...+++
T Consensus       180 ----~~k~-~-----~~~~~i~~~~P~villDE~~~-----~e~~~~l~~~~~~G~~vI~t------tH~~-~~~~~~~r  237 (270)
T TIGR02858       180 ----CPKA-E-----GMMMLIRSMSPDVIVVDEIGR-----EEDVEALLEALHAGVSIIAT------AHGR-DVEDLYKR  237 (270)
T ss_pred             ----chHH-H-----HHHHHHHhCCCCEEEEeCCCc-----HHHHHHHHHHHhCCCEEEEE------echh-HHHHHHhC
Confidence                0001 0     112222457999999999852     34466777776679999999      9974 34444443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.69  E-value=1.7e-17  Score=133.02  Aligned_cols=52  Identities=13%  Similarity=0.248  Sum_probs=45.3

Q ss_pred             cCCC---CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGAD---TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~---p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ++.+   |+++||||| +|||+..+..+.++++.+.+ |.|||++      ||+++.+. .||+
T Consensus       184 L~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIii------tH~~~~i~-~aD~  240 (261)
T cd03271         184 LSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI------EHNLDVIK-CADW  240 (261)
T ss_pred             HhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------eCCHHHHH-hCCE
Confidence            5554   799999999 69999999999999998876 9999999      99998775 6886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=1.2e-16  Score=149.61  Aligned_cols=154  Identities=20%  Similarity=0.321  Sum_probs=108.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec-CCcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL-DDRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~-~~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|+.++|+||-|||||+||.+|+|.++..+|++.++|.           ++|++|.+ ....+..+|+.+..+...
T Consensus       542 ~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-----------iaYv~Q~pWI~ngTvreNILFG~~~d~  610 (1381)
T KOG0054|consen  542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-----------VAYVPQQPWIQNGTVRENILFGSPYDE  610 (1381)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----------EEEeccccHhhCCcHHHhhhcCccccH
Confidence            578999999999999999999999999999999999999873           89999987 334567777766543211


Q ss_pred             CCCcccceeeehh------hhhhhccccc----------------------ccCCCCCEEEEecC-CCcccccc-chHHH
Q 029421           80 RWPTVGRYKVDVA------SFEAIALPEL----------------------QVGADTDLFVIDEV-GKMELFSS-SFFPA  129 (193)
Q Consensus        80 ~~~~~~~~~~~~~------~l~~~~l~~~----------------------~l~~~p~llllDEp-~~LD~~~~-~~~~~  129 (193)
                           ++++.+.+      .++.+.-.+.                      ++-+++++++||+| +++|.... ..+.+
T Consensus       611 -----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~  685 (1381)
T KOG0054|consen  611 -----ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEE  685 (1381)
T ss_pred             -----HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHH
Confidence                 11211111      1111111111                      16689999999999 89998885 57778


Q ss_pred             HHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHH
Q 029421          130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLK  179 (193)
Q Consensus       130 ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~  179 (193)
                      .++.+-+++|+|+|      ||.++.+. -||.+    +|++  ...++.+++.
T Consensus       686 ci~~~L~~KT~ILV------THql~~L~-~ad~Iivl~~G~I--~~~Gty~el~  730 (1381)
T KOG0054|consen  686 CIRGLLRGKTVILV------THQLQFLP-HADQIIVLKDGKI--VESGTYEELL  730 (1381)
T ss_pred             HHHhhhcCCEEEEE------eCchhhhh-hCCEEEEecCCeE--ecccCHHHHH
Confidence            88666668999999      99876654 57773    3333  3334555555

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.67  E-value=2.8e-15  Score=110.03  Aligned_cols=170  Identities=39%  Similarity=0.698  Sum_probs=124.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCCCCCcc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESYRWPTV   84 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~   84 (193)
                      -.-++|+|++|+||||++.-|+..+.-. | ..+.|.-..+.+...+++||--.+.. +....+...      ....+..
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~-g-~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~------~~~~~rv   76 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREK-G-YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARV------GFSRPRV   76 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhc-C-ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEc------CCCCccc
Confidence            3468999999999999999999888654 4 77888888778888899999776653 222222221      1134666


Q ss_pred             cceeeehhhhhhhcccccc-cCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421           85 GRYKVDVASFEAIALPELQ-VGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus        85 ~~~~~~~~~l~~~~l~~~~-l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++....+.++++.+..+. -...+++++.||.+.|+..++++...+-..++.++.+|.++|.-  |.+ +.+.++...-
T Consensus        77 GkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrr--sr~-P~v~~ik~~~  153 (179)
T COG1618          77 GKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRR--SRH-PLVQRIKKLG  153 (179)
T ss_pred             ceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecc--cCC-hHHHHhhhcC
Confidence            7888888888888777655 23457999999999999999888887777787889999997631  122 4566665443


Q ss_pred             CcEEEEeCCCChhHHHHHHHHHHH
Q 029421          164 GATIFTLSPGNRDSLKDNIYYQLT  187 (193)
Q Consensus       164 ~~~~~~~~~~~~~~l~~~~~~~~~  187 (193)
                      ...+ ++++.|++.+..++...+.
T Consensus       154 ~v~v-~lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         154 GVYV-FLTPENRNRILNEILSVLK  176 (179)
T ss_pred             CEEE-EEccchhhHHHHHHHHHhc
Confidence            3333 3999999988888776654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.65  E-value=2.2e-16  Score=133.39  Aligned_cols=160  Identities=13%  Similarity=0.125  Sum_probs=116.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc-h---hhccCCceeeEEEeecC-----Ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT-G---EIRQGGQRVGFEVVTLD-----DRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~-~---~~~~~~~~ig~~~q~~~-----~~~~~~~~~   71 (193)
                      |+|.+|||++|.|-.|.|-+.|+.+|+|+.++.+|+|.++|+++ .   ........++|+|.+-.     ..++..+|.
T Consensus       279 ~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~  358 (501)
T COG3845         279 FEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENL  358 (501)
T ss_pred             eEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHh
Confidence            68999999999999999999999999999998889999999986 2   22233456889998752     334555554


Q ss_pred             cCCCCC---CCCCCc---ccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecCC-Cccccc
Q 029421           72 NASSPE---SYRWPT---VGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEVG-KMELFS  123 (193)
Q Consensus        72 ~~~~~~---~~~~~~---~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp~-~LD~~~  123 (193)
                      .+....   +..+..   ........+..+++++...         +            +..+|++||+.+|+ |||..+
T Consensus       359 vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA  438 (501)
T COG3845         359 VLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA  438 (501)
T ss_pred             hhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHH
Confidence            433221   111110   1111223344555544311         1            77999999999996 999999


Q ss_pred             cchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCCCcE
Q 029421          124 SSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGAT  166 (193)
Q Consensus       124 ~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~  166 (193)
                      .+++.+.+...++ |++|+++      |-|++++..+||++.+.
T Consensus       439 ~~~I~~~l~e~r~~G~AVLLi------S~dLDEil~lsDrIaVi  476 (501)
T COG3845         439 IEFIHERLLELRDAGKAVLLI------SEDLDEILELSDRIAVI  476 (501)
T ss_pred             HHHHHHHHHHHHhcCCEEEEE------ehhHHHHHHhhheeeee
Confidence            9888888877766 9999999      99999999999996543

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.64  E-value=8.4e-16  Score=118.86  Aligned_cols=52  Identities=13%  Similarity=0.151  Sum_probs=43.6

Q ss_pred             CCCCCEEEEecC-CCccccccchHHHHHHHHh-C---CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S---NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~---g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+|+++|+||| +++|+..+..+.+++..+. +   +.+|+++      ||+++.+..+ |++
T Consensus       129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~------th~~~~i~~~-d~v  185 (198)
T cd03276         129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT------PQDISGLASS-DDV  185 (198)
T ss_pred             ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEE------CCcccccccc-cce
Confidence            589999999999 6999999988888887753 2   3589999      9999988776 775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=8.8e-17  Score=136.22  Aligned_cols=51  Identities=18%  Similarity=0.311  Sum_probs=43.8

Q ss_pred             cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +..+|++|||||| +-||..+...+.+.+..+.  .|+|+|      |||-.++..+|..
T Consensus       213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liV------SHDr~FLn~V~td  264 (582)
T KOG0062|consen  213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIV------SHDRNFLNTVCTD  264 (582)
T ss_pred             HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEE------eccHHHHHHHHHH
Confidence            7899999999999 5899988777777777664  799999      9999999888864

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.63  E-value=7.9e-16  Score=119.47  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceee-EEEeecCCcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVG-FEVVTLDDRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig-~~~q~~~~~~~~~~~~~~~~~~~~   79 (193)
                      |++++|++++|+||||+||||++++++++.--                   .++| |+|-.. ...+.++++........
T Consensus        24 ~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-------------------a~~G~~vpa~~-~~l~~~d~I~~~~~~~d   83 (204)
T cd03282          24 LTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-------------------AQIGCFVPAEY-ATLPIFNRLLSRLSNDD   83 (204)
T ss_pred             EeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-------------------HHcCCCcchhh-cCccChhheeEecCCcc
Confidence            35678899999999999999999999987411                   0112 222111 11222222211110000


Q ss_pred             CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCcccccc-chHHHHHHHHhC-CCcEEEEecCCCCCCChhHH
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSS-SFFPAVLRILES-NIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~  156 (193)
                      ... ........+ +.++. ..+.++.+|+++++||| .|+|+... ....++++.+.+ |.++|++      ||+.+.+
T Consensus        84 ~~~-~~~S~fs~e-~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~------TH~~~l~  154 (204)
T cd03282          84 SME-RNLSTFASE-MSETA-YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA------THFRDIA  154 (204)
T ss_pred             ccc-hhhhHHHHH-HHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE------CChHHHH
Confidence            000 000000011 11111 11225678999999999 69999764 456677887776 9999999      9998888


Q ss_pred             HHHhcCCCcEE
Q 029421          157 ARLRNHPGATI  167 (193)
Q Consensus       157 ~~~~d~~~~~~  167 (193)
                      ..+++..+...
T Consensus       155 ~~~~~~~~v~~  165 (204)
T cd03282         155 AILGNKSCVVH  165 (204)
T ss_pred             HHhhcCCCeEE
Confidence            77766544433

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=9e-16  Score=128.53  Aligned_cols=160  Identities=17%  Similarity=0.342  Sum_probs=91.9

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcc----cccccccCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRR----APLASINASSPE   77 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~----~~~~~~~~~~~~   77 (193)
                      -|.--..++|+||||.||||||+++.|-+.|+.|+.+-         .++-+||+.-|+....+    ++.+.+-.    
T Consensus       609 GiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK---------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr----  675 (807)
T KOG0066|consen  609 GIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK---------NHRLRIGWFDQHANEALNGEETPVEYLQR----  675 (807)
T ss_pred             cccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc---------cceeeeechhhhhHHhhccccCHHHHHHH----
Confidence            34555789999999999999999999999999997643         23556887766542221    22111100    


Q ss_pred             CCCCCcccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      .++.+    ++.+...+-.+|+..         ++            -+..|++|||||| ++||..+...+.   ..+.
T Consensus       676 ~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALa---EAIn  748 (807)
T KOG0066|consen  676 KFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALA---EAIN  748 (807)
T ss_pred             hcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHH---HHHH
Confidence            00001    111112222222211         11            3578999999999 599988744333   4444


Q ss_pred             C-CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCC-------CChhHHHHHHHHHHHHHhh
Q 029421          136 S-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSP-------GNRDSLKDNIYYQLTDAVS  191 (193)
Q Consensus       136 ~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~  191 (193)
                      + ...||+|      |||-..+    .+.+....++..       +..+.-.+++...+-+.+.
T Consensus       749 ey~GgVi~V------sHDeRLi----~eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGEv~v  802 (807)
T KOG0066|consen  749 EYNGGVIMV------SHDERLI----VETDCNLWVVENQGIDEIDGDFEDYKKEVLDALGEVLV  802 (807)
T ss_pred             hccCcEEEE------eccccee----eecCceEEEEccCChhhccccHHHHHHHHHHHHHHHhh
Confidence            4 5689999      9996554    233333433333       2333445555555555443

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.59  E-value=6.8e-16  Score=131.57  Aligned_cols=53  Identities=11%  Similarity=0.151  Sum_probs=44.8

Q ss_pred             cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |..+|++|+|||| ++||+.+...+.+.+.....+ +++++      +|+-+++-.+|.++
T Consensus       236 Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~------sh~QDfln~vCT~I  289 (614)
T KOG0927|consen  236 LFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIV------SHSQDFLNGVCTNI  289 (614)
T ss_pred             HhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEE------ecchhhhhhHhhhh
Confidence            8899999999999 599999988777777765544 78888      89988999999873

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.58  E-value=5.8e-15  Score=126.77  Aligned_cols=141  Identities=15%  Similarity=0.098  Sum_probs=93.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|+.+.|+||||||||+|+|.++|+.+-.+|++..-...      ..+.+-|+||.|+ ..-+..+.+.++.....
T Consensus       456 ~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~------~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~  529 (659)
T KOG0060|consen  456 LEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG------GPKDLFFLPQRPYMTLGTLRDQVIYPLKAED  529 (659)
T ss_pred             eEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC------CCCceEEecCCCCccccchhheeeccCcccc
Confidence            5789999999999999999999999999999999988653211      1145789999873 22233344444422111


Q ss_pred             CCCcccceeeehhhhhhhcccccc-------------------------------cCCCCCEEEEecC-CCccccccchH
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQ-------------------------------VGADTDLFVIDEV-GKMELFSSSFF  127 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~-------------------------------l~~~p~llllDEp-~~LD~~~~~~~  127 (193)
                      .+..........+.++.+++.++.                               +..+|++-+|||. +++|......+
T Consensus       530 ~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~  609 (659)
T KOG0060|consen  530 MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGAL  609 (659)
T ss_pred             ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHH
Confidence            111111122334455555554332                               6689999999999 58887765555


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCCCChhH
Q 029421          128 PAVLRILESNIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus       128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~~  155 (193)
                      .+.+++.  |.|.|-|      +|.-..
T Consensus       610 Yr~~r~~--giT~iSV------gHRkSL  629 (659)
T KOG0060|consen  610 YRKCREM--GITFISV------GHRKSL  629 (659)
T ss_pred             HHHHHHc--CCeEEEe------ccHHHH
Confidence            5444432  8999999      998543

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.56  E-value=3.7e-14  Score=110.83  Aligned_cols=124  Identities=18%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh--hcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCcc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLE--SLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTV   84 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~g--l~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~   84 (193)
                      .+++|+||||+|||||||.++.  .+ +..|.+....         .-.++|..|... .....+...    .     ..
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~---------~~~~~~~d~i~~-~l~~~~si~----~-----~~   89 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD---------SATIGLVDKIFT-RMSSRESVS----S-----GQ   89 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC---------CcEEeeeeeeee-eeCCccChh----h-----cc
Confidence            6899999999999999999984  34 5566553321         234556555321 110000000    0     00


Q ss_pred             cceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccc-cchHHHHHHHHhC-C---CcEEEEecCCCCCCChhHHHH
Q 029421           85 GRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFS-SSFFPAVLRILES-N---IPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus        85 ~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~-~~~~~~ll~~l~~-g---~tvl~~~~~~~~tHd~~~~~~  158 (193)
                      .   ....-++++.. .+.++.+|+++|+||| .|+|+.. .....++++.+.+ |   .++|++      ||+.+.+..
T Consensus        90 S---~f~~el~~l~~-~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~------TH~~~l~~~  159 (213)
T cd03281          90 S---AFMIDLYQVSK-ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVS------THFHELFNR  159 (213)
T ss_pred             c---hHHHHHHHHHH-HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE------cChHHHHHh
Confidence            0   01111222221 1124678999999999 6999876 4566677777643 2   478999      999888776


Q ss_pred             Hh
Q 029421          159 LR  160 (193)
Q Consensus       159 ~~  160 (193)
                      ..
T Consensus       160 ~~  161 (213)
T cd03281         160 SL  161 (213)
T ss_pred             hh
Confidence            54

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.56  E-value=2.9e-15  Score=143.64  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=46.3

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .+|+++||||| +|||+..+..+.++++.+++ |.|||++      ||+++.+ ++||+
T Consensus       829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiI------sHdl~~i-~~aDr  880 (1809)
T PRK00635        829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVII------EHNMHVV-KVADY  880 (1809)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHH-HhCCE
Confidence            69999999999 69999999999999998876 9999999      9999988 78998

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.56  E-value=1.3e-14  Score=113.48  Aligned_cols=60  Identities=10%  Similarity=0.015  Sum_probs=48.6

Q ss_pred             CCCCCEEEEecC-CCccccccchHHHHHHHHh-C-C-CcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCC
Q 029421          105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S-N-IPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSP  172 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~-g-~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~  172 (193)
                      +.+|+++++||| ++||+..+..+.+++..+. + | .++|++      ||++....+++|+.  .+.++..
T Consensus       146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viii------th~~~~~~~~~~~~--~v~~l~~  209 (213)
T cd03277         146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLI------TPKLLPGLNYHEKM--TVLCVYN  209 (213)
T ss_pred             ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEE------chhhccCCcccCce--EEEEEec
Confidence            579999999999 6999999998888887764 4 5 479999      99988888888876  4444443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.56  E-value=2.8e-15  Score=125.87  Aligned_cols=169  Identities=17%  Similarity=0.165  Sum_probs=103.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCC---------------ceeeEEEeecCCcc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGG---------------QRVGFEVVTLDDRR   65 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~---------------~~ig~~~q~~~~~~   65 (193)
                      ..+|.+++|+||||.||||.+|+|+|.+.|.-|+.  ++.+-|.  .+.++               .++..=+|-.    
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYV----  170 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYV----  170 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHH----
Confidence            46899999999999999999999999999988763  3322221  01110               0111111100    


Q ss_pred             cccccccCCCCCCCC-----CCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCc
Q 029421           66 APLASINASSPESYR-----WPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKM  119 (193)
Q Consensus        66 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~L  119 (193)
                         +.  ++. ....     ....+......+..+++++...        +            ++.+++++++||| +.|
T Consensus       171 ---d~--iPk-~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyL  244 (591)
T COG1245         171 ---DL--IPK-VVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYL  244 (591)
T ss_pred             ---HH--HHH-HhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccc
Confidence               00  000 0000     0000111122334444444322        1            7899999999999 699


Q ss_pred             cccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCCCcEE-----EEeCCCChhHHHHHHHHHHHHHh
Q 029421          120 ELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATI-----FTLSPGNRDSLKDNIYYQLTDAV  190 (193)
Q Consensus       120 D~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~  190 (193)
                      |...|-....+++.+.+ +++||+|      .||+..+.-++|-+++..     +-+.. .+-....-|+..++-++
T Consensus       245 Di~qRl~~ar~Irel~~~~k~ViVV------EHDLavLD~lsD~vhI~YG~pg~YGvvs-~p~svr~gIN~yL~Gyl  314 (591)
T COG1245         245 DIRQRLNAARVIRELAEDGKYVIVV------EHDLAVLDYLSDFVHILYGEPGVYGVVS-KPKSVRVGINEYLKGYL  314 (591)
T ss_pred             cHHHHHHHHHHHHHHhccCCeEEEE------echHHHHHHhhheeEEEecCCccceEec-cchHHHHHHHHHHhccC
Confidence            99999888999999987 8999999      999999999999753221     22222 23346666666665443

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.55  E-value=3.7e-15  Score=137.08  Aligned_cols=52  Identities=13%  Similarity=0.222  Sum_probs=46.5

Q ss_pred             cCCCC---CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGADT---DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~p---~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ++.+|   +++||||| +|||+..+..+.++++.+.+ |.|||++      +|+++.+. .||+
T Consensus       845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii------tH~~~~i~-~aD~  901 (943)
T PRK00349        845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI------EHNLDVIK-TADW  901 (943)
T ss_pred             HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------ecCHHHHH-hCCE
Confidence            67788   99999999 69999999999999998876 9999999      99998874 6887

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.52  E-value=3.2e-14  Score=106.62  Aligned_cols=126  Identities=17%  Similarity=0.251  Sum_probs=72.9

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeE-EEeecCCcccccccccCCCCCCCCCC
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGF-EVVTLDDRRAPLASINASSPESYRWP   82 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~-~~q~~~~~~~~~~~~~~~~~~~~~~~   82 (193)
                      .++.+++|+|||||||||+++.+....-..+|......         ..+.|+ ++......  .+...        ...
T Consensus        19 ~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~~--i~~~~--------~lS   79 (162)
T cd03227          19 GEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS---------GVKAGCIVAAVSAEL--IFTRL--------QLS   79 (162)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC---------cccCCCcceeeEEEE--ehhee--------ecc
Confidence            34569999999999999999998877655554433210         001121 11110000  00000        000


Q ss_pred             cccceeeehhhhhhhccccc-cc--CCCCCEEEEecC-CCccccccchHHHHHHHHh-CCCcEEEEecCCCCCCChhHHH
Q 029421           83 TVGRYKVDVASFEAIALPEL-QV--GADTDLFVIDEV-GKMELFSSSFFPAVLRILE-SNIPVLASIPAPKSGRDIPAVA  157 (193)
Q Consensus        83 ~~~~~~~~~~~l~~~~l~~~-~l--~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~g~tvl~~~~~~~~tHd~~~~~  157 (193)
                      . +       ..+++.+... ..  ..+|+++++||| .++|+..+..+...+..+. +|.++|++      ||+.+...
T Consensus        80 ~-G-------~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~------TH~~~~~~  145 (162)
T cd03227          80 G-G-------EKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI------THLPELAE  145 (162)
T ss_pred             c-c-------HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE------cCCHHHHH
Confidence            0 0       0011111110 01  138999999999 6999999877777776654 37899999      99987664


Q ss_pred             HHhcCC
Q 029421          158 RLRNHP  163 (193)
Q Consensus       158 ~~~d~~  163 (193)
                       .+|+.
T Consensus       146 -~~d~~  150 (162)
T cd03227         146 -LADKL  150 (162)
T ss_pred             -hhhhE
Confidence             57773

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.52  E-value=6.6e-14  Score=106.53  Aligned_cols=52  Identities=6%  Similarity=0.110  Sum_probs=44.1

Q ss_pred             CCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+|+++++||| +++|+..+..+.+++..+.+ |.++|++      ||+.+.+ ..+|++
T Consensus       114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIii------SH~~~~~-~~adrv  167 (178)
T cd03239         114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI------TLKKEMF-ENADKL  167 (178)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------ECCHHHH-hhCCeE
Confidence            368999999999 69999999988888888766 7999999      9997655 467773

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.52  E-value=5.1e-14  Score=110.31  Aligned_cols=123  Identities=18%  Similarity=0.238  Sum_probs=68.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCccc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVG   85 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (193)
                      ++++|+||||||||||+|.+++..-. ..|.      .+   +.....++++.+-+ ...+..++....           
T Consensus        31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~v---p~~~~~i~~~~~i~-~~~~~~~~ls~g-----------   89 (216)
T cd03284          31 QILLITGPNMAGKSTYLRQVALIALLAQIGS------FV---PASKAEIGVVDRIF-TRIGASDDLAGG-----------   89 (216)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHHhccCC------ee---ccccceecceeeEe-ccCCchhhhccC-----------
Confidence            79999999999999999999875321 1221      11   11233456554422 122222221110           


Q ss_pred             ceeeehhhhhhhcccc-cccCCCCCEEEEecC---C-CccccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHH
Q 029421           86 RYKVDVASFEAIALPE-LQVGADTDLFVIDEV---G-KMELFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus        86 ~~~~~~~~l~~~~l~~-~~l~~~p~llllDEp---~-~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~  158 (193)
                      ....   ..+...+.. +..+.+|+++|+|||   + ++|..+  ....+++.+. . +.++|++      ||+. ++.+
T Consensus        90 ~s~f---~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~--~~~~il~~l~~~~~~~vi~~------TH~~-~l~~  157 (216)
T cd03284          90 RSTF---MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAIVEYLHEKIGAKTLFA------THYH-ELTE  157 (216)
T ss_pred             cchH---HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH--HHHHHHHHHHhccCCcEEEE------eCcH-HHHH
Confidence            0000   111111111 113578999999999   3 455432  3455666554 4 7899999      9995 5566


Q ss_pred             HhcC
Q 029421          159 LRNH  162 (193)
Q Consensus       159 ~~d~  162 (193)
                      ++++
T Consensus       158 l~~~  161 (216)
T cd03284         158 LEGK  161 (216)
T ss_pred             Hhhc
Confidence            7776

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.49  E-value=4.2e-14  Score=108.11  Aligned_cols=153  Identities=11%  Similarity=0.120  Sum_probs=91.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCCcccccccccCCCC--
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRAPLASINASSP--   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~~~~~~~~~~~~~~--   76 (193)
                      ++++.|..+.++|.||||||||+|+++|---.-.|.|.+.|.+.....  .......|.-.+... .... +-..+..  
T Consensus        35 ldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~-~~~~-agevplq~D  112 (291)
T KOG2355|consen   35 LDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSK-TVGI-AGEVPLQGD  112 (291)
T ss_pred             eccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccc-cccc-ccccccccc
Confidence            467899999999999999999999999975555589999998763211  111223443322110 0000 0000000  


Q ss_pred             ----CC-CCCCcccceeeehhhhhhhc------cccc------------ccCCCCCEEEEecCC-CccccccchHHHHHH
Q 029421           77 ----ES-YRWPTVGRYKVDVASFEAIA------LPEL------------QVGADTDLFVIDEVG-KMELFSSSFFPAVLR  132 (193)
Q Consensus        77 ----~~-~~~~~~~~~~~~~~~l~~~~------l~~~------------~l~~~p~llllDEp~-~LD~~~~~~~~~ll~  132 (193)
                          .. ..... ....+.......++      +...            -|+..-++|+|||.+ -||..++..+.++++
T Consensus       113 ~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlk  191 (291)
T KOG2355|consen  113 ISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLK  191 (291)
T ss_pred             ccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHH
Confidence                00 00000 00000111111111      1111            156677999999996 999999998888888


Q ss_pred             HHhC--CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          133 ILES--NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       133 ~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .-.+  |.||+.+      ||..+-++.+..+
T Consensus       192 eEce~RgatIVYA------THIFDGLe~Wpth  217 (291)
T KOG2355|consen  192 EECEQRGATIVYA------THIFDGLETWPTH  217 (291)
T ss_pred             HHHhhcCcEEEEE------eeeccchhhcchh
Confidence            7543  9999999      8888888888777

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.47  E-value=5.9e-14  Score=110.38  Aligned_cols=50  Identities=16%  Similarity=0.209  Sum_probs=37.6

Q ss_pred             CCCCCEEEEecC---C-CccccccchHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          105 GADTDLFVIDEV---G-KMELFSSSFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       105 ~~~p~llllDEp---~-~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+|+++|+|||   + ++|+.+..  ..+++.+. + |.++|++      ||+ .++.++||+.
T Consensus       107 ~~~~sLvLLDEp~~gT~~lD~~~~~--~~il~~l~~~~~~~vlis------TH~-~el~~~~~~~  162 (222)
T cd03285         107 ATENSLIIIDELGRGTSTYDGFGLA--WAIAEYIATQIKCFCLFA------THF-HELTALADEV  162 (222)
T ss_pred             CCCCeEEEEecCcCCCChHHHHHHH--HHHHHHHHhcCCCeEEEE------ech-HHHHHHhhcC
Confidence            578999999999   4 68877653  33434443 3 8899999      996 7788899874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.47  E-value=1e-13  Score=106.06  Aligned_cols=51  Identities=18%  Similarity=0.265  Sum_probs=40.4

Q ss_pred             CCCCCEEEEecC-CCccccccc-hHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          105 GADTDLFVIDEV-GKMELFSSS-FFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~-~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.+|+++|+||| +|+|+.... ....+++.+. + +.++|++      ||+. ++.+++++
T Consensus        76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~------TH~~-~l~~~~~~  130 (185)
T smart00534       76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA------THYH-ELTKLADE  130 (185)
T ss_pred             CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE------ecHH-HHHHHhhc
Confidence            458999999999 699998764 4567777664 3 7899999      9997 46677775

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.45  E-value=3.4e-13  Score=105.92  Aligned_cols=127  Identities=21%  Similarity=0.168  Sum_probs=74.3

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHh-hcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLE-SLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~g-l~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      ++.+|++++|+||||+||||+++++++ .+.++.|..... ..        -.++|..+-.. ....-+.+..       
T Consensus        27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~--------~~~~~~~~i~~-~~~~~d~~~~-------   89 (222)
T cd03287          27 SAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS--------ATLSIFDSVLT-RMGASDSIQH-------   89 (222)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc--------eEEeccceEEE-EecCcccccc-------
Confidence            567899999999999999999999999 667888875432 11        12333222100 0000000000       


Q ss_pred             CCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccc-hHHHHHHHHhC--CCcEEEEecCCCCCCChhHH
Q 029421           81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSS-FFPAVLRILES--NIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~-~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~  156 (193)
                        ...  ....++.+.-.+  +.-+.++.++|+||| .|.++.... ....+++.+.+  +.++|++      ||+.+..
T Consensus        90 --~~S--tF~~e~~~~~~i--l~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~------TH~~~l~  157 (222)
T cd03287          90 --GMS--TFMVELSETSHI--LSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV------THYPSLG  157 (222)
T ss_pred             --ccc--hHHHHHHHHHHH--HHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE------cccHHHH
Confidence              000  000011100000  113567999999999 588876654 45677777654  7899999      9997655


Q ss_pred             H
Q 029421          157 A  157 (193)
Q Consensus       157 ~  157 (193)
                      .
T Consensus       158 ~  158 (222)
T cd03287         158 E  158 (222)
T ss_pred             H
Confidence            3

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.44  E-value=1.2e-13  Score=117.78  Aligned_cols=53  Identities=21%  Similarity=0.239  Sum_probs=43.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD   62 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~   62 (193)
                      |+|++|.+..|+||||||||+|+|+|.|+.|.-.|...+         ....++.|+||.|+
T Consensus       503 f~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~---------P~~~~mFYIPQRPY  555 (728)
T KOG0064|consen  503 FQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI---------PRPNNIFYIPQRPY  555 (728)
T ss_pred             EEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec---------CCCcceEeccCCCc
Confidence            578999999999999999999999999999886664432         12345899999873

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.43  E-value=1.1e-13  Score=115.38  Aligned_cols=136  Identities=17%  Similarity=0.271  Sum_probs=85.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh--------cccCCCCeEEeceEchhhccCCceeeEEEeecCCcc---cccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--------LKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRR---APLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--------~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~---~~~~   69 (193)
                      |++++|++++++|+|||||||++++|+|.        ++|++|.|.+--..+.         +.+|....+..   +.++
T Consensus       404 L~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~---------a~iPge~Ep~f~~~tile  474 (593)
T COG2401         404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS---------ALIPGEYEPEFGEVTILE  474 (593)
T ss_pred             eEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh---------hccCcccccccCchhHHH
Confidence            57899999999999999999999999996        4678887766322211         12222111111   1111


Q ss_pred             cccCCCCCCCCCCcccceeeehhhhhhhcccc----------cc------------cCCCCCEEEEecC-CCccccccch
Q 029421           70 SINASSPESYRWPTVGRYKVDVASFEAIALPE----------LQ------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      .+         +...++...+.+.+.+.|+.+          ++            ++..|.+++.||- +-||+.+...
T Consensus       475 hl---------~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~r  545 (593)
T COG2401         475 HL---------RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR  545 (593)
T ss_pred             HH---------hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHH
Confidence            00         000111111223333333321          11            6789999999999 7999999876


Q ss_pred             HHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHh
Q 029421          127 FPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLR  160 (193)
Q Consensus       127 ~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~  160 (193)
                      +..-+..++ + |.|++++      ||+.+...+++
T Consensus       546 VArkiselaRe~giTlivv------ThrpEv~~AL~  575 (593)
T COG2401         546 VARKISELAREAGITLIVV------THRPEVGNALR  575 (593)
T ss_pred             HHHHHHHHHHHhCCeEEEE------ecCHHHHhccC
Confidence            666666665 4 9999999      99988777663

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.1e-13  Score=117.56  Aligned_cols=145  Identities=16%  Similarity=0.162  Sum_probs=94.1

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCccccccc-ccCCCCCCCCCC
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS-INASSPESYRWP   82 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~-~~~~~~~~~~~~   82 (193)
                      +.-+.++++|+||+||||+++++.|-+.|..|.+.+.+         +.+++|.+|.-........+ +.+...   ..+
T Consensus       388 e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---------r~ri~~f~Qhhvd~l~~~v~~vd~~~~---~~p  455 (582)
T KOG0062|consen  388 ESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---------RLRIKYFAQHHVDFLDKNVNAVDFMEK---SFP  455 (582)
T ss_pred             chhhhhheeccCchhHHHHHHHHhccCCcccceeeecc---------cceecchhHhhhhHHHHHhHHHHHHHH---hCC
Confidence            33457899999999999999999999999999765432         56788888754322111111 000000   001


Q ss_pred             cccceeeehhhhhhhcccc---------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCc
Q 029421           83 TVGRYKVDVASFEAIALPE---------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIP  139 (193)
Q Consensus        83 ~~~~~~~~~~~l~~~~l~~---------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~t  139 (193)
                      .. ..+.....+..+|++.         ++            ...+|.+|+|||| +-||..+   +.++.+.++. +..
T Consensus       456 G~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds---l~AL~~Al~~F~GG  531 (582)
T KOG0062|consen  456 GK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS---LGALAKALKNFNGG  531 (582)
T ss_pred             CC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH---HHHHHHHHHhcCCc
Confidence            10 0111223444444431         11            5689999999999 5899665   5666677776 778


Q ss_pred             EEEEecCCCCCCChhHHHHHhcC----CCcEEEEe
Q 029421          140 VLASIPAPKSGRDIPAVARLRNH----PGATIFTL  170 (193)
Q Consensus       140 vl~~~~~~~~tHd~~~~~~~~d~----~~~~~~~~  170 (193)
                      ||+|      |||.+++..+|++    .++.+.-+
T Consensus       532 Vv~V------SHd~~fi~~~c~E~Wvve~g~vt~i  560 (582)
T KOG0062|consen  532 VVLV------SHDEEFISSLCKELWVVEDGKVTPI  560 (582)
T ss_pred             EEEE------ECcHHHHhhcCceeEEEcCCcEEee
Confidence            9999      9999999999998    34555443

>TIGR01069 mutS2 MutS2 family protein

Probab=99.42  E-value=2.7e-13  Score=123.18  Aligned_cols=126  Identities=16%  Similarity=0.127  Sum_probs=72.6

Q ss_pred             cccCC-CEEEEEcCCCCcHHHHHHHHHhh-cccCCCC-eEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421            2 AAGAG-KCFLVTGPPGVGKTTLIMRVLES-LKASNPS-LKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPES   78 (193)
Q Consensus         2 ~i~~G-e~~~l~GpnGsGKSTLl~~i~gl-~~~~~G~-i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~   78 (193)
                      ++..+ ++++|+||||+|||||||.|+|. +.+..|. |....         ...++|..+... ....-+++.-    .
T Consensus       317 ~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~---------~~~~~~~d~i~~-~i~~~~si~~----~  382 (771)
T TIGR01069       317 NLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE---------HSEIPYFEEIFA-DIGDEQSIEQ----N  382 (771)
T ss_pred             EeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc---------cccccchhheee-ecChHhHHhh----h
Confidence            45555 89999999999999999999998 5566662 21110         112233222110 0000000000    0


Q ss_pred             CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~~  155 (193)
                      .     ..+  .........+  +..+.+|.++|+||| +|+|+.....+ ..+++.+.+ |.++|++      ||+.+.
T Consensus       383 L-----Stf--S~~m~~~~~i--l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit------TH~~eL  447 (771)
T TIGR01069       383 L-----STF--SGHMKNISAI--LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT------THYKEL  447 (771)
T ss_pred             h-----hHH--HHHHHHHHHH--HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE------CChHHH
Confidence            0     000  0001011111  112358999999999 69999998655 688888876 9999999      999664


Q ss_pred             H
Q 029421          156 V  156 (193)
Q Consensus       156 ~  156 (193)
                      .
T Consensus       448 ~  448 (771)
T TIGR01069       448 K  448 (771)
T ss_pred             H
Confidence            3

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.42  E-value=4.8e-13  Score=123.10  Aligned_cols=49  Identities=14%  Similarity=0.209  Sum_probs=44.2

Q ss_pred             CCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          107 DTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +|+++||||| +|||+..+..+.++++.+.+ |.|||++      +|+++.+. .||+
T Consensus       849 ~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi------~H~~~~i~-~aD~  899 (924)
T TIGR00630       849 GRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI------EHNLDVIK-TADY  899 (924)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------eCCHHHHH-hCCE
Confidence            6999999999 69999999999999998876 9999999      99998774 6887

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.39  E-value=8.7e-13  Score=122.40  Aligned_cols=144  Identities=20%  Similarity=0.246  Sum_probs=104.6

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhccc---CCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKA---SNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~---~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      +++|+.+.++||.|||||||+++++|-+.-   ..|+|.++|.+..+... ++.++|.+|+-  .+.+++.+.+.+...-
T Consensus       138 ~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-~~~~aY~~e~DvH~p~lTVreTldFa~rc  216 (1391)
T KOG0065|consen  138 IKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-KKTVAYNSEQDVHFPELTVRETLDFAARC  216 (1391)
T ss_pred             EcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-CceEEeccccccccceeEEeehhhHHHhc
Confidence            689999999999999999999999998653   35689999998765444 66789998865  5667777766554321


Q ss_pred             CCC---CCccccee----eehhhhhhhcccccc-------------------------cCCCCCEEEEecC-CCcccccc
Q 029421           78 SYR---WPTVGRYK----VDVASFEAIALPELQ-------------------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        78 ~~~---~~~~~~~~----~~~~~l~~~~l~~~~-------------------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      ...   .+...+.+    .....++.+|+....                         ++.+++++.+||+ +|||..+.
T Consensus       217 k~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTa  296 (1391)
T KOG0065|consen  217 KGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTA  296 (1391)
T ss_pred             cCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHH
Confidence            110   11111111    223456666765432                         7899999999999 59999998


Q ss_pred             chHHHHHHHHhC--CCcEEEEecCC
Q 029421          125 SFFPAVLRILES--NIPVLASIPAP  147 (193)
Q Consensus       125 ~~~~~ll~~l~~--g~tvl~~~~~~  147 (193)
                      -++.+.++.+.+  +.|+++++++|
T Consensus       297 l~iik~lr~~a~~~~~t~~vsi~Q~  321 (1391)
T KOG0065|consen  297 FQIIKALRQLAHITGATALVSILQP  321 (1391)
T ss_pred             HHHHHHHHHHHhhhcceEEEEeccC
Confidence            888888888765  89999997653

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.35  E-value=5.3e-12  Score=102.39  Aligned_cols=49  Identities=14%  Similarity=0.102  Sum_probs=43.6

Q ss_pred             CCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          107 DTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       107 ~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +|+++++||| ++||+..+..+.++++.+..+.++|++      ||+... ..+||+
T Consensus       192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~i------sH~~~~-~~~~d~  241 (276)
T cd03241         192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCI------THLPQV-AAMADN  241 (276)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEE------echHHH-HHhcCc
Confidence            9999999999 699999999898888887668899999      999874 568887

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.34  E-value=1.2e-12  Score=90.91  Aligned_cols=66  Identities=21%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~~~~~~~~~~~   73 (193)
                      |++++|++++|+||||||||||++++.      +|++.++|.+.....  ...+..++.+|+.. ..+..+|+.+
T Consensus        10 l~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf-~~ti~~Ni~~   77 (107)
T cd00820          10 VDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPELGL-EIRLRLNIFL   77 (107)
T ss_pred             EEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechhcc-hhhHHhhcee
Confidence            568899999999999999999999986      789999999874332  33455677777632 3344555544

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.32  E-value=8e-12  Score=97.90  Aligned_cols=56  Identities=20%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             CCCCCEEEEecC-CCccccccc-hHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcE
Q 029421          105 GADTDLFVIDEV-GKMELFSSS-FFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGAT  166 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~-~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~  166 (193)
                      +.+|.++|+||| .|.++.... ....+++.+.+  +.++|++      ||+.+.+..++.+.+..
T Consensus       107 ~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~------TH~~el~~~~~~~~~v~  166 (218)
T cd03286         107 ATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS------THYHSLCDEFHEHGGVR  166 (218)
T ss_pred             CCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE------eccHHHHHHhhcCcceE
Confidence            578999999999 599998864 44454676654  8999999      99998888877654433

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=99.27  E-value=7.4e-11  Score=90.29  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRW   81 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      .+++|+.++|+||||||||||+++|+|+++|+.|.+.+.+..-... .....+++.++......               .
T Consensus        21 ~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~-~~~~~~~~~~~~~~~~~---------------~   84 (186)
T cd01130          21 AVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL-PHPNWVRLVTRPGNVEG---------------S   84 (186)
T ss_pred             HHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC-CCCCEEEEEEecCCCCC---------------C
Confidence            4678999999999999999999999999999999888865322111 11223444433211000               0


Q ss_pred             CcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCc-EEEEecC
Q 029421           82 PTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIP-VLASIPA  146 (193)
Q Consensus        82 ~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~t-vl~~~~~  146 (193)
                      ...    ...+.++      ..+-.+|+.++++|..+-+      ..++++....|.. ++.++|.
T Consensus        85 ~~~----~~~~~l~------~~lR~~pd~i~igEir~~e------a~~~~~a~~tGh~g~~~T~Ha  134 (186)
T cd01130          85 GEV----TMADLLR------SALRMRPDRIIVGEVRGGE------ALDLLQAMNTGHPGGMTTIHA  134 (186)
T ss_pred             Ccc----CHHHHHH------HHhccCCCEEEEEccCcHH------HHHHHHHHhcCCCCceeeecC
Confidence            000    0011111      1134689999999984311      2345555545777 8888774

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.27  E-value=1.1e-11  Score=106.14  Aligned_cols=143  Identities=18%  Similarity=0.221  Sum_probs=84.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc----------cCCceeeEEEeecCCccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR----------QGGQRVGFEVVTLDDRRAPLAS   70 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~----------~~~~~ig~~~q~~~~~~~~~~~   70 (193)
                      |++.+|++++|+|+||+|||||+++|+|..+++.|.|.+.|+...+..          ..++.+.|+.+...   ++..+
T Consensus       153 ~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~---~~~~r  229 (438)
T PRK07721        153 LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ---PALMR  229 (438)
T ss_pred             eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC---CHHHH
Confidence            578999999999999999999999999999999999988765532111          12345666654211   11111


Q ss_pred             ccCCC-----CCCCCCCcccceeeehhhhhhhcc--cccccCCCCCEEEEecC--C-CccccccchHHHHHHHHh--C-C
Q 029421           71 INASS-----PESYRWPTVGRYKVDVASFEAIAL--PELQVGADTDLFVIDEV--G-KMELFSSSFFPAVLRILE--S-N  137 (193)
Q Consensus        71 ~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l--~~~~l~~~p~llllDEp--~-~LD~~~~~~~~~ll~~l~--~-g  137 (193)
                      .....     .+.+.... .+--...+.+-++..  .+++       +.+.||  + |+|+.....+.++++.+.  + |
T Consensus       230 ~~~~~~a~~iAEyfr~~g-~~Vll~~Dsltr~A~A~rEis-------l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G  301 (438)
T PRK07721        230 IKGAYTATAIAEYFRDQG-LNVMLMMDSVTRVAMAQREIG-------LAVGEPPTTKGYTPSVFAILPKLLERTGTNASG  301 (438)
T ss_pred             HHHHHHHHHHHHHHHHCC-CcEEEEEeChHHHHHHHHHHH-------HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence            00000     00000000 000001111111110  0111       123477  3 999999999999998876  3 7


Q ss_pred             C-----cEEEEecCCCCCCChhHHHHHhcC
Q 029421          138 I-----PVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       138 ~-----tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .     ||++.      +||+++  .+||+
T Consensus       302 sIT~~~TVlv~------~hdm~e--~i~d~  323 (438)
T PRK07721        302 SITAFYTVLVD------GDDMNE--PIADT  323 (438)
T ss_pred             CeeeEEEEEEE------CCCCCc--hhhhh
Confidence            5     88999      999874  67886

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.24  E-value=5.4e-12  Score=99.76  Aligned_cols=131  Identities=17%  Similarity=0.135  Sum_probs=68.6

Q ss_pred             ccCCCEEEEEcCCCCcHHHH-HHHHHhhcccCCCCeEEeceEch-hhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTL-IMRVLESLKASNPSLKVQGFYTG-EIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTL-l~~i~gl~~~~~G~i~~~g~~~~-~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      +++|++++|+|+|||||||| ++.+++..++....+++...... ........+|+..+..... ..+...... +... 
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~-~~l~~~~~~-~~~~-   97 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLIS-GKLLYIPVY-PLLS-   97 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhc-CcEEEEEec-cccc-
Confidence            67899999999999999999 68889887765555555543321 1111112344422211000 000000000 0000 


Q ss_pred             CCcccceeeehhhhhhhcccccccCCCCCEEEEecCC-Cc----cccccchHHHHHHHHhC-CCcEEEE
Q 029421           81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVG-KM----ELFSSSFFPAVLRILES-NIPVLAS  143 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~-~L----D~~~~~~~~~ll~~l~~-g~tvl~~  143 (193)
                       ............++..      -..+|+++++|||+ .+    |+.....+.++++.+++ |.|++++
T Consensus        98 -~~~~~~~~l~~il~~~------~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t  159 (230)
T PRK08533         98 -GNSEKRKFLKKLMNTR------RFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT  159 (230)
T ss_pred             -ChHHHHHHHHHHHHHH------HhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE
Confidence             0000000011111111      12579999999994 66    55555667777777766 8876665

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.23  E-value=7.8e-11  Score=97.01  Aligned_cols=39  Identities=21%  Similarity=0.474  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ   40 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~   40 (193)
                      .+..|+.++|+||+|||||||+++|++.++++.|.+.+.
T Consensus       140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie  178 (308)
T TIGR02788       140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE  178 (308)
T ss_pred             HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence            356799999999999999999999999999988877664

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.20  E-value=4.2e-11  Score=109.25  Aligned_cols=53  Identities=17%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             CCCCEEEEecC-CCccccccchH-HHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCCC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFF-PAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPG  164 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~  164 (193)
                      .+|.++|+||| .|+|+.....+ ..++..+.+ |.++|++      ||+.+.....+++..
T Consensus       406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit------TH~~el~~~~~~~~~  461 (782)
T PRK00409        406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT------THYKELKALMYNREG  461 (782)
T ss_pred             CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE------CChHHHHHHHhcCCC
Confidence            68999999999 69999987544 667777766 8999999      999877776666644

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.19  E-value=4.5e-11  Score=90.25  Aligned_cols=58  Identities=19%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPG  173 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~  173 (193)
                      .+.-+.+|||| ++|.|.-+-.+...++.+.+ |.-+|++      ||..- +..   .++..++.+..+
T Consensus       145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiA------THSPi-LlA---iP~A~I~~~~~~  204 (233)
T COG3910         145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIA------THSPI-LLA---IPGAEIYEISES  204 (233)
T ss_pred             ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEE------ecChh-hee---CCCcEEEEEecC
Confidence            46679999999 89999988889999999987 9999999      88743 322   255555554443

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.15  E-value=2.8e-11  Score=103.44  Aligned_cols=43  Identities=14%  Similarity=0.163  Sum_probs=39.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEeceEch
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGFYTG   45 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~~~~   45 (193)
                      |++++||+++|+|||||||||||+  +|+..|++| +|.++|.++.
T Consensus        27 l~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        27 KELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF   70 (504)
T ss_pred             eeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence            578999999999999999999999  788888888 6999999874

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.13  E-value=6.4e-11  Score=99.25  Aligned_cols=139  Identities=19%  Similarity=0.292  Sum_probs=80.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEeceEchhhccCCceeeEEEeecCCccccccc------c--cCCCC
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLAS------I--NASSP   76 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~------~--~~~~~   76 (193)
                      .|++..+|.||.|||||+++++|.++|+.| +|...            .++|=||...+......+      +  .+...
T Consensus       367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~l------------nVSykpqkispK~~~tvR~ll~~kIr~ay~~p  434 (592)
T KOG0063|consen  367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVL------------NVSYKPQKISPKREGTVRQLLHTKIRDAYMHP  434 (592)
T ss_pred             ceeEEEEccCCcchhHHHHHHhcCCCCCccCccccc------------ceeccccccCccccchHHHHHHHHhHhhhcCH
Confidence            468999999999999999999999999876 33222            233333332111110000      0  00000


Q ss_pred             CCCC---CCcccceeeeh-------hhhhhhcccccccCCCCCEEEEecC-CCccccccchHHHHHHHH--hCCCcEEEE
Q 029421           77 ESYR---WPTVGRYKVDV-------ASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRIL--ESNIPVLAS  143 (193)
Q Consensus        77 ~~~~---~~~~~~~~~~~-------~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l--~~g~tvl~~  143 (193)
                      .+..   .+.......+.       .-++++.+. +-+-..+++++.||| .-||...+......++..  +.++|-.+|
T Consensus       435 qF~~dvmkpL~ie~i~dqevq~lSggelQRval~-KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvV  513 (592)
T KOG0063|consen  435 QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALA-LCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVV  513 (592)
T ss_pred             HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHH-HhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhh
Confidence            0000   00000000000       011111111 115577899999999 599999887777777663  448899999


Q ss_pred             ecCCCCCCChhHHHHHhcCC
Q 029421          144 IPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       144 ~~~~~~tHd~~~~~~~~d~~  163 (193)
                            .||+-.+..++|++
T Consensus       514 ------EhdfImaTYladrv  527 (592)
T KOG0063|consen  514 ------EHDFIMATYLADRV  527 (592)
T ss_pred             ------hhHHHHHHhhccee
Confidence                  99988888889984

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.2e-11  Score=104.11  Aligned_cols=51  Identities=14%  Similarity=0.195  Sum_probs=45.6

Q ss_pred             cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      |..+|.+|+|||| +.||..+...+.+.++-|+  +|+++|      |||-.++..+|..
T Consensus       427 LflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIV------SHDQgFLD~VCtd  478 (807)
T KOG0066|consen  427 LFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIV------SHDQGFLDSVCTD  478 (807)
T ss_pred             HhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEE------ecccchHHHHHHH
Confidence            6789999999999 5999998888888888886  499999      9999999999986

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.10  E-value=1.3e-10  Score=90.91  Aligned_cols=51  Identities=10%  Similarity=0.175  Sum_probs=37.4

Q ss_pred             CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ..++++++|||+ ++||...+..+..+++.+.++.-+|++      ||+. .....||+
T Consensus       156 ~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~------Th~~-~~~~~a~~  207 (220)
T PF02463_consen  156 YKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIIT------THNP-EMFEDADK  207 (220)
T ss_dssp             CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-------S-H-HHHTT-SE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc------cccc-cccccccc
Confidence            357899999999 799999999999999988767889999      9995 45556665

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.02  E-value=5e-10  Score=108.35  Aligned_cols=48  Identities=23%  Similarity=0.293  Sum_probs=43.1

Q ss_pred             CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          108 TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       108 p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.+++|||| +||++.....+..+++.+.+ |.|||++      +||++.+.. ||+
T Consensus      1721 ~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi------eH~~~~i~~-aD~ 1770 (1809)
T PRK00635       1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI------DHDPALLKQ-ADY 1770 (1809)
T ss_pred             CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE------eCCHHHHHh-CCE
Confidence            689999999 69999999999999998877 9999999      999887765 887

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.01  E-value=2.1e-10  Score=89.45  Aligned_cols=33  Identities=9%  Similarity=0.090  Sum_probs=29.2

Q ss_pred             cCCCCCEEEEecCC------CccccccchHHHHHHHHhC
Q 029421          104 VGADTDLFVIDEVG------KMELFSSSFFPAVLRILES  136 (193)
Q Consensus       104 l~~~p~llllDEp~------~LD~~~~~~~~~ll~~l~~  136 (193)
                      ++.+|+++++|||+      +||+..++.+.++++.++.
T Consensus       167 l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        167 LTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            77899999999995      6999999999999988764

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.01  E-value=1.1e-09  Score=88.64  Aligned_cols=46  Identities=11%  Similarity=0.216  Sum_probs=35.5

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHh
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLR  160 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~  160 (193)
                      .+|+++++||| ++||+..+..+...++.+  + .++++      +|+...+..+|
T Consensus       209 ~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~ii~------~~~~~~~~~~~  255 (270)
T cd03242         209 GEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QTFVT------TTDLADFDALW  255 (270)
T ss_pred             CCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CEEEE------eCCchhccchh
Confidence            69999999999 699999887777766654  3 46666      66767777766

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.97  E-value=3.3e-10  Score=83.52  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      +++|.||||+||||+++.+++...+..+.+.+..
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   34 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD   34 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence            4789999999999999999999877666665544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.96  E-value=4.6e-09  Score=81.18  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEec
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQG   41 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g   41 (193)
                      ++.|+||+||||||+++.+++.+.+. .|.|...+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e   37 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE   37 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence            78999999999999999999888653 45655443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.95  E-value=1.2e-09  Score=97.58  Aligned_cols=50  Identities=14%  Similarity=0.241  Sum_probs=42.8

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ....++||||| +||-....+.+.+++..+.. |-|||++      .|+++.+ +-||+
T Consensus       842 tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI------EHNLdVI-k~AD~  893 (935)
T COG0178         842 TGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI------EHNLDVI-KTADW  893 (935)
T ss_pred             CCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------ecccceE-eecCE
Confidence            34589999999 69999988888899988876 9999999      9998755 46887

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.84  E-value=1.5e-08  Score=87.56  Aligned_cols=34  Identities=29%  Similarity=0.462  Sum_probs=30.6

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS   36 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~   36 (193)
                      ++.|.+++++||||+||||++..|++.+....|.
T Consensus       253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~  286 (484)
T PRK06995        253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA  286 (484)
T ss_pred             ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence            5678999999999999999999999998777764

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.78  E-value=4.8e-09  Score=80.19  Aligned_cols=53  Identities=21%  Similarity=0.350  Sum_probs=37.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeec
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTL   61 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~   61 (193)
                      |++++|+||||||||||+++|++...+   .+.+.+..+....  .....+++.+|++
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF   56 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence            789999999999999999999998765   4666665543221  1123455655543

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.77  E-value=2.6e-09  Score=81.23  Aligned_cols=44  Identities=18%  Similarity=0.151  Sum_probs=34.5

Q ss_pred             CCCCCEEEEecC-CCcc---ccccchHHHHHHHHhC-CCcEEEEecCCCCCCChh
Q 029421          105 GADTDLFVIDEV-GKME---LFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIP  154 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD---~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~  154 (193)
                      ..+|+++++||| +.+|   ...+..+..+++.+++ |.|+|++      +|+..
T Consensus        93 ~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v------~~~~~  141 (187)
T cd01124          93 EFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLT------SEQSG  141 (187)
T ss_pred             HhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEE------ecccc
Confidence            358999999999 4777   5555667778888776 9999999      77654

A related protein is found in archaea.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.76  E-value=2.9e-08  Score=70.57  Aligned_cols=30  Identities=40%  Similarity=0.717  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASN   34 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~   34 (193)
                      .+..+.|+||+|+||||+++.++..+....
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~   30 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPG   30 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence            367899999999999999999999876654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.75  E-value=9.7e-09  Score=87.87  Aligned_cols=60  Identities=18%  Similarity=0.149  Sum_probs=47.8

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec---eEchhh------ccCCceeeEEEeec
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG---FYTGEI------RQGGQRVGFEVVTL   61 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g---~~~~~~------~~~~~~ig~~~q~~   61 (193)
                      +|.+|++++|+||||||||||+++|+++.+|+.|.|.+.|   .++...      ...++.++|++|..
T Consensus       161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd  229 (450)
T PRK06002        161 PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD  229 (450)
T ss_pred             eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence            5789999999999999999999999999999999888865   443211      11245789999854

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.74  E-value=1.2e-08  Score=77.51  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      +|++++|+|+|||||||++++|++++.+    +.++|.+.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~   37 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL   37 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence            6999999999999999999999999866    57777665

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.73  E-value=8e-08  Score=80.33  Aligned_cols=38  Identities=24%  Similarity=0.407  Sum_probs=30.0

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEec
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQG   41 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g   41 (193)
                      .++..+.|.||+||||||+++.+.+.+.+ ..+.|...+
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE  158 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE  158 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence            45779999999999999999999987763 456655443

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.73  E-value=1.1e-08  Score=80.81  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC----eEEeceE
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPS----LKVQGFY   43 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~----i~~~g~~   43 (193)
                      +..+++|.||||||||||++.|+++++++.|.    +.++++.
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~   74 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH   74 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence            46799999999999999999999999999998    5555543

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.73  E-value=1e-08  Score=64.08  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=27.0

Q ss_pred             cccC-CCEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421            2 AAGA-GKCFLVTGPPGVGKTTLIMRVLESLKASN   34 (193)
Q Consensus         2 ~i~~-Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~   34 (193)
                      ++.+ |+++.|+|||||||||++.+|.=++-+..
T Consensus        18 ~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   18 DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             eecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            3443 67999999999999999999987776543

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.72  E-value=1.3e-08  Score=78.66  Aligned_cols=28  Identities=36%  Similarity=0.623  Sum_probs=26.4

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++|++++|+||||||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999875

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.72  E-value=1.3e-08  Score=80.52  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=23.1

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHH
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~   27 (193)
                      +++|.++.|.|++|||||||...++
T Consensus        22 ~~~g~~~~i~G~~GsGKt~l~~~~~   46 (234)
T PRK06067         22 IPFPSLILIEGDHGTGKSVLSQQFV   46 (234)
T ss_pred             CcCCcEEEEECCCCCChHHHHHHHH
Confidence            5789999999999999999999884

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.72  E-value=1.5e-07  Score=78.95  Aligned_cols=29  Identities=28%  Similarity=0.517  Sum_probs=26.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      .+|..++|+||+||||||++++|++.+.+
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~  160 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAE  160 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46889999999999999999999999853

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR00235 udk uridine kinase

Probab=98.70  E-value=1.5e-08  Score=78.82  Aligned_cols=29  Identities=31%  Similarity=0.429  Sum_probs=27.4

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      ++|++++|+||||||||||++.|++++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            67999999999999999999999999876

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.70  E-value=1.9e-08  Score=79.24  Aligned_cols=58  Identities=24%  Similarity=0.387  Sum_probs=36.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHH-hhcccCCCCeEEeceEc-hhhccCCceeeEEEee
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVL-ESLKASNPSLKVQGFYT-GEIRQGGQRVGFEVVT   60 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~-gl~~~~~G~i~~~g~~~-~~~~~~~~~ig~~~q~   60 (193)
                      +++|++++|.||+|||||||...++ ..+.+..+.+++..... .......+.+|+.++.
T Consensus        17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~   76 (229)
T TIGR03881        17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEK   76 (229)
T ss_pred             CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHH
Confidence            6789999999999999999998665 23344444466655433 1222223345555543

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.69  E-value=1.8e-08  Score=82.12  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=32.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcc--cCCCCeEEeceE
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLK--ASNPSLKVQGFY   43 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~--~~~G~i~~~g~~   43 (193)
                      -.++||.||||||||||+++|.+++.  |++|.+.+.+.+
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D  101 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD  101 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence            46899999999999999999999998  778887764443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.69  E-value=2e-08  Score=78.52  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421          109 DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus       109 ~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~  155 (193)
                      .++++||| .+|.|..+..+.+++..... +.-||++      ||+...
T Consensus       259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~Qviit------THSp~i  301 (303)
T PF13304_consen  259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIIT------THSPFI  301 (303)
T ss_dssp             SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEE------ES-GGG
T ss_pred             eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEe------Cccchh
Confidence            99999999 79999998888888888776 8999999      887543

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.68  E-value=7.1e-08  Score=89.18  Aligned_cols=51  Identities=18%  Similarity=0.231  Sum_probs=37.9

Q ss_pred             CCCCCEEEEecC-CCccccc-cchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          105 GADTDLFVIDEV-GKMELFS-SSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~-~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.++.++|+||| .|-++.. .....++++.+.+  +.++|++      ||+ .++..++++
T Consensus       684 at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~a------TH~-~el~~l~~~  738 (854)
T PRK05399        684 ATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFA------THY-HELTELEEK  738 (854)
T ss_pred             CCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEE------ech-HHHHHHhhh
Confidence            568899999999 3655544 3567788888765  5889999      888 556667664

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.67  E-value=2.3e-08  Score=82.61  Aligned_cols=57  Identities=25%  Similarity=0.126  Sum_probs=44.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--------ccCCceeeEEEee
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--------RQGGQRVGFEVVT   60 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--------~~~~~~ig~~~q~   60 (193)
                      .+|++++++|||||||||++..|++.+.+..++|.+.+.+....        +..+..+.++++.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~  176 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK  176 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC
Confidence            36899999999999999999999999998888999887765211        1223456677663

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.64  E-value=1.4e-08  Score=86.61  Aligned_cols=44  Identities=25%  Similarity=0.328  Sum_probs=39.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      |++.+|+.++|+|+||+|||||+++|++..+++.|.|.+.|+..
T Consensus       151 l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg  194 (432)
T PRK06793        151 LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG  194 (432)
T ss_pred             ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc
Confidence            57889999999999999999999999999999999887776553

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.63  E-value=2e-07  Score=86.05  Aligned_cols=48  Identities=17%  Similarity=0.246  Sum_probs=41.5

Q ss_pred             cCCCCCEEEEecC-CCc-cccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHH
Q 029421          104 VGADTDLFVIDEV-GKM-ELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVA  157 (193)
Q Consensus       104 l~~~p~llllDEp-~~L-D~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~  157 (193)
                      +..+|.++++||| .+| |+..+..+.+.++.+++ |.+++++      ||++..+.
T Consensus       649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~------Tq~~~d~~  699 (818)
T PRK13830        649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLA------TQSISDAE  699 (818)
T ss_pred             cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEE------eCCHHHHh
Confidence            3579999999999 699 68888899999998876 9999999      99988775

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.60  E-value=3.9e-08  Score=77.26  Aligned_cols=36  Identities=25%  Similarity=0.440  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEE---eceE
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKV---QGFY   43 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~---~g~~   43 (193)
                      ++||.||||||||||++.|++++.+  .++.+.+   +|+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            5899999999999999999999975  4566655   6554

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.59  E-value=6.5e-08  Score=82.81  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=49.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC---CCeEEeceEchh-----hccCCceeeEEEeecC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN---PSLKVQGFYTGE-----IRQGGQRVGFEVVTLD   62 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~---G~i~~~g~~~~~-----~~~~~~~ig~~~q~~~   62 (193)
                      |++.+|++++|+|+||+|||||+++|+++.+++.   |.|.+.|.++..     .....+..+++++...
T Consensus       170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a  239 (455)
T PRK07960        170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA  239 (455)
T ss_pred             ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence            5789999999999999999999999999999875   778788877633     1222355677887653

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.58  E-value=2.8e-07  Score=84.98  Aligned_cols=49  Identities=14%  Similarity=0.284  Sum_probs=40.9

Q ss_pred             cCCCCCEEEEecC-CCcc-ccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHH
Q 029421          104 VGADTDLFVIDEV-GKME-LFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus       104 l~~~p~llllDEp-~~LD-~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~  158 (193)
                      +..+|.++++||| ..+| +.....+.+.++.+++ |..++++      ||++.++..
T Consensus       639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~------TQ~~~d~~~  690 (800)
T PRK13898        639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFA------TQSVEDASK  690 (800)
T ss_pred             hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEE------eCCHHHHHh
Confidence            4568999999999 6888 6667788899988876 8899999      899877654

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.57  E-value=4.9e-08  Score=83.42  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP   35 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G   35 (193)
                      |++.+|++++|+|+||+|||||+++|+|..+++.+
T Consensus       150 l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~  184 (434)
T PRK07196        150 LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV  184 (434)
T ss_pred             EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence            57899999999999999999999999999988753

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.56  E-value=5.9e-08  Score=81.78  Aligned_cols=53  Identities=13%  Similarity=0.224  Sum_probs=45.6

Q ss_pred             cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .++++++.++||| +.||...+......++.+-. +.=||+|      .||+..+..++|-
T Consensus       228 ~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVV------EHDLsVLDylSDF  282 (592)
T KOG0063|consen  228 CVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVV------EHDLSVLDYLSDF  282 (592)
T ss_pred             hhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEE------EeechHHHhhhcc
Confidence            5689999999999 69999988777788888766 8888999      9999988888875

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.55  E-value=9.7e-08  Score=72.32  Aligned_cols=33  Identities=33%  Similarity=0.606  Sum_probs=28.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      |++++|+||||||||||++.|++.+.+. |.+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~   33 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF   33 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence            6789999999999999999999987654 55554

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.52  E-value=4.1e-08  Score=79.54  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      +++|+|+||||||||++.|++++++..|.+..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~   32 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC   32 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence            58999999999999999999999988665433

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.52  E-value=2.1e-07  Score=66.71  Aligned_cols=27  Identities=44%  Similarity=0.664  Sum_probs=24.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+..+.|+||+|+||||+++.++..+.
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            477899999999999999999998875

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.51  E-value=1.2e-07  Score=79.68  Aligned_cols=57  Identities=18%  Similarity=0.179  Sum_probs=44.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEee
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVT   60 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~   60 (193)
                      +.+|++++|+|+||+|||||++.|+|...++.|+|.+++...... ...+.++++++.
T Consensus       192 L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t-t~~~~l~~l~~~  248 (356)
T PRK01889        192 LSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT-TTHRELHPLPSG  248 (356)
T ss_pred             hhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch-hhhccEEEecCC
Confidence            567999999999999999999999999999999999876432111 123456666654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.51  E-value=1.2e-07  Score=73.01  Aligned_cols=34  Identities=29%  Similarity=0.455  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      +++|+||||||||||+++|++++  ..|.+.+.+.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D   34 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD   34 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence            58999999999999999999998  34556555444

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.50  E-value=1.5e-07  Score=80.39  Aligned_cols=61  Identities=21%  Similarity=0.285  Sum_probs=47.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC---CCeEEeceEchhh----c--cCCceeeEEEeec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN---PSLKVQGFYTGEI----R--QGGQRVGFEVVTL   61 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~---G~i~~~g~~~~~~----~--~~~~~ig~~~q~~   61 (193)
                      +++.+|++++|+|+||+|||||+++|++...++.   |.|-..|.++...    .  ...+++++++...
T Consensus       146 l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s  215 (428)
T PRK08149        146 LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS  215 (428)
T ss_pred             eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence            4688999999999999999999999999988876   6677777765321    1  1236778887654

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.50  E-value=1.2e-07  Score=73.16  Aligned_cols=55  Identities=22%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEeceEchhhccCCceeeEEEee
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVT   60 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~   60 (193)
                      .+|.+++|+|+||||||||.+.|++.+.+. .|.+.++|.++....  ...++|.+|+
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~--~~~~~~~~~~   77 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGL--CSDLGFSDAD   77 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhh--hhcCCcCccc
Confidence            578999999999999999999999987654 357888886653211  1235666554

>PLN02796 D-glycerate 3-kinase

Probab=98.49  E-value=1.1e-07  Score=78.79  Aligned_cols=41  Identities=32%  Similarity=0.575  Sum_probs=35.1

Q ss_pred             cCCCE-----EEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEc
Q 029421            4 GAGKC-----FLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYT   44 (193)
Q Consensus         4 ~~Ge~-----~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~   44 (193)
                      ++|+.     ++|+|+||||||||++.|.+++++.   .|.|.++|+..
T Consensus        93 ~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL  141 (347)
T PLN02796         93 KDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL  141 (347)
T ss_pred             ccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence            35665     9999999999999999999999874   57788888875

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.49  E-value=2e-07  Score=78.35  Aligned_cols=30  Identities=33%  Similarity=0.507  Sum_probs=26.7

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+++|.+++++||||+||||++..|++.+.
T Consensus       133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        133 LMERGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999998753

>TIGR00606 rad50 rad50

Probab=98.48  E-value=1.9e-07  Score=90.11  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=38.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH----hhcccC-CCCeEEeceEchhhccCCceeeEEEee
Q 029421            7 KCFLVTGPPGVGKTTLIMRVL----ESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVT   60 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~----gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~   60 (193)
                      .+++|+|||||||||++.+|.    |..+|. .|.+.+.+..+.........+.+.|++
T Consensus        29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a~V~l~F~~   87 (1311)
T TIGR00606        29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRD   87 (1311)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhheeEEEEEc
Confidence            499999999999999999994    999985 688777665432222223445555543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.47  E-value=1.1e-07  Score=78.51  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=38.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      |.+.+|+.++|+|+||+|||||+++|+|...++.|.+...|+.
T Consensus        64 ~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          64 LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            4688999999999999999999999999999988877766643

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.47  E-value=1.4e-07  Score=80.52  Aligned_cols=44  Identities=20%  Similarity=0.244  Sum_probs=40.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      |++.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|...
T Consensus       135 ~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~  178 (418)
T TIGR03498       135 LPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG  178 (418)
T ss_pred             ccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence            57899999999999999999999999999999999888888764

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR00416 sms DNA repair protein RadA

Probab=98.45  E-value=1.2e-07  Score=81.92  Aligned_cols=42  Identities=33%  Similarity=0.520  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC-eEEeceEc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS-LKVQGFYT   44 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~-i~~~g~~~   44 (193)
                      +.+|+++.|.|++|+|||||+..++.......+. +++.++..
T Consensus        91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs  133 (454)
T TIGR00416        91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES  133 (454)
T ss_pred             ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence            5789999999999999999999998876655455 46666543

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK06893 DNA replication initiation factor; Validated

Probab=98.43  E-value=2.1e-06  Score=67.81  Aligned_cols=75  Identities=12%  Similarity=0.076  Sum_probs=43.8

Q ss_pred             CCCCEEEEecCCC--ccccccchHHHHHHHHhC-CCcEEEEecCCCCCCCh--hHH----HHHhcCCC-cEEEEeCCCCh
Q 029421          106 ADTDLFVIDEVGK--MELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDI--PAV----ARLRNHPG-ATIFTLSPGNR  175 (193)
Q Consensus       106 ~~p~llllDEp~~--LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~--~~~----~~~~d~~~-~~~~~~~~~~~  175 (193)
                      .++++|++||+..  -+......+..++....+ |++++++      |++.  ...    ..++.|.. +.++.+.+++.
T Consensus        90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illi------ts~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~  163 (229)
T PRK06893         90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLI------SADCSPHALSIKLPDLASRLTWGEIYQLNDLTD  163 (229)
T ss_pred             ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEE------eCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence            4678999999943  244334567777777665 7777665      3432  111    24455532 45666777776


Q ss_pred             hHHHHHHHHHH
Q 029421          176 DSLKDNIYYQL  186 (193)
Q Consensus       176 ~~l~~~~~~~~  186 (193)
                      ++..+-+.+..
T Consensus       164 e~~~~iL~~~a  174 (229)
T PRK06893        164 EQKIIVLQRNA  174 (229)
T ss_pred             HHHHHHHHHHH
Confidence            65555544433

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.41  E-value=3.7e-07  Score=69.08  Aligned_cols=26  Identities=42%  Similarity=0.755  Sum_probs=24.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      |++++|+||||||||||++.|++..+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.41  E-value=3.3e-07  Score=75.24  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      .|.+++++|+||+|||||++.|+|...+..|+|..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~  197 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE  197 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence            58899999999999999999999999999999876

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.40  E-value=1.7e-07  Score=80.13  Aligned_cols=44  Identities=27%  Similarity=0.383  Sum_probs=39.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      |++.+|+.++|+|+||+|||||+++|++..+++.|.+.+.|..-
T Consensus       150 l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg  193 (433)
T PRK07594        150 ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193 (433)
T ss_pred             eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence            57899999999999999999999999999999988777777643

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.38  E-value=2.7e-07  Score=79.12  Aligned_cols=44  Identities=25%  Similarity=0.355  Sum_probs=39.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      |++.+|++++|+|+||+|||||+++|++...++.|.+.+.|+..
T Consensus       158 ~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~  201 (441)
T PRK09099        158 MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG  201 (441)
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence            46889999999999999999999999999999988888888653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.38  E-value=3.3e-07  Score=74.79  Aligned_cols=34  Identities=35%  Similarity=0.552  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      +++++++|+||+|||||++.|.|...++.|++..
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~  194 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE  194 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence            6899999999999999999999999999998875

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.38  E-value=5.1e-07  Score=76.19  Aligned_cols=41  Identities=32%  Similarity=0.528  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe-EEeceE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL-KVQGFY   43 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i-~~~g~~   43 (193)
                      +.+|+++.|.|++|+|||||+..++..+....+.+ ++.++.
T Consensus        79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE  120 (372)
T cd01121          79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE  120 (372)
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            56899999999999999999999998877665565 445544

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.38  E-value=1.7e-06  Score=80.31  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=42.1

Q ss_pred             cCCCCCEEEEecC-CCc-cccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHH
Q 029421          104 VGADTDLFVIDEV-GKM-ELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus       104 l~~~p~llllDEp-~~L-D~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~  158 (193)
                      +..+|.++++||| .++ |+..+..+.+.++.+++ |.+++++      ||++.++..
T Consensus       684 l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~------TQs~~d~~~  735 (852)
T PRK13891        684 LKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMA------TQSLSDAAN  735 (852)
T ss_pred             hcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHhh
Confidence            5679999999999 688 68888889999988876 8999999      999887754

>PRK05922 type III secretion system ATPase; Validated

Probab=98.38  E-value=3.2e-07  Score=78.47  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=38.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      +++.+|+.++|+|+||+|||||+++|++..+++.|.+...|..
T Consensus       152 l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer  194 (434)
T PRK05922        152 LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER  194 (434)
T ss_pred             EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence            4688999999999999999999999999999988877665543

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.38  E-value=6.9e-06  Score=62.28  Aligned_cols=46  Identities=15%  Similarity=0.274  Sum_probs=35.1

Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcC-CCcEEEEeCCCChhHHHHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNH-PGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~-~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      ..+++|..||+-       -|+.-+.++.++ +++..+++.|++.++|.+++..
T Consensus        88 ~~~~~G~~vild-------Id~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~  134 (191)
T COG0194          88 QALAEGKDVILD-------IDVQGALQVKKKMPNAVSIFILPPSLEELERRLKG  134 (191)
T ss_pred             HHHhcCCeEEEE-------EehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHc
Confidence            445568888886       377778877776 4677889999999999888754

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.37  E-value=3.2e-07  Score=78.88  Aligned_cols=44  Identities=23%  Similarity=0.318  Sum_probs=38.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      |++.+|+.++|+|+||+|||||+++|++..+++.|.+...|+..
T Consensus       158 ~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~  201 (440)
T TIGR01026       158 LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERG  201 (440)
T ss_pred             cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecc
Confidence            57899999999999999999999999999999888776666543

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.36  E-value=5e-07  Score=70.18  Aligned_cols=27  Identities=30%  Similarity=0.373  Sum_probs=25.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++.+++|.|+||||||||.+.|++.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999999987

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.36  E-value=3.3e-07  Score=78.53  Aligned_cols=43  Identities=23%  Similarity=0.328  Sum_probs=38.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      |++.+|+.++|+|+||+|||||+++|++...++.|.+...|..
T Consensus       140 ~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~  182 (422)
T TIGR02546       140 LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER  182 (422)
T ss_pred             ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence            5788999999999999999999999999999998888776554

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.35  E-value=1e-06  Score=69.96  Aligned_cols=46  Identities=17%  Similarity=0.133  Sum_probs=31.7

Q ss_pred             CCCCCEEEEecC-CCcccccc-chHHHHHHHHhC--CCcEEEEecCCCCCCChhHH
Q 029421          105 GADTDLFVIDEV-GKMELFSS-SFFPAVLRILES--NIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~  156 (193)
                      +.+..++|+||+ .|-++... .....+++.+.+  +..++++      ||+.+..
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~------TH~~~l~  169 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIA------THFHELA  169 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEE------ES-GGGG
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEE------eccchhH
Confidence            345679999999 58887775 567778877753  7888999      7776543

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.35  E-value=4.7e-07  Score=79.00  Aligned_cols=43  Identities=30%  Similarity=0.444  Sum_probs=39.2

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      .+..|++++++||||||||||++.|.|+++|.+|+..+.+..+
T Consensus       206 aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        206 TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence            5678999999999999999999999999999999998877655

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.35  E-value=8.9e-07  Score=70.27  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      |.+..|+||+|+|||||.-.++-
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~   23 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLAL   23 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHH
Confidence            67889999999999999998863

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=98.34  E-value=2.1e-06  Score=79.31  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=36.5

Q ss_pred             CCCCCEEEEecC-CCcccccc-chHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhc
Q 029421          105 GADTDLFVIDEV-GKMELFSS-SFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRN  161 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d  161 (193)
                      +.++.++|+||+ .|.++..- ....++++.+.+  |..++++      ||..+ +..+++
T Consensus       669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~------TH~~e-L~~l~~  722 (840)
T TIGR01070       669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFA------THYFE-LTALEE  722 (840)
T ss_pred             CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEE------cCchH-HHHHhh
Confidence            567899999999 48887775 456777777654  7889999      78754 334544

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.34  E-value=5.6e-06  Score=72.35  Aligned_cols=29  Identities=31%  Similarity=0.560  Sum_probs=25.9

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +++|++++|+||+|+||||++..|+..+.
T Consensus       347 l~~G~vIaLVGPtGvGKTTtaakLAa~la  375 (559)
T PRK12727        347 LERGGVIALVGPTGAGKTTTIAKLAQRFA  375 (559)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999988654

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.34  E-value=4.6e-06  Score=72.01  Aligned_cols=74  Identities=12%  Similarity=0.151  Sum_probs=46.9

Q ss_pred             CCCEEEEecC-CCccccc-cchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC----C-CcEEEEeCCCChhHH
Q 029421          107 DTDLFVIDEV-GKMELFS-SSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH----P-GATIFTLSPGNRDSL  178 (193)
Q Consensus       107 ~p~llllDEp-~~LD~~~-~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~----~-~~~~~~~~~~~~~~l  178 (193)
                      ++++|++||+ ..++... +..+..++..+.+ |+.+|++.     .|+...+..+.++    . .+.++.+.+++.+..
T Consensus       194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIits-----d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r  268 (440)
T PRK14088        194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS-----DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR  268 (440)
T ss_pred             cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEEC-----CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence            6899999999 4555443 4567777777765 77888871     3676666555544    2 355667777666544


Q ss_pred             HHHHHHH
Q 029421          179 KDNIYYQ  185 (193)
Q Consensus       179 ~~~~~~~  185 (193)
                      .+-+.++
T Consensus       269 ~~IL~~~  275 (440)
T PRK14088        269 KKIARKM  275 (440)
T ss_pred             HHHHHHH
Confidence            4444333

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.34  E-value=8.4e-06  Score=64.65  Aligned_cols=128  Identities=14%  Similarity=0.153  Sum_probs=74.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTV   84 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~   84 (193)
                      .+..+.|.||+|||||+|++.++...... |                .++.|++-+.      ...           .  
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~----------------~~v~y~~~~~------~~~-----------~--   87 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQR-G----------------RAVGYVPLDK------RAW-----------F--   87 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhC-C----------------CeEEEEEHHH------Hhh-----------h--
Confidence            45688999999999999999988653211 1                1233432210      000           0  


Q ss_pred             cceeeehhhhhhhcccccccCCCCCEEEEecCC--CccccccchHHHHHHHHhC-CC-cEEEEecCCCCCCChhH-----
Q 029421           85 GRYKVDVASFEAIALPELQVGADTDLFVIDEVG--KMELFSSSFFPAVLRILES-NI-PVLASIPAPKSGRDIPA-----  155 (193)
Q Consensus        85 ~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~--~LD~~~~~~~~~ll~~l~~-g~-tvl~~~~~~~~tHd~~~-----  155 (193)
                           ..+.++.        ..+.+++++||..  .-++.....+..++..+.+ |+ ++|++      ++....     
T Consensus        88 -----~~~~~~~--------~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~t------s~~~p~~l~~~  148 (235)
T PRK08084         88 -----VPEVLEG--------MEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLIT------GDRPPRQLNLG  148 (235)
T ss_pred             -----hHHHHHH--------hhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEe------CCCChHHcCcc
Confidence                 0011111        1234799999993  4455555667777777655 64 78888      554321     


Q ss_pred             HHHHhcCC-CcEEEEeCCCChhHHHHHHHHHHH
Q 029421          156 VARLRNHP-GATIFTLSPGNRDSLKDNIYYQLT  187 (193)
Q Consensus       156 ~~~~~d~~-~~~~~~~~~~~~~~l~~~~~~~~~  187 (193)
                      ...+..|. .+.++.+.+++.+++.+.+.++..
T Consensus       149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~  181 (235)
T PRK08084        149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRAR  181 (235)
T ss_pred             cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence            24555663 456777777777766666654343

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.33  E-value=4.2e-07  Score=87.75  Aligned_cols=41  Identities=17%  Similarity=0.178  Sum_probs=36.1

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      .+.+| +++|+|+|||||||+|++|++++.|+.|.+.+++..
T Consensus        24 ~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~   64 (1486)
T PRK04863         24 DLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT   64 (1486)
T ss_pred             EecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence            45554 999999999999999999999999999999888754

>cd04155 Arl3 Arl3 subfamily

Probab=98.32  E-value=6.1e-07  Score=67.04  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -.++|+|+||||||||++.+.|.
T Consensus        15 ~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          15 PRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             cEEEEEccCCCCHHHHHHHHhcC
Confidence            35999999999999999999986

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK04296 thymidine kinase; Provisional

Probab=98.32  E-value=8.2e-06  Score=62.63  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=26.5

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEE
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLAS  143 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~  143 (193)
                      .+++++++||..-++.   .++.++++.++. |++|+++
T Consensus        77 ~~~dvviIDEaq~l~~---~~v~~l~~~l~~~g~~vi~t  112 (190)
T PRK04296         77 EKIDCVLIDEAQFLDK---EQVVQLAEVLDDLGIPVICY  112 (190)
T ss_pred             CCCCEEEEEccccCCH---HHHHHHHHHHHHcCCeEEEE
Confidence            4689999999844442   346677787665 9999999

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.31  E-value=4.8e-07  Score=76.72  Aligned_cols=38  Identities=26%  Similarity=0.503  Sum_probs=33.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYT   44 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~   44 (193)
                      -++||.|++|||||||++.|.+++++.   .|.|.+||+..
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL  253 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL  253 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence            589999999999999999999999876   67788888875

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.31  E-value=5.8e-07  Score=79.16  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=32.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      -+++|.||||||||||++.|++.+ |..|.|.+||+.
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~  101 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN  101 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence            489999999999999999999997 567889999875

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.30  E-value=5.5e-07  Score=76.88  Aligned_cols=28  Identities=32%  Similarity=0.563  Sum_probs=25.5

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|++++++||||+||||+++.|++..
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999999864

>PLN03210 Resistant to P

Probab=98.29  E-value=2.5e-06  Score=81.64  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEec
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQG   41 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~g   41 (193)
                      ..+++++++|+|++|+|||||++.+++.+. ..+|.+++++
T Consensus       203 ~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~  243 (1153)
T PLN03210        203 ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR  243 (1153)
T ss_pred             ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence            346788999999999999999999966654 4467777765

syringae 6; Provisional

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2i3b_A	189	Solution Structure Of A Human Cancer-Related Nucleo		4e-33
1ye8_A	178	Crystal Structure Of Thep1 From The Hyperthermophil		3e-21

>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside Triphosphatase Length = 189

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 108/179 (60%), Gaps = 9/179 (5%)
Query: 10  LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
            +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R PL+
Sbjct: 5   FLTGPPGVGKTTLIHKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQ-----VGADTDLFVIDEVGKMELFSS 124
            +    P   R   VG+Y VD+ SFE +ALP L+      G    + VIDE+GKMELFS 
Sbjct: 63  RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
            F  AV + L +    +L +IP PK G+ +  V  +RN     +F ++  NR+ L  +I
Sbjct: 123 LFIQAVRQTLSTPGTIILGTIPVPK-GKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180

>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile Aquifex Aeolicus Length = 178

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 24/184 (13%)
Query: 9   FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRA 66
            ++TG PGVGKTTL+ +++E L       +  GF+T E+R  +  +R GF ++T + ++ 
Sbjct: 3   IIITGEPGVGKTTLVKKIVERL-----GKRAIGFWTEEVRDPETKKRTGFRIITTEGKKK 57
Query: 67  PLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVG---ADTD---LFVIDEVGKME 120
             +S   +S +      VG Y V+V  FE +A+P L+     A  D   + +IDE+GK E
Sbjct: 58  IFSSKFFTSKK-----LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKXE 112
Query: 121 LFSSSFFPAVLRILES-NIPVLASIPAPKSGRDI-PAVARLRNHPGATIFTLSPGNRDSL 178
           LFS  F   V +I    N+ V+A+IP     RD+ P V  +R  PGA +  L+P NRD +
Sbjct: 113 LFSKKFRDLVRQIXHDPNVNVVATIPI----RDVHPLVKEIRRLPGAVLIELTPENRDVI 168
Query: 179 KDNI 182
            ++I
Sbjct: 169 LEDI 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	7e-58
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	7e-51
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	5e-06
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	6e-05
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	6e-05
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	2e-04
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	3e-04
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	4e-04
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	5e-04
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	6e-04
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	6e-04
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	7e-04
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	7e-04

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Length = 189

 Score =  179 bits (455), Expect = 7e-58
 Identities = 80/189 (42%), Positives = 111/189 (58%), Gaps = 9/189 (4%)

Query: 7   KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
           +   +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R 
Sbjct: 2   RHVFLTGPPGVGKTTLIHKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGTRG 59

Query: 67  PLASINASSPESYRWPTVGRYKVDVASFEAIALPELQV-----GADTDLFVIDEVGKMEL 121
           PL+ +    P   R   VG+Y VD+ SFE +ALP L+      G    + VIDE+GKMEL
Sbjct: 60  PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMEL 119

Query: 122 FSSSFFPAVLRILESN-IPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKD 180
           FS  F  AV + L +    +L +IP PK G+ +  V  +RN     +F ++  NR+ L  
Sbjct: 120 FSQLFIQAVRQTLSTPGTIILGTIPVPK-GKPLALVEEIRNRKDVKVFNVTKENRNHLLP 178

Query: 181 NIYYQLTDA 189
           +I   +  +
Sbjct: 179 DIVTCVQSS 187

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178

 Score =  160 bits (407), Expect = 7e-51
 Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 22/187 (11%)

Query: 9   FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRA 66
            ++TG PGVGKTTL+ +++E L       +  GF+T E+R  +  +R GF ++T + ++ 
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGK-----RAIGFWTEEVRDPETKKRTGFRIITTEGKKK 57

Query: 67  PLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ------VGADTDLFVIDEVGKME 120
             +S   +S        VG Y V+V  FE +A+P L+            + +IDE+GKME
Sbjct: 58  IFSSKFFTSK-----KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME 112

Query: 121 LFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLK 179
           LFS  F   V +I+   N+ V+A+IP        P V  +R  PGA +  L+P NRD + 
Sbjct: 113 LFSKKFRDLVRQIMHDPNVNVVATIPIRDVH---PLVKEIRRLPGAVLIELTPENRDVIL 169

Query: 180 DNIYYQL 186
           ++I   L
Sbjct: 170 EDILSLL 176

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Length = 235

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query: 5   AGKCFLVTGPPGVGKTTLIMRVL-ESLKASNPSLKVQGFYTGE-----IRQGGQRVGFEV 58
            G    +TG PG GKT   +  + + L+  +P +    + T E     I +  ++  ++ 
Sbjct: 22  QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI----YVTTEESRDSIIRQAKQFNWDF 77

Query: 59  VTLDDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGK 118
               +++  L  I+A   E     ++     +      +   + ++G      VID V  
Sbjct: 78  EEYIEKK--LIIIDALMKEKEDQWSLVNLTPE-ELVNKVIEAKQKLGYGKARLVIDSVSA 134

Query: 119 MELFSSSFFPAVLRIL-----ESNIPVL 141
           + L   +    +   L     + N  + 
Sbjct: 135 LFLDKPAMARKISYYLKRVLNKWNFTIY 162

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Length = 318

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 4  GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI 47
             K F +T      K  L+  V++ L  S+   ++  F    I
Sbjct: 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHI 86

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Length = 459

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 3  AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS 36
                  + GP G G TTL   ++E+L ++  +
Sbjct: 42 KEKKHHVTINGPAGTGATTLTKFIIEALISTGET 75

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Length = 169

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 23/157 (14%)

Query: 7   KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--- 63
             + V G    GKTTL+ + +        +   +G+  G ++  G           D   
Sbjct: 5   NVWQVVGYKHSGKTTLMEKWV-------AAAVREGWRVGTVKHHGHGGEPARPEGVDSVR 57

Query: 64  -RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVG----- 117
             RA   +         +             +    +  L      DL +++        
Sbjct: 58  HERAGAVATAVEGDGLLQLHL------RRPLWRLDDVLALYAPLRLDLVLVEGYKQERHP 111

Query: 118 KMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIP 154
           K+ L  S    A L+ L  NI  + +    +     P
Sbjct: 112 KVVLVRSEEDWASLQHLA-NIRAVIAWEPLEGPLAHP 147

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 7  KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39
          K  +VTG PGVGK+T++ +V E L     + K+
Sbjct: 2  KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKI 34

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Length = 247

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 19/146 (13%)

Query: 10  LVTGPPGVGKTTLIMRVL-ESLKASNPSLKVQGFYTGE-----IRQGGQRVGFEVVTLDD 63
           L++G PG GKT    + L   LK   P +    +   E     +RQ   + G++V   ++
Sbjct: 27  LLSGGPGTGKTIFSQQFLWNGLKMGEPGI----YVALEEHPVQVRQNMAQFGWDVKPYEE 82

Query: 64  RRAPLASINASSPESYRWPTVGRYKV-DVASFEAI--ALPELQVGADTDLFVIDEVGKME 120
           +    A ++A +    +     +Y V D+         L +     +    V+D V  + 
Sbjct: 83  KGM-FAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141

Query: 121 LFSSS----FFPAVLRIL-ESNIPVL 141
           +   +        + R+L  +    +
Sbjct: 142 INKPAMARSIILQLKRVLAGTGCTSI 167

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 6  GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39
           K  +VTG PGVG TT     +++L+    + K+
Sbjct: 3  NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM 36

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 9/35 (25%)

Query: 7   KCFLVTGPPGVGKTTLIM--------RVLESLKAS 33
           +  ++ GPPG+GKTT            +LE   AS
Sbjct: 78  RAAMLYGPPGIGKTTAAHLVAQELGYDILE-QNAS 111

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 32/230 (13%), Positives = 62/230 (26%), Gaps = 69/230 (30%)

Query: 10  LVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGEIRQGGQRVGFEVV----TLDDR 64
           L+ G  G GKT + + V  S K       K+  F+   +          V+     L  +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FW---LNLKNCNSPETVLEMLQKLLYQ 208

Query: 65  RAPLASINASSPESYRWPTVG------------RYK----V--DVASFEAIALPELQVGA 106
             P  +  +    + +                  Y+    V  +V + +A       +  
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLSC 266

Query: 107 DT-----DLFVIDEVG-------KMELFSSSFFPA-----VLRILESNIPVLASIPAPKS 149
                     V D +         ++  S +  P      +L+ L+     L     P+ 
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PRE 321

Query: 150 GRDI-PAV-----ARLRNHPGATIFTLSPGNR-DSLKDNIYYQLTDAVSK 192
                P         +R+               D+ K     +LT  +  
Sbjct: 322 VLTTNPRRLSIIAESIRDGL----------ATWDNWKHVNCDKLTTIIES 361

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 4  GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS 36
                 + G  G GKT ++  VL  L      
Sbjct: 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG 75

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 9   FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPL 68
            L+ GP G GK T  M +LES+    P +        +      R     V         
Sbjct: 39  LLLYGPNGTGKKTRCMALLESI--FGPGVYRLKIDVRQFVTASNRKLELNVVSSPY---H 93

Query: 69  ASINASSPESYRWPTVGRYKV-DVASFEAIALPELQVGADTD--LFVIDEVGKMELFSSS 125
             I  S   +     + +  + +VA  E +   + + G        +I+E   +   +  
Sbjct: 94  LEITPSDMGNNDRIVI-QELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---TKD 149

Query: 126 FFPAVLRILE 135
              A+ R +E
Sbjct: 150 AQAALRRTME 159

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 4  GAGKCFLVTGPPGVGKTTLIMRVLESLK 31
                 + G PG GKT  + ++ E  K
Sbjct: 42 HHYPRATLLGRPGTGKTVTLRKLWELYK 69

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 4  GAGKCFLVTGPPGVGKTTLIMRVLESLK 31
                L  G  G GKT +   +   ++
Sbjct: 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.97
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.97
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.97
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.97
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.97
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.96
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.96
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.96
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.96
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.95
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.95
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.95
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.95
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.94
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.94
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.94
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.94
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.94
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.93
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.92
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.92
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.91
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.9
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.9
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.9
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.88
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.88
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.86
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.84
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.84
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.82
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.8
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.8
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.78
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.78
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.78
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.77
2og2_A	359	Putative signal recognition particle receptor; nuc	99.75
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.75
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.73
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.73
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.72
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.72
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.7
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.69
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.69
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.69
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.68
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.67
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.66
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.65
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.63
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.62
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.62
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.62
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.61
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.6
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.6
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.6
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.6
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.59
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.58
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.58
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.58
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.57
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.57
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.57
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.53
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.53
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.52
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.52
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.51
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.5
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.48
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.48
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.45
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.43
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.37
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.37
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.35
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.33
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.32
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.32
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.31
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.31
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.3
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.29
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.29
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.29
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.24
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.24
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.23
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.22
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.22
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.13
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.13
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.12
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.12
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.11
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.1
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.08
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.07
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.04
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.01
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.01
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.99
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.97
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.96
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.94
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.94
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.93
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.91
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.89
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.87
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.86
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.83
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.83
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.82
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.78
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.75
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.75
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.74
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.73
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.73
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.72
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.69
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.69
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.69
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.68
3bos_A	242	Putative DNA replication factor; P-loop containing	98.66
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.65
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.65
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.62
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.61
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.59
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.57
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.55
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.55
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.53
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.53
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.53
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.52
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.52
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.52
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.51
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.5
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.47
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.47
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.46
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.46
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.43
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.43
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.43
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.41
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.4
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.4
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.37
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.36
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.35
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.35
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.34
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.31
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.29
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.28
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.23
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.23
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.22
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.22
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.19
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.19
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.19
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.19
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.18
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.17
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.16
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.16
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.14
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.14
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.14
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.09
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.07
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.06
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.04
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.03
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.02
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.02
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.0
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.0
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.0
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.99
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.99
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.99
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.98
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.98
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.97
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.96
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.95
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.95
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.94
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.93
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.92
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.89
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.87
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.85
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.84
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.83
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.81
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.81
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.81
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.8
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.8
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.79
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.79
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.78
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.78
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.77
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.76
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.76
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.75
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.75
3ice_A	422	Transcription termination factor RHO; transcriptio	97.75
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.75
1via_A	175	Shikimate kinase; structural genomics, transferase	97.75
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.74
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.74
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.73
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.72
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.71
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.71
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.71
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.71
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.71
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.71
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.68
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.67
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.67
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.66
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.65
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.64
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.64
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.63
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.62
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.61
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.61
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.6
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.6
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.6
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.59
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.58
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.58
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.56
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.55
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.55
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.54
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.53
3co5_A	143	Putative two-component system transcriptional RES	97.52
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.51
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.51
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.5
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.5
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.49
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.49
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.49
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.49
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.49
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.48
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.48
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.47
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.47
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.47
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.46
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.46
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.46
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.45
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.45
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.43
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.43
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.42
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.42
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.41
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.41
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.38
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.37
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.37
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.36
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.36
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.36
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.36
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.35
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.35
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.34
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.34
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.33
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.33
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.33
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.33
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.32
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.32
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.32
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.31
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.31
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.31
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	97.31
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.31
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.31
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.3
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.29
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.29
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.29
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.29
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.28
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.27
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.27
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.27
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.26
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.26
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.25
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	97.25
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.25
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.25
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.25
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.25
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.25
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.24
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.24
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.23
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.23
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.23
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.23
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.23
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.22
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.21
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.21
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.21
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.21
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.21
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.2
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.2
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.2
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.2
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.19
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.19
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.19
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.19
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.18
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.18
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.17
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.17
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.17
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.16
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.15
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.15
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.15
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.14
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.14
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.14
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.14
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.13
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.13
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.13
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.13
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.13
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.13
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.13
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.12
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.12
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.12
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.11
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.11
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.11
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.11
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.1
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.08
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.08
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.08
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.08
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.08
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.07
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.07
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.06
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.06
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.06
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.05
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.05
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.05
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.05
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.04
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.04
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.03
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.03
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.03
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.03
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.03
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.03
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.02
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.01
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.01
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.01
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.01
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.01
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.0
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.99
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.99
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.99
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.98
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.97
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.97
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.96
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.94
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.94
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.93
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.93
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.93
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.93
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.91
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.91
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.91
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.9
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.89
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.89
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.88
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.88
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.88
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.87
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.86
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.84
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.83
2qgz_A	308	Helicase loader, putative primosome component; str	96.83
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.83
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.82
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.81
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.81
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.8
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.8
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.8
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.79
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.79
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.78
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.77
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.76
3pvs_A	447	Replication-associated recombination protein A; ma	96.75
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.73
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.72
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.72
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.71
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.71
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.7
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.7
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.69

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.2e-35  Score=246.41  Aligned_cols=156  Identities=15%  Similarity=0.176  Sum_probs=124.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch----hhccCCceeeEEEeec--CCcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG----EIRQGGQRVGFEVVTL--DDRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~----~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~   74 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.    .....++++||+||++  ++.+++.+|+.+.
T Consensus        25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~  104 (359)
T 3fvq_A           25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG  104 (359)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence            578999999999999999999999999999999999999999872    2233456799999987  4556788887665


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      .... ............++++.+++.++.                    |+.+|++|||||| ++||+..+..+...+..
T Consensus       105 l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~  183 (359)
T 3fvq_A          105 LGNG-KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA  183 (359)
T ss_dssp             STTS-SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHc-CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            4321 112222233456777888876542                    8999999999999 79999999888875555


Q ss_pred             -HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 -LES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 -l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       .++ |+|+|+|      |||++++..+||++
T Consensus       184 ~~~~~g~tvi~v------THd~~ea~~~aDri  209 (359)
T 3fvq_A          184 ALRANGKSAVFV------SHDREEALQYADRI  209 (359)
T ss_dssp             HHHHTTCEEEEE------CCCHHHHHHHCSEE
T ss_pred             HHHhCCCEEEEE------eCCHHHHHHHCCEE
Confidence             455 9999999      99999999999994

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=1.2e-35  Score=246.72  Aligned_cols=156  Identities=15%  Similarity=0.225  Sum_probs=124.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++...     ...++++||+||++  .+..++.+|+.+
T Consensus        49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~  128 (366)
T 3tui_C           49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL  128 (366)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHH
Confidence            57899999999999999999999999999999999999999987422     12346799999987  344567777654


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............++++.+++.+..                    |+.+|++|||||| ++||+..+..+.++++
T Consensus       129 ~~~~-~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~  207 (366)
T 3tui_C          129 PLEL-DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK  207 (366)
T ss_dssp             HHHH-SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHh-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence            3211 1112222233456777888876542                    8999999999999 6999999999999999


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++ + |+|||++      |||++.+.++||++
T Consensus       208 ~l~~~~g~Tii~v------THdl~~~~~~aDrv  234 (366)
T 3tui_C          208 DINRRLGLTILLI------THEMDVVKRICDCV  234 (366)
T ss_dssp             HHHHHSCCEEEEE------ESCHHHHHHHCSEE
T ss_pred             HHHHhCCCEEEEE------ecCHHHHHHhCCEE
Confidence            885 4 9999999      99999999999994

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.2e-35  Score=248.09  Aligned_cols=156  Identities=13%  Similarity=0.123  Sum_probs=126.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+.+||+||++  ++.+++.+|+.+.... 
T Consensus        24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~-  102 (381)
T 3rlf_A           24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL-  102 (381)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHH-
T ss_pred             EEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHH-
Confidence            5789999999999999999999999999999999999999999865544457899999987  4556777776553211 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............++++.+++..+.                    |+.+|++|||||| ++||+..+..+.++++.+. +
T Consensus       103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~  182 (381)
T 3rlf_A          103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR  182 (381)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh
Confidence            1112222223455677777776442                    8899999999999 7999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||++++..+||++
T Consensus       183 ~g~tii~v------THd~~ea~~~aDri  204 (381)
T 3rlf_A          183 LGRTMIYV------THDQVEAMTLADKI  204 (381)
T ss_dssp             HCCEEEEE------CSCHHHHHHHCSEE
T ss_pred             CCCEEEEE------ECCHHHHHHhCCEE
Confidence             9999999      99999999999994

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=9.8e-36  Score=238.28  Aligned_cols=157  Identities=13%  Similarity=0.246  Sum_probs=119.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--h--hccCCceeeEEEeec--CCcccccccccCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--E--IRQGGQRVGFEVVTL--DDRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~--~~~~~~~ig~~~q~~--~~~~~~~~~~~~~   74 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.  .  ....++++||+||++  .+..++.+++.+.
T Consensus        45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~  124 (263)
T 2olj_A           45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA  124 (263)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred             EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence            578999999999999999999999999999999999999998863  1  112245799999986  3334666665442


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      .................++++.+++....                    ++.+|++|||||| ++||+.++..+.++++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~  204 (263)
T 2olj_A          125 PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ  204 (263)
T ss_dssp             HHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            10011111111122345667777765432                    8899999999999 69999999999999998


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++ |+|||++      |||++.+.++||++
T Consensus       205 l~~~g~tvi~v------tHd~~~~~~~~d~v  229 (263)
T 2olj_A          205 LANEGMTMVVV------THEMGFAREVGDRV  229 (263)
T ss_dssp             HHHTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred             HHhCCCEEEEE------cCCHHHHHHhCCEE
Confidence            865 9999999      99999999999984

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=5.3e-35  Score=242.91  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=124.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++  ++.+++.+|+.+.... 
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~-  102 (359)
T 2yyz_A           24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRA-  102 (359)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSS-
T ss_pred             EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh-
Confidence            5789999999999999999999999999999999999999998754444456799999986  4556777876654321 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............++++.+++.++.                    ++.+|++|||||| ++||+..+..+.++++.+. +
T Consensus       103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  182 (359)
T 2yyz_A          103 RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE  182 (359)
T ss_dssp             SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence            1111111223455677777776432                    8999999999999 7999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||.+++..+||++
T Consensus       183 ~g~tvi~v------THd~~~~~~~adri  204 (359)
T 2yyz_A          183 LGITSVYV------THDQAEAMTMASRI  204 (359)
T ss_dssp             HCCEEEEE------ESCHHHHHHHCSEE
T ss_pred             cCCEEEEE------cCCHHHHHHhCCEE
Confidence             9999999      99999999999994

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1e-34  Score=242.30  Aligned_cols=156  Identities=13%  Similarity=0.156  Sum_probs=122.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++......++++||+||++  ++.+++.+|+.+.... 
T Consensus        32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~-  110 (372)
T 1v43_A           32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI-  110 (372)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh-
Confidence            5789999999999999999999999999999999999999998754444457799999986  4556788887664321 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............++++.+++.++.                    |+.+|++|||||| ++||+..+..+.++++.+. +
T Consensus       111 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  190 (372)
T 1v43_A          111 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK  190 (372)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence            1111111123455677777775432                    8899999999999 7999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||.+++..+||++
T Consensus       191 ~g~tvi~v------THd~~~a~~~adri  212 (372)
T 1v43_A          191 LKVTTIYV------THDQVEAMTMGDRI  212 (372)
T ss_dssp             HTCEEEEE------ESCHHHHHHHCSEE
T ss_pred             CCCEEEEE------eCCHHHHHHhCCEE
Confidence             9999999      99999999999994

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.3e-35  Score=237.61  Aligned_cols=157  Identities=14%  Similarity=0.171  Sum_probs=120.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh----------h-----ccCCceeeEEEeec--CC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE----------I-----RQGGQRVGFEVVTL--DD   63 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~----------~-----~~~~~~ig~~~q~~--~~   63 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..          .     ...++++||+||++  .+
T Consensus        27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~  106 (262)
T 1b0u_A           27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS  106 (262)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCC
Confidence            5789999999999999999999999999999999999999988641          0     12245799999986  33


Q ss_pred             cccccccccCCCCCCCCCCcccceeeehhhhhhhccccc-c--------------------cCCCCCEEEEecC-CCccc
Q 029421           64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPEL-Q--------------------VGADTDLFVIDEV-GKMEL  121 (193)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~--------------------l~~~p~llllDEp-~~LD~  121 (193)
                      ..++.+++.+..................++++.+++.+. .                    ++.+|++|||||| ++||+
T Consensus       107 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~  186 (262)
T 1b0u_A          107 HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP  186 (262)
T ss_dssp             TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCH
T ss_pred             CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence            446666654421001111111112234566777776544 2                    8899999999999 69999


Q ss_pred             cccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          122 FSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       122 ~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++..+.++++.+++ |+|||++      |||++++..+||++
T Consensus       187 ~~~~~~~~~l~~l~~~g~tvi~v------tHd~~~~~~~~d~v  223 (262)
T 1b0u_A          187 ELVGEVLRIMQQLAEEGKTMVVV------THEMGFARHVSSHV  223 (262)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEE------CSCHHHHHHHCSEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence            999999999998865 9999999      99999999999983

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=6.5e-35  Score=242.19  Aligned_cols=156  Identities=14%  Similarity=0.194  Sum_probs=124.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-----hccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-----IRQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-----~~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..     ....++++||+||++  ++.+++.+|+.+
T Consensus        26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~  105 (353)
T 1oxx_K           26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF  105 (353)
T ss_dssp             EEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence            5789999999999999999999999999999999999999988743     333457899999986  445677777665


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............++++.+++.++.                    |+.+|++|||||| ++||+..+..+.++++
T Consensus       106 ~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~  184 (353)
T 1oxx_K          106 PLTN-MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK  184 (353)
T ss_dssp             GGTT-SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHH
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence            4321 1111111223455677777776432                    8899999999999 7999999999999998


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |+|+|++      |||.+++..+||++
T Consensus       185 ~l~~~~g~tvi~v------THd~~~~~~~adri  211 (353)
T 1oxx_K          185 EVQSRLGVTLLVV------SHDPADIFAIADRV  211 (353)
T ss_dssp             HHHHHHCCEEEEE------ESCHHHHHHHCSEE
T ss_pred             HHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            875 4 9999999      99999999999994

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=3.8e-35  Score=243.35  Aligned_cols=156  Identities=12%  Similarity=0.155  Sum_probs=124.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++  ++.+++.+|+.+.... 
T Consensus        36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~-  114 (355)
T 1z47_A           36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLRE-  114 (355)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHH-
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHH-
Confidence            5789999999999999999999999999999999999999998754444457899999986  4456777776553211 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............++++.+++.++.                    |+.+|++|||||| ++||+..+..+.++++.+. +
T Consensus       115 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  194 (355)
T 1z47_A          115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE  194 (355)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            1111111223455677777776442                    8899999999999 7999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||.+++..+||++
T Consensus       195 ~g~tvi~v------THd~~~a~~~adri  216 (355)
T 1z47_A          195 MGVTSVFV------THDQEEALEVADRV  216 (355)
T ss_dssp             HTCEEEEE------CSCHHHHHHHCSEE
T ss_pred             cCCEEEEE------CCCHHHHHHhCCEE
Confidence             9999999      99999999999994

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=1e-35  Score=239.53  Aligned_cols=156  Identities=17%  Similarity=0.205  Sum_probs=120.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--h--hccCCceeeEEEeecC---CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--E--IRQGGQRVGFEVVTLD---DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~--~~~~~~~ig~~~q~~~---~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.  .  ....++.+||+||++.   ...++.+++.+
T Consensus        29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~  108 (275)
T 3gfo_A           29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF  108 (275)
T ss_dssp             EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHH
Confidence            578999999999999999999999999999999999999999872  1  1233567999999762   22355555443


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      .... .............++++.+++..+.                    ++.+|++|||||| ++||+.++..+.++++
T Consensus       109 ~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~  187 (275)
T 3gfo_A          109 GAVN-MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV  187 (275)
T ss_dssp             HHHT-SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            2111 1111111223455667777775432                    8899999999999 6999999999999999


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .++ + |+|||++      |||++++.++||++
T Consensus       188 ~l~~~~g~tvi~v------tHdl~~~~~~~drv  214 (275)
T 3gfo_A          188 EMQKELGITIIIA------THDIDIVPLYCDNV  214 (275)
T ss_dssp             HHHHHHCCEEEEE------ESCCSSGGGGCSEE
T ss_pred             HHHhhCCCEEEEE------ecCHHHHHHhCCEE
Confidence            886 5 9999999      99999999999994

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=2.9e-35  Score=234.97  Aligned_cols=157  Identities=17%  Similarity=0.095  Sum_probs=120.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...   ...++.+||+||++  .+..++.+++.+..
T Consensus        28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~  107 (257)
T 1g6h_A           28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE  107 (257)
T ss_dssp             CEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence            68999999999999999999999999999999999999999987432   11235699999986  33456666655432


Q ss_pred             CC-CCC-----------CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421           76 PE-SYR-----------WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELF  122 (193)
Q Consensus        76 ~~-~~~-----------~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~  122 (193)
                      .. ...           ...........+.++.+++....                    ++.+|++|||||| ++||+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~  187 (257)
T 1g6h_A          108 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG  187 (257)
T ss_dssp             TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHH
T ss_pred             hhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence            11 001           01111122345667777765432                    7899999999999 699999


Q ss_pred             ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++..+.++++.+++ |+|||++      |||++++.++||++
T Consensus       188 ~~~~l~~~l~~l~~~g~tvi~v------tHd~~~~~~~~d~v  223 (257)
T 1g6h_A          188 LAHDIFNHVLELKAKGITFLII------EHRLDIVLNYIDHL  223 (257)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEE------CSCCSTTGGGCSEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence            99999999998865 9999999      99999999999983

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.7e-35  Score=242.17  Aligned_cols=156  Identities=15%  Similarity=0.181  Sum_probs=124.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++  ++.+++.+|+.+.... 
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~-  102 (362)
T 2it1_A           24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLEL-  102 (362)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHH-
T ss_pred             EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHh-
Confidence            5789999999999999999999999999999999999999998754443456799999986  4456777776553210 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .............++++.+++.++.                    ++.+|++|||||| ++||+..+..+.++++.+. +
T Consensus       103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  182 (362)
T 2it1_A          103 RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE  182 (362)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence            1111111223455677777776442                    8899999999999 7999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||.+++..+||++
T Consensus       183 ~g~tvi~v------THd~~~a~~~adri  204 (362)
T 2it1_A          183 LGITTVYV------THDQAEALAMADRI  204 (362)
T ss_dssp             HTCEEEEE------ESCHHHHHHHCSEE
T ss_pred             CCCEEEEE------CCCHHHHHHhCCEE
Confidence             9999999      99999999999994

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=6e-35  Score=230.29  Aligned_cols=156  Identities=15%  Similarity=0.208  Sum_probs=116.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----c-CCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----Q-GGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~-~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++....     . .++.+||+||++  .+..++.+++.
T Consensus        26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~  105 (235)
T 3tif_A           26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE  105 (235)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHH
Confidence            578999999999999999999999999999999999999999874321     1 134699999987  33456666654


Q ss_pred             CCCCCC--CCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           73 ASSPES--YRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        73 ~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      +.....  .............+.++.+++.+.         +            ++.+|++|||||| ++||+.++..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~  185 (235)
T 3tif_A          106 LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM  185 (235)
T ss_dssp             HHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             HHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            421100  011111112234456666665431         1            8899999999999 699999999999


Q ss_pred             HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.++ + |+|||++      |||++. .++||++
T Consensus       186 ~~l~~l~~~~g~tvi~v------tHd~~~-~~~~d~i  215 (235)
T 3tif_A          186 QLLKKLNEEDGKTVVVV------THDINV-ARFGERI  215 (235)
T ss_dssp             HHHHHHHHHHCCEEEEE------CSCHHH-HTTSSEE
T ss_pred             HHHHHHHHHcCCEEEEE------cCCHHH-HHhCCEE
Confidence            9999885 4 9999999      999985 4789983

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=1.7e-34  Score=228.37  Aligned_cols=153  Identities=16%  Similarity=0.261  Sum_probs=120.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |++++ ++++|+||||||||||+|+|+|+++|++|+|.++|.++......++++||+||++  .+..++.+++.+.... 
T Consensus        20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~-   97 (240)
T 2onk_A           20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN-   97 (240)
T ss_dssp             EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTT-
T ss_pred             EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHH-
Confidence            57899 9999999999999999999999999999999999998754334456799999986  3345666776553211 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      ....  .......+.++.+++.+..                    ++.+|+++||||| ++||+.++..+.++++.++ +
T Consensus        98 ~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~  175 (240)
T 2onk_A           98 VERV--ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE  175 (240)
T ss_dssp             SCHH--HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCc--hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            1111  1123345667777765432                    8899999999999 6999999999999999875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |+|||++      |||++++..+||++
T Consensus       176 ~g~tvi~v------tHd~~~~~~~~d~i  197 (240)
T 2onk_A          176 FDVPILHV------THDLIEAAMLADEV  197 (240)
T ss_dssp             HTCCEEEE------ESCHHHHHHHCSEE
T ss_pred             cCCEEEEE------eCCHHHHHHhCCEE
Confidence             9999999      99999999999983

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=5.3e-35  Score=229.06  Aligned_cols=155  Identities=12%  Similarity=0.134  Sum_probs=117.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-----cC-CceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-----QG-GQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-----~~-~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++....     .. ++.+||+||++  .+..++.+++.
T Consensus        25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~  104 (224)
T 2pcj_A           25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI  104 (224)
T ss_dssp             EEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH
Confidence            578999999999999999999999999999999999999998864221     11 25699999986  23346666654


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +... ..............+.++.+++.+..                    ++.+|+++||||| ++||+.++..+.+++
T Consensus       105 ~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l  183 (224)
T 2pcj_A          105 VPML-KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF  183 (224)
T ss_dssp             HHHH-HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             hHHH-HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            3211 00111111122345667777765432                    8899999999999 699999999999999


Q ss_pred             HHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+++ |.|||++      |||++.+ .+||++
T Consensus       184 ~~l~~~g~tvi~v------tHd~~~~-~~~d~v  209 (224)
T 2pcj_A          184 LKINEGGTSIVMV------THERELA-ELTHRT  209 (224)
T ss_dssp             HHHHHTTCEEEEE------CSCHHHH-TTSSEE
T ss_pred             HHHHHCCCEEEEE------cCCHHHH-HhCCEE
Confidence            98865 9999999      9998877 788873

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.4e-34  Score=228.83  Aligned_cols=155  Identities=13%  Similarity=0.094  Sum_probs=117.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++....   ..++++||+||++  .+..++.+++.+..
T Consensus        27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~  106 (240)
T 1ji0_A           27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA  106 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence            578999999999999999999999999999999999999999874321   1134599999986  33446667655431


Q ss_pred             CCCCCCCcccceeeehhhhhhhc-cccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAIA-LPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~-l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      ..  ............+.++.++ +...        +            ++.+|+++||||| ++||+.++..+.++++.
T Consensus       107 ~~--~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~  184 (240)
T 1ji0_A          107 YN--RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK  184 (240)
T ss_dssp             TT--CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             hc--CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            10  0111111122334555553 4322        1            8899999999999 69999999999999998


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++ |+|||++      |||++++.++||++
T Consensus       185 ~~~~g~tvi~v------tHd~~~~~~~~d~v  209 (240)
T 1ji0_A          185 INQEGTTILLV------EQNALGALKVAHYG  209 (240)
T ss_dssp             HHHTTCCEEEE------ESCHHHHHHHCSEE
T ss_pred             HHHCCCEEEEE------ecCHHHHHHhCCEE
Confidence            865 9999999      99999999999983

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.9e-34  Score=231.32  Aligned_cols=154  Identities=15%  Similarity=0.229  Sum_probs=120.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ..++.+||+||++   ....++.+++.+....
T Consensus        28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~  106 (266)
T 2yz2_A           28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKN  106 (266)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTT
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH-HhhhhEEEEeccchhhcCCCcHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999887432 3356799999974   2334666665543221


Q ss_pred             CCCCCcccceeeehhhhhhhccc--ccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP--ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~--~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      .  ...........++++.+++.  +..                    ++.+|+++||||| ++||+.++..+.++++.+
T Consensus       107 ~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l  184 (266)
T 2yz2_A          107 F--YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW  184 (266)
T ss_dssp             T--CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             c--CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence            1  11111122345667777776  432                    8899999999999 699999999999999988


Q ss_pred             hC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++ |.|||++      |||++.+..+||++
T Consensus       185 ~~~g~tii~v------tHd~~~~~~~~d~v  208 (266)
T 2yz2_A          185 KTLGKTVILI------SHDIETVINHVDRV  208 (266)
T ss_dssp             HHTTCEEEEE------CSCCTTTGGGCSEE
T ss_pred             HHcCCEEEEE------eCCHHHHHHhCCEE
Confidence            64 9999999      99999999999983

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.1e-34  Score=242.22  Aligned_cols=156  Identities=14%  Similarity=0.181  Sum_probs=123.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh------hccCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE------IRQGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~------~~~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++..      ....++++||+||++  ++.+++.+|+.
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~  103 (372)
T 1g29_1           24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA  103 (372)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred             EEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHH
Confidence            5789999999999999999999999999999999999999988743      333356799999986  44567777765


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +.... .............++++.+++.++.                    |+.+|++|||||| ++||+..+..+..++
T Consensus       104 ~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  182 (372)
T 1g29_1          104 FPLKL-RKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL  182 (372)
T ss_dssp             HHHHH-TTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred             HHHHH-cCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence            53211 1111111123455677777776432                    8899999999999 799999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+. + |.|+|++      |||.+++..+||++
T Consensus       183 ~~l~~~~g~tvi~v------THd~~~a~~~adri  210 (372)
T 1g29_1          183 KKLQRQLGVTTIYV------THDQVEAMTMGDRI  210 (372)
T ss_dssp             HHHHHHHTCEEEEE------ESCHHHHHHHCSEE
T ss_pred             HHHHHhcCCEEEEE------CCCHHHHHHhCCEE
Confidence            8875 4 9999999      99999999999994

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=5.6e-35  Score=233.07  Aligned_cols=156  Identities=17%  Similarity=0.181  Sum_probs=119.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.+||+||++  .+..++.+++.+... 
T Consensus        36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~-  114 (256)
T 1vpl_A           36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG-  114 (256)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHH-
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHH-
Confidence            57899999999999999999999999999999999999999987421 22245799999976  233466666543210 


Q ss_pred             CCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..............++++.+++.+..                    ++.+|+++||||| ++||+.++..+.++++.+++
T Consensus       115 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~  194 (256)
T 1vpl_A          115 FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ  194 (256)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh
Confidence            00111111112344566777765431                    8899999999999 69999999999999998865


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      |||++++..+||++
T Consensus       195 ~g~tiiiv------tHd~~~~~~~~d~v  216 (256)
T 1vpl_A          195 EGLTILVS------SHNMLEVEFLCDRI  216 (256)
T ss_dssp             TTCEEEEE------ECCHHHHTTTCSEE
T ss_pred             CCCEEEEE------cCCHHHHHHHCCEE
Confidence             9999999      99999999999983

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=1.7e-34  Score=231.45  Aligned_cols=154  Identities=14%  Similarity=0.134  Sum_probs=118.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++...  ...++.++|++|++.  ...++.+++.+...
T Consensus        32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  111 (266)
T 4g1u_C           32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRA  111 (266)
T ss_dssp             EEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGT
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhh
Confidence            57899999999999999999999999999999999999999987432  223456899999762  33455666544321


Q ss_pred             CCCCCCcccceeeehhhhhhhcccccc--------------------cCC------CCCEEEEecC-CCccccccchHHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGA------DTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~------~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      ..   ..........+.++.+++..+.                    ++.      +|++|||||| +|||+.++..+.+
T Consensus       112 ~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~  188 (266)
T 4g1u_C          112 PY---GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR  188 (266)
T ss_dssp             TS---CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHH
T ss_pred             hc---CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHH
Confidence            11   1111223344566666665432                    666      9999999999 6999999999999


Q ss_pred             HHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          130 VLRILES--NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       130 ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +++.+++  |+|||++      |||++++.++||++
T Consensus       189 ~l~~l~~~~~~tvi~v------tHdl~~~~~~~d~v  218 (266)
T 4g1u_C          189 LLRQLTRQEPLAVCCV------LHDLNLAALYADRI  218 (266)
T ss_dssp             HHHHHHHHSSEEEEEE------CSCHHHHHHHCSEE
T ss_pred             HHHHHHHcCCCEEEEE------EcCHHHHHHhCCEE
Confidence            9998864  5799999      99999999999994

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.1e-34  Score=240.23  Aligned_cols=153  Identities=12%  Similarity=0.197  Sum_probs=122.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++  ++.+++.+|+.+.... 
T Consensus        21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~-   99 (348)
T 3d31_A           21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM-   99 (348)
T ss_dssp             EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH-
T ss_pred             EEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH-
Confidence            5789999999999999999999999999999999999999998754333356799999986  4456777776543210 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .....  . ....++++.+++.++.                    ++.+|++|||||| ++||+..+..+.++++.+. +
T Consensus       100 ~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~  176 (348)
T 3d31_A          100 KKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK  176 (348)
T ss_dssp             HCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence            00111  1 3445677777775432                    8999999999999 7999999999999998875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|+|++      |||.+++..+||++
T Consensus       177 ~g~tii~v------THd~~~~~~~adri  198 (348)
T 3d31_A          177 NKLTVLHI------THDQTEARIMADRI  198 (348)
T ss_dssp             TTCEEEEE------ESCHHHHHHHCSEE
T ss_pred             cCCEEEEE------eCCHHHHHHhCCEE
Confidence             9999999      99999999999983

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=2.2e-34  Score=223.95  Aligned_cols=151  Identities=17%  Similarity=0.192  Sum_probs=117.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.   ..++.++|+||++.  +..++.+++.+.... 
T Consensus        30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~---~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~-  105 (214)
T 1sgw_A           30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT---KVKGKIFFLPEEIIVPRKISVEDYLKAVASL-  105 (214)
T ss_dssp             EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG---GGGGGEEEECSSCCCCTTSBHHHHHHHHHHH-
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh---hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHh-
Confidence            578999999999999999999999999999999999999998875   23567999999863  334566665432110 


Q ss_pred             CCCCcccceeeehhhhhhhcccc-------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPE-------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-N  137 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~-------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g  137 (193)
                      ... ... .....++++.+++..       ++            ++.+|+++||||| ++||+.++..+.++++.+++ |
T Consensus       106 ~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g  183 (214)
T 1sgw_A          106 YGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK  183 (214)
T ss_dssp             TTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH
T ss_pred             cCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCC
Confidence            000 111 122345566666542       22            8899999999999 69999999999999998875 8


Q ss_pred             CcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          138 IPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       138 ~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .|||++      |||++++..+||++
T Consensus       184 ~tiiiv------tHd~~~~~~~~d~v  203 (214)
T 1sgw_A          184 GIVIIS------SREELSYCDVNENL  203 (214)
T ss_dssp             SEEEEE------ESSCCTTSSEEEEG
T ss_pred             CEEEEE------eCCHHHHHHhCCEE
Confidence            999999      99999998888874

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.97  E-value=9e-34  Score=228.71  Aligned_cols=157  Identities=14%  Similarity=0.157  Sum_probs=118.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--h--hccCCceeeEEEeecC--C--ccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--E--IRQGGQRVGFEVVTLD--D--RRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~--~~~~~~~ig~~~q~~~--~--~~~~~~~~~   72 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.  .  ....++.+||+||++.  .  ..++.+++.
T Consensus        42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~  121 (279)
T 2ihy_A           42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI  121 (279)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHH
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHH
Confidence            578999999999999999999999999999999999999998764  2  1223457999999852  1  236667765


Q ss_pred             CCCCCC---CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           73 ASSPES---YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        73 ~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      +.....   .............+.++.+++....                    ++.+|++|||||| ++||+.++..+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~  201 (279)
T 2ihy_A          122 SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL  201 (279)
T ss_dssp             TTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred             hhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHH
Confidence            532110   0001111122344567777765432                    8899999999999 699999999999


Q ss_pred             HHHHHHhC-CCcE--EEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILES-NIPV--LASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~-g~tv--l~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+++ |+||  |++      |||++++.++||++
T Consensus       202 ~~l~~l~~~g~tv~~iiv------tHd~~~~~~~~d~v  233 (279)
T 2ihy_A          202 SILDSLSDSYPTLAMIYV------THFIEEITANFSKI  233 (279)
T ss_dssp             HHHHHHHHHCTTCEEEEE------ESCGGGCCTTCCEE
T ss_pred             HHHHHHHHCCCEEEEEEE------ecCHHHHHHhCCEE
Confidence            99998866 9999  999      99999998999983

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.97  E-value=3.1e-33  Score=222.20  Aligned_cols=150  Identities=17%  Similarity=0.195  Sum_probs=117.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC--CcccccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD--DRRAPLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~   76 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|+ |+|.++|.++...  ...++++||+||++.  ...++.+++.+...
T Consensus        21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~   99 (249)
T 2qi9_C           21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH   99 (249)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc
Confidence            578999999999999999999999999999999 9999999987422  223457999999873  33466666554321


Q ss_pred             CCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCC-------EEEEecC-CCccccccchHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTD-------LFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~-------llllDEp-~~LD~~~~~~~~  128 (193)
                      .  ..   . .....+.++.+++.++.                    ++.+|+       ++||||| ++||+.++..+.
T Consensus       100 ~--~~---~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~  173 (249)
T 2qi9_C          100 D--KT---R-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD  173 (249)
T ss_dssp             S--TT---C-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHH
T ss_pred             c--CC---c-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHH
Confidence            1  00   1 22344566666665331                    778999       9999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+++ |+|||++      |||++.+.++||++
T Consensus       174 ~~l~~l~~~g~tviiv------tHd~~~~~~~~d~v  203 (249)
T 2qi9_C          174 KILSALSQQGLAIVMS------SHDLNHTLRHAHRA  203 (249)
T ss_dssp             HHHHHHHHTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred             HHHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence            99998865 9999999      99999999999983

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.97  E-value=5.5e-32  Score=214.33  Aligned_cols=165  Identities=13%  Similarity=0.166  Sum_probs=118.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...  ...++.++|+||++.. ..++.+++.+....
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~  102 (243)
T 1mv5_A           23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG  102 (243)
T ss_dssp             EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccC
Confidence            57899999999999999999999999999999999999999987432  2345679999998721 23566665543110


Q ss_pred             CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                        ...    .....+.++.+++.                   .++            ++.+|+++||||| ++||+.++.
T Consensus       103 --~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~  176 (243)
T 1mv5_A          103 --DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES  176 (243)
T ss_dssp             --CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCC
T ss_pred             --CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence              000    01112222222221                   222            7889999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.++++.+.+|+|||++      |||++.+. .||++    ++.+  +..++.+++..
T Consensus       177 ~i~~~l~~~~~~~tvi~v------tH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~  226 (243)
T 1mv5_A          177 MVQKALDSLMKGRTTLVI------AHRLSTIV-DADKIYFIEKGQI--TGSGKHNELVA  226 (243)
T ss_dssp             HHHHHHHHHHTTSEEEEE------CCSHHHHH-HCSEEEEEETTEE--CCCSCHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEE------eCChHHHH-hCCEEEEEECCEE--EEeCCHHHHHh
Confidence            999999887779999999      99998775 59883    2322  33455555544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.97  E-value=2e-32  Score=220.10  Aligned_cols=156  Identities=12%  Similarity=0.043  Sum_probs=113.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...  ...++.+||+||++. ...++.+++.+....
T Consensus        40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~  119 (271)
T 2ixe_A           40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR  119 (271)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhccc
Confidence            57899999999999999999999999999999999999999987432  223457999999862 124666776553221


Q ss_pred             CCCCCccc---ceeeehhhhhhh--cccc--------cc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALPE--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      ........   ......+.++.+  ++..        ++            |+.+|++|||||| ++||+.++..+.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l  199 (271)
T 2ixe_A          120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL  199 (271)
T ss_dssp             CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            10000000   001122333333  3321        22            8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+. + |+|||++      |||++.+. .||++
T Consensus       200 ~~~~~~~g~tviiv------tHd~~~~~-~~d~v  226 (271)
T 2ixe_A          200 YESPEWASRTVLLI------TQQLSLAE-RAHHI  226 (271)
T ss_dssp             HHCTTTTTSEEEEE------CSCHHHHT-TCSEE
T ss_pred             HHHHhhcCCEEEEE------eCCHHHHH-hCCEE
Confidence            9885 3 8999999      99998876 48883

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.97  E-value=2.7e-32  Score=216.58  Aligned_cols=149  Identities=13%  Similarity=0.164  Sum_probs=111.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...  ...++.+||+||++. ...++.+++.+....
T Consensus        30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~  109 (247)
T 2ff7_A           30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG  109 (247)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTT
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCC
Confidence            57899999999999999999999999999999999999999987432  223467999999862 123666666543210


Q ss_pred             CCCCCcccceeeehhhhhhhcc-------------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIAL-------------------PELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l-------------------~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                         ..    .....+.++.+++                   ..++            ++.+|+++||||| ++||+.++.
T Consensus       110 ---~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~  182 (247)
T 2ff7_A          110 ---MS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH  182 (247)
T ss_dssp             ---CC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred             ---CC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence               00    0111122222221                   1222            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+++|+|||++      |||++.+. .||++
T Consensus       183 ~i~~~l~~~~~g~tviiv------tH~~~~~~-~~d~v  213 (247)
T 2ff7_A          183 VIMRNMHKICKGRTVIII------AHRLSTVK-NADRI  213 (247)
T ss_dssp             HHHHHHHHHHTTSEEEEE------CSSGGGGT-TSSEE
T ss_pred             HHHHHHHHHcCCCEEEEE------eCCHHHHH-hCCEE
Confidence            999999988669999999      99998875 48883

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.97  E-value=2.5e-32  Score=217.50  Aligned_cols=146  Identities=21%  Similarity=0.308  Sum_probs=112.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.+           ++.+||+||++.  +..++.+++.+.....
T Consensus        26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-----------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~   94 (253)
T 2nq2_C           26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-----------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTH   94 (253)
T ss_dssp             EEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-----------CSCEEEECSCCCCSSCCBHHHHHHGGGGGG
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------eccEEEEcCCCccCCCCCHHHHHHHhhhhh
Confidence            578999999999999999999999999999999999971           356999999862  3446666654432110


Q ss_pred             CC---CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH
Q 029421           79 YR---WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        79 ~~---~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l  134 (193)
                      ..   ...........++++.+++.+..                    ++.+|++|||||| ++||+.++..+.++++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l  174 (253)
T 2nq2_C           95 INTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL  174 (253)
T ss_dssp             SCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHH
T ss_pred             cccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            00   01111122344566777765432                    8899999999999 699999999999999887


Q ss_pred             h-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 E-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      + + |+|||++      |||++++.++||++
T Consensus       175 ~~~~g~tvi~v------tHd~~~~~~~~d~v  199 (253)
T 2nq2_C          175 AQSQNMTVVFT------THQPNQVVAIANKT  199 (253)
T ss_dssp             HHTSCCEEEEE------ESCHHHHHHHCSEE
T ss_pred             HHhcCCEEEEE------ecCHHHHHHhCCEE
Confidence            5 4 8999999      99999999999983

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.97  E-value=2.2e-32  Score=217.43  Aligned_cols=157  Identities=11%  Similarity=0.098  Sum_probs=112.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc---cCCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+|+|+|+  ++|++|+|.++|.++....   ..+..++|+||++.  +..++.+++.+
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  103 (250)
T 2d2e_A           24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL  103 (250)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence            57899999999999999999999999998  7999999999999874321   11235889999863  33444454432


Q ss_pred             CCCCCCCC--Ccccceeeehhhhhhhccc---------c-cc------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           74 SSPESYRW--PTVGRYKVDVASFEAIALP---------E-LQ------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        74 ~~~~~~~~--~~~~~~~~~~~~l~~~~l~---------~-~~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ........  ..........+.++.+++.         . ++            ++.+|+++||||| ++||+.++..+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~  183 (250)
T 2d2e_A          104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVA  183 (250)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHH
T ss_pred             HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH
Confidence            11000000  0001112233455555552         1 33            7889999999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP  163 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~  163 (193)
                      ++++.+++ |+|||++      |||++.+..+ ||++
T Consensus       184 ~~l~~l~~~g~tvi~v------tHd~~~~~~~~~d~v  214 (250)
T 2d2e_A          184 RGVNAMRGPNFGALVI------THYQRILNYIQPDKV  214 (250)
T ss_dssp             HHHHHHCSTTCEEEEE------CSSSGGGGTSCCSEE
T ss_pred             HHHHHHHhcCCEEEEE------ecCHHHHHHhcCCEE
Confidence            99999876 9999999      9999988887 5873

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.97  E-value=9e-32  Score=219.33  Aligned_cols=170  Identities=14%  Similarity=0.183  Sum_probs=119.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.+||+||++.. ..++.+|+.+....
T Consensus        75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~  154 (306)
T 3nh6_A           75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT  154 (306)
T ss_dssp             EEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTT
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhccc
Confidence            57899999999999999999999999999999999999999997532  2335679999998732 23566666553321


Q ss_pred             CCCCCcccce---eeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGRY---KVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~~---~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. .......   ....+.+..+  ++.        .++            ++.+|++|||||| ++||+.++..+.+.+
T Consensus       155 ~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l  233 (306)
T 3nh6_A          155 AG-NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL  233 (306)
T ss_dssp             CC-HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            10 0000000   0001111111  111        111            7889999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      +.+.+++|+|++      ||++..+.. ||++    +|.++  ..++.+++.+
T Consensus       234 ~~l~~~~Tvi~i------tH~l~~~~~-aD~i~vl~~G~iv--~~G~~~el~~  277 (306)
T 3nh6_A          234 AKVCANRTTIVV------AHRLSTVVN-ADQILVIKDGCIV--ERGRHEALLS  277 (306)
T ss_dssp             HHHHTTSEEEEE------CCSHHHHHT-CSEEEEEETTEEE--EEECHHHHHH
T ss_pred             HHHcCCCEEEEE------EcChHHHHc-CCEEEEEECCEEE--EECCHHHHHh
Confidence            888778999999      999998876 9984    33333  3345555554

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.96  E-value=6.5e-32  Score=216.66  Aligned_cols=157  Identities=10%  Similarity=0.126  Sum_probs=111.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh--cccCCCCeEEeceEchhhc--c-CCceeeEEEeecC--CcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES--LKASNPSLKVQGFYTGEIR--Q-GGQRVGFEVVTLD--DRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl--~~~~~G~i~~~g~~~~~~~--~-~~~~ig~~~q~~~--~~~~~~~~~~~   73 (193)
                      |+|++|++++|+||||||||||+|+|+|+  ++|++|+|.++|.++....  . .+..++|+||++.  +..++.+++.+
T Consensus        41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~  120 (267)
T 2zu0_C           41 LDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT  120 (267)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHH
Confidence            57899999999999999999999999999  4789999999999874321  1 1235899999862  23333333221


Q ss_pred             CCCCC---CCC---Ccccceeeehhhhhhhccc-c---------cc------------cCCCCCEEEEecC-CCcccccc
Q 029421           74 SSPES---YRW---PTVGRYKVDVASFEAIALP-E---------LQ------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        74 ~~~~~---~~~---~~~~~~~~~~~~l~~~~l~-~---------~~------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      .....   ...   ..........+.++.+++. .         ++            ++.+|++|||||| ++||+.++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~  200 (267)
T 2zu0_C          121 ALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL  200 (267)
T ss_dssp             HHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred             HHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence            10000   000   0001112234455555553 1         22            7889999999999 69999999


Q ss_pred             chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH-hcCC
Q 029421          125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL-RNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~-~d~~  163 (193)
                      ..+.++++.+++ |+|||++      |||++.+..+ ||++
T Consensus       201 ~~l~~~l~~l~~~g~tviiv------tHd~~~~~~~~~d~v  235 (267)
T 2zu0_C          201 KVVADGVNSLRDGKRSFIIV------THYQRILDYIKPDYV  235 (267)
T ss_dssp             HHHHHHHHTTCCSSCEEEEE------CSSGGGGGTSCCSEE
T ss_pred             HHHHHHHHHHHhcCCEEEEE------eeCHHHHHhhcCCEE
Confidence            999999998866 9999999      9999988776 8873

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.96  E-value=1.3e-31  Score=214.40  Aligned_cols=146  Identities=12%  Similarity=0.159  Sum_probs=113.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceee-EEEeecCCcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVG-FEVVTLDDRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig-~~~q~~~~~~~~~~~~~~~~~~~~   79 (193)
                      |+++ |++++|+||||||||||+|+|+|++ |++|+|.++|.++... ..+++++ |+||++....++.+++.+... . 
T Consensus        26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~~~~i~~~v~Q~~~l~~tv~enl~~~~~-~-  100 (263)
T 2pjz_A           26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RNYIRYSTNLPEAYEIGVTVNDIVYLYEE-L-  100 (263)
T ss_dssp             EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SCCTTEEECCGGGSCTTSBHHHHHHHHHH-H-
T ss_pred             EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HHhhheEEEeCCCCccCCcHHHHHHHhhh-h-
Confidence            5789 9999999999999999999999999 9999999999887533 2256799 999987324455555433110 0 


Q ss_pred             CCCcccceeeehhhhhhhccc-ccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhCC
Q 029421           80 RWPTVGRYKVDVASFEAIALP-ELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESN  137 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~-~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g  137 (193)
                        .. .......+.++.+++. +..                    ++.+|+++||||| ++||+.++..+.++++.+++ 
T Consensus       101 --~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-  176 (263)
T 2pjz_A          101 --KG-LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-  176 (263)
T ss_dssp             --TC-CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-
T ss_pred             --cc-hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-
Confidence              00 1112234566666665 321                    8899999999999 69999999999999988765 


Q ss_pred             CcEEEEecCCCCCCChhHHHHHhc-C
Q 029421          138 IPVLASIPAPKSGRDIPAVARLRN-H  162 (193)
Q Consensus       138 ~tvl~~~~~~~~tHd~~~~~~~~d-~  162 (193)
                       |||++      |||++++.++|| +
T Consensus       177 -tviiv------tHd~~~~~~~~d~~  195 (263)
T 2pjz_A          177 -EGILV------THELDMLNLYKEYK  195 (263)
T ss_dssp             -EEEEE------ESCGGGGGGCTTSE
T ss_pred             -cEEEE------EcCHHHHHHhcCce
Confidence             99999      999999989999 7

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.96  E-value=1.2e-30  Score=208.53  Aligned_cols=148  Identities=13%  Similarity=0.148  Sum_probs=108.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.++...  ...++.++|+||++.. ..++.+++.+....
T Consensus        41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~  119 (260)
T 2ghi_A           41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD  119 (260)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCC
Confidence            57899999999999999999999999999987 79999999987432  2234679999998721 23566665543210


Q ss_pred             CCCCCcccceeeehhhhhhhcc-------------------cccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIAL-------------------PELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l-------------------~~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                         ...    ....+.++.+++                   ..++            ++.+|+++||||| ++||+.++.
T Consensus       120 ---~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~  192 (260)
T 2ghi_A          120 ---ATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY  192 (260)
T ss_dssp             ---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHH
T ss_pred             ---CCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence               000    011111111111                   1222            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+++|+|||++      |||++.+. .||++
T Consensus       193 ~i~~~l~~l~~~~tviiv------tH~~~~~~-~~d~i  223 (260)
T 2ghi_A          193 LFQKAVEDLRKNRTLIII------AHRLSTIS-SAESI  223 (260)
T ss_dssp             HHHHHHHHHTTTSEEEEE------CSSGGGST-TCSEE
T ss_pred             HHHHHHHHhcCCCEEEEE------cCCHHHHH-hCCEE
Confidence            999999988668999999      99998875 58873

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.96  E-value=1.9e-30  Score=204.77  Aligned_cols=143  Identities=13%  Similarity=0.157  Sum_probs=101.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|           .+||+||++. ...++.+++.+....  
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~~~~~~tv~enl~~~~~~--   92 (237)
T 2cbz_A           26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-----------SVAYVPQQAWIQNDSLRENILFGCQL--   92 (237)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----------CEEEECSSCCCCSEEHHHHHHTTSCC--
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----------EEEEEcCCCcCCCcCHHHHhhCcccc--
Confidence            57899999999999999999999999999999999999988           3899999862 234556665443211  


Q ss_pred             CCCcccceeeehhhhhhhcc-------------cccc------------cCCCCCEEEEecC-CCccccccchHHHHHH-
Q 029421           80 RWPTVGRYKVDVASFEAIAL-------------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR-  132 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l-------------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~-  132 (193)
                      ..............++.+++             ..++            ++.+|+++||||| ++||+.++..+.+++. 
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~  172 (237)
T 2cbz_A           93 EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIG  172 (237)
T ss_dssp             CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence            00000000000011111111             1222            7899999999999 6999999988888774 


Q ss_pred             --HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 --ILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 --~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                        .+.+|+|||++      |||++.+. .||++
T Consensus       173 ~~~~~~~~tviiv------tH~~~~~~-~~d~v  198 (237)
T 2cbz_A          173 PKGMLKNKTRILV------THSMSYLP-QVDVI  198 (237)
T ss_dssp             TTSTTTTSEEEEE------CSCSTTGG-GSSEE
T ss_pred             HHhhcCCCEEEEE------ecChHHHH-hCCEE
Confidence              34448999999      99998764 68883

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.95  E-value=5e-30  Score=201.39  Aligned_cols=145  Identities=18%  Similarity=0.165  Sum_probs=101.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|           +++|+||++.. ..++.+++.+......
T Consensus        29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-----------~i~~v~q~~~~~~~tv~enl~~~~~~~~   97 (229)
T 2pze_A           29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------RISFCSQFSWIMPGTIKENIIFGVSYDE   97 (229)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----------CEEEECSSCCCCSBCHHHHHHTTSCCCH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----------EEEEEecCCcccCCCHHHHhhccCCcCh
Confidence            57899999999999999999999999999999999999987           48999998621 2366666554321000


Q ss_pred             CCCccc-ceeeehhhhhhhc----------ccccc------------cCCCCCEEEEecC-CCccccccchHHHH-HHHH
Q 029421           80 RWPTVG-RYKVDVASFEAIA----------LPELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAV-LRIL  134 (193)
Q Consensus        80 ~~~~~~-~~~~~~~~l~~~~----------l~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~l-l~~l  134 (193)
                      ...... ......+.++.+.          ...++            ++.+|+++||||| ++||+.++..+.++ ++.+
T Consensus        98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~  177 (229)
T 2pze_A           98 YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL  177 (229)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence            000000 0000111111111          01222            7899999999999 69999998888775 4555


Q ss_pred             hCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          135 ESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+|+|||++      |||++.+. .||++
T Consensus       178 ~~~~tvi~v------tH~~~~~~-~~d~v  199 (229)
T 2pze_A          178 MANKTRILV------TSKMEHLK-KADKI  199 (229)
T ss_dssp             TTTSEEEEE------CCCHHHHH-HCSEE
T ss_pred             hCCCEEEEE------cCChHHHH-hCCEE
Confidence            458999999      99998875 58883

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.95  E-value=6.2e-29  Score=218.62  Aligned_cols=165  Identities=15%  Similarity=0.172  Sum_probs=119.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++++||+||++.. ..+..+|+.+....
T Consensus       364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~  443 (582)
T 3b5x_A          364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG  443 (582)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC
Confidence            57899999999999999999999999999999999999999987432  2345679999998731 23666666543200


Q ss_pred             CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                        ...    .....+.++.+++.                   .++            ++.+|++++|||| ++||+.++.
T Consensus       444 --~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~  517 (582)
T 3b5x_A          444 --EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESER  517 (582)
T ss_pred             --CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence              000    01112222222221                   122            8899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.+.++.+.+|+|+|++      ||+++.+. .||++    +|.++  ..++.+++.+
T Consensus       518 ~i~~~l~~~~~~~tvi~i------tH~~~~~~-~~d~i~~l~~G~i~--~~g~~~~l~~  567 (582)
T 3b5x_A          518 AIQAALDELQKNKTVLVI------AHRLSTIE-QADEILVVDEGEII--ERGRHADLLA  567 (582)
T ss_pred             HHHHHHHHHcCCCEEEEE------ecCHHHHH-hCCEEEEEECCEEE--EECCHHHHHh
Confidence            999999888779999999      99998876 69983    34443  3345555543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.95  E-value=1.4e-29  Score=212.45  Aligned_cols=147  Identities=15%  Similarity=0.179  Sum_probs=109.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....  ..++.+||+||++.. ..++.+|+.+... 
T Consensus        42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~-  119 (390)
T 3gd7_A           42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA-  119 (390)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCC-
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccc-
Confidence            5789999999999999999999999999998 8999999999874322  234679999998732 2355566432111 


Q ss_pred             CCCCCcccceeeehhhhhhhcccc-------------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE-------------------LQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                         .    ......+.++.+++..                   ++            |+.+|++|||||| ++||+..+.
T Consensus       120 ---~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~  192 (390)
T 3gd7_A          120 ---H----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ  192 (390)
T ss_dssp             ---S----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHH
T ss_pred             ---c----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence               0    0111223333333221                   22            7899999999999 799999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.++++.+..+.|+|++      |||.+.+ .+||++
T Consensus       193 ~l~~~l~~~~~~~tvi~v------tHd~e~~-~~aDri  223 (390)
T 3gd7_A          193 IIRRTLKQAFADCTVILC------EARIEAM-LECDQF  223 (390)
T ss_dssp             HHHHHHHTTTTTSCEEEE------CSSSGGG-TTCSEE
T ss_pred             HHHHHHHHHhCCCEEEEE------EcCHHHH-HhCCEE
Confidence            999999887668999999      9997644 569984

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.95  E-value=6.2e-29  Score=218.61  Aligned_cols=165  Identities=16%  Similarity=0.178  Sum_probs=119.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...+++++|+||++.. ..+..+|+.+....
T Consensus       364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~  443 (582)
T 3b60_A          364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE  443 (582)
T ss_dssp             EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCC
Confidence            57899999999999999999999999999999999999999987432  2335679999998731 23666776553210


Q ss_pred             CCCCCcccceeeehhhhhhhccc-------------------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-------------------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                        ...    .+...+.++.+++.                   .++            ++.+|+++||||| ++||+.++.
T Consensus       444 --~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~  517 (582)
T 3b60_A          444 --EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER  517 (582)
T ss_dssp             --CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHH
T ss_pred             --CCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHH
Confidence              000    01112222222221                   122            7899999999999 699999999


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.+.++.+.+|+|+|++      ||+++.+. .||++    +|.++  ..++.+++.+
T Consensus       518 ~i~~~l~~~~~~~tvi~i------tH~~~~~~-~~d~i~~l~~G~i~--~~g~~~~l~~  567 (582)
T 3b60_A          518 AIQAALDELQKNRTSLVI------AHRLSTIE-QADEIVVVEDGIIV--ERGTHSELLA  567 (582)
T ss_dssp             HHHHHHHHHHTTSEEEEE------CSCGGGTT-TCSEEEEEETTEEE--EEECHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEE------eccHHHHH-hCCEEEEEECCEEE--EecCHHHHHH
Confidence            999999888779999999      99998775 68883    34443  2345556544

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=8.2e-29  Score=218.43  Aligned_cols=170  Identities=14%  Similarity=0.203  Sum_probs=119.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++++||+||++.. ..+..+|+.+....
T Consensus       376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~  455 (598)
T 3qf4_B          376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG  455 (598)
T ss_dssp             EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTT
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999997533  2345689999998732 23666666543211


Q ss_pred             CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. ......   .....+..+.+  |+.        .++            ++.+|+++||||| ++||+.++..+.+.+
T Consensus       456 ~~-~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l  534 (598)
T 3qf4_B          456 AT-DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM  534 (598)
T ss_dssp             CC-TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            10 000000   00000111111  111        111            7899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      +.+.+|+|+|++      ||+++.+.. ||++    +|.+  +..++.+++.+
T Consensus       535 ~~~~~~~t~i~i------tH~l~~~~~-~d~i~~l~~G~i--~~~g~~~~l~~  578 (598)
T 3qf4_B          535 WKLMEGKTSIII------AHRLNTIKN-ADLIIVLRDGEI--VEMGKHDELIQ  578 (598)
T ss_dssp             HHHHTTSEEEEE------SCCTTHHHH-CSEEEEECSSSE--EECSCHHHHHH
T ss_pred             HHHcCCCEEEEE------ecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHh
Confidence            888779999999      999998865 9983    3433  33455666554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.95  E-value=7.5e-27  Score=178.25  Aligned_cols=179  Identities=42%  Similarity=0.708  Sum_probs=120.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCccc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVG   85 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (193)
                      |++++|+||||||||||+++|+|+++ ++| |.++|+...+.+..++++||++|+.......+.+..+........+...
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~   78 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVG   78 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccc
Confidence            78999999999999999999999999 899 9999988755555678899999987433332333222111100111122


Q ss_pred             ceeeehhhhhhhcccccc-----cCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEE-EecCCCCCCCh--hHHH
Q 029421           86 RYKVDVASFEAIALPELQ-----VGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLA-SIPAPKSGRDI--PAVA  157 (193)
Q Consensus        86 ~~~~~~~~l~~~~l~~~~-----l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~-~~~~~~~tHd~--~~~~  157 (193)
                      .+......++++.+..+.     ++.+|+++|+|||+.++.....++..+.+.++...++|+ ++..   +|+.  .++.
T Consensus        79 ~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~v---sh~~~~~~vd  155 (189)
T 2i3b_A           79 QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPV---PKGKPLALVE  155 (189)
T ss_dssp             SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCC---CCSSCCTTHH
T ss_pred             eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeec---CCCCchHHHH
Confidence            223334455555544333     478999999999755544333444444444555555554 2111   4875  7889


Q ss_pred             HHhcCCCcEEEEeCCCChhHHHHHHHHHHHHH
Q 029421          158 RLRNHPGATIFTLSPGNRDSLKDNIYYQLTDA  189 (193)
Q Consensus       158 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~  189 (193)
                      +++++.++.++.++..|++.+.+++.+.+.+.
T Consensus       156 ~i~~~~~~~i~~~~~~nr~~~~~~i~~~~~~~  187 (189)
T 2i3b_A          156 EIRNRKDVKVFNVTKENRNHLLPDIVTCVQSS  187 (189)
T ss_dssp             HHHTTCCSEEEECCSSSGGGHHHHHHHHHTTS
T ss_pred             HHeecCCcEEEEeChHhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998877654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.94  E-value=8.2e-29  Score=217.67  Aligned_cols=164  Identities=15%  Similarity=0.221  Sum_probs=118.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++++||+||++.. ..+..+|+.+....
T Consensus       362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~  441 (578)
T 4a82_A          362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT  441 (578)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999997532  2335679999998732 23666776543211


Q ss_pred             CCCCCcccceeeehhhhhhh-----------ccc--------ccc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAI-----------ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~-----------~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .   .   . ....+.++..           |+.        .++            ++.+|++++|||| ++||+.++.
T Consensus       442 ~---~---~-~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~  514 (578)
T 4a82_A          442 A---T---D-EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES  514 (578)
T ss_dssp             C---C---H-HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHH
T ss_pred             C---C---H-HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence            0   0   0 0011111111           110        111            7789999999999 699999998


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+.+.++.+.+++|+|++      ||+++.+. .||++    +|.++  ..++.+++.+
T Consensus       515 ~i~~~l~~~~~~~t~i~i------tH~l~~~~-~~d~i~~l~~G~i~--~~g~~~el~~  564 (578)
T 4a82_A          515 IIQEALDVLSKDRTTLIV------AHRLSTIT-HADKIVVIENGHIV--ETGTHRELIA  564 (578)
T ss_dssp             HHHHHHHHHTTTSEEEEE------CSSGGGTT-TCSEEEEEETTEEE--EEECHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEE------ecCHHHHH-cCCEEEEEECCEEE--EECCHHHHHh
Confidence            999999888778999999      99999875 48883    34443  3345556554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=2.2e-28  Score=215.25  Aligned_cols=170  Identities=9%  Similarity=0.116  Sum_probs=119.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  ...+++++|+||++.. ..+..+|+.+....
T Consensus       364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~  443 (587)
T 3qf4_A          364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED  443 (587)
T ss_dssp             EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCC
Confidence            57899999999999999999999999999999999999999987543  2335779999998732 23566666543221


Q ss_pred             CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. ......   .....+.++.+  |+.        .++            ++.+|+++||||| ++||+.++..+.+.+
T Consensus       444 ~~-~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l  522 (587)
T 3qf4_A          444 AT-DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL  522 (587)
T ss_dssp             CC-HHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            10 000000   00001111111  111        111            7899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      +.+.+|+|+|++      ||+++.+. .||++    +|.++  ..++.+++.+
T Consensus       523 ~~~~~~~tvi~i------tH~l~~~~-~~d~i~vl~~G~i~--~~g~~~el~~  566 (587)
T 3qf4_A          523 KRYTKGCTTFII------TQKIPTAL-LADKILVLHEGKVA--GFGTHKELLE  566 (587)
T ss_dssp             HHHSTTCEEEEE------ESCHHHHT-TSSEEEEEETTEEE--EEECHHHHHH
T ss_pred             HHhCCCCEEEEE------ecChHHHH-hCCEEEEEECCEEE--EECCHHHHHh
Confidence            888779999999      99998875 79984    34443  3345666654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.94  E-value=4.9e-28  Score=210.78  Aligned_cols=143  Identities=14%  Similarity=0.207  Sum_probs=106.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--cccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~   78 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.+++          ..++|++|+...  ..++.+++.......
T Consensus       289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~----------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~  358 (538)
T 3ozx_A          289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK----------QILSYKPQRIFPNYDGTVQQYLENASKDA  358 (538)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC----------CCEEEECSSCCCCCSSBHHHHHHHHCSST
T ss_pred             ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------eeeEeechhcccccCCCHHHHHHHhhhhc
Confidence            35789999999999999999999999999999999998654          357888887532  233344332211000


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      .  .  .......++++.+++....                    |+.+|++|||||| ++||+.++..+.++++.+. +
T Consensus       359 ~--~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~  434 (538)
T 3ozx_A          359 L--S--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE  434 (538)
T ss_dssp             T--C--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             c--c--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence            0  0  0111223455555554321                    8899999999999 6999999999999999875 3


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |+|||++      |||++++..+||++
T Consensus       435 ~g~tvi~v------sHdl~~~~~~aDri  456 (538)
T 3ozx_A          435 RKAVTFII------DHDLSIHDYIADRI  456 (538)
T ss_dssp             TTCEEEEE------CSCHHHHHHHCSEE
T ss_pred             CCCEEEEE------eCCHHHHHHhCCEE
Confidence             8999999      99999999999994

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.94  E-value=9.4e-29  Score=200.29  Aligned_cols=142  Identities=18%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+|+|+|+++|++|+|.++|           +++|+||++.. ..++.+++. ... . 
T Consensus        59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~~l~~~tv~enl~-~~~-~-  124 (290)
T 2bbs_A           59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------RISFCSQNSWIMPGTIKENII-GVS-Y-  124 (290)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------CEEEECSSCCCCSSBHHHHHH-TTC-C-
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------EEEEEeCCCccCcccHHHHhh-Ccc-c-
Confidence            57899999999999999999999999999999999999987           48999997621 235566654 211 0 


Q ss_pred             CCCcccce---eeehhhhhhhc----------ccccc------------cCCCCCEEEEecC-CCccccccchHHHH-HH
Q 029421           80 RWPTVGRY---KVDVASFEAIA----------LPELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAV-LR  132 (193)
Q Consensus        80 ~~~~~~~~---~~~~~~l~~~~----------l~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~l-l~  132 (193)
                      ........   ....+.++.+.          ...++            ++.+|+++||||| ++||+.++..+.++ ++
T Consensus       125 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~  204 (290)
T 2bbs_A          125 DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC  204 (290)
T ss_dssp             CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            00000000   00011111111          01222            7899999999999 69999999888775 34


Q ss_pred             HHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+.+|+|||++      |||++.+. .||++
T Consensus       205 ~~~~~~tviiv------tHd~~~~~-~~d~i  228 (290)
T 2bbs_A          205 KLMANKTRILV------TSKMEHLK-KADKI  228 (290)
T ss_dssp             CCTTTSEEEEE------CCCHHHHH-HSSEE
T ss_pred             HhhCCCEEEEE------ecCHHHHH-cCCEE
Confidence            44458999999      99998775 59883

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.94  E-value=1.4e-27  Score=208.06  Aligned_cols=141  Identities=13%  Similarity=0.216  Sum_probs=105.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--cccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~   78 (193)
                      |+|.+||+++|+||||||||||+|+|+|+++|++|+|.+           ...+||+||++..  ..++.++....    
T Consensus       307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-----------~~~i~~v~Q~~~~~~~~tv~~~~~~~----  371 (538)
T 1yqt_A          307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-----------DLTVAYKPQYIKADYEGTVYELLSKI----  371 (538)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----------CCCEEEECSSCCCCCSSBHHHHHHHH----
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------CceEEEEecCCcCCCCCcHHHHHHhh----
Confidence            357899999999999999999999999999999999975           2368999997632  22332221100    


Q ss_pred             CCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                       ............++++.+++...        +            ++.+|++|||||| ++||+.++..+.++++.+. +
T Consensus       372 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~  450 (538)
T 1yqt_A          372 -DASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK  450 (538)
T ss_dssp             -HHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -hccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence             00000011223345555555432        1            8899999999999 6999999999999999875 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      |||++++..+||++
T Consensus       451 ~g~tvi~v------sHd~~~~~~~~drv  472 (538)
T 1yqt_A          451 NEKTALVV------EHDVLMIDYVSDRL  472 (538)
T ss_dssp             HTCEEEEE------CSCHHHHHHHCSEE
T ss_pred             CCCEEEEE------eCCHHHHHHhCCEE
Confidence             9999999      99999999999984

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.94  E-value=1.5e-27  Score=210.23  Aligned_cols=141  Identities=13%  Similarity=0.210  Sum_probs=106.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC--cccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~   78 (193)
                      |+|.+||+++|+||||||||||+|+|+|+++|++|+|.+           ..++||+||++..  ..++.++....    
T Consensus       377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-----------~~~i~~v~Q~~~~~~~~tv~e~~~~~----  441 (607)
T 3bk7_A          377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----------DLTVAYKPQYIKAEYEGTVYELLSKI----  441 (607)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----------CCCEEEECSSCCCCCSSBHHHHHHHH----
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------eeEEEEEecCccCCCCCcHHHHHHhh----
Confidence            357899999999999999999999999999999999976           2468999997632  22332221110    


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                       ............++++.+++....                    |+.+|++|||||| ++||+.++..+.++++.+. +
T Consensus       442 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~  520 (607)
T 3bk7_A          442 -DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK  520 (607)
T ss_dssp             -HHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -hccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence             000000112234566666665331                    8899999999999 6999999999999999875 3


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |.|||++      |||++++..+||++
T Consensus       521 ~g~tvi~v------sHd~~~~~~~adrv  542 (607)
T 3bk7_A          521 NEKTALVV------EHDVLMIDYVSDRL  542 (607)
T ss_dssp             TTCEEEEE------CSCHHHHHHHCSEE
T ss_pred             CCCEEEEE------eCCHHHHHHhCCEE
Confidence             9999999      99999999999984

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.93  E-value=6.7e-27  Score=203.80  Aligned_cols=146  Identities=15%  Similarity=0.153  Sum_probs=106.5

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe---------EEeceEchhh----ccCCceeeEEEeecCCcc---
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL---------KVQGFYTGEI----RQGGQRVGFEVVTLDDRR---   65 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i---------~~~g~~~~~~----~~~~~~ig~~~q~~~~~~---   65 (193)
                      +|++||+++|+||||||||||+|+|+|+++|++|++         .++|......    ......+++++|......   
T Consensus        43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~  122 (538)
T 1yqt_A           43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAV  122 (538)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGC
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence            378999999999999999999999999999999996         3556543211    112345778887542111   


Q ss_pred             --cccccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421           66 --APLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELF  122 (193)
Q Consensus        66 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~  122 (193)
                        +..++..          .........+.++.+++....                    ++.+|++|||||| ++||+.
T Consensus       123 ~~~v~e~~~----------~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~  192 (538)
T 1yqt_A          123 KGKVIELLK----------KADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR  192 (538)
T ss_dssp             CSBHHHHHH----------HHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred             hccHHHHHh----------hhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence              1111100          001112344566666664321                    7899999999999 699999


Q ss_pred             ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++..+.++++.+++ |.|||++      |||++++..+||++
T Consensus       193 ~~~~l~~~L~~l~~~g~tvi~v------sHd~~~~~~~~dri  228 (538)
T 1yqt_A          193 QRLNAARAIRRLSEEGKSVLVV------EHDLAVLDYLSDII  228 (538)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEE------eCCHHHHHHhCCEE
Confidence            99999999998866 9999999      99999999999984

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.93  E-value=9.8e-27  Score=205.04  Aligned_cols=146  Identities=16%  Similarity=0.153  Sum_probs=106.8

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe---------EEeceEchhh----ccCCceeeEEEeecCCcc---
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL---------KVQGFYTGEI----RQGGQRVGFEVVTLDDRR---   65 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i---------~~~g~~~~~~----~~~~~~ig~~~q~~~~~~---   65 (193)
                      ++++||+++|+||||||||||+|+|+|+++|++|++         .++|..+...    ......+++++|......   
T Consensus       113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~  192 (607)
T 3bk7_A          113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV  192 (607)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence            378999999999999999999999999999999996         4556544211    112345778877542110   


Q ss_pred             --cccccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccc
Q 029421           66 --APLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELF  122 (193)
Q Consensus        66 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~  122 (193)
                        ++.+++..          ........+.++.+++....                    |+.+|++|||||| ++||+.
T Consensus       193 ~~tv~e~l~~----------~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~  262 (607)
T 3bk7_A          193 KGKVRELLKK----------VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR  262 (607)
T ss_dssp             CSBHHHHHHH----------TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred             cccHHHHhhh----------hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence              11111110          01112344566666665332                    8899999999999 699999


Q ss_pred             ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++..+.++++.+.+ |.|||++      |||++.+..+||++
T Consensus       263 ~~~~l~~~L~~l~~~g~tvIiv------sHdl~~~~~~adri  298 (607)
T 3bk7_A          263 QRLKVARVIRRLANEGKAVLVV------EHDLAVLDYLSDVI  298 (607)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEE------ecChHHHHhhCCEE
Confidence            99999999998866 9999999      99999999999984

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.4e-25  Score=197.64  Aligned_cols=139  Identities=14%  Similarity=0.187  Sum_probs=101.1

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc--ccccccccCCCCCCCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR--RAPLASINASSPESYR   80 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~--~~~~~~~~~~~~~~~~   80 (193)
                      +.+||+++|+||||||||||+|+|+|+++|++|+..           ....++|++|+....  .++.++.......  .
T Consensus       375 ~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-----------~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~--~  441 (608)
T 3j16_B          375 FSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-----------PKLNVSMKPQKIAPKFPGTVRQLFFKKIRG--Q  441 (608)
T ss_dssp             CCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-----------CSCCEEEECSSCCCCCCSBHHHHHHHHCSS--T
T ss_pred             cccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-----------cCCcEEEecccccccCCccHHHHHHHHhhc--c
Confidence            345599999999999999999999999999999731           134689999875321  2222221110000  0


Q ss_pred             CCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C-C
Q 029421           81 WPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S-N  137 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~-g  137 (193)
                      .   .......++++.+++.++.                    |+.+|++|||||| +|||+.++..+.++++.+. + |
T Consensus       442 ~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g  518 (608)
T 3j16_B          442 F---LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK  518 (608)
T ss_dssp             T---TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             c---ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            0   0112233556666654332                    8899999999999 6999999999999999874 4 9


Q ss_pred             CcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          138 IPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       138 ~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .|||++      |||++++..+||++
T Consensus       519 ~tviiv------tHdl~~~~~~aDrv  538 (608)
T 3j16_B          519 KTAFIV------EHDFIMATYLADKV  538 (608)
T ss_dssp             CEEEEE------CSCHHHHHHHCSEE
T ss_pred             CEEEEE------eCCHHHHHHhCCEE
Confidence            999999      99999999999994

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.92  E-value=2.6e-25  Score=168.24  Aligned_cols=164  Identities=32%  Similarity=0.529  Sum_probs=106.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeecCCcccccccccCCCCCCCCCCccc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVG   85 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (193)
                      +++|+||||||||||+++|+|++.     |.++|+......  ..++++||++|+.......+.....  .   ......
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~--~---~~~~~~   71 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF--T---SKKLVG   71 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTC--C---CSSEET
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcC--C---cccccc
Confidence            689999999999999999999985     677887653322  3456799999976211111111000  0   000001


Q ss_pred             ceeeehhhhh--hhcccccc----cCCCCCEEEEec--C-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHH
Q 029421           86 RYKVDVASFE--AIALPELQ----VGADTDLFVIDE--V-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus        86 ~~~~~~~~l~--~~~l~~~~----l~~~p~llllDE--p-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~  156 (193)
                      ..-.....-+  ++.+...+    ++.+|++++|||  | +++|+..+..+.++++.  .+.|+|+++|.   +||.+.+
T Consensus        72 ~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~---~h~~~~~  146 (178)
T 1ye8_A           72 SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPI---RDVHPLV  146 (178)
T ss_dssp             TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCS---SCCSHHH
T ss_pred             ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEcc---CCCchHH
Confidence            1111111111  22222211    468999999999  9 69998876655555543  26779999775   7899999


Q ss_pred             HHHhcCCCcEEEEeCCCChhHHHHHHHHHH
Q 029421          157 ARLRNHPGATIFTLSPGNRDSLKDNIYYQL  186 (193)
Q Consensus       157 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~  186 (193)
                      ..+|++.++.++.+...+++++.+++.+.+
T Consensus       147 ~~i~~r~~~~i~~~~~~~r~~~~~~l~~~~  176 (178)
T 1ye8_A          147 KEIRRLPGAVLIELTPENRDVILEDILSLL  176 (178)
T ss_dssp             HHHHTCTTCEEEECCTTTTTTHHHHHHHHS
T ss_pred             HHHHhcCCcEEEEecCcCHHHHHHHHHHHH
Confidence            999999999999999889988888886554

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=2.4e-26  Score=216.92  Aligned_cols=170  Identities=10%  Similarity=0.100  Sum_probs=118.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...  ...+++++|+||++. ...+..+|+.+....
T Consensus      1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~ 1133 (1284)
T 3g5u_A         1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS 1133 (1284)
T ss_dssp             EEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCC
Confidence            57899999999999999999999999999999999999999987432  334678999999883 234556666543221


Q ss_pred             CCCCCcccce-----eeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHH
Q 029421           78 SYRWPTVGRY-----KVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA  129 (193)
Q Consensus        78 ~~~~~~~~~~-----~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~  129 (193)
                      .. .......     ....+..+.+  ++.        .++            ++.+|++|||||| ++||+.++..+.+
T Consensus      1134 ~~-~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~ 1212 (1284)
T 3g5u_A         1134 RV-VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212 (1284)
T ss_dssp             CC-CCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHH
T ss_pred             CC-CCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            00 0000000     0001111111  110        122            7789999999999 5999999999999


Q ss_pred             HHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          130 VLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       130 ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .++.+.+|+|+|++      |||++.+. .||++    +|.++  ..++.+++.+
T Consensus      1213 ~l~~~~~~~tvi~i------sH~l~~i~-~~dri~vl~~G~i~--~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1213 ALDKAREGRTCIVI------AHRLSTIQ-NADLIVVIQNGKVK--EHGTHQQLLA 1258 (1284)
T ss_dssp             HHHHHSSSSCEEEE------CSCTTGGG-SCSEEEEEETBEEE--EEECHHHHHH
T ss_pred             HHHHhCCCCEEEEE------ecCHHHHH-cCCEEEEEECCEEE--EECCHHHHHh
Confidence            99887669999999      99999875 48884    34443  3345555554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.92  E-value=6.1e-26  Score=197.61  Aligned_cols=150  Identities=13%  Similarity=0.144  Sum_probs=99.7

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe-----------EEeceEchhh----ccCCceeeEEEeecCCcccc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL-----------KVQGFYTGEI----RQGGQRVGFEVVTLDDRRAP   67 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i-----------~~~g~~~~~~----~~~~~~ig~~~q~~~~~~~~   67 (193)
                      +++|++++|+||||||||||+|+|+|+++|++|+|           .+.|.++...    ......+...+|... ....
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~  100 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVE-YASK  100 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTT-GGGT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhh-hhhh
Confidence            46899999999999999999999999999999998           4556544211    011112222222211 0000


Q ss_pred             cccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccch
Q 029421           68 LASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSF  126 (193)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~  126 (193)
                      +.....  ....  ..........++++.+++....                    ++.+|++|||||| ++||+..+..
T Consensus       101 ~~~~~v--~~~l--~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~  176 (538)
T 3ozx_A          101 FLKGTV--NEIL--TKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN  176 (538)
T ss_dssp             TCCSBH--HHHH--HHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred             hccCcH--HHHh--hcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence            000000  0000  0001112234455555554321                    7899999999999 6999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          127 FPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       127 ~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.++++.+++|+|||++      |||++++..+||++
T Consensus       177 l~~~l~~l~~g~tii~v------sHdl~~~~~~~d~i  207 (538)
T 3ozx_A          177 MAKAIRELLKNKYVIVV------DHDLIVLDYLTDLI  207 (538)
T ss_dssp             HHHHHHHHCTTSEEEEE------CSCHHHHHHHCSEE
T ss_pred             HHHHHHHHhCCCEEEEE------EeChHHHHhhCCEE
Confidence            99999988779999999      99999999999984

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.5e-26  Score=201.36  Aligned_cols=155  Identities=12%  Similarity=0.166  Sum_probs=99.3

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE-----------EeceEchhh--ccCCceee--EEEeecCCccc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK-----------VQGFYTGEI--RQGGQRVG--FEVVTLDDRRA   66 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~-----------~~g~~~~~~--~~~~~~ig--~~~q~~~~~~~   66 (193)
                      ++++|++++|+||||||||||+|+|+|+++|++|+|.           +.|......  ......+.  +.+|.......
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR  178 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence            4678999999999999999999999999999999983           233222100  00001111  22221110000


Q ss_pred             cc-ccccCCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCcccccc
Q 029421           67 PL-ASINASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSS  124 (193)
Q Consensus        67 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~  124 (193)
                      .. ..... .................+.++.+++....                    ++.+|++|||||| ++||+..+
T Consensus       179 ~~~~~~~~-v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~  257 (608)
T 3j16_B          179 AIKGPVQK-VGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR  257 (608)
T ss_dssp             HCSSSSSH-HHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred             hhcchhhH-HHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHH
Confidence            00 00000 00000000001112344566666665432                    7899999999999 69999999


Q ss_pred             chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          125 SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       125 ~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ..+.++++.+++ |.|||++      |||++++..+||++
T Consensus       258 ~~l~~~l~~l~~~g~tvi~v------tHdl~~~~~~~drv  291 (608)
T 3j16_B          258 LNAAQIIRSLLAPTKYVICV------EHDLSVLDYLSDFV  291 (608)
T ss_dssp             HHHHHHHHGGGTTTCEEEEE------CSCHHHHHHHCSEE
T ss_pred             HHHHHHHHHHHhCCCEEEEE------eCCHHHHHHhCCEE
Confidence            999999999877 9999999      99999999999984

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.91  E-value=5.9e-26  Score=214.77  Aligned_cols=167  Identities=13%  Similarity=0.164  Sum_probs=121.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCc-ccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDR-RAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~   77 (193)
                      |+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...  ...|++++|+||++..+ .+..+|+.+....
T Consensus      1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~ 1179 (1321)
T 4f4c_A         1100 FSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179 (1321)
T ss_dssp             EEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC
Confidence            57999999999999999999999999999999999999999998543  34567899999998432 3556676543211


Q ss_pred             CCCCCcccceeeehhhhhhhcccc-------------------cc------------cCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPE-------------------LQ------------VGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~------------l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .    .. ..+...++++..++.+                   ++            ++.+|++|||||| ++||+.+..
T Consensus      1180 ~----~~-sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~ 1254 (1321)
T 4f4c_A         1180 S----SV-TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254 (1321)
T ss_dssp             T----TS-CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHH
T ss_pred             C----CC-CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHH
Confidence            0    00 0111122222222210                   11            7899999999999 699999998


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      .+++.++.+.+|+|+|++      +|.+..+. .||++    +|.+  ++.+++++|.++
T Consensus      1255 ~Iq~~l~~~~~~~TvI~I------AHRLsTi~-~aD~I~Vld~G~I--vE~Gth~eLl~~ 1305 (1321)
T 4f4c_A         1255 VVQEALDRAREGRTCIVI------AHRLNTVM-NADCIAVVSNGTI--IEKGTHTQLMSE 1305 (1321)
T ss_dssp             HHHHHHTTTSSSSEEEEE------CSSSSTTT-TCSEEEEESSSSE--EEEECHHHHHHC
T ss_pred             HHHHHHHHHcCCCEEEEe------ccCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhC
Confidence            888888887779999999      99988775 47883    3443  334567777654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.90  E-value=1.3e-25  Score=211.97  Aligned_cols=154  Identities=12%  Similarity=0.147  Sum_probs=110.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++.+||++|++.. ..+..+|+.+....
T Consensus       411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~  490 (1284)
T 3g5u_A          411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED  490 (1284)
T ss_dssp             EEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCC
Confidence            57899999999999999999999999999999999999999997532  2345679999998832 23566665543221


Q ss_pred             CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. ......   .....+.++.+  ++.        .++            ++.+|++|||||| ++||+.+...+.+.+
T Consensus       491 ~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l  569 (1284)
T 3g5u_A          491 VT-MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL  569 (1284)
T ss_dssp             CC-HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            00 000000   00011111111  111        111            7789999999999 699999988888888


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.+.+|+|+|++      ||++..+.. ||+
T Consensus       570 ~~~~~~~t~i~i------tH~l~~i~~-~d~  593 (1284)
T 3g5u_A          570 DKAREGRTTIVI------AHRLSTVRN-ADV  593 (1284)
T ss_dssp             HHHHTTSEEEEE------CSCHHHHTT-CSE
T ss_pred             HHHcCCCEEEEE------ecCHHHHHc-CCE
Confidence            887779999999      999998865 887

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.90  E-value=8.2e-26  Score=174.93  Aligned_cols=136  Identities=18%  Similarity=0.190  Sum_probs=80.7

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch-hhccCCceeeEEEeecCCcccccccccCCCCCCCCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG-EIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRW   81 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~-~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      |++|++++|+||||||||||+++|+|+ +|++|+|..  .+.. .....++.+||+||++......+......  .....
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~--~~~~~   93 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHD--ALRDM   93 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC------CTTTHHHHH--HHTTT
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCHHHHHHHHHHHHHH--HHHHh
Confidence            568999999999999999999999999 999999953  2221 11233567999999751111000000000  00000


Q ss_pred             Ccccceeeehhhhhhhcccc-------cccCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCCh
Q 029421           82 PTVGRYKVDVASFEAIALPE-------LQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDI  153 (193)
Q Consensus        82 ~~~~~~~~~~~~l~~~~l~~-------~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~  153 (193)
                      .   ......+.++. ++..       ..++.+|++|||||| ++    ++..+.++++.+.+|+||| +      |||+
T Consensus        94 ~---~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-v------tHd~  158 (208)
T 3b85_A           94 V---EPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-V------TGDI  158 (208)
T ss_dssp             S---CTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-E------EEC-
T ss_pred             c---cHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-E------ECCH
Confidence            0   01112233333 3321       227899999999999 47    6777888888773389999 9      8988


Q ss_pred             hHHHH
Q 029421          154 PAVAR  158 (193)
Q Consensus       154 ~~~~~  158 (193)
                      +++..
T Consensus       159 ~~~~~  163 (208)
T 3b85_A          159 TQVDL  163 (208)
T ss_dssp             -----
T ss_pred             HHHhC
Confidence            77654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.90  E-value=1.3e-24  Score=205.62  Aligned_cols=163  Identities=13%  Similarity=0.178  Sum_probs=119.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+.++|+||||||||||+++|.|+++|++|+|.++|.++...  ...++++||++|++.- ..+..+|+.+....
T Consensus       439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~  518 (1321)
T 4f4c_A          439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG  518 (1321)
T ss_dssp             EEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred             EeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc
Confidence            57899999999999999999999999999999999999999998543  3346789999999832 34667777654321


Q ss_pred             CCCCCcccceeeehhhhhhhccc-------------------cc------------ccCCCCCEEEEecC-CCccccccc
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-------------------EL------------QVGADTDLFVIDEV-GKMELFSSS  125 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-------------------~~------------~l~~~p~llllDEp-~~LD~~~~~  125 (193)
                      .      . .+...++++..++.                   .+            ++..+|+++||||| ++||+.+..
T Consensus       519 ~------~-~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~  591 (1321)
T 4f4c_A          519 I------T-REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG  591 (1321)
T ss_dssp             C------C-HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHH
T ss_pred             c------h-HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHH
Confidence            1      0 11111222211110                   01            18899999999999 699999988


Q ss_pred             hHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHH
Q 029421          126 FFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLK  179 (193)
Q Consensus       126 ~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~  179 (193)
                      .+.+.+..+.+|+|+|++      +|++..+. .||++    +|.++  ..++.++|.
T Consensus       592 ~i~~~l~~~~~~~T~iii------aHrls~i~-~aD~Iivl~~G~iv--e~Gth~eL~  640 (1321)
T 4f4c_A          592 IVQQALDKAAKGRTTIII------AHRLSTIR-NADLIISCKNGQVV--EVGDHRALM  640 (1321)
T ss_dssp             HHHHHHHHHHTTSEEEEE------CSCTTTTT-TCSEEEEEETTEEE--EEECHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEE------cccHHHHH-hCCEEEEeeCCeee--ccCCHHHHH
Confidence            889988888889999999      99988664 58873    34433  334555554

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.88  E-value=1.1e-23  Score=188.02  Aligned_cols=154  Identities=15%  Similarity=0.123  Sum_probs=84.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHH---------------------HHHHhhcccCCC-------CeEEeceEchhhccCCc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLI---------------------MRVLESLKASNP-------SLKVQGFYTGEIRQGGQ   52 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl---------------------~~i~gl~~~~~G-------~i~~~g~~~~~~~~~~~   52 (193)
                      |+|++|++++|+||||||||||+                     +++.|+.+|+.|       .|.++|......  .+.
T Consensus        39 l~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~--~~~  116 (670)
T 3ux8_A           39 VEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRN--PRS  116 (670)
T ss_dssp             EEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-------CC
T ss_pred             EEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhcc--chh
Confidence            57899999999999999999998                     899999999854       444444432111  122


Q ss_pred             eeeEEEeecC---------------------CcccccccccCCCCCCCC-CCccccee------eehhhhhhhccccc--
Q 029421           53 RVGFEVVTLD---------------------DRRAPLASINASSPESYR-WPTVGRYK------VDVASFEAIALPEL--  102 (193)
Q Consensus        53 ~ig~~~q~~~---------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~l~~~~l~~~--  102 (193)
                      .+|+++|...                     ..+++.+++.+....... ........      .....++.+++...  
T Consensus       117 ~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~  196 (670)
T 3ux8_A          117 TVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTL  196 (670)
T ss_dssp             BHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCCT
T ss_pred             ceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhh
Confidence            3444333210                     112333332221000000 00000000      01122455555421  


Q ss_pred             -------c------------cCCCCC--EEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH
Q 029421          103 -------Q------------VGADTD--LFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL  159 (193)
Q Consensus       103 -------~------------l~~~p~--llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~  159 (193)
                             +            |+.+|+  +|||||| ++||+..+..+.++++.+++ |.|||+|      |||++.+. .
T Consensus       197 ~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~v------tHd~~~~~-~  269 (670)
T 3ux8_A          197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV------EHDEDTML-A  269 (670)
T ss_dssp             TCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEE------CCCHHHHH-H
T ss_pred             cCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEE------eCCHHHHh-h
Confidence                   1            778887  9999999 69999999999999999876 9999999      99998765 5


Q ss_pred             hcCC
Q 029421          160 RNHP  163 (193)
Q Consensus       160 ~d~~  163 (193)
                      ||++
T Consensus       270 ~d~i  273 (670)
T 3ux8_A          270 ADYL  273 (670)
T ss_dssp             CSEE
T ss_pred             CCEE
Confidence            8883

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.3e-23  Score=179.74  Aligned_cols=142  Identities=11%  Similarity=0.043  Sum_probs=95.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-C-eEEeceEchhhccCCceeeEEEeecC--C---cccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-S-LKVQGFYTGEIRQGGQRVGFEVVTLD--D---RRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~-i~~~g~~~~~~~~~~~~ig~~~q~~~--~---~~~~~~~~~~   73 (193)
                      |++++|++++|+||||||||||+|+|+|+++|++| + |.++|.       .++.++|+||+..  .   ..+..++. +
T Consensus       133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-------~~~~i~~vpq~~~l~~~~~~~tv~eni-~  204 (460)
T 2npi_A          133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-------PQQPIFTVPGCISATPISDILDAQLPT-W  204 (460)
T ss_dssp             HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-------TTSCSSSCSSCCEEEECCSCCCTTCTT-C
T ss_pred             eEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-------ccCCeeeeccchhhcccccccchhhhh-c
Confidence            46889999999999999999999999999999999 9 999982       2466888888651  1   12233332 2


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhccccc------------------c--cCCCCCE----EEEec-C-CCccccccchH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPEL------------------Q--VGADTDL----FVIDE-V-GKMELFSSSFF  127 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------------~--l~~~p~l----lllDE-p-~~LD~~~~~~~  127 (193)
                      ....... .  .......++++.+++...                  .  ++.+|++    +|||| | ++||+. ...+
T Consensus       205 ~~~~~~~-~--~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l  280 (460)
T 2npi_A          205 GQSLTSG-A--TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAEL  280 (460)
T ss_dssp             SCBCBSS-C--CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHH
T ss_pred             ccccccC-c--chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHH
Confidence            1110000 0  001112223333333221                  2  6789999    99999 8 699998 5455


Q ss_pred             HHHHHHHhCCCcEEEEecCCCCCCChh------HHHHHhcC
Q 029421          128 PAVLRILESNIPVLASIPAPKSGRDIP------AVARLRNH  162 (193)
Q Consensus       128 ~~ll~~l~~g~tvl~~~~~~~~tHd~~------~~~~~~d~  162 (193)
                      .++++.+  +.|+|++      +|+.+      ++.++||+
T Consensus       281 ~~l~~~~--~~tviiV------th~~~~~l~~~~~~~~~dr  313 (460)
T 2npi_A          281 HHIIEKL--NVNIMLV------LCSETDPLWEKVKKTFGPE  313 (460)
T ss_dssp             HHHHHHT--TCCEEEE------ECCSSCTHHHHHHHHHHHH
T ss_pred             HHHHHHh--CCCEEEE------EccCchhhhHHHHHHhccc
Confidence            5554443  7899999      77766      77889997

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.88  E-value=6.8e-24  Score=193.91  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=39.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      |+|.+|++++|+||||||||||+|+|+|+++|++|+|+++|
T Consensus       694 l~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          694 FQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             EEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence            57899999999999999999999999999999999999975

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.88  E-value=3.2e-25  Score=171.01  Aligned_cols=152  Identities=10%  Similarity=0.031  Sum_probs=92.2

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCCC--
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINASS--   75 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~--   75 (193)
                      +|++|++++|+||||||||||+|+|+|+++    .+.+++.....  ....++.++|+||++.  ...+..+++....  
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~   91 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI   91 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhh
Confidence            688999999999999999999999999986    35554432211  1122456899999752  1111111110000  


Q ss_pred             C---CCCCCCcccceeeehhh------hhhhccc--------cc-ccCCCCCEEEEecC-CCc----cccccchHHHHHH
Q 029421           76 P---ESYRWPTVGRYKVDVAS------FEAIALP--------EL-QVGADTDLFVIDEV-GKM----ELFSSSFFPAVLR  132 (193)
Q Consensus        76 ~---~~~~~~~~~~~~~~~~~------l~~~~l~--------~~-~l~~~p~llllDEp-~~L----D~~~~~~~~~ll~  132 (193)
                      .   ...............+.      ++.+++.        .+ .++.+|++++|||| +++    |+..+..+.++++
T Consensus        92 ~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~  171 (207)
T 1znw_A           92 HGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARI  171 (207)
T ss_dssp             GGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHH
T ss_pred             cCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            0   00000000000011111      2222322        12 26789999999999 576    6667778888888


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+. + |.|+|++      |||++++.++||++
T Consensus       172 ~l~~~~g~tvi~v------tHdl~~~~~~~d~i  198 (207)
T 1znw_A          172 ELAAQGDFDKVVV------NRRLESACAELVSL  198 (207)
T ss_dssp             HHHGGGGSSEEEE------CSSHHHHHHHHHHH
T ss_pred             HHhhhccCcEEEE------CCCHHHHHHHHHHH
Confidence            875 4 8999999      99999999999984

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.86  E-value=1.8e-22  Score=184.59  Aligned_cols=135  Identities=16%  Similarity=0.246  Sum_probs=97.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec---CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL---DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~---~~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+|+|+|      |+|  +|.+..    ...+++|++|++   ....++.+++...   
T Consensus       456 l~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----~~~~~~~v~q~~~~~~~~ltv~e~l~~~---  520 (986)
T 2iw3_A          456 LRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----EECRTVYVEHDIDGTHSDTSVLDFVFES---  520 (986)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----TTSCEEETTCCCCCCCTTSBHHHHHHTT---
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----cceeEEEEcccccccccCCcHHHHHHHh---
Confidence            5789999999999999999999999996      554  443321    112367877753   2234444544321   


Q ss_pred             CCCCCcccceeeehhhhhhhccc-c--------cc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           78 SYRWPTVGRYKVDVASFEAIALP-E--------LQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~-~--------~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                      ...   .  .....+.++.+++. .        ++            ++.+|++|||||| ++||+.++..+.++++.  
T Consensus       521 ~~~---~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--  593 (986)
T 2iw3_A          521 GVG---T--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--  593 (986)
T ss_dssp             CSS---C--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--
T ss_pred             hcC---H--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--
Confidence            000   0  22344566666663 1        22            7899999999999 69999999988888887  


Q ss_pred             CCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          136 SNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       136 ~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .|.|||++      |||++++..+||++
T Consensus       594 ~g~tvIiv------SHdl~~l~~~adri  615 (986)
T 2iw3_A          594 CGITSITI------SHDSVFLDNVCEYI  615 (986)
T ss_dssp             SCSEEEEE------CSCHHHHHHHCSEE
T ss_pred             CCCEEEEE------ECCHHHHHHhCCEE
Confidence            58999999      99999999999983

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.84  E-value=3.9e-23  Score=154.99  Aligned_cols=129  Identities=11%  Similarity=0.048  Sum_probs=81.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHH------------HHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeecCCcc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIM------------RVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTLDDRR   65 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~------------~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~~~~~   65 (193)
                      |++++|++++|+||||||||||+|            .+.|++.++.|.+.+.+.......   ......|+..+      
T Consensus         4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------   77 (171)
T 4gp7_A            4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTV------   77 (171)
T ss_dssp             EEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEE------
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEE------
Confidence            578999999999999999999999            777777777776666553211100   00011111111      


Q ss_pred             cccccccCCCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccc----------------cchHH
Q 029421           66 APLASINASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFS----------------SSFFP  128 (193)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~----------------~~~~~  128 (193)
                        .++.        .......       -+++.+. ..++.+|++++|||| ++||+..                +..+.
T Consensus        78 --~~~~--------~~~s~g~-------~qrv~iA-ral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~  139 (171)
T 4gp7_A           78 --VDAT--------NVQESAR-------KPLIEMA-KDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK  139 (171)
T ss_dssp             --EESC--------CCSHHHH-------HHHHHHH-HHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH
T ss_pred             --EECC--------CCCHHHH-------HHHHHHH-HHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh
Confidence              0000        0000000       1111211 126789999999999 6999984                35667


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChhHHHHH
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIPAVARL  159 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~  159 (193)
                      ++++.+++ |.|+|++      |||++++.++
T Consensus       140 ~~l~~l~~~g~tvi~v------tH~~~~~~~~  165 (171)
T 4gp7_A          140 KSIKGLQREGFRYVYI------LNSPEEVEEV  165 (171)
T ss_dssp             HHSTTHHHHTCSEEEE------ECSHHHHHHE
T ss_pred             hhhhhHHhcCCcEEEE------eCCHHHhhhh
Confidence            77766655 9999999      9999988764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.82  E-value=9e-22  Score=166.09  Aligned_cols=132  Identities=14%  Similarity=0.048  Sum_probs=87.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCCCCCcccc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESYRWPTVGR   86 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~   86 (193)
                      +++|+||||||||||+|+|+|+++|++|+|.++|.+..     +  .++++|++. +..+..++..+....         
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-----~--~~~v~q~~~~~~ltv~D~~g~~~~~---------  134 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-----M--ERHPYKHPNIPNVVFWDLPGIGSTN---------  134 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---------C--CCEEEECSSCTTEEEEECCCGGGSS---------
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-----e--eEEeccccccCCeeehHhhcccchH---------
Confidence            99999999999999999999999999999999886542     1  267888642 233333332221100         


Q ss_pred             eeeehhhhhhhccc------------------------------ccccCCCCCEEEEecC-CCccccccchHHHHHHHHh
Q 029421           87 YKVDVASFEAIALP------------------------------ELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRILE  135 (193)
Q Consensus        87 ~~~~~~~l~~~~l~------------------------------~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~  135 (193)
                       ....+.++.+++.                              -+....+|+++++||| ++||+..+..+.++++.+.
T Consensus       135 -~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~  213 (413)
T 1tq4_A          135 -FPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC  213 (413)
T ss_dssp             -CCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence             0111122221111                              1113349999999999 6999999988888887762


Q ss_pred             -----C-C----CcEEEEecCCCCCCChhH--HHHHhcC
Q 029421          136 -----S-N----IPVLASIPAPKSGRDIPA--VARLRNH  162 (193)
Q Consensus       136 -----~-g----~tvl~~~~~~~~tHd~~~--~~~~~d~  162 (193)
                           + |    .+|+++      +|++..  +.++||+
T Consensus       214 ~~~l~~~g~~~~~iiliS------sh~l~~~~~e~L~d~  246 (413)
T 1tq4_A          214 VNTFRENGIAEPPIFLLS------NKNVCHYDFPVLMDK  246 (413)
T ss_dssp             HHHHHHTTCSSCCEEECC------TTCTTSTTHHHHHHH
T ss_pred             HHHHHhcCCCCCcEEEEe------cCcCCccCHHHHHHH
Confidence                 2 3    457778      888876  8888887

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.80  E-value=1.4e-20  Score=153.15  Aligned_cols=161  Identities=16%  Similarity=0.159  Sum_probs=93.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------cc--CCceeeEEEeecC-Cc--ccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQ--GGQRVGFEVVTLD-DR--RAPLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~--~~~~ig~~~q~~~-~~--~~~~~   69 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+....      ..  .+..++|++|++. ..  .+..+
T Consensus        95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e  174 (302)
T 3b9q_A           95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK  174 (302)
T ss_dssp             CCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHH
Confidence            45789999999999999999999999999999999999999886322      11  1346899998643 11  12223


Q ss_pred             cccCCCCCCCC---CCcccceeeehhh---hh--hhcccccccCCCCC--EEEEecC-CCccccccchHHHHHHHHh-C-
Q 029421           70 SINASSPESYR---WPTVGRYKVDVAS---FE--AIALPELQVGADTD--LFVIDEV-GKMELFSSSFFPAVLRILE-S-  136 (193)
Q Consensus        70 ~~~~~~~~~~~---~~~~~~~~~~~~~---l~--~~~l~~~~l~~~p~--llllDEp-~~LD~~~~~~~~~ll~~l~-~-  136 (193)
                      ++.+.......   ....+........   +.  ++.+ ...++.+|+  +|++| | +|+|+..+      ++.+. . 
T Consensus       175 ~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~i-aral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~  246 (302)
T 3b9q_A          175 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAV-GKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVV  246 (302)
T ss_dssp             HHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHH-HTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHT
T ss_pred             HHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHH-HHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhc
Confidence            32211000000   0000000000111   11  1111 112678999  99999 9 69998743      23343 3 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEe
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTL  170 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~  170 (193)
                      |.|+|+++| .+.++....+..++++.+..+.++
T Consensus       247 g~t~iiiTh-lD~~~~~g~~l~~~~~~~~pi~~i  279 (302)
T 3b9q_A          247 GITGLILTK-LDGSARGGCVVSVVEELGIPVKFI  279 (302)
T ss_dssp             CCCEEEEEC-CSSCSCTHHHHHHHHHHCCCEEEE
T ss_pred             CCCEEEEeC-CCCCCccChheehHHHHCCCEEEE
Confidence            899999955 233444445555665544344444

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.80  E-value=3.5e-21  Score=171.75  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             cCCCC---CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          104 VGADT---DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       104 l~~~p---~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |+.+|   ++|||||| ++||+..+..+.++++.+++ |.|||+|      |||++.+ ..||++
T Consensus       558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~v------tHd~~~~-~~~d~i  615 (670)
T 3ux8_A          558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI------EHNLDVI-KTADYI  615 (670)
T ss_dssp             HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHH-TTCSEE
T ss_pred             HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE------eCCHHHH-HhCCEE
Confidence            55555   69999999 69999999999999998876 9999999      9999876 569984

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.80  E-value=3.1e-21  Score=167.74  Aligned_cols=143  Identities=17%  Similarity=0.198  Sum_probs=98.5

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHH--HHhhcccCCCCeEEeceEch-hhccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMR--VLESLKASNPSLKVQGFYTG-EIRQGGQRVGFEVVTLDDRRAPLASINASSPES   78 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~--i~gl~~~~~G~i~~~g~~~~-~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~   78 (193)
                      .|++|++++|+||||||||||+++  ++|+++|++|.|+++|.+.. ......+.+||++|++........ ....  . 
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~-~~~~--~-  110 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFI-LDAS--P-  110 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEE-EECC--C-
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEE-EecC--c-
Confidence            688999999999999999999999  78999999999999998752 222334568999987531111110 0000  0 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc------c-CCCCCEEEEecCC------CccccccchHHHHHHHHhC-CCcEEEEe
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ------V-GADTDLFVIDEVG------KMELFSSSFFPAVLRILES-NIPVLASI  144 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~------l-~~~p~llllDEp~------~LD~~~~~~~~~ll~~l~~-g~tvl~~~  144 (193)
                         ..     ...+.++.+++..+.      + ..+|+++++|||+      ++|+..+..+.++++.+++ |+|||++ 
T Consensus       111 ---~~-----~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~i-  181 (525)
T 1tf7_A          111 ---DP-----EGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMT-  181 (525)
T ss_dssp             ---CS-----SCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEE-
T ss_pred             ---cc-----chhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEE-
Confidence               00     011122223322211      2 2589999999994      2577888889999999877 9999999 


Q ss_pred             cCCCCCCChhH---------HHHHhcC
Q 029421          145 PAPKSGRDIPA---------VARLRNH  162 (193)
Q Consensus       145 ~~~~~tHd~~~---------~~~~~d~  162 (193)
                           ||++++         +..+||+
T Consensus       182 -----tH~~~~~~~~~~~~i~~~laD~  203 (525)
T 1tf7_A          182 -----TERIEEYGPIARYGVEEFVSDN  203 (525)
T ss_dssp             -----EECSSSSSCSSTTSCHHHHCSE
T ss_pred             -----ecCCCCccccccccceeeeeeE
Confidence                 888877         3556887

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.78  E-value=8.7e-20  Score=150.19  Aligned_cols=118  Identities=14%  Similarity=0.081  Sum_probs=81.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|.|.++|.+.......+..++++++                   . 
T Consensus       166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-------------------g-  225 (330)
T 2pt7_A          166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-------------------G-  225 (330)
T ss_dssp             HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-------------------T-
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-------------------C-
Confidence            35778999999999999999999999999999999999998642111112333444321                   0 


Q ss_pred             CCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCC-CcEEEEecCCCCCCChhHHHHH
Q 029421           81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESN-IPVLASIPAPKSGRDIPAVARL  159 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g-~tvl~~~~~~~~tHd~~~~~~~  159 (193)
                          +.  .....+.      ..+..+|+++++|||++      ....++++.+..| .|+|++      +|+.. +...
T Consensus       226 ----g~--~~r~~la------~aL~~~p~ilildE~~~------~e~~~~l~~~~~g~~tvi~t------~H~~~-~~~~  280 (330)
T 2pt7_A          226 ----NI--TSADCLK------SCLRMRPDRIILGELRS------SEAYDFYNVLCSGHKGTLTT------LHAGS-SEEA  280 (330)
T ss_dssp             ----TB--CHHHHHH------HHTTSCCSEEEECCCCS------THHHHHHHHHHTTCCCEEEE------EECSS-HHHH
T ss_pred             ----Ch--hHHHHHH------HHhhhCCCEEEEcCCCh------HHHHHHHHHHhcCCCEEEEE------EcccH-HHHH
Confidence                00  0001111      12568999999999965      2356677777664 589999      89877 6677


Q ss_pred             hcCC
Q 029421          160 RNHP  163 (193)
Q Consensus       160 ~d~~  163 (193)
                      ||++
T Consensus       281 ~dri  284 (330)
T 2pt7_A          281 FIRL  284 (330)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            8873

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.78  E-value=1.4e-19  Score=144.48  Aligned_cols=120  Identities=20%  Similarity=0.185  Sum_probs=78.5

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      ++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....  ....++++|...+         .       
T Consensus        21 ~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~--~~~~~~v~q~~~g---------l-------   82 (261)
T 2eyu_A           21 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--KHKKSIVNQREVG---------E-------   82 (261)
T ss_dssp             GGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC--CCSSSEEEEEEBT---------T-------
T ss_pred             hhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec--CCcceeeeHHHhC---------C-------
Confidence            46899999999999999999999999999998 999999886542111  1122333332100         0       


Q ss_pred             CCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHh
Q 029421           81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLR  160 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~  160 (193)
                       .. .       .+ +..+. ..+..+|+++++|||+  |+...   ..+++....|.+|+++      +|+.+ +...|
T Consensus        83 -~~-~-------~l-~~~la-~aL~~~p~illlDEp~--D~~~~---~~~l~~~~~g~~vl~t------~H~~~-~~~~~  139 (261)
T 2eyu_A           83 -DT-K-------SF-ADALR-AALREDPDVIFVGEMR--DLETV---ETALRAAETGHLVFGT------LHTNT-AIDTI  139 (261)
T ss_dssp             -TB-S-------CH-HHHHH-HHHHHCCSEEEESCCC--SHHHH---HHHHHHHHTTCEEEEE------ECCSS-HHHHH
T ss_pred             -CH-H-------HH-HHHHH-HHHhhCCCEEEeCCCC--CHHHH---HHHHHHHccCCEEEEE------eCcch-HHHHH
Confidence             00 0       00 11111 1145699999999998  76553   3444444459999999      88865 45556


Q ss_pred             cC
Q 029421          161 NH  162 (193)
Q Consensus       161 d~  162 (193)
                      |+
T Consensus       140 dr  141 (261)
T 2eyu_A          140 HR  141 (261)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.78  E-value=2e-20  Score=157.79  Aligned_cols=52  Identities=17%  Similarity=0.059  Sum_probs=46.4

Q ss_pred             cCCCC--CEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGADT--DLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ++.+|  ++|||||| ++||+..+..+.++++.+.+|.+||+|      ||+...+ .+||+
T Consensus       310 l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~i------tH~~~~~-~~~d~  364 (415)
T 4aby_A          310 TVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV------THLAQIA-ARAHH  364 (415)
T ss_dssp             HHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEE------CSCHHHH-TTCSE
T ss_pred             HHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEE------eCcHHHH-hhcCe
Confidence            66789  99999999 699999999999999998778999999      9998655 57887

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.77  E-value=1.2e-20  Score=170.95  Aligned_cols=52  Identities=15%  Similarity=0.163  Sum_probs=46.9

Q ss_pred             cCCC---CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGAD---TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~---p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      |+.+   |+++||||| +|||+.++..+.++++.+.+ |.|||++      |||++++ ..||+
T Consensus       745 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvi------sHdl~~i-~~aDr  801 (842)
T 2vf7_A          745 LRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAV------EHKMQVV-AASDW  801 (842)
T ss_dssp             TSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHH-TTCSE
T ss_pred             HHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------cCCHHHH-HhCCE
Confidence            6665   799999999 69999999999999998866 9999999      9999988 68998

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.75  E-value=3.5e-19  Score=147.87  Aligned_cols=136  Identities=18%  Similarity=0.195  Sum_probs=82.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------cc--CCceeeEEEeecC-Cc--ccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQ--GGQRVGFEVVTLD-DR--RAPLA   69 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~--~~~~ig~~~q~~~-~~--~~~~~   69 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...      ..  .+..++|++|++. ..  .+..+
T Consensus       152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e  231 (359)
T 2og2_A          152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK  231 (359)
T ss_dssp             CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHH
T ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHH
Confidence            45789999999999999999999999999999999999999886321      11  1346899998643 11  12223


Q ss_pred             cccCCCCCCCC---CCcccceeeehhhhhhhc---c-cccccCCCCC--EEEEecC-CCccccccchHHHHHHHHh-C-C
Q 029421           70 SINASSPESYR---WPTVGRYKVDVASFEAIA---L-PELQVGADTD--LFVIDEV-GKMELFSSSFFPAVLRILE-S-N  137 (193)
Q Consensus        70 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~---l-~~~~l~~~p~--llllDEp-~~LD~~~~~~~~~ll~~l~-~-g  137 (193)
                      ++.+.......   ....+........+..+.   . -...++.+|+  +|++| | +|+|+..+      ++.+. . |
T Consensus       232 ~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~------~~~~~~~~g  304 (359)
T 2og2_A          232 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVG  304 (359)
T ss_dssp             HHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTC
T ss_pred             HHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH------HHHHHHhcC
Confidence            32211000000   000000000011111110   0 0112678999  99999 9 69998753      23333 3 8


Q ss_pred             CcEEEE
Q 029421          138 IPVLAS  143 (193)
Q Consensus       138 ~tvl~~  143 (193)
                      .|+|++
T Consensus       305 ~t~iii  310 (359)
T 2og2_A          305 ITGLIL  310 (359)
T ss_dssp             CCEEEE
T ss_pred             CeEEEE
Confidence            999999

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.75  E-value=2.2e-19  Score=163.44  Aligned_cols=52  Identities=15%  Similarity=0.218  Sum_probs=45.9

Q ss_pred             cCCC---CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGAD---TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~---p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      |+.+   |+++||||| +|||+.++..+.++++.+.+ |.|||++      |||++++ ..||+
T Consensus       860 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi------sHdl~~i-~~aDr  916 (972)
T 2r6f_A          860 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI------EHNLDVI-KTADY  916 (972)
T ss_dssp             HSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHH-TTCSE
T ss_pred             HhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE------cCCHHHH-HhCCE
Confidence            6655   599999999 69999999999999998876 9999999      9999886 57887

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.73  E-value=3.1e-18  Score=137.24  Aligned_cols=133  Identities=13%  Similarity=0.097  Sum_probs=66.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCCCCCCccc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPESYRWPTVG   85 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~   85 (193)
                      .++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++|++|+.  ....++.++..+............
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCC-CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            489999999999999999999999999999999987632 22346799999975  234455555444321110000000


Q ss_pred             ceeeehhhhhhhcccccc--------c-CCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEec
Q 029421           86 RYKVDVASFEAIALPELQ--------V-GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIP  145 (193)
Q Consensus        86 ~~~~~~~~l~~~~l~~~~--------l-~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~  145 (193)
                      ........+...-...++        + ...+.++++||| .++|+..    .++++.+.+..+||++++
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~~~vI~Vi~  148 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKVVNIIPVIA  148 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTTSEEEEEET
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhcCcEEEEEe
Confidence            000000111110001111        1 124459999999 6999876    455555554478888854

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.72  E-value=7.4e-18  Score=153.82  Aligned_cols=53  Identities=15%  Similarity=0.214  Sum_probs=45.8

Q ss_pred             cCCC---CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          104 VGAD---TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       104 l~~~---p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |+.+   |++|||||| +|||+.++..+.++++.+.+ |.|||++      |||++.+. .||++
T Consensus       820 L~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI------~HdL~~i~-~ADrI  877 (916)
T 3pih_A          820 LRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVI------EHNLDVIK-NADHI  877 (916)
T ss_dssp             HTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCHHHHT-TCSEE
T ss_pred             HhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHH-hCCEE
Confidence            5554   579999999 69999999999999998876 9999999      99998775 48884

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.72  E-value=5e-18  Score=132.11  Aligned_cols=125  Identities=16%  Similarity=0.184  Sum_probs=81.8

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEchhhccCCceeeEEEeecCC--cccc----cccccCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD--RRAP----LASINAS   74 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~--~~~~----~~~~~~~   74 (193)
                      .++|++++|+||||||||||+++|+|+++|  ..|.|.+.+.+...  .....++|+||++..  ..+.    .++..+.
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~--~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~   90 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP--GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF   90 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT--TCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc--ccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence            578999999999999999999999999986  67888888765422  123568899986521  1111    2221110


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChh
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIP  154 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~  154 (193)
                      .    .     .+....+..+       .++..++++|||    ||+.++..+.+.+.   ++.+|+++      +|+++
T Consensus        91 ~----~-----~yg~~~~~v~-------~~l~~G~illLD----LD~~~~~~i~~~l~---~~~tI~i~------th~~~  141 (219)
T 1s96_A           91 G----N-----YYGTSREAIE-------QVLATGVDVFLD----IDWQGAQQIRQKMP---HARSIFIL------PPSKI  141 (219)
T ss_dssp             T----E-----EEEEEHHHHH-------HHHTTTCEEEEE----CCHHHHHHHHHHCT---TCEEEEEE------CSSHH
T ss_pred             h----c-----cCCCCHHHHH-------HHHhcCCeEEEE----ECHHHHHHHHHHcc---CCEEEEEE------CCCHH
Confidence            0    0     0111111111       123457999999    99998777766654   58899999      99987


Q ss_pred             HHHH
Q 029421          155 AVAR  158 (193)
Q Consensus       155 ~~~~  158 (193)
                      .+.+
T Consensus       142 ~l~~  145 (219)
T 1s96_A          142 ELDR  145 (219)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7644

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.70  E-value=3.8e-19  Score=137.90  Aligned_cols=145  Identities=14%  Similarity=0.067  Sum_probs=74.7

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhccc-------CCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKA-------SNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINAS   74 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-------~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~   74 (193)
                      +++|++++|+||||||||||+++|+|.+.+       ..+.+++++....    ..+++++++|.... ..+..+++.+.
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~   97 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----RPERIREIAQNRGLDPDEVLKHIYVA   97 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC----CHHHHHHHHHHTTSCHHHHHHTEEEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC----CHHHHHHHHHHcCCCHHHHhhcEEEE
Confidence            679999999999999999999999997655       2335666654321    11234444443310 11222222111


Q ss_pred             CCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecCC-Ccccccc------------chHHHHHHHH-hC-CCc
Q 029421           75 SPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVG-KMELFSS------------SFFPAVLRIL-ES-NIP  139 (193)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~-~LD~~~~------------~~~~~ll~~l-~~-g~t  139 (193)
                      ..    ..............+.+. ..+.-..+|+++++|||+ .+|+...            ..+...+..+ ++ |+|
T Consensus        98 ~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~t  172 (231)
T 4a74_A           98 RA----FNSNHQMLLVQQAEDKIK-ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA  172 (231)
T ss_dssp             EC----CSHHHHHHHHHHHHHHHH-HHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             ec----CChHHHHHHHHHHHHHHH-HhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCe
Confidence            00    000000000001111110 000014689999999994 7887431            1344444443 45 999


Q ss_pred             EEEEecCCCCCCChhH----HHHHhcC
Q 029421          140 VLASIPAPKSGRDIPA----VARLRNH  162 (193)
Q Consensus       140 vl~~~~~~~~tHd~~~----~~~~~d~  162 (193)
                      ||++      ||+...    +..+||+
T Consensus       173 vi~v------tH~~~~~g~~~~~~~d~  193 (231)
T 4a74_A          173 VFVT------NQVQANGGHILAHSATL  193 (231)
T ss_dssp             EEEE------EECC---------CCSE
T ss_pred             EEEE------eecccCcchhhHhhceE
Confidence            9999      885444    6666664

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.69  E-value=4.8e-18  Score=139.22  Aligned_cols=51  Identities=14%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+|+++||||| ++||+..+..+.++++.+.+|.+||++      ||+. .+..+||+.
T Consensus       240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~------tH~~-~~~~~~d~~  291 (322)
T 1e69_A          240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI------THNK-IVMEAADLL  291 (322)
T ss_dssp             SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEE------CCCT-TGGGGCSEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE------ECCH-HHHhhCceE
Confidence            67899999999 699999999999999888668899999      9995 456678873

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.69  E-value=2.1e-17  Score=152.76  Aligned_cols=131  Identities=23%  Similarity=0.272  Sum_probs=83.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceee-EEEeecCCcccccccccCCCCCCCCCCcc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVG-FEVVTLDDRRAPLASINASSPESYRWPTV   84 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~   84 (193)
                      |++++|+||||||||||||++ |++.+-                  .++| |+||+.. ..++++++.......... ..
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~------------------aqiG~~Vpq~~~-~l~v~d~I~~rig~~d~~-~~  847 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLAVM------------------AQMGCYVPAEVC-RLTPIDRVFTRLGASDRI-MS  847 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHHHH------------------HTTTCCEESSEE-EECCCSBEEEECC--------
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHHHH------------------hheeEEeccCcC-CCCHHHHHHHHcCCHHHH-hh
Confidence            899999999999999999999 997641                  1345 8887542 223333321100000000 00


Q ss_pred             cceeeehhhhhhhcccccccCCCCCEEEEecC-CCcccccc-chHHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHh
Q 029421           85 GRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSS-SFFPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLR  160 (193)
Q Consensus        85 ~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~  160 (193)
                      .......+ +..+.+ .+.++.+|+++||||| +|+|+... ..++++++.+. + |.++|++      ||+.+.+..++
T Consensus       848 ~~stf~~e-m~~~a~-al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~------TH~~el~~~~~  919 (1022)
T 2o8b_B          848 GESTFFVE-LSETAS-ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS------THYHSLVEDYS  919 (1022)
T ss_dssp             --CHHHHH-HHHHHH-HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE------CCCHHHHHHTS
T ss_pred             chhhhHHH-HHHHHH-HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE------eCCHHHHHHhC
Confidence            00000001 111110 1226789999999999 69999874 66788888875 4 8999999      99999999889


Q ss_pred             cCCCc
Q 029421          161 NHPGA  165 (193)
Q Consensus       161 d~~~~  165 (193)
                      +++..
T Consensus       920 d~~~v  924 (1022)
T 2o8b_B          920 QNVAV  924 (1022)
T ss_dssp             SCSSE
T ss_pred             Cccee
Confidence            98643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.69  E-value=6.5e-18  Score=130.86  Aligned_cols=149  Identities=13%  Similarity=0.115  Sum_probs=82.9

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch--hhccCCceeeEEEeecCCc-ccccccccCCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG--EIRQGGQRVGFEVVTLDDR-RAPLASINASSPES   78 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~--~~~~~~~~ig~~~q~~~~~-~~~~~~~~~~~~~~   78 (193)
                      .+++|++++|+||||||||||++.+++...++.|.+.+.+.+..  ........+++.++..... ....+..   ....
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   95 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDAL---MKEK   95 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECC---C---
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEecc---cccc
Confidence            36799999999999999999999999998888888887665431  1111111234433322110 0001100   0000


Q ss_pred             CCCCcccceeeehhhhhhhcccccccCCCCC--EEEEecC-CCc--cccccchHHHHHHHH-hC-CCcEEEEecCCCCCC
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQVGADTD--LFVIDEV-GKM--ELFSSSFFPAVLRIL-ES-NIPVLASIPAPKSGR  151 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~--llllDEp-~~L--D~~~~~~~~~ll~~l-~~-g~tvl~~~~~~~~tH  151 (193)
                      ......... ...+....+  .......+|+  ++++||| +.+  |+..+..+...++.+ ++ |+|||++      +|
T Consensus        96 ~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~------~h  166 (235)
T 2w0m_A           96 EDQWSLVNL-TPEELVNKV--IEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYAT------SQ  166 (235)
T ss_dssp             -CTTBCSSC-CHHHHHHHH--HHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEE------EC
T ss_pred             CceeeecCC-CHHHHHHHH--HHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEE------ec
Confidence            000000000 000111100  0011124899  9999999 455  887766677777666 34 9999999      88


Q ss_pred             Ch--------hHHHHHhcC
Q 029421          152 DI--------PAVARLRNH  162 (193)
Q Consensus       152 d~--------~~~~~~~d~  162 (193)
                      +.        ..+.++||+
T Consensus       167 ~~~~~~~~~~~~~~~~~d~  185 (235)
T 2w0m_A          167 YAITTSQAFGFGVEHVADG  185 (235)
T ss_dssp             -----------CHHHHCSE
T ss_pred             cCcccccccccchheeeeE
Confidence            87        447888887

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.68  E-value=1.5e-17  Score=146.78  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=77.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEch--h---hccCCceeeEEEeecC--CcccccccccCCCCCCC
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTG--E---IRQGGQRVGFEVVTLD--DRRAPLASINASSPESY   79 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~--~---~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~~   79 (193)
                      .++|+||||||||||+++|+|+..| ++|.|.++|.++.  .   ....+..+||++|+..  +..++.+++........
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~  126 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA  126 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence            4999999999999999999999988 7999999998852  1   2234578999998752  22233333211100000


Q ss_pred             CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC------C-CccccccchHHHHHHHH-hC--CCcEEEEecCCCC
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV------G-KMELFSSSFFPAVLRIL-ES--NIPVLASIPAPKS  149 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp------~-~LD~~~~~~~~~ll~~l-~~--g~tvl~~~~~~~~  149 (193)
                      . .....   ..   +.+.+ .......|+++++|||      + ++|+..+..+.++++.+ .+  +.+++++      
T Consensus       127 ~-~~~~~---s~---~~i~l-~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vv------  192 (608)
T 3szr_A          127 G-EGMGI---SH---ELITL-EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVV------  192 (608)
T ss_dssp             C-SSSCC---CS---CCEEE-EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEE------
T ss_pred             C-Ccccc---ch---HHHHH-HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEE------
Confidence            0 00000   00   00000 0113468999999999      5 89999998899999885 44  5666777      


Q ss_pred             CCChh
Q 029421          150 GRDIP  154 (193)
Q Consensus       150 tHd~~  154 (193)
                      +||.+
T Consensus       193 t~~~d  197 (608)
T 3szr_A          193 PSNVD  197 (608)
T ss_dssp             ESSSC
T ss_pred             eccch
Confidence            77765

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.67  E-value=3e-18  Score=133.13  Aligned_cols=151  Identities=12%  Similarity=0.060  Sum_probs=87.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---ccCCceeeEEEeecCCc--cc----ccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---RQGGQRVGFEVVTLDDR--RA----PLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---~~~~~~ig~~~q~~~~~--~~----~~~~~   71 (193)
                      |+|++|++++|+||||||||||+++|+|++ |  |+|.+ |.+....   ...+..++|+||++..+  ..    .+++.
T Consensus        18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~   93 (218)
T 1z6g_A           18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYD   93 (218)
T ss_dssp             ----CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred             eecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhh
Confidence            678999999999999999999999999999 5  99999 7664321   12245688999875211  10    11111


Q ss_pred             cCCCCCCCCCCcc--------cce---eeehhhhh--hhcc--c--ccccCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           72 NASSPESYRWPTV--------GRY---KVDVASFE--AIAL--P--ELQVGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        72 ~~~~~~~~~~~~~--------~~~---~~~~~~l~--~~~l--~--~~~l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      .+... ....+..        ...   ......-+  +..+  .  ...++.+|++++|||| +++|......+.+.+..
T Consensus        94 ~~~~~-~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~  172 (218)
T 1z6g_A           94 NYANN-FYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQ  172 (218)
T ss_dssp             EETTE-EEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             hcccc-cCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            11000 0000000        000   00001111  1122  1  1235568899999999 69998877666655544


Q ss_pred             Hh--------CCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          134 LE--------SNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       134 l~--------~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ..        .+.+.|++      +||++++...+++
T Consensus       173 ~~~~~~~~h~~~~d~iiv------~~~~~ea~~~~~~  203 (218)
T 1z6g_A          173 LNIELHEANLLNFNLSII------NDDLTLTYQQLKN  203 (218)
T ss_dssp             HHHHHHHHTTSCCSEEEE------CSSHHHHHHHHHH
T ss_pred             HHHHHHhhcccCCCEEEE------CCCHHHHHHHHHH
Confidence            32        35778888      8888887776654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.66  E-value=1.1e-16  Score=133.62  Aligned_cols=120  Identities=15%  Similarity=0.151  Sum_probs=79.0

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYR   80 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~   80 (193)
                      .+++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.+...  ..+..++|++|...+.    .           
T Consensus       132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~--~~~~~~~~v~Q~~~g~----~-----------  194 (372)
T 2ewv_A          132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--VFKHKKSIVNQREVGE----D-----------  194 (372)
T ss_dssp             TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS--CCCCSSSEEEEEEBTT----T-----------
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh--hhccCceEEEeeecCC----C-----------
Confidence            36789999999999999999999999999998 8999877754421  2344577888742100    0           


Q ss_pred             CCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHh
Q 029421           81 WPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLR  160 (193)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~  160 (193)
                       .  ...   ...+.      ..+..+|+++++|||.  |+..   +..+++....|.+|+.+      +|+.+ +...+
T Consensus       195 -~--~~~---~~~l~------~~L~~~pd~illdE~~--d~e~---~~~~l~~~~~g~~vi~t------~H~~~-~~~~~  250 (372)
T 2ewv_A          195 -T--KSF---ADALR------AALREDPDVIFVGEMR--DLET---VETALRAAETGHLVFGT------LHTNT-AIDTI  250 (372)
T ss_dssp             -B--SCS---HHHHH------HHTTSCCSEEEESCCC--SHHH---HHHHHHHHTTTCEEEEC------CCCCS-HHHHH
T ss_pred             -H--HHH---HHHHH------HHhhhCcCEEEECCCC--CHHH---HHHHHHHHhcCCEEEEE------ECcch-HHHHH
Confidence             0  000   01111      1145689999999997  4332   34455554448999988      78744 44444


Q ss_pred             cC
Q 029421          161 NH  162 (193)
Q Consensus       161 d~  162 (193)
                      ++
T Consensus       251 ~r  252 (372)
T 2ewv_A          251 HR  252 (372)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.65  E-value=4.9e-17  Score=132.34  Aligned_cols=137  Identities=12%  Similarity=0.049  Sum_probs=80.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------c--CCceeeEEEeecC--CcccccccccCC
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------Q--GGQRVGFEVVTLD--DRRAPLASINAS   74 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~--~~~~ig~~~q~~~--~~~~~~~~~~~~   74 (193)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.|.++....      .  .+..++|++|++.  +..+..+++...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999998863211      1  1345889998752  111222222110


Q ss_pred             CC---CCCCCCcccceeeehhh---hhhhcc-cccccCCCCCEEEEecCCCccccccchHHHHHHHHh-C-CCcEEEEec
Q 029421           75 SP---ESYRWPTVGRYKVDVAS---FEAIAL-PELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILE-S-NIPVLASIP  145 (193)
Q Consensus        75 ~~---~~~~~~~~~~~~~~~~~---l~~~~l-~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~-~-g~tvl~~~~  145 (193)
                      ..   ...-....+........   +.+... -...++.+|+.++|    .||+.+.....+.++.+. . |.|+|+++|
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh  256 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTK  256 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE----EEETTBCTHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE----EEcHHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence            00   00000000000000011   111100 01126788995555    467766666666777664 4 999999933

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.63  E-value=3.6e-16  Score=129.77  Aligned_cols=119  Identities=18%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccC-CCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKAS-NPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRW   81 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~-~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      +.+|++++|+||||||||||+++|+|+++|+ .|.|...+ +..+.. .....++++|......    .           
T Consensus       120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~-~~~~~~~v~q~~~~~~----~-----------  182 (356)
T 3jvv_A          120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV-HESKKCLVNQREVHRD----T-----------  182 (356)
T ss_dssp             HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC-CCCSSSEEEEEEBTTT----B-----------
T ss_pred             hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh-hhccccceeeeeeccc----c-----------
Confidence            4678899999999999999999999999987 45554333 221111 1112334444211000    0           


Q ss_pred             CcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhc
Q 029421           82 PTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRN  161 (193)
Q Consensus        82 ~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d  161 (193)
                            ....+.+.      ..|..+|+++++|||+  |...   +..+++....|.+|+++      +|+.+.+ ..+|
T Consensus       183 ------~~~~~~La------~aL~~~PdvillDEp~--d~e~---~~~~~~~~~~G~~vl~t------~H~~~~~-~~~d  238 (356)
T 3jvv_A          183 ------LGFSEALR------SALREDPDIILVGEMR--DLET---IRLALTAAETGHLVFGT------LHTTSAA-KTID  238 (356)
T ss_dssp             ------SCHHHHHH------HHTTSCCSEEEESCCC--SHHH---HHHHHHHHHTTCEEEEE------ESCSSHH-HHHH
T ss_pred             ------CCHHHHHH------HHhhhCcCEEecCCCC--CHHH---HHHHHHHHhcCCEEEEE------EccChHH-HHHH
Confidence                  00001111      1267899999999997  3222   23333433449999999      8887665 5666


Q ss_pred             C
Q 029421          162 H  162 (193)
Q Consensus       162 ~  162 (193)
                      +
T Consensus       239 R  239 (356)
T 3jvv_A          239 R  239 (356)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.62  E-value=7.5e-17  Score=130.28  Aligned_cols=42  Identities=19%  Similarity=0.323  Sum_probs=37.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEece
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGF   42 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~   42 (193)
                      +.+.+|++++|+||||||||||++.|+|.+.|++| .|.+.+.
T Consensus        30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~   72 (296)
T 1cr0_A           30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (296)
T ss_dssp             CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            46899999999999999999999999999999888 7765443

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.62  E-value=1.6e-16  Score=132.30  Aligned_cols=50  Identities=22%  Similarity=0.228  Sum_probs=45.4

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .+|+++||||| ++||+..+..+.++++.+.+ |.|||++      |||++. ...||+
T Consensus       302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~i------tH~~~~-~~~~d~  353 (365)
T 3qf7_A          302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFI------THDREF-SEAFDR  353 (365)
T ss_dssp             TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEE------ESCHHH-HTTCSC
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE------ecchHH-HHhCCE
Confidence            79999999999 69999999999999999876 9999999      999987 567887

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.62  E-value=4.6e-16  Score=127.03  Aligned_cols=102  Identities=16%  Similarity=0.040  Sum_probs=64.1

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCC-cccccccccCCCCCCCCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINASSPESYRW   81 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~   81 (193)
                      +++|++++|+||||||||||+++|+|+++|+.|.               .++++++|+... ..+..++..+..  ....
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~---------------~~v~~v~qd~~~~~~t~~e~~~~~~--~~g~  149 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH---------------PRVDLVTTDGFLYPNAELQRRNLMH--RKGF  149 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC---------------CCEEEEEGGGGBCCHHHHHHTTCTT--CTTS
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC---------------CeEEEEecCccCCcccHHHHHHHHH--hcCC
Confidence            7889999999999999999999999999997663               357899987631 114444432211  0111


Q ss_pred             Ccccceeeehhhhhhhccc-------c------------cccCCCCCEEEEecC-CCccc
Q 029421           82 PTVGRYKVDVASFEAIALP-------E------------LQVGADTDLFVIDEV-GKMEL  121 (193)
Q Consensus        82 ~~~~~~~~~~~~l~~~~l~-------~------------~~l~~~p~llllDEp-~~LD~  121 (193)
                      +.........+.++.++-.       .            ..++.+|+++|+||| ..+|+
T Consensus       150 ~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          150 PESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG  209 (312)
T ss_dssp             GGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             ChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence            1111111222333333210       1            126789999999999 57765

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.61  E-value=3.6e-16  Score=143.23  Aligned_cols=52  Identities=13%  Similarity=0.095  Sum_probs=42.6

Q ss_pred             CCCCCEEEEecC-CCccccccch-HHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          105 GADTDLFVIDEV-GKMELFSSSF-FPAVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~~-~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      +.+|+++||||| +|+|+..... ...+++.+. + |+++|++      ||+.+ +..+||+.
T Consensus       739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~a------TH~~e-l~~lad~~  794 (934)
T 3thx_A          739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA------THFHE-LTALANQI  794 (934)
T ss_dssp             CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEE------ESCGG-GGGGGGTC
T ss_pred             ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE------cCcHH-HHHHhccc
Confidence            689999999999 6999988754 478888875 4 9999999      99955 55688874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.60  E-value=3.1e-17  Score=126.03  Aligned_cols=31  Identities=26%  Similarity=0.252  Sum_probs=26.7

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +.++|++++|+||||||||||+++|+|++.|
T Consensus         2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~   32 (211)
T 3asz_A            2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE   32 (211)
T ss_dssp             ---CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999865

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.60  E-value=4.6e-16  Score=140.78  Aligned_cols=129  Identities=16%  Similarity=0.107  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCC
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWP   82 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~   82 (193)
                      ++|++++|+||||||||||||+|+|+.. ...|..      +.   .....++++++-+ ......+++.....      
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~------vp---a~~~~i~~~~~i~-~~~~~~d~l~~~~s------  668 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY------VP---AQKVEIGPIDRIF-TRVGAADDLASGRS------  668 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC------BS---SSEEEECCCCEEE-EEEC----------------
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc------cc---hhcccceeHHHHH-hhCCHHHHHHhhhh------
Confidence            5799999999999999999999999853 333421      11   1123345444311 11111121111000      


Q ss_pred             cccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccch-HHHHHHHHh-C-CCcEEEEecCCCCCCChhHHHH
Q 029421           83 TVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSF-FPAVLRILE-S-NIPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus        83 ~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~-~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~  158 (193)
                         .  ...+..+...  .+..+.+|+++||||| +|+|+..... ..++++.+. + |.++|++      ||+.+.+ .
T Consensus       669 ---t--f~~e~~~~~~--il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~------TH~~el~-~  734 (800)
T 1wb9_A          669 ---T--FMVEMTETAN--ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA------THYFELT-Q  734 (800)
T ss_dssp             ------CHHHHHHHHH--HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE------CSCGGGG-G
T ss_pred             ---h--hhHHHHHHHH--HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE------eCCHHHH-H
Confidence               0  0001111000  0124789999999999 6999988754 478888775 3 8999999      9997654 5


Q ss_pred             HhcC
Q 029421          159 LRNH  162 (193)
Q Consensus       159 ~~d~  162 (193)
                      +||+
T Consensus       735 l~d~  738 (800)
T 1wb9_A          735 LPEK  738 (800)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            7876

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.60  E-value=3.6e-17  Score=139.17  Aligned_cols=147  Identities=14%  Similarity=0.078  Sum_probs=89.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece---Echhh-------ccCCceeeEEEeecC---Ccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF---YTGEI-------RQGGQRVGFEVVTLD---DRRAP   67 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~---~~~~~-------~~~~~~ig~~~q~~~---~~~~~   67 (193)
                      |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+   ++...       ...++.++|++|...   ...+.
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v  231 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQG  231 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHH
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHH
Confidence            678999999999999999999999999999999999999998   33221       123467899998531   11222


Q ss_pred             cccccCCCCCCCCCCcccceeeehhhhhhh--ccccccc-CCCCCEEEEecCCCccccccchHHHHHHHHhC-----CC-
Q 029421           68 LASINASSPESYRWPTVGRYKVDVASFEAI--ALPELQV-GADTDLFVIDEVGKMELFSSSFFPAVLRILES-----NI-  138 (193)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~l-~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-----g~-  138 (193)
                      .++..+...... ... .......+.+.++  +....++ +.+|++     -+|+|+..+..+.+++..+.+     |. 
T Consensus       232 ~~~~~~~ae~~~-~~~-~~v~~~ld~l~~lS~g~qrvslAl~~p~~-----t~glD~~~~~~l~~ll~r~~~~~~~~Gsi  304 (438)
T 2dpy_A          232 AAYATRIAEDFR-DRG-QHVLLIMDSLTRYAMAQREIALAIGEPPA-----TKGYPPSVFAKLPALVERAGNGIHGGGSI  304 (438)
T ss_dssp             HHHHHHHHHHHH-TTT-CEEEEEEECHHHHHHHHHHHHHHTTCCCC-----SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred             HHHHHHHHHHHH-hCC-CCHHHHHHhHHHHHHHHHHHHHHhCCCcc-----cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence            222111100000 000 0000111111111  0011111 445554     249999999999999988743     54 


Q ss_pred             ----cEEEEecCCCCCCChhHHHHHhcC
Q 029421          139 ----PVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       139 ----tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                          ||+++      |||+.  ..+||+
T Consensus       305 T~~~tVlv~------tHdl~--~~iad~  324 (438)
T 2dpy_A          305 TAFYTVLTE------GDDQQ--DPIADS  324 (438)
T ss_dssp             EEEEEEECS------SSCSC--CHHHHH
T ss_pred             cceeEEEEe------CCCcc--chhhce
Confidence                88888      99986  445554

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.60  E-value=3e-16  Score=141.25  Aligned_cols=124  Identities=18%  Similarity=0.159  Sum_probs=73.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRW   81 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      +. |++++|+||||||||||+|+|+|+.. ++.|.+.-         ..+..+++++|-+ ...+..+++....      
T Consensus       574 l~-g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp---------a~~~~i~~v~~i~-~~~~~~d~l~~g~------  636 (765)
T 1ewq_A          574 MA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP---------AEEAHLPLFDGIY-TRIGASDDLAGGK------  636 (765)
T ss_dssp             ES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS---------SSEEEECCCSEEE-EECCC------CC------
T ss_pred             CC-CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee---------hhccceeeHHHhh-ccCCHHHHHHhcc------
Confidence            44 99999999999999999999999974 77786521         1234566665521 1122222221110      


Q ss_pred             Ccccceeeehhhhhhhcccc-cccCCCCCEEEEecC---C-CccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH
Q 029421           82 PTVGRYKVDVASFEAIALPE-LQVGADTDLFVIDEV---G-KMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus        82 ~~~~~~~~~~~~l~~~~l~~-~~l~~~p~llllDEp---~-~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~  155 (193)
                      ..     .   ..+.+.+.. +..+.+|+++|||||   + ++|+.+..  .++++.+.+ |.++|++      ||+.+.
T Consensus       637 S~-----~---~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~--~~i~~~L~~~g~~vl~~------TH~~~l  700 (765)
T 1ewq_A          637 ST-----F---MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIA--TAVAEALHERRAYTLFA------THYFEL  700 (765)
T ss_dssp             SH-----H---HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHH--HHHHHHHHHHTCEEEEE------CCCHHH
T ss_pred             cH-----H---HHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHH--HHHHHHHHhCCCEEEEE------eCCHHH
Confidence            00     0   011111111 113789999999999   4 68876542  233333433 8999999      999765


Q ss_pred             HHHHh
Q 029421          156 VARLR  160 (193)
Q Consensus       156 ~~~~~  160 (193)
                      + .++
T Consensus       701 ~-~~~  704 (765)
T 1ewq_A          701 T-ALG  704 (765)
T ss_dssp             H-TCC
T ss_pred             H-Hhh
Confidence            4 455

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.59  E-value=3.7e-15  Score=122.69  Aligned_cols=160  Identities=13%  Similarity=0.126  Sum_probs=85.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh-hcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCccc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLE-SLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVG   85 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~g-l~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (193)
                      ..+.|.||||+||||+++++++ ++.|+.|.+.++|.+.......+..++++++...     +.   +..... ....  
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~-~~~~--  105 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH-----LE---ITPSDM-GNND--  105 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE-----EE---ECCC-----CC--
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce-----EE---ecHhhc-CCcc--
Confidence            3499999999999999999999 7899999999998765322223456777766431     00   000000 0000  


Q ss_pred             ceeeehhhhhh----hcccc---cc-cCCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH-H
Q 029421           86 RYKVDVASFEA----IALPE---LQ-VGADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA-V  156 (193)
Q Consensus        86 ~~~~~~~~l~~----~~l~~---~~-l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~-~  156 (193)
                      . ....+.++.    ..+..   ++ +..+|+++++|||..||+.++..+.+++.....+.++|++      ||+... .
T Consensus       106 ~-~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~------t~~~~~l~  178 (354)
T 1sxj_E          106 R-IVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV------CDSMSPII  178 (354)
T ss_dssp             H-HHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEE------ESCSCSSC
T ss_pred             h-HHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEE------eCCHHHHH
Confidence            0 001111111    11110   01 2568999999999669988877777777776558899999      676543 2


Q ss_pred             HHHhcCCCcEEEEeCCCChhHHHHHHHHHH
Q 029421          157 ARLRNHPGATIFTLSPGNRDSLKDNIYYQL  186 (193)
Q Consensus       157 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~  186 (193)
                      ..+.+|.  ..+.+.+.+.+++.+.+....
T Consensus       179 ~~l~sR~--~~~~~~~~~~~~~~~~l~~~~  206 (354)
T 1sxj_E          179 APIKSQC--LLIRCPAPSDSEISTILSDVV  206 (354)
T ss_dssp             HHHHTTS--EEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHhhc--eEEecCCcCHHHHHHHHHHHH
Confidence            3455553  455666667767666665543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.58  E-value=5.8e-16  Score=114.59  Aligned_cols=57  Identities=19%  Similarity=0.236  Sum_probs=46.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL   61 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~   61 (193)
                      |++++|++++|+||||||||||+|+|+|++ |++|+|.++|+++.......   .+++|++
T Consensus        28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~---~~~~q~~   84 (158)
T 1htw_A           28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIA---GKMIYHF   84 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEET---TEEEEEE
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCC---Ccceecc
Confidence            468999999999999999999999999999 99999999998763221111   2677765

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.58  E-value=3.9e-16  Score=142.63  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=74.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~   79 (193)
                      |++++|++++|+||||||||||||+++++.-. ..|.. +     .   .....++++.+       .+..+..  ....
T Consensus       668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-v-----p---a~~~~i~~~d~-------i~~~ig~--~d~l  729 (918)
T 3thx_B          668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-V-----P---AEEATIGIVDG-------IFTRMGA--ADNI  729 (918)
T ss_dssp             ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-B-----S---SSEEEEECCSE-------EEEEC--------
T ss_pred             ccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-c-----c---chhhhhhHHHH-------HHHhCCh--HHHH
Confidence            45778999999999999999999999876321 11211 0     0   00111111100       0111000  0000


Q ss_pred             CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCccccccchH-HHHHHHHh-C-CCcEEEEecCCCCCCChhH
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSSSFF-PAVLRILE-S-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~~~~-~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~  155 (193)
                      .... .  ....+..+...+.  ..+.+|+++||||| +|+|+.....+ ..+++.+. + |.++|++      ||+.+.
T Consensus       730 ~~~~-s--tfs~em~~~~~il--~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v------TH~~el  798 (918)
T 3thx_B          730 YKGR-S--TFMEELTDTAEII--RKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV------THYPPV  798 (918)
T ss_dssp             -----C--CHHHHHHHHHHHH--HHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE------CSCGGG
T ss_pred             HHhH-H--HhhHHHHHHHHHH--HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE------eCcHHH
Confidence            0000 0  0001111111111  12689999999999 69999887555 48888774 4 9999999      999765


Q ss_pred             HHHHhcCC
Q 029421          156 VARLRNHP  163 (193)
Q Consensus       156 ~~~~~d~~  163 (193)
                      + .++++.
T Consensus       799 ~-~l~~~~  805 (918)
T 3thx_B          799 C-ELEKNY  805 (918)
T ss_dssp             G-GHHHHT
T ss_pred             H-HHHhhc
Confidence            4 566653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.58  E-value=2e-15  Score=110.55  Aligned_cols=85  Identities=13%  Similarity=0.194  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTV   84 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~   84 (193)
                      +|+.++|+||||||||||++++++.+.+ +|.                ++.|+....   .  ..           .   
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~----------------~~~~~~~~~---~--~~-----------~---   78 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK----------------NAAYIDAAS---M--PL-----------T---   78 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC----------------CEEEEETTT---S--CC-----------C---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC----------------cEEEEcHHH---h--hH-----------H---
Confidence            6899999999999999999999999876 351                112222100   0  00           0   


Q ss_pred             cceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhC-CCc-EEEE
Q 029421           85 GRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIP-VLAS  143 (193)
Q Consensus        85 ~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~t-vl~~  143 (193)
                                        .++.+|++|++|||+.++...+..+..++..+.+ |++ +|++
T Consensus        79 ------------------~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiit  121 (149)
T 2kjq_A           79 ------------------DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLG  121 (149)
T ss_dssp             ------------------GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             ------------------HHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEE
Confidence                              0134689999999977777667778888888766 888 8888

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.57  E-value=4.7e-16  Score=116.73  Aligned_cols=107  Identities=14%  Similarity=0.229  Sum_probs=70.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC-eEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS-LKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~-i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~   79 (193)
                      |++.+|+.++|+||||||||||++++++.+.|++|. +.+                 +...     ........    ..
T Consensus        33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-----------------~~~~-----~~~~~~~~----~~   86 (180)
T 3ec2_A           33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-----------------FDTK-----DLIFRLKH----LM   86 (180)
T ss_dssp             CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-----------------EEHH-----HHHHHHHH----HH
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-----------------EEHH-----HHHHHHHH----Hh
Confidence            456789999999999999999999999999876663 211                 1000     00000000    00


Q ss_pred             CCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-C-CccccccchHHHHHHHHhC-CCcEEEEecCCCCCCCh
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-G-KMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDI  153 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~-~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~  153 (193)
                        .. ..   ....++.        +.+|++|++||| . ++|+..+..+..++....+ |+++|++      ||..
T Consensus        87 --~~-~~---~~~~~~~--------~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t------sn~~  143 (180)
T 3ec2_A           87 --DE-GK---DTKFLKT--------VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT------TNYS  143 (180)
T ss_dssp             --HH-TC---CSHHHHH--------HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE------CCCC
T ss_pred             --cC-ch---HHHHHHH--------hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE------cCCC
Confidence              00 00   0011111        247999999999 4 8999888888888887764 9999999      7754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.57  E-value=2.5e-15  Score=118.35  Aligned_cols=49  Identities=20%  Similarity=0.173  Sum_probs=38.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL   61 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~   61 (193)
                      |++++|++++|+||||||||||+++|+|++    |.+.++        ..++.++|++|+.
T Consensus        20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~--------~~~~~i~~v~~d~   68 (245)
T 2jeo_A           20 FQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE--------QRQRKVVILSQDR   68 (245)
T ss_dssp             ---CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC--------GGGCSEEEEEGGG
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc--------ccCCceEEEeCCc
Confidence            678999999999999999999999999986    666554        1245688998874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.57  E-value=1.9e-15  Score=125.63  Aligned_cols=124  Identities=10%  Similarity=0.094  Sum_probs=78.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEE-eecCCcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEV-VTLDDRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~-q~~~~~~~~~~~~~~~~~~~~   79 (193)
                      |++++|++++|+||||||||||+++|+|+++|++|.|.++|..-......+..++|++ |+.....            . 
T Consensus       170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~------------~-  236 (361)
T 2gza_A          170 RAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEE------------N-  236 (361)
T ss_dssp             HHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC---------------------
T ss_pred             HHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccccc------------c-
Confidence            3578999999999999999999999999999999999998853211222345678877 5321000            0 


Q ss_pred             CCCcccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHH
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~  158 (193)
                        ..    ....+.+..      .+..+|+.+++||+.+      ....++++.+.. ..+++.+      +|... +..
T Consensus       237 --~~----~t~~~~i~~------~l~~~pd~~l~~e~r~------~~~~~~l~~l~~g~~~~l~t------~H~~~-~~~  291 (361)
T 2gza_A          237 --AP----VTAATLLRS------CLRMKPTRILLAELRG------GEAYDFINVAASGHGGSITS------CHAGS-CEL  291 (361)
T ss_dssp             --------CCHHHHHHH------HTTSCCSEEEESCCCS------THHHHHHHHHHTTCCSCEEE------EECSS-HHH
T ss_pred             --cc----cCHHHHHHH------HHhcCCCEEEEcCchH------HHHHHHHHHHhcCCCeEEEE------ECCCC-HHH
Confidence              00    001111111      1346899999999854      235567777766 4578888      56633 445


Q ss_pred             HhcC
Q 029421          159 LRNH  162 (193)
Q Consensus       159 ~~d~  162 (193)
                      .++|
T Consensus       292 ~~~R  295 (361)
T 2gza_A          292 TFER  295 (361)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5555

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.53  E-value=1e-15  Score=132.97  Aligned_cols=140  Identities=14%  Similarity=0.084  Sum_probs=83.0

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC--eEEeceEch-hhccCCceeeEEEeecCCcccccccccCCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS--LKVQGFYTG-EIRQGGQRVGFEVVTLDDRRAPLASINASSPES   78 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~--i~~~g~~~~-~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~   78 (193)
                      .+.+|++++|+||||||||||+++++|..+++ |.  +++.+++.. ........+++..+.       +.  .......
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~-------~~--~~g~~~~  346 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSWGMDFEE-------ME--RQNLLKI  346 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTTSCCHHH-------HH--HTTSEEE
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCCHHH-------HH--hCCCEEE
Confidence            47899999999999999999999999999885 64  344443321 110000011110000       00  0000000


Q ss_pred             CCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCcccc-----ccchHHHHHHHHhC-CCcEEEEecCCCCCC
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELF-----SSSFFPAVLRILES-NIPVLASIPAPKSGR  151 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~-----~~~~~~~ll~~l~~-g~tvl~~~~~~~~tH  151 (193)
                      ..... .  ...-....++.+. ..+..+|+++++| | ++||..     .+..+.++++.+++ |+|||++      +|
T Consensus       347 ~~~~p-~--~LS~g~~q~~~~a-~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv------sh  415 (525)
T 1tf7_A          347 VCAYP-E--SAGLEDHLQIIKS-EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT------NT  415 (525)
T ss_dssp             CCCCG-G--GSCHHHHHHHHHH-HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE------EE
T ss_pred             EEecc-c--cCCHHHHHHHHHH-HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE------EC
Confidence            00000 0  0000011111111 1256899999999 9 699999     88888999998876 9999999      88


Q ss_pred             Ch----------hHHHHHhcC
Q 029421          152 DI----------PAVARLRNH  162 (193)
Q Consensus       152 d~----------~~~~~~~d~  162 (193)
                      +.          ..+..+||+
T Consensus       416 ~~~~~~~~~~~~~~l~~~~D~  436 (525)
T 1tf7_A          416 SDQFMGAHSITDSHISTITDT  436 (525)
T ss_dssp             CSSSSCCCSSCSSCCTTTCSE
T ss_pred             cccccCcccccCcccceeeeE
Confidence            87          556677776

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.53  E-value=6.1e-16  Score=128.13  Aligned_cols=137  Identities=15%  Similarity=0.087  Sum_probs=77.8

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhc--ccCC----CC-eEEeceEchhhccCCceeeEEEeecCC-cccccccccC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESL--KASN----PS-LKVQGFYTGEIRQGGQRVGFEVVTLDD-RRAPLASINA   73 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~--~~~~----G~-i~~~g~~~~~~~~~~~~ig~~~q~~~~-~~~~~~~~~~   73 (193)
                      .+++|++++|+||||||||||++.+++..  +|++    |. +++++....    ..+++++++|.+.. ..+..+++.+
T Consensus       127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----~~~~i~~i~q~~~~~~~~v~~ni~~  202 (349)
T 1pzn_A          127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----RPERIREIAQNRGLDPDEVLKHIYV  202 (349)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----CHHHHHHHHHTTTCCHHHHGGGEEE
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----CHHHHHHHHHHcCCCHHHHhhCEEE
Confidence            57899999999999999999999999998  6766    57 888876541    12446666664411 1122333222


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhc--ccccc-cCCCCCEEEEecC-CCccccc------------cchHHHHHHHH-hC
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIA--LPELQ-VGADTDLFVIDEV-GKMELFS------------SSFFPAVLRIL-ES  136 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~--l~~~~-l~~~p~llllDEp-~~LD~~~------------~~~~~~ll~~l-~~  136 (193)
                      ...    +....    ..+.++.+.  +..++ =..+|+++|+||| +.+|+..            ...+...+..+ ++
T Consensus       203 ~~~----~~~~~----~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~  274 (349)
T 1pzn_A          203 ARA----FNSNH----QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL  274 (349)
T ss_dssp             EEC----CSHHH----HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Eec----CChHH----HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            100    00000    001111110  00000 0168999999999 5888753            12233333333 34


Q ss_pred             -CCcEEEEecCCCCCCChhHH
Q 029421          137 -NIPVLASIPAPKSGRDIPAV  156 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~  156 (193)
                       |+|||++      +|.....
T Consensus       275 ~~~tvii~------~h~~~~~  289 (349)
T 1pzn_A          275 YDIAVFVT------NQVQARP  289 (349)
T ss_dssp             TTCEEEEE------EECC---
T ss_pred             cCcEEEEE------ccccccc
Confidence             8999999      7765543

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.52  E-value=2.7e-16  Score=130.15  Aligned_cols=145  Identities=18%  Similarity=0.192  Sum_probs=85.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---------cCCceeeEEEeecCCcccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---------QGGQRVGFEVVTLDDRRAPLASI   71 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---------~~~~~ig~~~q~~~~~~~~~~~~   71 (193)
                      |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|+...+..         ...+.+.+++|...+.   ..+.
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~---~~r~  142 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPA---LERM  142 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCH---HHHH
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCH---HHHH
Confidence            678999999999999999999999999999999999999887632211         1123456666532111   1110


Q ss_pred             cCC-----CCCCCCCCcccceeeehhhhhhh--ccccccc-CCCCCEEEEecCCCccccccchHHHHHHHHh--C-CC--
Q 029421           72 NAS-----SPESYRWPTVGRYKVDVASFEAI--ALPELQV-GADTDLFVIDEVGKMELFSSSFFPAVLRILE--S-NI--  138 (193)
Q Consensus        72 ~~~-----~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~l-~~~p~llllDEp~~LD~~~~~~~~~ll~~l~--~-g~--  138 (193)
                      ...     ...... ..........+...++  +...+++ +.+|++     -.|+|+..+..+.++++.+.  + |.  
T Consensus       143 ~~~~~~~~~ae~~~-~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~-----t~Gldp~~~~~l~~ller~~~~~~GsiT  216 (347)
T 2obl_A          143 KAAFTATTIAEYFR-DQGKNVLLMMDSVTRYARAARDVGLASGEPDV-----RGGFPPSVFSSLPKLLERAGPAPKGSIT  216 (347)
T ss_dssp             HHHHHHHHHHHHHH-TTTCEEEEEEETHHHHHHHHHHHHHHTTCCCC-----BTTBCHHHHHHHHHHHTTCEECSSSEEE
T ss_pred             HHHHHHHHHHHHHH-hccccHHHHHhhHHHHHHHHHHHHHHcCCCCc-----ccCCCHHHHHHHHHHHHHHhCCCCCCee
Confidence            000     000000 0000000000101110  1111111 234433     14999999999999998875  4 76  


Q ss_pred             ---cEEEEecCCCCCCChhHHHHHhcC
Q 029421          139 ---PVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       139 ---tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                         ||+++      |||++  ..+||+
T Consensus       217 ~~~tVl~~------thdl~--~~i~d~  235 (347)
T 2obl_A          217 AIYTVLLE------SDNVN--DPIGDE  235 (347)
T ss_dssp             EEEEEECC------SSCCC--CHHHHH
T ss_pred             eEEEEEEe------CCCCC--Chhhhh
Confidence               88888      99987  567887

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.52  E-value=1.6e-15  Score=124.55  Aligned_cols=42  Identities=26%  Similarity=0.199  Sum_probs=39.7

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG   45 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~   45 (193)
                      ++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF  168 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence            579999999999999999999999999999999999998863

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.51  E-value=1.2e-16  Score=132.93  Aligned_cols=147  Identities=11%  Similarity=0.037  Sum_probs=82.7

Q ss_pred             CcccC--CCEEEEEcCCCCcHHHHHHHHHhhcccCC----CCeEEec----eEch-hhccCCceeeEEEeecCC-ccccc
Q 029421            1 MAAGA--GKCFLVTGPPGVGKTTLIMRVLESLKASN----PSLKVQG----FYTG-EIRQGGQRVGFEVVTLDD-RRAPL   68 (193)
Q Consensus         1 l~i~~--Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~----G~i~~~g----~~~~-~~~~~~~~ig~~~q~~~~-~~~~~   68 (193)
                      ++|.+  |+.++|+||||||||||+++|+|+++|++    |++.+++    .+.. ..... .++++++|.+.. ..+..
T Consensus       163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~~~t~~  241 (365)
T 1lw7_A          163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDYAVRHS  241 (365)
T ss_dssp             TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHHHHhcc
Confidence            46778  99999999999999999999999999999    9888743    2221 01111 346666654310 01112


Q ss_pred             ccccCCCCCCCCCCcccceeeehhhhhhhc----ccccccCCCCCEEEEec---C-------CCccccccchHHHHHHHH
Q 029421           69 ASINASSPESYRWPTVGRYKVDVASFEAIA----LPELQVGADTDLFVIDE---V-------GKMELFSSSFFPAVLRIL  134 (193)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----l~~~~l~~~p~llllDE---p-------~~LD~~~~~~~~~ll~~l  134 (193)
                      +++.+..     ......  ..........    +.......+|++++|||   |       .++|+..+..+...+..+
T Consensus       242 ~nl~~~~-----~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l  314 (365)
T 1lw7_A          242 HKIAFID-----TDFITT--QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL  314 (365)
T ss_dssp             SSEEEES-----SCHHHH--HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred             CCEEEEe-----CCchHH--HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence            2221100     000000  0000000000    00111235899999999   5       267888887777777665


Q ss_pred             -hC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          135 -ES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       135 -~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                       ++ |.+|+++      +|. ...+++++.
T Consensus       315 ~~~~~~~ilil------de~-~~~~r~~~~  337 (365)
T 1lw7_A          315 LDKYKVPYIEI------ESP-SYLDRYNQV  337 (365)
T ss_dssp             HHGGGCCCEEE------ECS-SHHHHHHHH
T ss_pred             HHHcCCCEEEe------CCC-CHHHHHHHH
Confidence             44 8999999      764 355556654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.50  E-value=1.6e-15  Score=118.36  Aligned_cols=41  Identities=15%  Similarity=0.092  Sum_probs=35.2

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHh--hccc-----CCCCeEEeceE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLE--SLKA-----SNPSLKVQGFY   43 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~g--l~~~-----~~G~i~~~g~~   43 (193)
                      +++|++++|+||||||||||++.+++  ..+|     ..|.+++++..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            67899999999999999999999999  4555     56778888765

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.48  E-value=1.4e-14  Score=116.15  Aligned_cols=137  Identities=13%  Similarity=0.103  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCc-c-cccccccCCCC----
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDR-R-APLASINASSP----   76 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~-~-~~~~~~~~~~~----   76 (193)
                      +.+|++++|+||||||||||++.+++.+.  .|.+. .|....    ....+.|+..+.... . ...........    
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~----~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~   99 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL----PTGPVIYLPAEDPPTAIHHRLHALGAHLSAEER   99 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC----CCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC----CCccEEEEECCCCHHHHHHHHHHHHhhcChhhh
Confidence            57899999999999999999999999765  45553 243221    122344543321100 0 00000000000    


Q ss_pred             ----CCCCC-Cccc--ceeeehhhhhhhcccccccCCCCCEEEEecC-C--Ccccccc---chHHHHHHHHh-C-CCcEE
Q 029421           77 ----ESYRW-PTVG--RYKVDVASFEAIALPELQVGADTDLFVIDEV-G--KMELFSS---SFFPAVLRILE-S-NIPVL  141 (193)
Q Consensus        77 ----~~~~~-~~~~--~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~--~LD~~~~---~~~~~ll~~l~-~-g~tvl  141 (193)
                          ..... ....  ........++.+    ..++.+|+++++||| +  ++|+...   ..+...++.+. + |+|||
T Consensus       100 ~~~~~~l~l~~~~~~~~~~ls~g~~~~i----~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi  175 (279)
T 1nlf_A          100 QAVADGLLIQPLIGSLPNIMAPEWFDGL----KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV  175 (279)
T ss_dssp             HHHHHHEEECCCTTSCCCTTSHHHHHHH----HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             hhccCceEEeecCCCCcccCCHHHHHHH----HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence                00000 0000  000000001111    124568999999999 5  7887654   45566666653 5 99999


Q ss_pred             EEecCCCCCCChhHH
Q 029421          142 ASIPAPKSGRDIPAV  156 (193)
Q Consensus       142 ~~~~~~~~tHd~~~~  156 (193)
                      ++      +|+....
T Consensus       176 ~i------~H~~~~~  184 (279)
T 1nlf_A          176 FL------HHASKGA  184 (279)
T ss_dssp             EE------EEC----
T ss_pred             EE------ecCCCcc
Confidence            99      7766543

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.48  E-value=1.2e-14  Score=124.52  Aligned_cols=61  Identities=20%  Similarity=0.157  Sum_probs=50.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------cc--CCceeeEEEeec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQ--GGQRVGFEVVTL   61 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~--~~~~ig~~~q~~   61 (193)
                      |++.+|++++|+|+||||||||+++|+|++++++|+|.+.|.+....      ..  .+++++|++|..
T Consensus       288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~  356 (503)
T 2yhs_A          288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT  356 (503)
T ss_dssp             CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred             eeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc
Confidence            46789999999999999999999999999999999999987765321      11  245689999865

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.45  E-value=8.9e-14  Score=114.56  Aligned_cols=52  Identities=12%  Similarity=0.163  Sum_probs=45.2

Q ss_pred             cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ++.+|+++||||| ++||+..+..+.++++.+.. |.+||++      |||. .+..+||+
T Consensus       269 l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~------sH~~-~~~~~~d~  322 (339)
T 3qkt_A          269 LAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV------SHDE-ELKDAADH  322 (339)
T ss_dssp             TTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEE------ESCG-GGGGGCSE
T ss_pred             hcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE------EChH-HHHHhCCE
Confidence            5679999999999 69999999999999988765 8899999      9995 46678887

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.43  E-value=6.7e-14  Score=113.64  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=56.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh-cccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCCCCCCccc
Q 029421            9 FLVTGPPGVGKTTLIMRVLES-LKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPESYRWPTVG   85 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl-~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~   85 (193)
                      ++|+||||||||||+++|+|. +.|++| +.++|.+..... ....+++++|...  ..++.+++..+....  .  ...
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~-~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~--~--~~e   94 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV-QIEASTVEIEERGVKLRLTVVDTPGYGDAI--N--CRD   94 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEEEEC--------------
T ss_pred             EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc-eEeeEEEEecCCCcccCcchhhhhhhhhhc--C--cHH
Confidence            599999999999999999998 889999 888887653221 1345678777532  123334432221100  0  000


Q ss_pred             ceeeeh--------hhhhhhcccccccCCCCC---EEEEecC-C-CccccccchHHHHHHHHhC--CCcEEEEecCCCCC
Q 029421           86 RYKVDV--------ASFEAIALPELQVGADTD---LFVIDEV-G-KMELFSSSFFPAVLRILES--NIPVLASIPAPKSG  150 (193)
Q Consensus        86 ~~~~~~--------~~l~~~~l~~~~l~~~p~---llllDEp-~-~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~t  150 (193)
                      ......        ..+..+.-.....+..++   ++++||| + +||+...    ++++.+..  +.++|++      +
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~------K  164 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIA------K  164 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEEC------C
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEE------e
Confidence            000000        111111000001233444   9999999 5 5998762    55666554  6677777      8


Q ss_pred             CChh
Q 029421          151 RDIP  154 (193)
Q Consensus       151 Hd~~  154 (193)
                      ||+.
T Consensus       165 ~Dl~  168 (301)
T 2qnr_A          165 ADTL  168 (301)
T ss_dssp             GGGS
T ss_pred             CCCC
Confidence            8873

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.37  E-value=1.4e-13  Score=105.68  Aligned_cols=38  Identities=26%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF   42 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~   42 (193)
                      +++|++++|+||||||||||++.+++  ++..+.++++..
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~   54 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE   54 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence            78999999999999999999999999  443344455443

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.37  E-value=2.5e-15  Score=118.30  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH---hhcccCCCCeEEece
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVL---ESLKASNPSLKVQGF   42 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~---gl~~~~~G~i~~~g~   42 (193)
                      .+++++|+||||||||||+++|+   |+..|+.|++.++|.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~   66 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI   66 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence            46899999999999999999999   999999999887764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.35  E-value=3.6e-13  Score=109.23  Aligned_cols=60  Identities=27%  Similarity=0.222  Sum_probs=40.4

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE---eceEchhhcc--CCceeeEEEeec
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV---QGFYTGEIRQ--GGQRVGFEVVTL   61 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~---~g~~~~~~~~--~~~~ig~~~q~~   61 (193)
                      ++..|++++|+||||||||||+++|+|+.+|++|+|.+   +|+++.....  ..+.+||++|++
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p  229 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTP  229 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSC
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECc
Confidence            45679999999999999999999999999999999999   8887643221  123589999986

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.33  E-value=1.2e-14  Score=109.73  Aligned_cols=36  Identities=33%  Similarity=0.532  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      |++++|+||||||||||+++|++   +.+|.+.++|.+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~   37 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII   37 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence            78999999999999999999997   5678899988654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.32  E-value=1.3e-13  Score=115.91  Aligned_cols=125  Identities=18%  Similarity=0.164  Sum_probs=67.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHH--HhhcccCCC-----CeEEeceEch---hhccCCceeeEEEeecCCccccccccc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRV--LESLKASNP-----SLKVQGFYTG---EIRQGGQRVGFEVVTLDDRRAPLASIN   72 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i--~gl~~~~~G-----~i~~~g~~~~---~~~~~~~~ig~~~q~~~~~~~~~~~~~   72 (193)
                      |++|++++|+||||||||||++.+  .+..+++.|     .+++++....   ......+++|+.++.      .++++.
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~------vleni~  248 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDD------ALNNVA  248 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH------HHHTEE
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHh------HhhcEE
Confidence            678999999999999999999944  566766544     6788876531   112223345554331      112211


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccccCCCCCEEEEecC-CCcccccc------------chHHHHHHHHh-C-C
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQVGADTDLFVIDEV-GKMELFSS------------SFFPAVLRILE-S-N  137 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp-~~LD~~~~------------~~~~~ll~~l~-~-g  137 (193)
                      +...     .....   ..+.+....  ...-..+|+++++||| +.++....            ..+...++.+. + |
T Consensus       249 ~~~~-----~~~~~---~~~~l~~~~--~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g  318 (400)
T 3lda_A          249 YARA-----YNADH---QLRLLDAAA--QMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFG  318 (400)
T ss_dssp             EEEC-----CSHHH---HHHHHHHHH--HHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             Eecc-----CChHH---HHHHHHHHH--HHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC
Confidence            1000     00000   001111100  0001247999999999 46665432            23445555554 4 9


Q ss_pred             CcEEEE
Q 029421          138 IPVLAS  143 (193)
Q Consensus       138 ~tvl~~  143 (193)
                      +|||++
T Consensus       319 itVIlv  324 (400)
T 3lda_A          319 VAVVVT  324 (400)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            999999

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.32  E-value=2.4e-13  Score=114.83  Aligned_cols=135  Identities=13%  Similarity=0.168  Sum_probs=72.6

Q ss_pred             CcccCCCE--EEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh--hccCCceeeEEEeecC--CcccccccccCC
Q 029421            1 MAAGAGKC--FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE--IRQGGQRVGFEVVTLD--DRRAPLASINAS   74 (193)
Q Consensus         1 l~i~~Ge~--~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~--~~~~~~~ig~~~q~~~--~~~~~~~~~~~~   74 (193)
                      |++++|++  ++|+||||||||||+++|+|+.        ++|.+...  .....+.++|++|+..  +..++.++..+.
T Consensus        35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g  106 (427)
T 2qag_B           35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG  106 (427)
T ss_dssp             HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred             eEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence            47899999  9999999999999999999983        33333211  1112346889998752  234455554433


Q ss_pred             CCCCC--CCCcccc--eeeehhhhhhh---------------------------ccccc------ccCCCCCEEEEecC-
Q 029421           75 SPESY--RWPTVGR--YKVDVASFEAI---------------------------ALPEL------QVGADTDLFVIDEV-  116 (193)
Q Consensus        75 ~~~~~--~~~~~~~--~~~~~~~l~~~---------------------------~l~~~------~l~~~p~llllDEp-  116 (193)
                      .....  .|.....  .....+.+...                           ++...      .|..+++++++|+| 
T Consensus       107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~Kt  186 (427)
T 2qag_B          107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKA  186 (427)
T ss_dssp             C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCG
T ss_pred             hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcch
Confidence            21000  0000000  00000000000                           01000      14578999999999 


Q ss_pred             CCccccccchHHHHHHH-HhC-CCcEEEE
Q 029421          117 GKMELFSSSFFPAVLRI-LES-NIPVLAS  143 (193)
Q Consensus       117 ~~LD~~~~~~~~~ll~~-l~~-g~tvl~~  143 (193)
                      ..|.+.....+...++. +.. |.+|+.+
T Consensus       187 D~Lt~~E~~~l~~~I~~~L~~~gi~I~~i  215 (427)
T 2qag_B          187 DAISKSELTKFKIKITSELVSNGVQIYQF  215 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHBTTBCCCCCC
T ss_pred             hccchHHHHHHHHHHHHHHHHcCCcEEec
Confidence            48877666556655654 776 9999887

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.31  E-value=5.5e-13  Score=114.29  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=41.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG   45 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~   45 (193)
                      |+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus        25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             EECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             EEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            56888 999999999999999999999999999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.31  E-value=1.1e-13  Score=113.17  Aligned_cols=39  Identities=31%  Similarity=0.397  Sum_probs=36.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc--------ccCCCCeEEeceEch
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL--------KASNPSLKVQGFYTG   45 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~--------~~~~G~i~~~g~~~~   45 (193)
                      ++++|+|+||||||||++.|+|..        .|+.|+|.++|..+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence            589999999999999999999997        789999999998764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.30  E-value=1.7e-12  Score=98.68  Aligned_cols=57  Identities=21%  Similarity=0.369  Sum_probs=42.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc--cCCceeeEEEeec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR--QGGQRVGFEVVTL   61 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~--~~~~~ig~~~q~~   61 (193)
                      +++.+|++++|+||||||||||+++|+|+++    .+.+.+.......  .....++|+||++
T Consensus         2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (205)
T 3tr0_A            2 NAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDE   60 (205)
T ss_dssp             ---CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred             CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccH
Confidence            4678999999999999999999999999964    5777776653222  2245678999865

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.29  E-value=1.9e-13  Score=106.70  Aligned_cols=58  Identities=14%  Similarity=0.155  Sum_probs=39.9

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh----------ccCCceeeEEEee
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI----------RQGGQRVGFEVVT   60 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~----------~~~~~~ig~~~q~   60 (193)
                      ++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++...          ...+..++|++|+
T Consensus        24 ~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           24 DLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             CHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            3444 68899999999999999999999999999999999775211          1124678898875

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.29  E-value=9.1e-13  Score=108.54  Aligned_cols=61  Identities=25%  Similarity=0.247  Sum_probs=51.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTL   61 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~   61 (193)
                      |++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....      ..+.++++++|++
T Consensus        50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~  116 (337)
T 2qm8_A           50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR  116 (337)
T ss_dssp             GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT
T ss_pred             cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCc
Confidence            467899999999999999999999999999999999999998874322      2345678877764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.29  E-value=6.8e-13  Score=99.93  Aligned_cols=57  Identities=18%  Similarity=0.215  Sum_probs=43.6

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEee
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVT   60 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~   60 (193)
                      .+++|++++|+||||||||||+++|+|.  ++.|.|.++|.+.......+..++|++|.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~   61 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQS   61 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccch
Confidence            5789999999999999999999999997  67899999987653322223345666553

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.24  E-value=1.4e-13  Score=115.38  Aligned_cols=150  Identities=13%  Similarity=0.077  Sum_probs=85.9

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHh------------hcccCCCCeEEeceEch---hhccCCceee---EEEeecC-
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLE------------SLKASNPSLKVQGFYTG---EIRQGGQRVG---FEVVTLD-   62 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~g------------l~~~~~G~i~~~g~~~~---~~~~~~~~ig---~~~q~~~-   62 (193)
                      ++.+|..++|+|+||||||||+++|+|            .+.|+.|.+.+.|....   ......+.++   ++.+.+. 
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            467899999999999999999999999            56788899988874431   1111223333   2232221 


Q ss_pred             -CcccccccccCCCCCCC-CCCcccceeeehhhhhhhcccccccCCCC--CEEEEecC-CCccccccchHHHHHHHH-hC
Q 029421           63 -DRRAPLASINASSPESY-RWPTVGRYKVDVASFEAIALPELQVGADT--DLFVIDEV-GKMELFSSSFFPAVLRIL-ES  136 (193)
Q Consensus        63 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l-~~  136 (193)
                       ...+..+.+  .. .+. .....+......+.++...+.+..-..+|  ++.++||| .+.|+.........+..+ ..
T Consensus        96 ~~~~s~~e~L--~~-~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~  172 (392)
T 1ni3_A           96 TKGASTGVGL--GN-AFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR  172 (392)
T ss_dssp             CCCCCSSSSS--CH-HHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCCcHHHHH--HH-HHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence             000100000  00 000 00000000011111111111112223489  99999999 699999887777777776 55


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                       |.|+  +      +|+...+..+|++
T Consensus       173 ~g~ti--~------sh~~~~~~~l~~~  191 (392)
T 1ni3_A          173 GANTL--E------MKAKKEEQAIIEK  191 (392)
T ss_dssp             SSCSS--S------HHHHHHHHHHHHH
T ss_pred             cCCcc--c------cccHHHHHHHHHH
Confidence             7775  3      7888888888877

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.24  E-value=3.8e-12  Score=99.16  Aligned_cols=41  Identities=29%  Similarity=0.412  Sum_probs=29.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHH-hhcccCCCCeEEeceE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVL-ESLKASNPSLKVQGFY   43 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~-gl~~~~~G~i~~~g~~   43 (193)
                      +++|++++|+||||||||||+..++ +..+...+.+++++..
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            6789999999999999999966554 4444433444455443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.23  E-value=6.2e-12  Score=106.28  Aligned_cols=125  Identities=11%  Similarity=0.084  Sum_probs=62.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcccCCC--CeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCCCCCCcc
Q 029421            9 FLVTGPPGVGKTTLIMRVLESLKASNP--SLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPESYRWPTV   84 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~~~~~G--~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~   84 (193)
                      ++|+||||||||||+++|+|...++.|  .+.+++..    ......+++++|...  ...+..++..+....    ...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~----t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~----~~~  105 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK----TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV----DNS  105 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC---------CCEEEEEECC------CEEEEEEECC-------------
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc----ceeeeeEEEEEecCCcccceeeeechhhhhhc----cch
Confidence            699999999999999999999876544  22222111    011234677776542  123444443322110    000


Q ss_pred             cceeeeh----hhh-----hhhcccccccCCCCC---EEEEecC-C-CccccccchHHHHHHHHhCCCcEEEEecC
Q 029421           85 GRYKVDV----ASF-----EAIALPELQVGADTD---LFVIDEV-G-KMELFSSSFFPAVLRILESNIPVLASIPA  146 (193)
Q Consensus        85 ~~~~~~~----~~l-----~~~~l~~~~l~~~p~---llllDEp-~-~LD~~~~~~~~~ll~~l~~g~tvl~~~~~  146 (193)
                      .......    +.+     +++++. .+++.+|+   ++++||| + ++|+...    .+++.+..+.++|+|++-
T Consensus       106 ~~~~~i~~~i~~~~~~~l~qr~~Ia-Ral~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK  176 (418)
T 2qag_C          106 NCWQPVIDYIDSKFEDYLNAESRVN-RRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAK  176 (418)
T ss_dssp             --CHHHHHHHHHHHHHHTTTSCC-C-CCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEES
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEc
Confidence            0000000    011     111222 12678999   9999999 3 8987652    455556567888888543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.22  E-value=4.6e-12  Score=102.83  Aligned_cols=59  Identities=20%  Similarity=0.201  Sum_probs=43.1

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE---eceEchhhcc-CC-ceeeEEEeec
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV---QGFYTGEIRQ-GG-QRVGFEVVTL   61 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~---~g~~~~~~~~-~~-~~ig~~~q~~   61 (193)
                      ++.+|++++|+||||||||||+++|+ +++|+.|+|.+   +|++...... .. +.+||++|++
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p  224 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP  224 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence            35679999999999999999999999 99999999999   8887643221 11 2589999987

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.22  E-value=1.4e-12  Score=106.08  Aligned_cols=60  Identities=20%  Similarity=0.161  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE---eceEchhhccCCc-eeeEEEeec
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV---QGFYTGEIRQGGQ-RVGFEVVTL   61 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~---~g~~~~~~~~~~~-~ig~~~q~~   61 (193)
                      ++.+|++++|+||||||||||+++|+|+.+|+.|+|.+   .|+.........+ ..||++|++
T Consensus       169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtp  232 (307)
T 1t9h_A          169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTP  232 (307)
T ss_dssp             GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSC
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCC
Confidence            56789999999999999999999999999999999998   7776532221111 268999876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.13  E-value=1.8e-12  Score=98.69  Aligned_cols=39  Identities=10%  Similarity=0.212  Sum_probs=28.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc-----ccCCCCeEE
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL-----KASNPSLKV   39 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~-----~~~~G~i~~   39 (193)
                      |++.+|..++|+|+||||||||++.|+|..     .|+.|.+.+
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            578899999999999999999999999988     788887765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.13  E-value=1e-10  Score=94.66  Aligned_cols=129  Identities=13%  Similarity=0.084  Sum_probs=71.7

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCC
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWP   82 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~   82 (193)
                      .+|++++++|||||||||+++.|++.+.+++| +|.+.+.+...... ...+.+          .......+...  . .
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a-~eqL~~----------~~~~~gl~~~~--~-~  168 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAA-VEQLKT----------YAELLQAPLEV--C-Y  168 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTH-HHHHHH----------HHTTTTCCCCB--C-S
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchH-HHHHHH----------HHHhcCCCeEe--c-C
Confidence            46899999999999999999999999998778 56554443311000 000000          00000000000  0 0


Q ss_pred             cccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHh---C-CCcEEEEecCCCCCCChhHHHH
Q 029421           83 TVGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILE---S-NIPVLASIPAPKSGRDIPAVAR  158 (193)
Q Consensus        83 ~~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~---~-g~tvl~~~~~~~~tHd~~~~~~  158 (193)
                      .      ..+ + ...+.   .+.+++++|+|.| |+|+.....+.++.+.+.   . +..+++  ..   +|+...+.+
T Consensus       169 ~------~~~-l-~~al~---~~~~~dlvIiDT~-G~~~~~~~~~~el~~~l~~~~~~~~~lVl--~a---t~~~~~~~~  231 (296)
T 2px0_A          169 T------KEE-F-QQAKE---LFSEYDHVFVDTA-GRNFKDPQYIDELKETIPFESSIQSFLVL--SA---TAKYEDMKH  231 (296)
T ss_dssp             S------HHH-H-HHHHH---HGGGSSEEEEECC-CCCTTSHHHHHHHHHHSCCCTTEEEEEEE--ET---TBCHHHHHH
T ss_pred             C------HHH-H-HHHHH---HhcCCCEEEEeCC-CCChhhHHHHHHHHHHHhhcCCCeEEEEE--EC---CCCHHHHHH
Confidence            0      001 1 01111   1368999999944 667665555555555543   2 333444  11   888888888


Q ss_pred             HhcCC
Q 029421          159 LRNHP  163 (193)
Q Consensus       159 ~~d~~  163 (193)
                      ++++.
T Consensus       232 ~~~~~  236 (296)
T 2px0_A          232 IVKRF  236 (296)
T ss_dssp             HTTTT
T ss_pred             HHHHH
Confidence            88874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.12  E-value=3.6e-11  Score=97.74  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=38.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc--cCCCCeEE---eceEc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK--ASNPSLKV---QGFYT   44 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~--~~~G~i~~---~g~~~   44 (193)
                      .+|++++|+||||||||||+++|+|++.  |++|+|.+   +|...
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~  123 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC
Confidence            7899999999999999999999999998  99999999   88664

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.12  E-value=2.6e-11  Score=98.41  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=34.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      |+|++|++++|+||||||||||+++|+|++   +|+|...+
T Consensus       121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v  158 (305)
T 2v9p_A          121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA  158 (305)
T ss_dssp             HTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG
T ss_pred             EEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe
Confidence            478999999999999999999999999999   79986544

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.11  E-value=2.6e-11  Score=94.29  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=22.4

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHH-hhccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVL-ESLKA   32 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~-gl~~~   32 (193)
                      |++++|++++|+||||||||||+++|+ |++++
T Consensus        22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            678999999999999999999999999 99843

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.10  E-value=1.8e-11  Score=93.87  Aligned_cols=41  Identities=27%  Similarity=0.436  Sum_probs=35.5

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYT   44 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~   44 (193)
                      ++|++++|+||||||||||+++|+|+++|+   .|.|.++|+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            679999999999999999999999999864   56777777654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.08  E-value=4.8e-11  Score=90.65  Aligned_cols=35  Identities=34%  Similarity=0.552  Sum_probs=29.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP   35 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G   35 (193)
                      +++.+|++++|+|||||||||++++|++.+.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            57899999999999999999999999999866555

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.07  E-value=5.1e-11  Score=90.78  Aligned_cols=29  Identities=24%  Similarity=0.582  Sum_probs=24.2

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +++|++++|+||||||||||+++|+|+++
T Consensus         1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            35799999999999999999999999986

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.04  E-value=9.3e-11  Score=97.09  Aligned_cols=56  Identities=18%  Similarity=0.166  Sum_probs=37.9

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCeEEe-ceEchhhccCCceeeEEEeec
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK-ASNPSLKVQ-GFYTGEIRQGGQRVGFEVVTL   61 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~-~~~G~i~~~-g~~~~~~~~~~~~ig~~~q~~   61 (193)
                      .+|++++|+||||||||||+++|+|..+ |+.|+|.++ |....  ......+++++|..
T Consensus       213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~--tt~~~~i~~v~q~~  270 (358)
T 2rcn_A          213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH--TTTAARLYHFPHGG  270 (358)
T ss_dssp             HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------CCCEEEECTTSC
T ss_pred             cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc--ceEEEEEEEECCCC
Confidence            3699999999999999999999999999 999999886 65432  12245677777653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.01  E-value=1.9e-10  Score=97.26  Aligned_cols=41  Identities=29%  Similarity=0.349  Sum_probs=38.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      .+|++++|+||||||||||+++|+|+++|++|+|.+.|.++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  205 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence            57899999999999999999999999999999999988765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.01  E-value=1.1e-10  Score=101.07  Aligned_cols=42  Identities=17%  Similarity=0.191  Sum_probs=39.1

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      .+++|++++|+||||||||||+++|+|+++|++|.|.+.|..
T Consensus       256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          256 AIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            467899999999999999999999999999999999998864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.99  E-value=4.1e-11  Score=94.65  Aligned_cols=58  Identities=16%  Similarity=0.166  Sum_probs=46.8

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHH---hhcccCCCCeE--------EeceEchh---hccCCceeeEEEeec
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVL---ESLKASNPSLK--------VQGFYTGE---IRQGGQRVGFEVVTL   61 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~---gl~~~~~G~i~--------~~g~~~~~---~~~~~~~ig~~~q~~   61 (193)
                      .+|++++|+|||||||||++++|+   |+..+++|.+.        .+|.+...   .......+++++|..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence            468999999999999999999999   99999999998        77776521   223346688888754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.97  E-value=3.9e-11  Score=89.66  Aligned_cols=38  Identities=26%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccC---CCCeEEeceEc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKAS---NPSLKVQGFYT   44 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~---~G~i~~~g~~~   44 (193)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.++|.++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i   43 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD   43 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence            589999999999999999999999998   89999999874

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.96  E-value=5.7e-10  Score=90.17  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=37.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      +|++++++|+||+||||+++.|++.+++..|+|.+.+.+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~  136 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence            7899999999999999999999999999999999988765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.94  E-value=3e-10  Score=95.91  Aligned_cols=30  Identities=17%  Similarity=0.181  Sum_probs=27.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      |+++.|+.++|+|+||||||||+++|+|..
T Consensus       152 lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          152 LELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             eEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            467889999999999999999999999884

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.94  E-value=7.4e-10  Score=84.18  Aligned_cols=54  Identities=17%  Similarity=0.121  Sum_probs=39.0

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc-cCCceeeEEEee
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR-QGGQRVGFEVVT   60 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~-~~~~~ig~~~q~   60 (193)
                      .++|++++|+|||||||||++++|++.+    |.+.++|.+..... ......|+++|+
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~   80 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTD   80 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCC
Confidence            4679999999999999999999999987    88999886652111 111234666654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.93  E-value=8.2e-10  Score=82.38  Aligned_cols=59  Identities=14%  Similarity=-0.004  Sum_probs=40.9

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE--c-hhh-----ccCCceeeEEEeec
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY--T-GEI-----RQGGQRVGFEVVTL   61 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~--~-~~~-----~~~~~~ig~~~q~~   61 (193)
                      ++.+| +++|+||||||||||+++|.+++.+..|...-.+..  . ...     +.....+.+++|++
T Consensus        23 ~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~   89 (182)
T 3kta_A           23 PFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE   89 (182)
T ss_dssp             ECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred             ecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence            46677 999999999999999999999998877754322211  1 000     02345677888865

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.91  E-value=4.6e-10  Score=85.31  Aligned_cols=41  Identities=29%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe--EEeceEc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL--KVQGFYT   44 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i--~~~g~~~   44 (193)
                      .++|++++|+|||||||||++++|++.+. ..|.+  +++|.++
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~   64 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV   64 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence            46899999999999999999999999998 67888  8887654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.89  E-value=2e-10  Score=86.53  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhccc-----------CCCCeEEeceEc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKA-----------SNPSLKVQGFYT   44 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~-----------~~G~i~~~g~~~   44 (193)
                      .++|+|+||||||||++.++|...+           +.|+|.++|...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            5899999999999999999998765           457777877653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.87  E-value=1.1e-09  Score=81.89  Aligned_cols=36  Identities=14%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhccc-CCCCeEEe
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKA-SNPSLKVQ   40 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~-~~G~i~~~   40 (193)
                      +|++++|+||||||||||+++|++.+++ ..|.|...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t   40 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT   40 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence            6899999999999999999999999864 45666543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.86  E-value=1.2e-09  Score=83.11  Aligned_cols=42  Identities=21%  Similarity=0.210  Sum_probs=37.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      ..+|++++|+|+||||||||+++|++.+++..|.+.+.+.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            467899999999999999999999999999889988876554

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.83  E-value=8.4e-10  Score=91.21  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=29.9

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      +++|+++.|.||||||||||+..++.......|.+.+
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly   94 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF   94 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            5789999999999999999998888766555555443

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.83  E-value=1.5e-09  Score=84.42  Aligned_cols=39  Identities=18%  Similarity=0.128  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      +.++|++++|.|+|||||||++++|+|.    .|+|.+.+.+.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence            4578999999999999999999999998    68899988764

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.82  E-value=1.2e-09  Score=79.71  Aligned_cols=52  Identities=12%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             cCCCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ++.+|++++|||| ++||+..+..+.+++..+.+ |.|||++      |||. .+..+||+
T Consensus        78 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiiv------sH~~-~~~~~~d~  131 (148)
T 1f2t_B           78 LAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV------SHDE-ELKDAADH  131 (148)
T ss_dssp             HHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEE------ESCG-GGGGGCSE
T ss_pred             HcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEE------EChH-HHHHhCCE
Confidence            4578999999999 69999999999999998865 8999999      9998 56678887

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.78  E-value=4.3e-09  Score=92.79  Aligned_cols=55  Identities=24%  Similarity=0.239  Sum_probs=41.0

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC-CCeEEeceEchhhccCCceeeEEEe
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN-PSLKVQGFYTGEIRQGGQRVGFEVV   59 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~-G~i~~~g~~~~~~~~~~~~ig~~~q   59 (193)
                      .+.+|+.++|+||||+|||||+++|++++++.. |.+.+++....   .....++++|+
T Consensus        56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~---~~~p~i~~~p~  111 (604)
T 3k1j_A           56 AANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED---ENMPRIKTVPA  111 (604)
T ss_dssp             HHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC---TTSCEEEEEET
T ss_pred             cccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc---ccCCcEEEEec
Confidence            467899999999999999999999999998877 66666654332   12334555543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.75  E-value=6.4e-09  Score=84.44  Aligned_cols=42  Identities=21%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      ..+|++++++|||||||||+++.|++.++++.|+|.+.+.+.
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~  142 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT  142 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence            467899999999999999999999999999989999887765

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.75  E-value=6.8e-09  Score=90.45  Aligned_cols=37  Identities=35%  Similarity=0.609  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      +|++++|+||||+|||||+++|++.+.+..|.+.+.|
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            6899999999999999999999999987777766655

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.74  E-value=4.3e-09  Score=91.76  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=37.6

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeE-EeceEc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLK-VQGFYT   44 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~-~~g~~~   44 (193)
                      .+.+|++++|+|+||||||||+++|++.+.|++| ++. ++|...
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            4678999999999999999999999999999886 685 777544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.73  E-value=8.5e-09  Score=76.31  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      .+|++++|+|||||||||++++|++.+    |.+.+++...
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence            468999999999999999999999975    7888887554

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.73  E-value=3e-08  Score=81.44  Aligned_cols=75  Identities=17%  Similarity=0.295  Sum_probs=44.8

Q ss_pred             CCCEEEEecCCCcc-ccccchHHHHHHHH---hC-CCcEEEEecCCCCCCChhHHH----HHhcCCCcEEEEeCCCChhH
Q 029421          107 DTDLFVIDEVGKME-LFSSSFFPAVLRIL---ES-NIPVLASIPAPKSGRDIPAVA----RLRNHPGATIFTLSPGNRDS  177 (193)
Q Consensus       107 ~p~llllDEp~~LD-~~~~~~~~~ll~~l---~~-g~tvl~~~~~~~~tHd~~~~~----~~~d~~~~~~~~~~~~~~~~  177 (193)
                      .|.++++||+..+. ......+..+++.+   .. +.++|++      +|+.....    .+..+.....+.+.+.+.++
T Consensus       128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~------~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~  201 (386)
T 2qby_A          128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI------TNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEE  201 (386)
T ss_dssp             SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE------ESCGGGGGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred             CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE------ECCCChHhhhCHHHhccCCCeeEEeCCCCHHH
Confidence            48899999995433 32345566666666   33 6788888      77664322    23334444566777777766


Q ss_pred             HHHHHHHHHH
Q 029421          178 LKDNIYYQLT  187 (193)
Q Consensus       178 l~~~~~~~~~  187 (193)
                      +.+-+...+.
T Consensus       202 ~~~il~~~~~  211 (386)
T 2qby_A          202 LEDILTKRAQ  211 (386)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6655554443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.72  E-value=1.3e-08  Score=83.93  Aligned_cols=29  Identities=28%  Similarity=0.400  Sum_probs=25.7

Q ss_pred             CCC--EEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            5 AGK--CFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         5 ~Ge--~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      .+.  .+.|.||+|+|||||++.+++.+.+.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            346  89999999999999999999988765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.69  E-value=1e-08  Score=78.47  Aligned_cols=29  Identities=31%  Similarity=0.540  Sum_probs=27.2

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      ++|++++|+||||||||||++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            47999999999999999999999999876

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.69  E-value=6.4e-09  Score=86.05  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=35.0

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe-EEeceE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL-KVQGFY   43 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i-~~~g~~   43 (193)
                      +++|+++.|.||||||||||+..++....+..|.+ ++++..
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            57899999999999999999999999988877776 555543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.69  E-value=1.1e-08  Score=77.85  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=26.5

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ..+|++++|+||||||||||++.|++.++
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34799999999999999999999999875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.68  E-value=7.5e-09  Score=82.66  Aligned_cols=55  Identities=27%  Similarity=0.326  Sum_probs=39.5

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEee
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVT   60 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~   60 (193)
                      ++++|  ++|+||||||||||+++|+|.+.+  |.+.++|.++...  ....+.++++||.
T Consensus        42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~   98 (274)
T 2x8a_A           42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQR   98 (274)
T ss_dssp             CCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred             CCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence            45566  999999999999999999999876  6788888654211  1112345566654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.66  E-value=1.2e-07  Score=72.84  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=24.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      .+..+.|.||+|+|||||++.++..+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5778999999999999999999987653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.65  E-value=2.4e-09  Score=87.74  Aligned_cols=54  Identities=28%  Similarity=0.316  Sum_probs=41.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc----ccCCCCeEEeceEchhh--ccCCceeeEEEee
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL----KASNPSLKVQGFYTGEI--RQGGQRVGFEVVT   60 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~----~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~   60 (193)
                      ++++|+||||+|||||+++|+|.+    .+++|.+..++.++...  ......++|+++.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~  111 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI  111 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence            789999999999999999999998    77888887766554321  1224567888764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.65  E-value=1.8e-08  Score=82.24  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=39.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      |++.+|++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus       100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A          100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            34678999999999999999999999999999999999988775

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.62  E-value=2.3e-08  Score=81.66  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc--cCCCCeEEe
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK--ASNPSLKVQ   40 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~--~~~G~i~~~   40 (193)
                      ++||+||||||||||+++|++++.  |++|.+.+-
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i  128 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI  128 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence            899999999999999999999987  567775543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.61  E-value=4.2e-09  Score=81.05  Aligned_cols=57  Identities=18%  Similarity=0.247  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc---ccCCCCeEE--------eceEch---hhccCCceeeEEEeec
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL---KASNPSLKV--------QGFYTG---EIRQGGQRVGFEVVTL   61 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~---~~~~G~i~~--------~g~~~~---~~~~~~~~ig~~~q~~   61 (193)
                      .+.+++|+|||||||||+.++|++.+   .++.|.+..        .|.++.   ......+.+++++|..
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            35789999999999999999999887   677777765        454332   1112234577777754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.59  E-value=9.5e-08  Score=78.16  Aligned_cols=33  Identities=36%  Similarity=0.625  Sum_probs=28.1

Q ss_pred             ccCCCE--EEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421            3 AGAGKC--FLVTGPPGVGKTTLIMRVLESLKASNP   35 (193)
Q Consensus         3 i~~Ge~--~~l~GpnGsGKSTLl~~i~gl~~~~~G   35 (193)
                      +..|++  +.+.||+|+||||+++++++.+.+..+
T Consensus        41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   75 (340)
T 1sxj_C           41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY   75 (340)
T ss_dssp             HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred             HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence            456777  999999999999999999999866543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.57  E-value=3.3e-08  Score=72.79  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=28.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      .|++++|+|||||||||++++|++.+.    ...+++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~----~~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN----MEFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT----CEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC----CCEEec
Confidence            578999999999999999999999864    355654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.55  E-value=3.5e-08  Score=83.45  Aligned_cols=50  Identities=14%  Similarity=0.254  Sum_probs=42.9

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .+|+++||||| ++||+..+..+.++++.+.. |.++|++      ||+.. ....||+
T Consensus       354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~------th~~~-~~~~~d~  405 (430)
T 1w1w_A          354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVI------SLKNT-MFEKSDA  405 (430)
T ss_dssp             SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEE------CSCHH-HHTTCSE
T ss_pred             CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEE------ECCHH-HHHhCCE
Confidence            58999999999 79999999999999988765 8899999      99954 4556776

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.55  E-value=7.4e-08  Score=81.59  Aligned_cols=40  Identities=18%  Similarity=0.102  Sum_probs=35.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      ++.+++++|||||||||++..|++.+.+..+++.+-+-+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            4789999999999999999999999999888887766554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.53  E-value=5.7e-08  Score=76.17  Aligned_cols=37  Identities=38%  Similarity=0.600  Sum_probs=30.2

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF   42 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~   42 (193)
                      ++++|  ++|+||||||||||+++|++...  .|.+.++|.
T Consensus        47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~   83 (254)
T 1ixz_A           47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS   83 (254)
T ss_dssp             CCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred             CCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence            45566  89999999999999999999875  566666654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.53  E-value=1.1e-07  Score=80.76  Aligned_cols=73  Identities=15%  Similarity=0.128  Sum_probs=42.7

Q ss_pred             CCCEEEEecCCCccc--cccchHHHHHHHHhC-CCcEEEEecCCCCCCChhH-----HHHHhcCC-CcEEEEeCCCChhH
Q 029421          107 DTDLFVIDEVGKMEL--FSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPA-----VARLRNHP-GATIFTLSPGNRDS  177 (193)
Q Consensus       107 ~p~llllDEp~~LD~--~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~-----~~~~~d~~-~~~~~~~~~~~~~~  177 (193)
                      ++++|++||+..+..  ..+..+..++..+.+ |+.+|++      ||+...     ..++..|. .+.++.+.+++.++
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIit------t~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~  267 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVIC------SDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET  267 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEE------ESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEE------ECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHH
Confidence            789999999943332  445667777777665 8899998      655211     12233332 13344566666655


Q ss_pred             HHHHHHHH
Q 029421          178 LKDNIYYQ  185 (193)
Q Consensus       178 l~~~~~~~  185 (193)
                      ..+-+...
T Consensus       268 r~~iL~~~  275 (440)
T 2z4s_A          268 RKSIARKM  275 (440)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444433

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.53  E-value=5.6e-08  Score=80.19  Aligned_cols=41  Identities=27%  Similarity=0.329  Sum_probs=36.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEch
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG   45 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~   45 (193)
                      ++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.++.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            37899999999999999999999999999999999887653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.52  E-value=4.6e-08  Score=83.37  Aligned_cols=40  Identities=15%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEece
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGF   42 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~   42 (193)
                      +.+|+++.|.|++|+|||||+..+++...+..| .+.+.+.
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            679999999999999999999999998876545 5665543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.52  E-value=5.5e-08  Score=72.25  Aligned_cols=38  Identities=32%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC--CeEEece
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNP--SLKVQGF   42 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G--~i~~~g~   42 (193)
                      .+|++++|+|++||||||+.+.|++.+++ .|  .+.+++.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~   42 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD   42 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence            46899999999999999999999999877 46  4455553

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.52  E-value=2.7e-08  Score=88.61  Aligned_cols=43  Identities=26%  Similarity=0.252  Sum_probs=34.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceEc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFYT   44 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~~   44 (193)
                      +++++|..++|+|++|+|||||++.|++...+  ..|+| .+|...
T Consensus         4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~   48 (665)
T 2dy1_A            4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT   48 (665)
T ss_dssp             --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred             CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence            35678999999999999999999999988664  67887 555443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.51  E-value=7.9e-08  Score=79.62  Aligned_cols=45  Identities=2%  Similarity=0.150  Sum_probs=37.1

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .+|+++||||| ++||+..+..+.+++..+.  .|+|++      ||. +.   .|++
T Consensus       291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~------th~-~~---~~~~  336 (359)
T 2o5v_A          291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTG------TEL-AP---GAAL  336 (359)
T ss_dssp             SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEE------SSC-CT---TCSE
T ss_pred             CCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEE------Eec-cc---cCCE
Confidence            79999999999 6999999988888887764  688888      884 33   5665

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.50  E-value=7.4e-08  Score=76.63  Aligned_cols=38  Identities=37%  Similarity=0.559  Sum_probs=30.8

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      ++++|  ++|+||||||||||+++|++.+.  .|.+.+++.+
T Consensus        71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~  108 (278)
T 1iy2_A           71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD  108 (278)
T ss_dssp             CCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred             CCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHH
Confidence            45566  89999999999999999999875  5667666543

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.47  E-value=1e-07  Score=82.28  Aligned_cols=43  Identities=16%  Similarity=0.165  Sum_probs=35.9

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHh--hcccCCCCeEEeceEc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLE--SLKASNPSLKVQGFYT   44 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~g--l~~~~~G~i~~~g~~~   44 (193)
                      ++.++.+++|.|++||||||+++.|..  +.+++.|++.+.+.+.
T Consensus       163 dL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDp  207 (512)
T 2ius_A          163 DLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDP  207 (512)
T ss_dssp             EGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred             EcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECC
Confidence            567789999999999999999999876  4566778888877664

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.47  E-value=1.2e-07  Score=86.93  Aligned_cols=53  Identities=17%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             cCCCCC--EEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          104 VGADTD--LFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       104 l~~~p~--llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |+.+|+  ++||||| ++||+.....+.++++.+++ |.|||+|      |||++.+. .||++
T Consensus       479 L~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV------tHd~~~~~-~aD~i  535 (916)
T 3pih_A          479 IGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV------EHDEEVIR-NADHI  535 (916)
T ss_dssp             HHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE------CCCHHHHH-TCSEE
T ss_pred             HhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE------eCCHHHHH-hCCEE
Confidence            666666  9999999 69999999999999999987 9999999      99998775 48883

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.46  E-value=6.5e-08  Score=72.89  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc-----cC------CCCeEEeceE
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK-----AS------NPSLKVQGFY   43 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~-----~~------~G~i~~~g~~   43 (193)
                      .++|+|+||||||||++.++|...     |+      .|.+.++|..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~   53 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT   53 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence            489999999999999999999843     33      3456666643

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.46  E-value=9.6e-08  Score=72.30  Aligned_cols=30  Identities=33%  Similarity=0.320  Sum_probs=25.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      |++.+|++++|+|++||||||+.+.|++.+
T Consensus        20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            567899999999999999999999999876

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.43  E-value=5.3e-08  Score=74.39  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCC--CeEEec
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNP--SLKVQG   41 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G--~i~~~g   41 (193)
                      .+.+|.+++|+|++||||||+.+.|++.+.|+.|  .+.+++
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~   62 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG   62 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence            4678999999999999999999999999987777  566654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.43  E-value=1.4e-07  Score=77.58  Aligned_cols=43  Identities=26%  Similarity=0.248  Sum_probs=38.1

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      .+.+|.+++|+|+||+|||||++.|++.+.+..+++.+-+.+.
T Consensus        52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            4678999999999999999999999999999888888876654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.43  E-value=1.2e-07  Score=72.12  Aligned_cols=30  Identities=23%  Similarity=0.240  Sum_probs=27.2

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++.+|.+++|+|++||||||+++.|++.++
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            467899999999999999999999999753

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.41  E-value=2.4e-07  Score=84.92  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=46.4

Q ss_pred             cCCC--CCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGAD--TDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~--p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      |..+  |+++||||| ++||+.....+.++++.+++ |.|||+|      +||++.+. .||+
T Consensus       519 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvV------eHdl~~i~-~ADr  574 (972)
T 2r6f_A          519 IGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV------EHDEDTML-AADY  574 (972)
T ss_dssp             HTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEE------CCCHHHHH-SCSE
T ss_pred             HhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEE------ecCHHHHH-hCCE
Confidence            6666  599999999 59999999999999999987 9999999      99998765 6888

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.40  E-value=1.4e-07  Score=78.67  Aligned_cols=35  Identities=29%  Similarity=0.310  Sum_probs=30.5

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      .+++|++++|+||||||||||+++|+|..   +|.+..
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            57899999999999999999999999974   566544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.40  E-value=7.4e-07  Score=73.54  Aligned_cols=80  Identities=15%  Similarity=0.180  Sum_probs=44.6

Q ss_pred             CCCCCEEEEe-cC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH------HHHHhcCCCcEEEEeCC---C
Q 029421          105 GADTDLFVID-EV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA------VARLRNHPGATIFTLSP---G  173 (193)
Q Consensus       105 ~~~p~llllD-Ep-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~------~~~~~d~~~~~~~~~~~---~  173 (193)
                      ..++-++++| ++ .++|......+...+.....+.++|++.-    =||+..      +.+++...+..++.++.   .
T Consensus       246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~N----K~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~  321 (357)
T 2e87_A          246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVIN----KIDVADEENIKRLEKFVKEKGLNPIKISALKGT  321 (357)
T ss_dssp             TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEEC----CTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTB
T ss_pred             cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEE----CcccCChHHHHHHHHHHHhcCCCeEEEeCCCCc
Confidence            3567789999 77 57887765544444444333788888820    166532      22333333334444442   2


Q ss_pred             ChhHHHHHHHHHHHH
Q 029421          174 NRDSLKDNIYYQLTD  188 (193)
Q Consensus       174 ~~~~l~~~~~~~~~~  188 (193)
                      +.+++.+.+.+.+..
T Consensus       322 gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          322 GIDLVKEEIIKTLRP  336 (357)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            456777777665543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.37  E-value=1.1e-06  Score=66.91  Aligned_cols=26  Identities=31%  Similarity=0.603  Sum_probs=22.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      ..+.|.||+|+|||||++.++..+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            37899999999999999999987654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.36  E-value=3.4e-07  Score=68.33  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      ..+|.+++|+|++||||||+.+.|+..+.+..+.+.+
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~   46 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV   46 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            4679999999999999999999999999887776643

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.35  E-value=6.7e-07  Score=76.63  Aligned_cols=23  Identities=43%  Similarity=0.660  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -+.|+||+|+|||||++++++..
T Consensus        51 gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            38899999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.34  E-value=5.4e-07  Score=73.03  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=24.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      +..+.|.||+|+|||||++.+++.+...
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            4679999999999999999999887554

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.31  E-value=4e-07  Score=68.98  Aligned_cols=30  Identities=27%  Similarity=0.135  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF   42 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~   42 (193)
                      +++|+|||||||||+.++|+++     |...+++-
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d   33 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD   33 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccchH
Confidence            6899999999999999999984     66666553

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.29  E-value=1.9e-07  Score=73.66  Aligned_cols=30  Identities=30%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             CcccC---CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            1 MAAGA---GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         1 l~i~~---Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      |+|.+   |++++|+|++||||||+.++|++.+
T Consensus        40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            35667   9999999999999999999999965

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.28  E-value=8.4e-07  Score=80.70  Aligned_cols=52  Identities=13%  Similarity=0.232  Sum_probs=46.5

Q ss_pred             cCCCC--CEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGADT--DLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      |+.+|  .++||||| ++||+.....+.++++.+++ |.|||+|      +||++.+ ..||+
T Consensus       394 L~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvV------eHdl~~l-~~aD~  449 (842)
T 2vf7_A          394 LYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVV------EHDLDVI-RRADW  449 (842)
T ss_dssp             TTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEE------CCCHHHH-TTCSE
T ss_pred             HhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEE------cCCHHHH-HhCCE
Confidence            77888  59999999 69999999999999999987 9999999      9999865 46887

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.23  E-value=5.1e-07  Score=65.54  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.+|+|||||||||++.+|.-.+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            389999999999999999997544

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.23  E-value=3.5e-07  Score=79.11  Aligned_cols=53  Identities=19%  Similarity=0.070  Sum_probs=46.3

Q ss_pred             cCCCC--CEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          104 VGADT--DLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       104 l~~~p--~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++.+|  ++|||||| +|||+.++..+.++++.+.+|.+||++      ||+++.+. +||++
T Consensus       412 l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~i------tH~~~~~~-~~d~~  467 (517)
T 4ad8_A          412 TVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV------THLAQIAA-RAHHH  467 (517)
T ss_dssp             HHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEE------CCCHHHHH-HSSEE
T ss_pred             HHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEE------ecCHHHHH-hCCEE
Confidence            55788  99999999 699999999999999988778999999      99987664 68873

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.22  E-value=7.6e-07  Score=67.52  Aligned_cols=29  Identities=41%  Similarity=0.598  Sum_probs=26.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ..+|.+++|+|||||||||+.+.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            46799999999999999999999998763

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.22  E-value=5.7e-07  Score=72.37  Aligned_cols=30  Identities=20%  Similarity=0.397  Sum_probs=27.1

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      .++.+++|+||+|||||||++.|++++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            457899999999999999999999998763

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.19  E-value=7.4e-07  Score=71.94  Aligned_cols=39  Identities=21%  Similarity=0.192  Sum_probs=35.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      |.+++++|+||+||||++..|++.+.+..+++.+.+.+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            889999999999999999999999999888998877664

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.19  E-value=1.3e-06  Score=65.08  Aligned_cols=51  Identities=4%  Similarity=0.054  Sum_probs=43.1

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      .+|+++||||| ++||+.++..+.++++.+..+.++|++      ||+.. ...+||++
T Consensus        85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivi------th~~~-~~~~ad~i  136 (173)
T 3kta_B           85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVI------TLRDV-MMANADKI  136 (173)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEE------CSCHH-HHTTCSEE
T ss_pred             CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEE------EecHH-HHHhCCEE
Confidence            46799999999 699999999999999888777788999      99964 55678874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.19  E-value=1e-05  Score=60.82  Aligned_cols=71  Identities=10%  Similarity=0.255  Sum_probs=39.9

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      .++.++++||...++......+..++.....+..+|++      ++.... ...+..+.  ..+.+.+.+.+++.+-+..
T Consensus       101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~------~~~~~~~~~~l~~r~--~~i~~~~~~~~~~~~~l~~  172 (226)
T 2chg_A          101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS------CNYVSRIIEPIQSRC--AVFRFKPVPKEAMKKRLLE  172 (226)
T ss_dssp             CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE------ESCGGGSCHHHHTTS--EEEECCCCCHHHHHHHHHH
T ss_pred             cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEE------eCChhhcCHHHHHhC--ceeecCCCCHHHHHHHHHH
Confidence            56889999998766665544455555443335556666      444322 23344553  2455666666655544443

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.19  E-value=1.2e-06  Score=73.95  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYT   44 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~   44 (193)
                      +|++++++|+|||||||++..|++.+.+..++|.+.+.+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~  136 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence            6889999999999999999999999999989999887765

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.18  E-value=1.5e-06  Score=67.44  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      +.+|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~   58 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM   58 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence            348999999999999999999999999887 566644

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.17  E-value=1.4e-06  Score=71.45  Aligned_cols=76  Identities=13%  Similarity=0.207  Sum_probs=45.0

Q ss_pred             CCCCEEEEecCCCcccc--ccchHHHHHHHHh----C-CCcEEEEecCCCCCCChhH----HHHHhcCCCcEEEEeCCCC
Q 029421          106 ADTDLFVIDEVGKMELF--SSSFFPAVLRILE----S-NIPVLASIPAPKSGRDIPA----VARLRNHPGATIFTLSPGN  174 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~--~~~~~~~ll~~l~----~-g~tvl~~~~~~~~tHd~~~----~~~~~d~~~~~~~~~~~~~  174 (193)
                      ..|.++++||...+...  ....+..+++...    . +..+|++      |++.+.    ...+..+.....+.+.+.+
T Consensus       129 ~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~------t~~~~~~~~l~~~l~~r~~~~~i~l~~l~  202 (387)
T 2v1u_A          129 RGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI------TNSLGFVENLEPRVKSSLGEVELVFPPYT  202 (387)
T ss_dssp             CSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE------CSCSTTSSSSCHHHHTTTTSEECCBCCCC
T ss_pred             CCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE------ECCCchHhhhCHHHHhcCCCeEEeeCCCC
Confidence            34779999999665544  4455666666553    4 6688888      655421    2234455544455666667


Q ss_pred             hhHHHHHHHHHHH
Q 029421          175 RDSLKDNIYYQLT  187 (193)
Q Consensus       175 ~~~l~~~~~~~~~  187 (193)
                      .+++.+-+...+.
T Consensus       203 ~~~~~~il~~~~~  215 (387)
T 2v1u_A          203 APQLRDILETRAE  215 (387)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7666665555544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.16  E-value=1.5e-06  Score=65.63  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF   42 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~   42 (193)
                      ..+++|+|++||||||+.+.|++.+    |...+++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d   50 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD   50 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence            4589999999999999999999876    55556543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.16  E-value=3.2e-06  Score=66.96  Aligned_cols=28  Identities=39%  Similarity=0.534  Sum_probs=24.6

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +..+..+.|.||+|+|||||++.++..+
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3567789999999999999999999874

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.14  E-value=5.2e-07  Score=81.65  Aligned_cols=32  Identities=22%  Similarity=0.244  Sum_probs=26.1

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASN   34 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~   34 (193)
                      +..|+.++++||+||||||++.++++...+..
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~  137 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH  137 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            45688999999999999999999977654443

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.14  E-value=2.1e-06  Score=69.82  Aligned_cols=73  Identities=10%  Similarity=0.116  Sum_probs=42.1

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChh-HHHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIP-AVARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~-~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      .++.++++||...+++.....+..++........+|++      +++.. ....+.+|.  ..+.+.+.+.+++.+.+..
T Consensus       132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~------~~~~~~l~~~l~sR~--~~i~~~~~~~~~~~~~l~~  203 (353)
T 1sxj_D          132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLI------CNYVTRIIDPLASQC--SKFRFKALDASNAIDRLRF  203 (353)
T ss_dssp             CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEE------ESCGGGSCHHHHHHS--EEEECCCCCHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEE------eCchhhCcchhhccC--ceEEeCCCCHHHHHHHHHH
Confidence            35679999998777776655555555554334455666      44433 223444443  2445566666666665554


Q ss_pred             HH
Q 029421          185 QL  186 (193)
Q Consensus       185 ~~  186 (193)
                      .+
T Consensus       204 ~~  205 (353)
T 1sxj_D          204 IS  205 (353)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.14  E-value=1.1e-06  Score=66.28  Aligned_cols=22  Identities=32%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +++|+|+|||||||+.+.|+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999993

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.09  E-value=2.4e-05  Score=60.52  Aligned_cols=27  Identities=37%  Similarity=0.455  Sum_probs=21.8

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+|.++.++||.|+||||++..++.-+
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            468899999999999999876665544

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.07  E-value=3.5e-05  Score=59.94  Aligned_cols=27  Identities=41%  Similarity=0.525  Sum_probs=23.1

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ....-+.|.||+|+||||+++.++..+
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            345568999999999999999999864

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.06  E-value=8e-07  Score=76.87  Aligned_cols=28  Identities=25%  Similarity=0.400  Sum_probs=24.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      |++.+| +.+|+|+||||||||+.+|..+
T Consensus        56 l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           56 LELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             EECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             EecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            356678 9999999999999999999877

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.04  E-value=3.5e-06  Score=62.73  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=24.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      -.+++|+|++|||||||++.|++.+++.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            3589999999999999999999987654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.03  E-value=2.1e-06  Score=65.34  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.+|+|||||||||++.+|.-.+
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            389999999999999999997554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.02  E-value=2.8e-06  Score=71.96  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .++|+|+||+|||||++.|+|...
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~  205 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKER  205 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcc
Confidence            699999999999999999999853

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.02  E-value=3.3e-06  Score=66.30  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      ...+.++.|+|++||||||+.+.|+..+.  .+.+.+++..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~   67 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS   67 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence            45678999999999999999999998864  2456666643

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.00  E-value=2.2e-06  Score=70.81  Aligned_cols=31  Identities=29%  Similarity=0.496  Sum_probs=26.5

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      +++|+++.|.||+|+|||||...++......
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~   90 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE   90 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            5789999999999999999998888665443

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.00  E-value=1.7e-05  Score=59.43  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=19.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~   27 (193)
                      +|.++.++||.||||||++.-++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHH
Confidence            48899999999999999974443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.00  E-value=4e-06  Score=62.52  Aligned_cols=29  Identities=34%  Similarity=0.581  Sum_probs=25.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++..+|.+++|+|++||||||+.+.|+..
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34567899999999999999999999876

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.99  E-value=2.6e-06  Score=71.26  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhh-----------cccCCCCeEEec
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLES-----------LKASNPSLKVQG   41 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl-----------~~~~~G~i~~~g   41 (193)
                      +..|..++|+|+||+|||||++.|+|.           +.|..|.+.+.+
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            567888999999999999999999998           556667666654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.99  E-value=4.4e-06  Score=71.95  Aligned_cols=37  Identities=38%  Similarity=0.580  Sum_probs=29.8

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      +++|  ++|+||||+|||||+++|++...  .+.+.+++.+
T Consensus        63 ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~   99 (499)
T 2dhr_A           63 IPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD   99 (499)
T ss_dssp             CCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred             CCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhH
Confidence            4556  89999999999999999999874  4666666643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.99  E-value=3e-06  Score=62.83  Aligned_cols=27  Identities=37%  Similarity=0.711  Sum_probs=23.6

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+|.+++|+|++||||||+.+.|+..+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999998653

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.98  E-value=8.5e-05  Score=64.11  Aligned_cols=72  Identities=10%  Similarity=0.096  Sum_probs=42.6

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChh--HHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIP--AVARLRNHPGATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~--~~~~~~d~~~~~~~~~~~~~~~~l~~~~  182 (193)
                      ..+.++++||...+....+..+..+.+.+.. +..+|++      +.+..  .+..+..+  ...+.+.+.+.+++.+.+
T Consensus       147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli------~~~~~~~~l~~l~~r--~~~i~f~~~~~~~~~~~L  218 (516)
T 1sxj_A          147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILI------CNERNLPKMRPFDRV--CLDIQFRRPDANSIKSRL  218 (516)
T ss_dssp             TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEE------ESCTTSSTTGGGTTT--SEEEECCCCCHHHHHHHH
T ss_pred             CCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEE------EcCCCCccchhhHhc--eEEEEeCCCCHHHHHHHH
Confidence            5678999999966655555555666666655 6778887      44422  12222222  234566666766666655


Q ss_pred             HHH
Q 029421          183 YYQ  185 (193)
Q Consensus       183 ~~~  185 (193)
                      ...
T Consensus       219 ~~i  221 (516)
T 1sxj_A          219 MTI  221 (516)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.98  E-value=2.2e-06  Score=71.12  Aligned_cols=51  Identities=8%  Similarity=0.105  Sum_probs=43.3

Q ss_pred             CCC-CCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          105 GAD-TDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       105 ~~~-p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ..+ |+++||||| ++||+..+..+.+++..+..+.+||++      ||+.. +..+||+
T Consensus       302 ~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~------th~~~-~~~~~d~  354 (371)
T 3auy_A          302 IGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIII------THHRE-LEDVADV  354 (371)
T ss_dssp             HSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEE------ESCGG-GGGGCSE
T ss_pred             hcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEE------EChHH-HHhhCCE
Confidence            468 999999999 699999999999998887656689999      99975 5677776

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.97  E-value=3.1e-06  Score=70.17  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +++|+|+||||||||++.++|...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            399999999999999999998754

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.96  E-value=3e-05  Score=63.39  Aligned_cols=26  Identities=31%  Similarity=0.598  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      .+.|.||.|+||||+++.++..+...
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~~   65 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNCE   65 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            58999999999999999999877543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.96  E-value=2.1e-05  Score=56.29  Aligned_cols=27  Identities=19%  Similarity=0.194  Sum_probs=23.1

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..+.-+.|.||+|+|||++.+.|....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            345678999999999999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.95  E-value=4e-06  Score=61.63  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=23.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+|..++|+|++|+|||||++.+++..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999999864

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.95  E-value=5.3e-06  Score=64.26  Aligned_cols=27  Identities=19%  Similarity=0.297  Sum_probs=24.5

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+|.+++|+|++||||||+.+.|++.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            468899999999999999999999854

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.94  E-value=3.7e-05  Score=61.42  Aligned_cols=28  Identities=32%  Similarity=0.484  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      .+..+.|.||+|+||||+.+.++..+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~   93 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHR   93 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3457999999999999999999987643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.93  E-value=5.5e-06  Score=60.38  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999998775

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.92  E-value=7.5e-06  Score=60.22  Aligned_cols=27  Identities=15%  Similarity=0.351  Sum_probs=24.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .|.++.|+|++||||||+.+.|+..+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            367899999999999999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.89  E-value=5.2e-06  Score=61.29  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999975

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.87  E-value=1.3e-05  Score=61.14  Aligned_cols=32  Identities=19%  Similarity=0.145  Sum_probs=26.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      .+.+++|+|++||||||+.+.|+.+     |...++.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~   34 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA   34 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence            4678999999999999999999973     5444543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.86  E-value=1.2e-05  Score=66.99  Aligned_cols=37  Identities=14%  Similarity=0.187  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      .+..++|+||+|||||||++.+++...+..+.|.+.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            5678999999999999999999998888778887754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.85  E-value=8.1e-06  Score=59.33  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|++|+|||||++.++|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.84  E-value=1e-05  Score=59.99  Aligned_cols=27  Identities=41%  Similarity=0.632  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +|.+++|.|++||||||+.+.|+..+.
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367999999999999999999987653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.83  E-value=1e-05  Score=60.16  Aligned_cols=28  Identities=36%  Similarity=0.465  Sum_probs=24.8

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +..+.++.|+|++||||||+.+.|+..+
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4568899999999999999999998754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.81  E-value=1.5e-05  Score=58.99  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      .+++|+|++|||||||+..|+..++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            479999999999999999999987754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.81  E-value=1.6e-05  Score=63.71  Aligned_cols=36  Identities=28%  Similarity=0.529  Sum_probs=28.4

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      ..|.++.|.|||||||||+.+.|+..++  .|.+.+++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            3577999999999999999999987653  25566654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.81  E-value=7.3e-06  Score=60.67  Aligned_cols=23  Identities=30%  Similarity=0.635  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.80  E-value=9.3e-06  Score=66.93  Aligned_cols=30  Identities=20%  Similarity=0.407  Sum_probs=26.6

Q ss_pred             cccCCCE--EEEEcCCCCcHHHHHHHHHhhcc
Q 029421            2 AAGAGKC--FLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         2 ~i~~Ge~--~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+++|++  ++|+|++||||||+.++|++.+.
T Consensus        18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4678888  99999999999999999999764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.80  E-value=1.6e-05  Score=59.68  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=24.8

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+|.+++|+|+.||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999876

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.79  E-value=1.8e-05  Score=59.26  Aligned_cols=32  Identities=19%  Similarity=0.011  Sum_probs=26.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEece
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGF   42 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~   42 (193)
                      ..+++|+|++||||||+.+.|+..     |...++.-
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d   39 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD   39 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence            468999999999999999999985     65666543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.79  E-value=1.4e-05  Score=59.05  Aligned_cols=28  Identities=39%  Similarity=0.381  Sum_probs=24.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +..+.+++|+|++||||||+.+.|+..+
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            4567889999999999999999998664

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.78  E-value=1.3e-05  Score=62.43  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .-+++|.||+||||||+.+.|+..+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999999654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.78  E-value=3.9e-06  Score=63.58  Aligned_cols=26  Identities=27%  Similarity=0.516  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      +++|.|++||||||+++.|+..+...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999887643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.77  E-value=1.4e-05  Score=58.12  Aligned_cols=20  Identities=40%  Similarity=0.697  Sum_probs=18.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHH
Q 029421            7 KCFLVTGPPGVGKTTLIMRV   26 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i   26 (193)
                      .+++|+||+||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.76  E-value=1.7e-05  Score=59.40  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.76  E-value=1.7e-05  Score=63.81  Aligned_cols=28  Identities=36%  Similarity=0.531  Sum_probs=25.7

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.++..+.|.||+|+|||||++++++..
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            5678899999999999999999999875

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.75  E-value=1.5e-05  Score=67.23  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=28.4

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASN   34 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~   34 (193)
                      ++.+|++++|+||||||||||+++|++++.+++
T Consensus        22 ~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           22 GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            456789999999999999999999999988754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.75  E-value=1.6e-05  Score=59.76  Aligned_cols=23  Identities=30%  Similarity=0.745  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+||||||||||++.|....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999997654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.75  E-value=1.6e-05  Score=66.28  Aligned_cols=32  Identities=31%  Similarity=0.526  Sum_probs=28.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +.+.+|+.++|+||+|+|||||++.|++.+..
T Consensus       169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~  200 (422)
T 3ice_A          169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY  200 (422)
T ss_dssp             SCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             eeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence            46789999999999999999999999988643

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.75  E-value=1.7e-05  Score=65.72  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=25.0

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +++|+++.|.||+|+|||||...++....
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~   99 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQ   99 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence            56899999999999999999988775543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.75  E-value=1.5e-05  Score=58.72  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            68999999999999999999865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.74  E-value=1.6e-05  Score=62.52  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|+||||||||||.+.|++.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999999865

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.74  E-value=0.00012  Score=55.16  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+|.++.++||-||||||.+--++.-+
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            568999999999999998876665544

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.73  E-value=1.9e-05  Score=59.62  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=25.1

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ..+|.+++|+|+.||||||+.+.|+..+.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999999997654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.72  E-value=1.3e-05  Score=66.40  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      +.+| +.+|+|||||||||++.+|.=
T Consensus        23 f~~g-l~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           23 FEKG-IVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             CCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4444 899999999999999999973

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.71  E-value=2.1e-05  Score=59.33  Aligned_cols=28  Identities=32%  Similarity=0.373  Sum_probs=24.7

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ..|.+++|+|+.||||||+.+.|+..+.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999987643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.71  E-value=2.2e-05  Score=59.04  Aligned_cols=28  Identities=18%  Similarity=0.254  Sum_probs=25.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +|.+++|.|++||||||+.+.|+..+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            5779999999999999999999987654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.71  E-value=2e-05  Score=58.64  Aligned_cols=27  Identities=26%  Similarity=0.465  Sum_probs=24.2

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++.+++|+|++||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998754

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.71  E-value=7.7e-05  Score=60.64  Aligned_cols=76  Identities=13%  Similarity=0.179  Sum_probs=46.2

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhC---CCcEEEEecCCCCCCChhHHH-----HHhcCCCcEEEEeCCCChhH
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES---NIPVLASIPAPKSGRDIPAVA-----RLRNHPGATIFTLSPGNRDS  177 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~---g~tvl~~~~~~~~tHd~~~~~-----~~~d~~~~~~~~~~~~~~~~  177 (193)
                      ..+-++++||...+.  .+..+..+++....   ...+|.+      +++++...     ++.++.....+...+.+.++
T Consensus       131 ~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i------~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~e  202 (318)
T 3te6_A          131 KRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICV------GGHNVTIREQINIMPSLKAHFTEIKLNKVDKNE  202 (318)
T ss_dssp             SCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEE------CCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHH
T ss_pred             CCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEE------ecCcccchhhcchhhhccCCceEEEeCCCCHHH
Confidence            456799999995544  34555666653322   3456666      55543222     23344544566777778888


Q ss_pred             HHHHHHHHHHHH
Q 029421          178 LKDNIYYQLTDA  189 (193)
Q Consensus       178 l~~~~~~~~~~~  189 (193)
                      +.+-+.+.+...
T Consensus       203 l~~Il~~Rl~~~  214 (318)
T 3te6_A          203 LQQMIITRLKSL  214 (318)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            888777777653

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.71  E-value=2.3e-05  Score=58.01  Aligned_cols=26  Identities=19%  Similarity=0.181  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.+++|+|++||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.71  E-value=2e-05  Score=57.71  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999987

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.68  E-value=2.8e-05  Score=60.68  Aligned_cols=25  Identities=40%  Similarity=0.614  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..-+.|.||+|+|||||+++|++..
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHc
Confidence            3458999999999999999999875

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.68  E-value=2.1e-05  Score=63.39  Aligned_cols=24  Identities=33%  Similarity=0.589  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +.+++|+|+||+|||||++.|.|.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            348999999999999999999986

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.67  E-value=2.5e-05  Score=60.35  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNP   35 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G   35 (193)
                      .++|+|++|+|||||++.|+|...+.++
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            5899999999999999999987655444

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.67  E-value=2.5e-05  Score=64.36  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh--hcccCCCCeE
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE--SLKASNPSLK   38 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g--l~~~~~G~i~   38 (193)
                      .++|+|++|||||||++.|+|  .+++.+|.+.
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT   68 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT   68 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence            799999999999999999999  5566667654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.66  E-value=3e-05  Score=61.94  Aligned_cols=31  Identities=35%  Similarity=0.594  Sum_probs=27.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccCCCCe
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSL   37 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i   37 (193)
                      ..+.|.||+|+||||++++|++.+.+..+.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            5799999999999999999999987765543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.65  E-value=2.7e-05  Score=57.76  Aligned_cols=26  Identities=35%  Similarity=0.520  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++.+++|+|++||||||+.+.|+..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            36689999999999999999998654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.64  E-value=2.9e-05  Score=58.33  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|+|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999999865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.64  E-value=2.2e-05  Score=57.83  Aligned_cols=27  Identities=33%  Similarity=0.428  Sum_probs=19.0

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++.+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            357899999999999999999998764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.63  E-value=0.00012  Score=58.50  Aligned_cols=71  Identities=8%  Similarity=0.158  Sum_probs=40.3

Q ss_pred             CCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhHHHHHHHHH
Q 029421          107 DTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDSLKDNIYYQ  185 (193)
Q Consensus       107 ~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~  185 (193)
                      ++.++++||...+.......+..++.....+..+|++      +++... ...+..+  ...+.+.+.+.+++.+-+...
T Consensus       107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~------~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~  178 (323)
T 1sxj_B          107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFA------CNQSNKIIEPLQSQ--CAILRYSKLSDEDVLKRLLQI  178 (323)
T ss_dssp             CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEE------ESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHH
T ss_pred             CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEE------eCChhhchhHHHhh--ceEEeecCCCHHHHHHHHHHH
Confidence            4889999998666655444445555443335566666      555432 2334444  235566666666665555443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.62  E-value=2e-05  Score=58.78  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=24.0

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..+.+++|+|++||||||+.+.|+..+
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999998765

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.61  E-value=0.00031  Score=58.32  Aligned_cols=25  Identities=40%  Similarity=0.648  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++..+.|.||+|+|||||++.++..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999999876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.61  E-value=4.4e-05  Score=63.15  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=29.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh-----------hcccCCCCeEEec
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLE-----------SLKASNPSLKVQG   41 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~g-----------l~~~~~G~i~~~g   41 (193)
                      |..++|+|.+|+|||||++.|++           .+.|+.|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            45789999999999999999998           3456667666654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.60  E-value=6.1e-05  Score=56.51  Aligned_cols=27  Identities=33%  Similarity=0.492  Sum_probs=23.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      ..+.|.||+|+|||||++.++......
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            689999999999999999999876543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.60  E-value=3.3e-05  Score=57.15  Aligned_cols=24  Identities=50%  Similarity=0.722  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +++|.|++||||||+.+.|+..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.60  E-value=0.00041  Score=58.77  Aligned_cols=26  Identities=35%  Similarity=0.535  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +..-+.|.||+|+|||||++.++..+
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999999875

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.59  E-value=2.2e-05  Score=58.88  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHh
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      +++ .++++|++|+|||||++.+.+
T Consensus        24 ~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             CCc-EEEEECCCCCCHHHHHHHHhc
Confidence            344 478999999999999999975

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.58  E-value=4.5e-05  Score=58.17  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=23.7

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+|.+++|+|++||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            357899999999999999999998765

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.56  E-value=5.4e-05  Score=56.88  Aligned_cols=26  Identities=38%  Similarity=0.649  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.+++|+|++||||||+.+.|+..+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.55  E-value=5e-05  Score=56.18  Aligned_cols=26  Identities=27%  Similarity=0.477  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.+++|+|++||||||+.+.|+..+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.55  E-value=0.00021  Score=57.48  Aligned_cols=64  Identities=16%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             CCCCEEEEecCCCcc-ccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhH
Q 029421          106 ADTDLFVIDEVGKME-LFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDS  177 (193)
Q Consensus       106 ~~p~llllDEp~~LD-~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~  177 (193)
                      .+++++++||...+. ......+..++.....+..+|++      +++... ...+.+|.  .++.+.+++.++
T Consensus       104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~------~n~~~~l~~~l~sR~--~~i~~~~~~~~e  169 (324)
T 3u61_B          104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT------ANNIDGIIKPLQSRC--RVITFGQPTDED  169 (324)
T ss_dssp             SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE------ESSGGGSCTTHHHHS--EEEECCCCCHHH
T ss_pred             CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE------eCCccccCHHHHhhC--cEEEeCCCCHHH
Confidence            478999999996665 44444555555554446777777      554332 11222232  345665666554

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.54  E-value=4.8e-05  Score=58.38  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..+.+++|+|++||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.53  E-value=4e-05  Score=57.03  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|++|+|||||++.+.+-
T Consensus        25 ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999873

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.52  E-value=2.6e-05  Score=55.74  Aligned_cols=37  Identities=11%  Similarity=0.199  Sum_probs=25.7

Q ss_pred             CCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEE
Q 029421          107 DTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLAS  143 (193)
Q Consensus       107 ~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~  143 (193)
                      +..++++||...+++..+..+..++..... +..+|++
T Consensus        75 ~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~  112 (143)
T 3co5_A           75 EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIAS  112 (143)
T ss_dssp             TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEE
T ss_pred             CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            357899999988877666656666655433 5667777

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.51  E-value=5.4e-05  Score=57.38  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+||+||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999997654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.51  E-value=5.2e-05  Score=57.92  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=23.7

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..+.+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.50  E-value=6.5e-05  Score=56.38  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ...+++|+|++||||||+.+.|+..+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34689999999999999999998654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.50  E-value=5.3e-05  Score=56.00  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.+++|+|++||||||+.+.|+..+
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3579999999999999999998754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.49  E-value=5.9e-05  Score=55.86  Aligned_cols=24  Identities=38%  Similarity=0.440  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +++|+|+.||||||+.+.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999988664

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.49  E-value=9.9e-05  Score=60.49  Aligned_cols=27  Identities=19%  Similarity=0.022  Sum_probs=25.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +++|+++.|.||+|||||||+..++..
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999999875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.49  E-value=5.1e-05  Score=59.93  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|++|||||||++.++|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.49  E-value=6.2e-05  Score=59.19  Aligned_cols=28  Identities=36%  Similarity=0.547  Sum_probs=23.9

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .++.++.|+|++||||||+.+.|+..+.
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999987643

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.49  E-value=5.8e-05  Score=55.01  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+++|+|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.48  E-value=7e-05  Score=54.56  Aligned_cols=24  Identities=25%  Similarity=0.366  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++++|+|+.||||||+.+.|+..+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999998754

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.48  E-value=4.4e-05  Score=58.97  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +.+|+.+++.||+||||||++..+...
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence            456999999999999999998877543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.47  E-value=0.00024  Score=56.81  Aligned_cols=23  Identities=48%  Similarity=0.832  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.|.||.|+||||+++.++..+
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            58999999999999999999875

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.47  E-value=9.3e-05  Score=54.76  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|+|||||++.+.+-
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999877654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.47  E-value=7.4e-05  Score=56.69  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+||+||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998664

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.46  E-value=0.00063  Score=52.11  Aligned_cols=27  Identities=19%  Similarity=0.208  Sum_probs=21.9

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+|.+..++||-||||||.+--++--+
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999876665443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.46  E-value=4e-05  Score=63.32  Aligned_cols=29  Identities=28%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcccCCCCe
Q 029421            9 FLVTGPPGVGKTTLIMRVLESLKASNPSL   37 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~~~~~G~i   37 (193)
                      ++|+|++|+|||||++.|.+......+.+
T Consensus        40 I~vvG~~g~GKSTLln~L~~~~~~~~~~~   68 (361)
T 2qag_A           40 LMVVGESGLGKSTLINSLFLTDLYPERVI   68 (361)
T ss_dssp             EEECCCTTSCHHHHHHHHTTCCC------
T ss_pred             EEEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence            69999999999999999988755444443

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.46  E-value=7.5e-05  Score=58.14  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=23.6

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++.+++|+||+||||||+.+.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.45  E-value=0.00011  Score=58.57  Aligned_cols=23  Identities=39%  Similarity=0.767  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.|.||+|+||||+++.++..+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            48999999999999999998875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.45  E-value=8.1e-05  Score=54.04  Aligned_cols=23  Identities=26%  Similarity=0.164  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998854

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.43  E-value=8.5e-05  Score=57.99  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -+++|+|++||||||+.+.|+..+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998854

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.43  E-value=3.7e-05  Score=61.64  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=20.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++-+++|.||+||||||+.+.|+..+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999987543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.42  E-value=8.2e-05  Score=56.07  Aligned_cols=24  Identities=29%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -+++|+|+.||||||+.+.++..+
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            479999999999999999998763

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.42  E-value=8.3e-05  Score=54.95  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|++|||||||++.+.+..
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.41  E-value=0.00013  Score=59.23  Aligned_cols=28  Identities=21%  Similarity=0.167  Sum_probs=25.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|+++.|.||+|||||||+..++...
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            6789999999999999999999998753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.41  E-value=0.0001  Score=58.58  Aligned_cols=26  Identities=42%  Similarity=0.597  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++..+.|.||+|+||||+++.+++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.38  E-value=9.8e-05  Score=52.93  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999875

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.37  E-value=0.00011  Score=56.45  Aligned_cols=28  Identities=29%  Similarity=0.507  Sum_probs=24.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.+..++.|+||+||||||..+.|+..+
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4566789999999999999999998764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.37  E-value=0.0009  Score=60.28  Aligned_cols=23  Identities=48%  Similarity=0.801  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.|.||+|+|||++.+.|+..+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999886

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.36  E-value=0.00011  Score=52.37  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.36  E-value=0.00063  Score=52.57  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=26.9

Q ss_pred             CCCCEEEEecCC--Ccccccc-chHHHHHHHHhCCCcEEEEec
Q 029421          106 ADTDLFVIDEVG--KMELFSS-SFFPAVLRILESNIPVLASIP  145 (193)
Q Consensus       106 ~~p~llllDEp~--~LD~~~~-~~~~~ll~~l~~g~tvl~~~~  145 (193)
                      ..|+++|+||++  +.+.... ..+..+...+..|..++.++|
T Consensus        83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N  125 (228)
T 2r8r_A           83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN  125 (228)
T ss_dssp             HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence            469999999994  3443332 455555555556989999844

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.36  E-value=0.00014  Score=53.12  Aligned_cols=28  Identities=25%  Similarity=0.474  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      .+..+.|.||.|+|||||++.++..+..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3467899999999999999999887643

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.36  E-value=7.3e-05  Score=72.41  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK   38 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~   38 (193)
                      +.+|+++.|.||+|+|||||+..++.......+.+.
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vl  764 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA  764 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeE
Confidence            678999999999999999999999887765545543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.35  E-value=0.00011  Score=56.23  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.35  E-value=0.00012  Score=52.28  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.34  E-value=0.00011  Score=55.98  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +|..++|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.34  E-value=0.00011  Score=52.38  Aligned_cols=22  Identities=32%  Similarity=0.700  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.33  E-value=0.00012  Score=52.24  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.33  E-value=0.00013  Score=52.46  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.33  E-value=0.00011  Score=58.57  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ..+++|+|++||||||+.+.|+.+
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~l   98 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKNL   98 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            347999999999999999999853

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.33  E-value=0.00011  Score=53.10  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|++|+|||||++.+.+-
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            4899999999999999999865

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.32  E-value=0.00012  Score=52.55  Aligned_cols=22  Identities=36%  Similarity=0.668  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999874

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.32  E-value=0.00013  Score=52.42  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999999875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.32  E-value=0.00013  Score=52.29  Aligned_cols=23  Identities=22%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.31  E-value=0.00013  Score=62.24  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      .+-+|+.++|.|++|+|||||++.|+.-.....+.+.+
T Consensus       147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             hhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            45689999999999999999999998877655565554

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.31  E-value=0.00013  Score=52.92  Aligned_cols=23  Identities=35%  Similarity=0.608  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.31  E-value=0.00014  Score=52.80  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999865

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=97.31  E-value=0.0013  Score=50.40  Aligned_cols=26  Identities=31%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             cCCCEEEEEcCCCCcHHH-HHHHHHhh
Q 029421            4 GAGKCFLVTGPPGVGKTT-LIMRVLES   29 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKST-Ll~~i~gl   29 (193)
                      ..|.+..++||-|||||| |++.+...
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~   52 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRG   52 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999 77877554

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.31  E-value=0.00022  Score=54.57  Aligned_cols=30  Identities=30%  Similarity=0.399  Sum_probs=26.0

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      .+|.++++.|++||||||+++.|+..+...
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~   33 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRER   33 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            468899999999999999999998877643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.31  E-value=0.00012  Score=52.49  Aligned_cols=22  Identities=41%  Similarity=0.752  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4799999999999999999875

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.30  E-value=0.00014  Score=52.05  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.29  E-value=0.00018  Score=52.14  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=22.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +.-.++++|++|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457899999999999999999874

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.29  E-value=0.00012  Score=52.59  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|++|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3789999999999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.29  E-value=0.00013  Score=57.95  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|++|||||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999863

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.29  E-value=0.00026  Score=69.52  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=27.4

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCe
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSL   37 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i   37 (193)
                      +++|+.+.|.||+|+|||||...++-......+.+
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v 1458 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 1458 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence            67899999999999999999998875533333333

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.28  E-value=0.00011  Score=56.81  Aligned_cols=29  Identities=31%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      .+|.++++.|++||||||+++.|+..+..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            57889999999999999999999887653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.27  E-value=8.9e-05  Score=53.22  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|++|+|||||++.+.|.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            4799999999999999999764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.27  E-value=0.00014  Score=52.69  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.27  E-value=0.0002  Score=55.20  Aligned_cols=26  Identities=31%  Similarity=0.572  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+..++|+|+.||||||+.+.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998765

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.26  E-value=0.00015  Score=55.10  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57999999999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.25  E-value=0.00013  Score=53.95  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999875

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=97.25  E-value=0.0013  Score=50.86  Aligned_cols=36  Identities=14%  Similarity=0.093  Sum_probs=27.2

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCC
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRD  152 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd  152 (193)
                      .+.+++++||..-++.     +.++++.+.+ |+.||++      .+|
T Consensus        89 ~~~dvViIDEaQF~~~-----v~el~~~l~~~gi~VI~~------GL~  125 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD-----IVEFCEAMANAGKTVIVA------ALD  125 (234)
T ss_dssp             TTCSEEEESSGGGCTT-----HHHHHHHHHHTTCEEEEE------CCS
T ss_pred             ccCCEEEEEchhhhhh-----HHHHHHHHHhCCCEEEEE------ecc
Confidence            4679999999943321     6677777765 9999999      887

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.25  E-value=0.00018  Score=54.52  Aligned_cols=25  Identities=32%  Similarity=0.521  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.25  E-value=0.00017  Score=51.65  Aligned_cols=22  Identities=27%  Similarity=0.649  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.25  E-value=0.00017  Score=52.72  Aligned_cols=23  Identities=30%  Similarity=0.655  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -++++|+.|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47999999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.25  E-value=9.8e-05  Score=54.37  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -.++++|++|+|||||++.+.+-
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.25  E-value=0.0014  Score=53.16  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=40.7

Q ss_pred             CCCCCEEEEecCCCccccccchHHHHHHHHhC---CCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhHHHH
Q 029421          105 GADTDLFVIDEVGKMELFSSSFFPAVLRILES---NIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDSLKD  180 (193)
Q Consensus       105 ~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~---g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~l~~  180 (193)
                      ..+.+++++||+..|...+   ...+++.+.+   +..+|++      +++... ...+..|  ...+.+.+.+.+++.+
T Consensus       106 ~~~~kvviIdead~l~~~a---~naLLk~lEep~~~~~~Il~------t~~~~~l~~ti~SR--c~~~~~~~~~~~~~~~  174 (334)
T 1a5t_A          106 LGGAKVVWVTDAALLTDAA---ANALLKTLEEPPAETWFFLA------TREPERLLATLRSR--CRLHYLAPPPEQYAVT  174 (334)
T ss_dssp             TSSCEEEEESCGGGBCHHH---HHHHHHHHTSCCTTEEEEEE------ESCGGGSCHHHHTT--SEEEECCCCCHHHHHH
T ss_pred             cCCcEEEEECchhhcCHHH---HHHHHHHhcCCCCCeEEEEE------eCChHhCcHHHhhc--ceeeeCCCCCHHHHHH
Confidence            3567999999986665433   4566676765   3455666      555432 3344444  2445666666666665


Q ss_pred             HHHH
Q 029421          181 NIYY  184 (193)
Q Consensus       181 ~~~~  184 (193)
                      .+.+
T Consensus       175 ~L~~  178 (334)
T 1a5t_A          175 WLSR  178 (334)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.24  E-value=0.00017  Score=53.15  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999999863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.24  E-value=0.00018  Score=53.23  Aligned_cols=22  Identities=36%  Similarity=0.604  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.23  E-value=0.00018  Score=52.74  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.23  E-value=0.00018  Score=55.96  Aligned_cols=28  Identities=36%  Similarity=0.573  Sum_probs=25.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +|.++++.|++||||||+++.|+..+..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5889999999999999999999987764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.23  E-value=0.00014  Score=53.48  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            58999999999999999998763

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.23  E-value=0.00019  Score=51.65  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .-.++++|+.|+|||||++.+.+-
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            345899999999999999999764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.23  E-value=0.00012  Score=53.11  Aligned_cols=22  Identities=36%  Similarity=0.782  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.22  E-value=0.00021  Score=52.62  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .++|+|+.|+|||||++.+.|...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            489999999999999999988654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.21  E-value=0.0002  Score=51.22  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|++|+|||||++.+.+-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.21  E-value=0.0002  Score=51.92  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4899999999999999999875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.21  E-value=0.00019  Score=57.16  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=20.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      .++.|+|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.21  E-value=0.00015  Score=53.26  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|++|+|||||++.+.+-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999999875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.20  E-value=0.00019  Score=52.36  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +..+.|.||+|+|||||++.++..+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            557899999999999999999987644

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.20  E-value=0.00019  Score=51.97  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.20  E-value=0.00031  Score=53.74  Aligned_cols=29  Identities=34%  Similarity=0.449  Sum_probs=25.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      +|.++++-|++||||||.++.|...+...
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~   30 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQL   30 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            58899999999999999999999887653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.20  E-value=0.00011  Score=62.11  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=28.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      .+++++|++|+||||++..|++.+.....++.+-.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~  134 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA  134 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            58999999999999999999998765444555433

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.19  E-value=0.00022  Score=58.40  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3799999999999999999998763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.19  E-value=0.00021  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.19  E-value=0.00021  Score=52.04  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999999875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.19  E-value=0.00021  Score=52.55  Aligned_cols=22  Identities=32%  Similarity=0.700  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+++-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999875

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.18  E-value=0.00022  Score=51.80  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            48999999999999999998753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.18  E-value=0.00031  Score=59.53  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      ++.+++++|++||||||++..|+..+....-++.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            35799999999999999999999888765445544

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.17  E-value=0.00013  Score=60.24  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=25.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHh
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      |++.+| +++|+|||||||||++++|.+
T Consensus        22 ~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           22 LNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            467788 999999999999999999998

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.17  E-value=0.00022  Score=53.76  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|++|+|||||++.+.+-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.17  E-value=0.00024  Score=51.64  Aligned_cols=22  Identities=27%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.16  E-value=0.00021  Score=60.07  Aligned_cols=26  Identities=35%  Similarity=0.497  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ...++.|+|++||||||+.+.|+..+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            46899999999999999999997643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.15  E-value=0.00022  Score=52.15  Aligned_cols=23  Identities=39%  Similarity=0.665  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.15  E-value=0.0004  Score=56.15  Aligned_cols=28  Identities=18%  Similarity=0.405  Sum_probs=25.1

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.+|+++.|.|++|+|||||+..++...
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999887553

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.15  E-value=0.00031  Score=53.96  Aligned_cols=29  Identities=34%  Similarity=0.476  Sum_probs=26.4

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      .+|.++++-|+.||||||+++.|+..+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            47999999999999999999999988765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.14  E-value=0.00025  Score=52.77  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999865

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.14  E-value=0.00025  Score=53.65  Aligned_cols=25  Identities=36%  Similarity=0.506  Sum_probs=22.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      -.++++|+.|||||||++.+++...
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4789999999999999999988753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.14  E-value=0.00026  Score=52.77  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.14  E-value=0.00023  Score=52.25  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|++|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.13  E-value=0.00024  Score=57.15  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|+|||||++.+.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.13  E-value=0.00028  Score=53.76  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++.|+||+||||+|..+.|+.-+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.13  E-value=0.0008  Score=61.44  Aligned_cols=27  Identities=26%  Similarity=0.487  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      ...+.|+||+|+||||+++.++..+..
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l~~  217 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRIVK  217 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence            345789999999999999999988754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.13  E-value=0.00026  Score=52.15  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.13  E-value=0.00035  Score=57.22  Aligned_cols=37  Identities=24%  Similarity=0.434  Sum_probs=30.2

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      +.+|+++.|.|++|+|||||+..++.......+.+.+
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~   79 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV   79 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            6789999999999999999999998776554444544

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.13  E-value=0.0001  Score=53.86  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      .-.++++|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            44699999999999999998863

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.13  E-value=0.0003  Score=54.40  Aligned_cols=27  Identities=19%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .|.+++|.|+.||||||+++.|+..++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999998763

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.13  E-value=0.00025  Score=57.16  Aligned_cols=22  Identities=36%  Similarity=0.668  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +++|+|++|+|||||++.+.|.
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7999999999999999999985

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.12  E-value=0.00027  Score=52.11  Aligned_cols=23  Identities=35%  Similarity=0.676  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.12  E-value=0.00025  Score=52.50  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.12  E-value=0.00028  Score=51.53  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.11  E-value=0.00025  Score=58.79  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|++|+|||||++.|++..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999873

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.11  E-value=0.00026  Score=52.31  Aligned_cols=22  Identities=36%  Similarity=0.714  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999874

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.11  E-value=0.00029  Score=51.37  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.11  E-value=0.00025  Score=55.67  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|||||||++.+.|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999986

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.10  E-value=0.0003  Score=54.28  Aligned_cols=29  Identities=28%  Similarity=0.232  Sum_probs=25.6

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      ..|.++++.|++||||||+.+.|+..+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            36889999999999999999999887654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.08  E-value=0.0005  Score=56.13  Aligned_cols=37  Identities=35%  Similarity=0.710  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      +|..+.|.||+|+|||||++.++..+......+.+.+
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~  105 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG  105 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence            3568999999999999999999998764433344443

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.08  E-value=0.00032  Score=51.67  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.08  E-value=0.00028  Score=53.57  Aligned_cols=25  Identities=32%  Similarity=0.583  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .|..++|+||+|||||||...|+..
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.08  E-value=0.00031  Score=52.27  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.08  E-value=0.00028  Score=52.61  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            48999999999999999999753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.07  E-value=0.00029  Score=54.96  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|||||||++.|.|-
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999975

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.07  E-value=0.00036  Score=56.77  Aligned_cols=24  Identities=33%  Similarity=0.647  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+++|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999999875

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.07  E-value=0.00033  Score=51.75  Aligned_cols=22  Identities=27%  Similarity=0.714  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.06  E-value=0.0003  Score=51.97  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            48999999999999999998753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.06  E-value=0.00031  Score=51.18  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999853

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.06  E-value=0.00031  Score=52.85  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.05  E-value=0.00035  Score=50.80  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.05  E-value=0.00032  Score=52.22  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999875

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.05  E-value=0.00027  Score=51.84  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .-.++++|+.|+|||||++.+.+-
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            345899999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.05  E-value=0.00018  Score=53.75  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.04  E-value=0.00036  Score=51.76  Aligned_cols=22  Identities=36%  Similarity=0.671  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|+.|+|||||++.+.+-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.04  E-value=0.00036  Score=51.50  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.04  E-value=0.00036  Score=51.63  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|++|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.03  E-value=0.00033  Score=55.03  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|||||||++.++|.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999985

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.03  E-value=0.00033  Score=52.33  Aligned_cols=23  Identities=35%  Similarity=0.660  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.03  E-value=0.00037  Score=51.24  Aligned_cols=23  Identities=35%  Similarity=0.710  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.03  E-value=0.00037  Score=51.88  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.03  E-value=0.00042  Score=53.19  Aligned_cols=25  Identities=36%  Similarity=0.562  Sum_probs=22.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHH
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~   27 (193)
                      +++|+++.|.|++|+|||||+.-++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            6789999999999999999987654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.03  E-value=0.00039  Score=56.37  Aligned_cols=25  Identities=32%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.+++|+||+|||||||...|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4589999999999999999998765

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.02  E-value=0.00032  Score=56.65  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=24.5

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +++|+++.|.||+|||||||+..++.-
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999988764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.01  E-value=0.00041  Score=56.78  Aligned_cols=26  Identities=23%  Similarity=0.475  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.+++|+||.|||||||...|+..+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            45689999999999999999999765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.01  E-value=0.00039  Score=52.04  Aligned_cols=23  Identities=39%  Similarity=0.699  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -.++++|+.|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999865

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.01  E-value=0.00023  Score=56.21  Aligned_cols=22  Identities=36%  Similarity=0.674  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|+|||||++.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.01  E-value=0.00029  Score=51.16  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|++|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.01  E-value=0.00034  Score=51.40  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -.++++|+.|+|||||++.+.+
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999985

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.00  E-value=0.00032  Score=52.37  Aligned_cols=22  Identities=41%  Similarity=0.759  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.00  E-value=0.00037  Score=55.17  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|.+|||||||++.+.|.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999886

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.99  E-value=0.00043  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            4899999999999999998864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.99  E-value=0.00038  Score=52.45  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|++|+|||||++.+.+-.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998853

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.99  E-value=0.00067  Score=55.72  Aligned_cols=34  Identities=32%  Similarity=0.368  Sum_probs=26.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      .-+++|+|+.|+|||||+..+++.+....-++.+
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~v  112 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAV  112 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence            3479999999999999999999876543334444

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.98  E-value=0.0004  Score=52.06  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.97  E-value=0.00032  Score=51.37  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.97  E-value=0.00024  Score=55.72  Aligned_cols=27  Identities=19%  Similarity=0.149  Sum_probs=23.9

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++.+++|.|+.||||||+.+.|+..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            467899999999999999999998776

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.96  E-value=0.0004  Score=55.61  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|+.|||||||++.|+|.-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999874

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.96  E-value=0.0025  Score=57.30  Aligned_cols=147  Identities=14%  Similarity=0.125  Sum_probs=0.0

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPT   83 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~   83 (193)
                      .+.-.+.|.||+|+|||++.+.++..+  ...-+.++...........+.+|.                     ......
T Consensus       486 ~p~~~~ll~G~~GtGKT~la~~la~~l--~~~~~~i~~s~~~~~~~~~~l~g~---------------------~~g~~g  542 (758)
T 1r6b_X          486 KPVGSFLFAGPTGVGKTEVTVQLSKAL--GIELLRFDMSEYMERHTVSRLIGA---------------------PPGYVG  542 (758)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHHH--TCEEEEEEGGGCSSSSCCSSSCCC---------------------CSCSHH
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHHh--cCCEEEEechhhcchhhHhhhcCC---------------------CCCCcC


Q ss_pred             ccceeeehhhhhhhcccccccCCCCCEEEEecCCCccccccchHHHHHHHHh-----------CCCcEEEEecCCCCCCC
Q 029421           84 VGRYKVDVASFEAIALPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILE-----------SNIPVLASIPAPKSGRD  152 (193)
Q Consensus        84 ~~~~~~~~~~l~~~~l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~-----------~g~tvl~~~~~~~~tHd  152 (193)
                      ........+.+....         ..++++||...+.+.....+..++..-.           .+..+|++      |+.
T Consensus       543 ~~~~~~l~~~~~~~~---------~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t------sN~  607 (758)
T 1r6b_X          543 FDQGGLLTDAVIKHP---------HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT------TNA  607 (758)
T ss_dssp             HHHTTHHHHHHHHCS---------SEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE------ECS
T ss_pred             ccccchHHHHHHhCC---------CcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe------cCc


Q ss_pred             h--------------------------hHHHHHhcCCCcEEEEeCCCChhHHHHHHHHHHHHH
Q 029421          153 I--------------------------PAVARLRNHPGATIFTLSPGNRDSLKDNIYYQLTDA  189 (193)
Q Consensus       153 ~--------------------------~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~  189 (193)
                      .                          ..-..+.+|.+.. +.+.+.+.+++.+-+...+.+.
T Consensus       608 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~-i~~~~l~~~~~~~i~~~~l~~~  669 (758)
T 1r6b_X          608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI-IWFDHLSTDVIHQVVDKFIVEL  669 (758)
T ss_dssp             SCC-----------------CHHHHHHHSCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHH
T ss_pred             chhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcc-eeeCCCCHHHHHHHHHHHHHHH

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.96  E-value=0.0003  Score=52.17  Aligned_cols=22  Identities=36%  Similarity=0.669  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|+.|+|||||++.+.+-
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999999764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.94  E-value=0.00048  Score=51.73  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -.++++|+.|+|||||++.+.+-.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999998753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.94  E-value=0.00036  Score=53.23  Aligned_cols=23  Identities=30%  Similarity=0.632  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -.++|+|++|+|||||++.+.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.94  E-value=0.00044  Score=52.09  Aligned_cols=22  Identities=41%  Similarity=0.661  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.94  E-value=0.0002  Score=54.11  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -.++|+|+.|+|||||++.+.|-
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            36899999999999999999875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.93  E-value=0.00021  Score=55.96  Aligned_cols=24  Identities=46%  Similarity=0.668  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .-+.|.||+|+|||||++.++...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHh
Confidence            347899999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.93  E-value=0.0005  Score=52.17  Aligned_cols=26  Identities=38%  Similarity=0.590  Sum_probs=22.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      -.++|+|+.|+|||||++.++.-...
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            46899999999999999999876543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.93  E-value=0.00045  Score=51.31  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.93  E-value=0.00025  Score=52.27  Aligned_cols=23  Identities=35%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.92  E-value=0.00048  Score=51.41  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.91  E-value=0.00036  Score=51.55  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.+.+-
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.91  E-value=0.00043  Score=52.29  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.91  E-value=0.00052  Score=54.14  Aligned_cols=27  Identities=30%  Similarity=0.473  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      ..++++|.+|+|||||++.+.|-....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~  126 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS  126 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc
Confidence            378999999999999999999875433

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.90  E-value=0.00053  Score=50.61  Aligned_cols=22  Identities=36%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.89  E-value=0.00046  Score=51.30  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -++++|++|+|||||++.+.+-.
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999888753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.89  E-value=0.0003  Score=51.35  Aligned_cols=22  Identities=41%  Similarity=0.690  Sum_probs=9.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.88  E-value=0.0036  Score=50.39  Aligned_cols=67  Identities=12%  Similarity=0.227  Sum_probs=40.1

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhC---CCcEEEEecCCCCCCChh-HHHHHhcCCCcEEEEeCCCChhHHHHH
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES---NIPVLASIPAPKSGRDIP-AVARLRNHPGATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~---g~tvl~~~~~~~~tHd~~-~~~~~~d~~~~~~~~~~~~~~~~l~~~  181 (193)
                      .+.+++|+||+..|...+   ...+++.+.+   ...+|++      +++.. ....+..|    ++.+.+.+.+++.+.
T Consensus        81 ~~~kvviIdead~lt~~a---~naLLk~LEep~~~t~fIl~------t~~~~kl~~tI~SR----~~~f~~l~~~~i~~~  147 (305)
T 2gno_A           81 YTRKYVIVHDCERMTQQA---ANAFLKALEEPPEYAVIVLN------TRRWHYLLPTIKSR----VFRVVVNVPKEFRDL  147 (305)
T ss_dssp             SSSEEEEETTGGGBCHHH---HHHTHHHHHSCCTTEEEEEE------ESCGGGSCHHHHTT----SEEEECCCCHHHHHH
T ss_pred             CCceEEEeccHHHhCHHH---HHHHHHHHhCCCCCeEEEEE------ECChHhChHHHHce----eEeCCCCCHHHHHHH
Confidence            467899999986555433   4556666665   4455666      55543 23455666    345555566666666


Q ss_pred             HHHH
Q 029421          182 IYYQ  185 (193)
Q Consensus       182 ~~~~  185 (193)
                      +.+.
T Consensus       148 L~~~  151 (305)
T 2gno_A          148 VKEK  151 (305)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.88  E-value=0.00078  Score=54.57  Aligned_cols=26  Identities=35%  Similarity=0.535  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +..-+.|.||+|+|||||++.++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHc
Confidence            45679999999999999999999875

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.88  E-value=0.00075  Score=54.61  Aligned_cols=25  Identities=32%  Similarity=0.562  Sum_probs=22.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..+++|+||+|||||||...|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4579999999999999999998765

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.87  E-value=0.00072  Score=54.00  Aligned_cols=26  Identities=19%  Similarity=0.167  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ....+.|.||+|+|||+|.+.|+..+
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34567888999999999999999876

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.86  E-value=0.00051  Score=55.62  Aligned_cols=24  Identities=29%  Similarity=0.619  Sum_probs=22.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHh
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      .|.-++|+|+||+||||+...+.+
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            477899999999999999999987

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.84  E-value=0.00064  Score=50.44  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=20.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHh
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      .|.-+.|.|+||+|||||...+..
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            467799999999999999888765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.83  E-value=0.00051  Score=54.44  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|..|+|||||++.+.|.-
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.83  E-value=0.001  Score=53.59  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +..+.|.||+|+|||+|+++|+..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999998754

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.83  E-value=0.00073  Score=57.17  Aligned_cols=31  Identities=19%  Similarity=0.454  Sum_probs=27.2

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      +.+|+++.|.|++|+|||||+..++......
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~  227 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNAALK  227 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999999998776543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.82  E-value=0.00065  Score=50.77  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            4899999999999999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.82  E-value=0.00059  Score=53.49  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.|-
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.81  E-value=0.00043  Score=51.38  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -.++++|+.|+|||||++.+.+
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.81  E-value=0.0008  Score=53.34  Aligned_cols=25  Identities=40%  Similarity=0.611  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +..+.|.||+|+||||+++.++..+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            5578999999999999999999876

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.00074  Score=51.23  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+.|+|||||++.+.+-
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999875

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.80  E-value=0.00077  Score=51.41  Aligned_cols=27  Identities=22%  Similarity=0.517  Sum_probs=23.2

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++...+.+.||+|+||||+..+|+..+
T Consensus        56 Pkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           56 PKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            344579999999999999999998875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.80  E-value=0.00067  Score=53.37  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++++|++|+|||||++.+.|--
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999753

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.79  E-value=0.00067  Score=51.63  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.79  E-value=0.0007  Score=50.72  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999853

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.78  E-value=0.00085  Score=55.00  Aligned_cols=26  Identities=35%  Similarity=0.497  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++..+.|.||+|+||||+.+.|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999999886

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.77  E-value=0.0008  Score=50.89  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.76  E-value=0.0015  Score=63.45  Aligned_cols=30  Identities=30%  Similarity=0.510  Sum_probs=25.8

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +.+|.++.|.||+|+|||||...++.....
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~  409 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR  409 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999998888765443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.75  E-value=0.00061  Score=57.84  Aligned_cols=23  Identities=39%  Similarity=0.644  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.|.||+|+|||||+++|+...
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Confidence            48999999999999999999875

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.73  E-value=0.00096  Score=50.63  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      |.++++=|+-||||||+++.|+..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999998775

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.72  E-value=0.00084  Score=50.30  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.72  E-value=0.0003  Score=52.27  Aligned_cols=22  Identities=32%  Similarity=0.367  Sum_probs=4.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.71  E-value=0.0018  Score=50.48  Aligned_cols=28  Identities=25%  Similarity=0.283  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      .+..+.|.||+|+|||++.+.|+.....
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~   55 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSR   55 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence            3567899999999999999999987543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.71  E-value=0.0011  Score=53.43  Aligned_cols=25  Identities=36%  Similarity=0.561  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..-+.|.||+|+|||||++.++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4569999999999999999999874

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.70  E-value=0.0014  Score=57.44  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      .+.++.|+||+|+||||+++.+...+......|.+
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~  237 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL  237 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            46799999999999999999999887655445544

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.70  E-value=0.0013  Score=54.02  Aligned_cols=26  Identities=35%  Similarity=0.498  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ....+.|.||+|+|||||++.++...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999999764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.69  E-value=0.00029  Score=53.09  Aligned_cols=22  Identities=50%  Similarity=0.667  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-26
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-11
d1znwa1	182	c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu	8e-06
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	4e-05
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	2e-04
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	3e-04
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	3e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	4e-04
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	5e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	5e-04
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	5e-04
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.001
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.001
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	0.001
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	0.002
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	0.002
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	0.002
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	0.002
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.002
d1gkya_	186	c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac	0.003
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	0.003
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	0.003
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	0.004
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	0.004
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	0.004

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.6 bits (244), Expect = 1e-26
 Identities = 74/181 (40%), Positives = 103/181 (56%), Gaps = 7/181 (3%)

Query: 7   KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
           +   +TGPPGVGKTTLI +  E LK+S   + V GFYT E+RQGG+R+GF+VVTL   R 
Sbjct: 2   RHVFLTGPPGVGKTTLIHKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGTRG 59

Query: 67  PLASINASSPESYRWPTVGRYKVDVASFEAIALP-----ELQVGADTDLFVIDEVGKMEL 121
           PL+ +    P   R   VG+Y VD+ SFE +ALP     +   G    + VIDE+GKMEL
Sbjct: 60  PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMEL 119

Query: 122 FSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDN 181
           FS  F  AV + L +   ++        G+ +  V  +RN     +F ++  NR+ L  +
Sbjct: 120 FSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPD 179

Query: 182 I 182
           I
Sbjct: 180 I 180

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 58.5 bits (140), Expect = 1e-11
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 10  LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
           ++TG PGVGKTTL+ +++E L         +        +  +R GF ++T + ++   +
Sbjct: 4   IITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---VRDPETKKRTGFRIITTEGKKKIFS 60

Query: 70  SINASSPESYRWPTVGRYKVDVASFEAIALPELQVGA-DTDLFVIDEVGKMELFSSSFFP 128
           S   +S +      V     +  +   +     +       + +IDE+GKMELFS  F  
Sbjct: 61  SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRD 120

Query: 129 AVLRI-LESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI 182
            V +I  + N+ V+A+IP        P V  +R  PGA +  L+P NRD + ++I
Sbjct: 121 LVRQIMHDPNVNVVATIPIRD---VHPLVKEIRRLPGAVLIELTPENRDVILEDI 172

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.3 bits (98), Expect = 8e-06
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 6  GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFE 57
          G+  +++GP  VGK+T++  + E +    P+L      T    + G+  G +
Sbjct: 2  GRVVVLSGPSAVGKSTVVRCLRERI----PNLHFSVSATTRAPRPGEVDGVD 49

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (93), Expect = 4e-05
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 6  GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV 39
          G  ++V+ P G GK++LI  +L++    +  + V
Sbjct: 2  GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 35

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 7  KCFLVTGPPGVGKTTLIMRVLESLKA 32
            + V G    GKTTL+ + + +   
Sbjct: 2  NVWQVVGYKHSGKTTLMEKWVAAAVR 27

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 10 LVTGPPGVGKTTLIMRVLESLKA 32
          +  G  G GKTTL       L+ 
Sbjct: 4  VFVGTAGSGKTTLTGEFGRYLED 26

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 6  GKCFLVTGPPGVGKTTLIMRVLESLKA 32
              LV G    GK+++I   +  L  
Sbjct: 29 APITLVLGLRRTGKSSIIKIGINELNL 55

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 9  FLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRR 65
                 G GKTTL+ +++ +L A       +G   G I+     +  +    D   
Sbjct: 5  LAFAAWSGTGKTTLLKKLIPALCA-------RGIRPGLIKHTHHDMDVDKPGKDSYE 54

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 7  KCFLVTGPPGVGKTTLIMRVLESLK 31
          K +++TGP GVGK+T   R+   L 
Sbjct: 3  KLYIITGPAGVGKSTTCKRLAAQLD 27

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 5  AGKCFLVTGPPGVGKTTLIMRVLESL 30
           G   L++G PG GK+T+   +    
Sbjct: 3  GGNILLLSGHPGSGKSTIAEALANLP 28

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 7  KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFE 57
          K  +VTG PGVG TT     +++L+    + K+  F +       +     
Sbjct: 2  KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS 52

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 10 LVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLA 69
           + G    GK+ L+ ++      ++   +    +  E   G ++                
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSAW-EYGREFVFEKLGGDEQAMQYSDYPQMALGHQR 69

Query: 70 SINASSPESYRWPTVGRYKVDVASF 94
           I+ +   S++   +    +   +F
Sbjct: 70 YIDYAVRHSHKIAFIDTDFITTQAF 94

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 7  KCFLVTGPPGVGKTTLIMRVLESLKASN 34
          K  +VTG PGVGK+T++ +V E L    
Sbjct: 2  KIGIVTGIPGVGKSTVLAKVKEILDNQG 29

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 1  MAAGAG----KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRV 54
          MA G G    KC +V G   VGKT L+M              V   Y   +  GG++ 
Sbjct: 1  MAHGPGALMLKCVVV-GDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQY 57

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 13/163 (7%)

Query: 7   KCFLVTGPPGVGKTTLIMRVLESLKA-----SNPSLKVQGFYTGEIRQGGQRVGFEVVTL 61
             FL+ G PG GKT+L   + E  +       N + K Q     E+ +  ++   + VT 
Sbjct: 33  TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTP 92

Query: 62  DDRRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPELQ-VGADTDLFVIDEVGKME 120
              R   A I+  S     +  V                 LQ  G +T ++V+       
Sbjct: 93  YSNRMTEAIISRLS--DQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS 150

Query: 121 LFS-----SSFFPAVLRILESNIPVLASIPAPKSGRDIPAVAR 158
                    + +        +       I       ++  + +
Sbjct: 151 YLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHK 193

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 12/86 (13%)

Query: 7  KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
          K  L+ G  GVGK+ L+ R                F        G       + +D +  
Sbjct: 6  KVVLI-GDSGVGKSNLLSRFTR-----------NEFNLESKSTIGVEFATRSIQVDGKTI 53

Query: 67 PLASINASSPESYRWPTVGRYKVDVA 92
               + +  E YR  T   Y+  V 
Sbjct: 54 KAQIWDTAGQERYRRITSAYYRGAVG 79

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 7  KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG 41
              + G PG GKT  + ++ E  K    +  V  
Sbjct: 44 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI 78

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 6  GKCFLVTGPPGVGKTTLIMRVLESLK 31
           K  ++ G  GVG+  +   ++    
Sbjct: 3  RKTLVLLGAHGVGRRHIKNTLITKHP 28

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 5/41 (12%), Positives = 13/41 (31%)

Query: 5  AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTG 45
            +  ++ G    GK+ ++  +   L     +  V      
Sbjct: 2  TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 11 VTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVG 55
          ++GP G GK+TL+ ++         S       T    + G+  G
Sbjct: 6  ISGPSGTGKSTLLKKLFAEYPD---SFGFSVSSTTRTPRAGEVNG 47

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 7  KCFLVTGPPGVGKTTLIMRVLESLK 31
          K  L  G PG GK+T     +    
Sbjct: 3  KIILTIGCPGSGKSTWAREFIAKNP 27

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 12/82 (14%)

Query: 7  KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRA 66
          K  ++ G  GVGK+ L+ +  E           + F        G   G  ++ +  ++ 
Sbjct: 6  KYIII-GDMGVGKSCLLHQFTE-----------KKFMADCPHTIGVEFGTRIIEVSGQKI 53

Query: 67 PLASINASSPESYRWPTVGRYK 88
           L   + +  E +R  T   Y+
Sbjct: 54 KLQIWDTAGQERFRAVTRSYYR 75

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 11 VTGPPGVGKTTLIMRVLESLKASNPSL 37
          +TG PGVGK+T I  +   L A+   +
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKV 82

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)

Query: 6  GKCFLVTGPPGVGKTTLIMRVLE 28
          GK   + G    GKTTL+  +  
Sbjct: 1  GKLLFL-GLDNAGKTTLLHMLKN 22

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 6  GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQG 50
          G   ++ G    GK+T   +++E+L A+    ++  F       G
Sbjct: 3  GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIG 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.98
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.95
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.85
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.53
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	99.47
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.19
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.84
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.56
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.56
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.46
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.4
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.35
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.26
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.25
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.2
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.18
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.14
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.14
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.11
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.1
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.07
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.05
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.03
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.02
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.99
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.99
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.99
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.98
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.96
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.95
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.94
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.93
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.93
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.91
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.89
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.89
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.85
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.85
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.82
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.81
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.8
d1okkd2	207	GTPase domain of the signal recognition particle r	97.79
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.79
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.78
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.78
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.75
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.74
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.73
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.7
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.69
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.67
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.65
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.65
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.65
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.65
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.64
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.64
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.64
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.61
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.61
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.6
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.58
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.58
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.57
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.57
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.57
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.56
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.56
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.56
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.56
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.56
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.55
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.55
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.54
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.54
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.53
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.52
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.52
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.51
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.51
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.51
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.5
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.49
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.48
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.48
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.47
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.46
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.44
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.43
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.42
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.42
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.41
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.39
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.38
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.37
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.37
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.36
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.35
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.34
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.32
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.31
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.3
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.3
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.3
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.3
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.29
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.28
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.27
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.26
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.26
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.25
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.25
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.24
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.24
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.24
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.23
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.21
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.19
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.19
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.19
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.17
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.17
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.15
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.15
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.15
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.15
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.14
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.13
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.12
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.11
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.1
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.09
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.09
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.07
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.04
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.03
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.03
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.02
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.99
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.99
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.96
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.94
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.91
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.91
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.87
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.86
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.85
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.85
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.84
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.84
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.82
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.81
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.8
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.79
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.79
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.79
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.78
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.78
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.73
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.72
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.71
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.71
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.68
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.65
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.64
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.63
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.63
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.61
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.6
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.58
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.58
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.57
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.56
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.54
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.53
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.52
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.51
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.48
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.46
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.37
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.36
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.34
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.32
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.25
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.24
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.22
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	96.17
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.06
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	96.06
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.03
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.96
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.92
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.9
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.88
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.82
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.74
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.73
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.58
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.55
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.53
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.51
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.48
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.45
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.42
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.42
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.18
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.15
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.98
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.89
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.88
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.87
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.86
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.76
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.62
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.38
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.29
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.21
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	94.14
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.93
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.53
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.51
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	93.43
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.37
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.35
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	93.34
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.19
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	93.07
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	93.04
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	92.83
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	92.65
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	92.65
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	92.39
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	92.17
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.12
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.12
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.6
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	90.53
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.43
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	90.04
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	89.37
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	89.15
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	89.11
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	88.94
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	88.67
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	88.25
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.13
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	87.82
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.59
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	87.35
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	86.4
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.33
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	86.0
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.53
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	85.34
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	85.01
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	84.91
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	84.84
d1w25a2	153	Response regulator PleD, receiver domain {Caulobac	84.52
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	84.24
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.08
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	82.93
d1k66a_	149	Response regulator for cyanobacterial phytochrome	82.69
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	82.44
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.42
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	82.41
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	81.8
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	81.71
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	81.69
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	81.07
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	80.74
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	80.54
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	80.18

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.8e-41  Score=262.75  Aligned_cols=172  Identities=12%  Similarity=0.151  Sum_probs=134.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++++||+||++  ++.+++.+|+.+.... 
T Consensus        27 l~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~-  105 (239)
T d1v43a3          27 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI-  105 (239)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHH-
Confidence            6799999999999999999999999999999999999999999866555567899999987  4556788887664432 


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                      ..++......+..++++.+++.++.                    |+.+|++|||||| ++|||.++..+.++++.+. +
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~  185 (239)
T d1v43a3         106 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK  185 (239)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHh
Confidence            2233333334566778888876543                    8999999999999 6999999999999999984 5


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                       |+|||++      |||++++.++||++    +|.++  ..++++++.++
T Consensus       186 ~g~tii~v------THd~~~a~~~~dri~vm~~G~iv--~~G~~~el~~~  227 (239)
T d1v43a3         186 LKVTTIYV------THDQVEAMTMGDRIAVMNRGQLL--QIGSPTEVYLR  227 (239)
T ss_dssp             HTCEEEEE------ESCHHHHHHHCSEEEEEETTEEE--EEECHHHHHHC
T ss_pred             cCCeEEEE------eCCHHHHHHhCCEEEEEECCEEE--EEcCHHHHHhC
Confidence             9999999      99999999999994    34443  33455555443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.1e-41  Score=260.00  Aligned_cols=171  Identities=13%  Similarity=0.125  Sum_probs=121.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++++||+||++  ++.+++.+|+.+... .
T Consensus        21 l~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~-~   99 (232)
T d2awna2          21 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK-L   99 (232)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-----------------
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHH-H
Confidence            6899999999999999999999999999999999999999999866555567899999987  455677888766532 1


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHH-hC
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRIL-ES  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l-~~  136 (193)
                      ...+.....+++.++++.+++.++.                    |+.+|++|||||| ++||+.++..++++++.+ ++
T Consensus       100 ~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~  179 (232)
T d2awna2         100 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR  179 (232)
T ss_dssp             -----CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            2222333334566788888876542                    8899999999999 699999999999999887 44


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                       |+|||++      |||++++.++||++    +|.++.  .++++++.+
T Consensus       180 ~g~tii~v------THd~~~a~~~~dri~vm~~G~iv~--~G~~~el~~  220 (232)
T d2awna2         180 LGRTMIYV------THDQVEAMTLADKIVVLDAGRVAQ--VGKPLELYH  220 (232)
T ss_dssp             SCCEEEEE------ESCHHHHHHHCSEEEEEETTEEEE--EECHHHHHH
T ss_pred             cCCEEEEE------eCCHHHHHHhCCEEEEEECCEEEE--EeCHHHHHh
Confidence             9999999      99999999999994    344433  345555543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.6e-40  Score=256.33  Aligned_cols=170  Identities=14%  Similarity=0.202  Sum_probs=135.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchh-----hccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGE-----IRQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~-----~~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..     .+..++++||+||++  ++.+++.+|+.+
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~  105 (242)
T d1oxxk2          26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF  105 (242)
T ss_dssp             EEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhh
Confidence            5799999999999999999999999999999999999999998742     223356799999987  456788888776


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ... ....+.....+++.++++.+++.+..                    |+.+|++||+||| ++||+.++..+.++++
T Consensus       106 ~l~-~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~  184 (242)
T d1oxxk2         106 PLT-NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK  184 (242)
T ss_dssp             GGT-TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHH
T ss_pred             hhH-hhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHH
Confidence            543 22233333345567888888886543                    8999999999999 6999999999999999


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHH
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLK  179 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~  179 (193)
                      .+. + |+|||++      |||++++.++||++    +|+++.  .++++++.
T Consensus       185 ~l~~~~g~tvi~v------THd~~~~~~~~dri~vm~~G~iv~--~g~~~el~  229 (242)
T d1oxxk2         185 EVQSRLGVTLLVV------SHDPADIFAIADRVGVLVKGKLVQ--VGKPEDLY  229 (242)
T ss_dssp             HHHHHHCCEEEEE------ESCHHHHHHHCSEEEEEETTEEEE--EECHHHHH
T ss_pred             HHHhccCCEEEEE------ECCHHHHHHhCCEEEEEECCEEEE--EcCHHHHH
Confidence            984 5 9999999      99999999999994    344433  33445554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=7.5e-40  Score=253.88  Aligned_cols=153  Identities=12%  Similarity=0.195  Sum_probs=126.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~   78 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++......++++||+||++  ++.+++.+|+.+.....
T Consensus        21 ~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~  100 (229)
T d3d31a2          21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK  100 (229)
T ss_dssp             EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhc
Confidence            6899999999999999999999999999999999999999999865554467899999987  45567777765532211


Q ss_pred             CCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C
Q 029421           79 YRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~  136 (193)
                       ..   ...++..+.++.+++.++.                    |+.+|++|||||| ++||+.++..+.++++.+. +
T Consensus       101 -~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~  176 (229)
T d3d31a2         101 -KI---KDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK  176 (229)
T ss_dssp             -CC---CCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred             -cc---cHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhc
Confidence             11   1223456677777776543                    8999999999999 6999999999999999874 4


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                       |+|||++      |||++++.++||++
T Consensus       177 ~g~tii~v------tHd~~~~~~~~drv  198 (229)
T d3d31a2         177 NKLTVLHI------THDQTEARIMADRI  198 (229)
T ss_dssp             TTCEEEEE------ESCHHHHHHHCSEE
T ss_pred             CCcEEEEE------cCCHHHHHHhCCEE
Confidence             9999999      99999999999993

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-39  Score=254.66  Aligned_cols=162  Identities=15%  Similarity=0.231  Sum_probs=130.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-----ccCCceeeEEEeec--CCcccccccccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-----RQGGQRVGFEVVTL--DDRRAPLASINA   73 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-----~~~~~~ig~~~q~~--~~~~~~~~~~~~   73 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...     ...++++||+||++  .+.+++.+|+.+
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~  105 (240)
T d3dhwc1          26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL  105 (240)
T ss_dssp             EEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHH
Confidence            67999999999999999999999999999999999999999997422     22346799999987  345677777655


Q ss_pred             CCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHH
Q 029421           74 SSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLR  132 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~  132 (193)
                      ... ...++......++.++++.+++.+..                    |+.+|++||+||| ++||+.++..++++++
T Consensus       106 ~l~-~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~  184 (240)
T d3dhwc1         106 PLE-LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK  184 (240)
T ss_dssp             HHH-TTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHH
T ss_pred             HHH-HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHH
Confidence            432 12233333345667888888886543                    8899999999999 6999999999999999


Q ss_pred             HHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEE
Q 029421          133 ILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFT  169 (193)
Q Consensus       133 ~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~  169 (193)
                      .+. + |+|||++      |||++++..+||++    +|.++.
T Consensus       185 ~l~~~~g~tvi~v------THdl~~~~~~~dri~vl~~G~iv~  221 (240)
T d3dhwc1         185 DINRRLGLTILLI------THEMDVVKRICDCVAVISNGELIE  221 (240)
T ss_dssp             HHHHHHCCEEEEE------BSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHhccCCEEEEE------cCCHHHHHHhCCEEEEEECCEEEE
Confidence            885 4 9999999      99999999999993    455543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.6e-39  Score=253.76  Aligned_cols=171  Identities=15%  Similarity=0.188  Sum_probs=133.6

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh------ccCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI------RQGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~------~~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...      ...++++||+||++  ++.+++.+|+.
T Consensus        24 l~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~  103 (240)
T d1g2912          24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA  103 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred             eEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhh
Confidence            67899999999999999999999999999999999999999987322      12356799999987  45567777765


Q ss_pred             CCCCCCCCCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           73 ASSPESYRWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      +.... ...+.....+++.++++.+++.+..                    |+.+|++||+||| +|||+.++..+++++
T Consensus       104 ~~~~~-~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l  182 (240)
T d1g2912         104 FPLKL-RKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL  182 (240)
T ss_dssp             HHHHH-TTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred             hhHHH-cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHH
Confidence            54321 1223333344567788888876543                    8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      +.+. + |.|||++      |||++++.++||++    +|.++..  +.++++.+
T Consensus       183 ~~l~~~~g~tvi~v------THd~~~~~~~~drv~vm~~G~iv~~--G~~~el~~  229 (240)
T d1g2912         183 KKLQRQLGVTTIYV------THDQVEAMTMGDRIAVMNRGVLQQV--GSPDEVYD  229 (240)
T ss_dssp             HHHHHHHTCEEEEE------ESCHHHHHHHCSEEEEEETTEEEEE--ECHHHHHH
T ss_pred             HHHHhccCCEEEEE------cCCHHHHHHhCCEEEEEECCEEEEE--cCHHHHHh
Confidence            8874 5 9999999      99999999999994    3444333  44555543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=7e-39  Score=249.64  Aligned_cols=152  Identities=17%  Similarity=0.266  Sum_probs=127.4

Q ss_pred             cccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeec--CCcccccccccCCCCCCC
Q 029421            2 AAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTL--DDRRAPLASINASSPESY   79 (193)
Q Consensus         2 ~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~~   79 (193)
                      ++. +|+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++++||+||++  ++.+++.+|+.+...   
T Consensus        21 ~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~---   96 (240)
T d2onka1          21 EMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR---   96 (240)
T ss_dssp             EEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT---
T ss_pred             EeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhc---
Confidence            443 58999999999999999999999999999999999999976666678899999987  455788888776532   


Q ss_pred             CCCcccceeeehhhhhhhcccccc--------------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C-
Q 029421           80 RWPTVGRYKVDVASFEAIALPELQ--------------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S-  136 (193)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~l~~~~--------------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~-  136 (193)
                      ........+++.++++.+++.++.                    ++.+|++|+|||| ++||+..+..+.++++.+. + 
T Consensus        97 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~  176 (240)
T d2onka1          97 NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF  176 (240)
T ss_dssp             TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhc
Confidence            122223334567788888887543                    8999999999999 6999999999999999885 4 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      |+|||++      |||++++.++||++
T Consensus       177 g~tvi~v------tHd~~~~~~~adri  197 (240)
T d2onka1         177 DVPILHV------THDLIEAAMLADEV  197 (240)
T ss_dssp             TCCEEEE------ESCHHHHHHHCSEE
T ss_pred             CCeEEEE------eCCHHHHHHhCCEE
Confidence            9999999      99999999999994

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=7.1e-39  Score=253.31  Aligned_cols=171  Identities=13%  Similarity=0.177  Sum_probs=128.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh---------------ccCCceeeEEEeec--CC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI---------------RQGGQRVGFEVVTL--DD   63 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~---------------~~~~~~ig~~~q~~--~~   63 (193)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...               +..++++||+||++  ++
T Consensus        23 ~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~  102 (258)
T d1b0ua_          23 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS  102 (258)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred             eEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhcc
Confidence            68999999999999999999999999999999999999999986321               12346799999987  34


Q ss_pred             cccccccccCCCCCCCCCCcccceeeehhhhhhhccccc---------c------------cCCCCCEEEEecC-CCccc
Q 029421           64 RRAPLASINASSPESYRWPTVGRYKVDVASFEAIALPEL---------Q------------VGADTDLFVIDEV-GKMEL  121 (193)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~------------l~~~p~llllDEp-~~LD~  121 (193)
                      .+++.+++.+.......+..........+.++.+++...         +            |+.+|++||+||| +|||+
T Consensus       103 ~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~  182 (258)
T d1b0ua_         103 HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP  182 (258)
T ss_dssp             TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCH
T ss_pred             chhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCH
Confidence            456666644321111222222233445566676666431         1            8899999999999 69999


Q ss_pred             cccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHH
Q 029421          122 FSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLK  179 (193)
Q Consensus       122 ~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~  179 (193)
                      .++..+.++++.+++ |+|||++      |||++++.++|||+    +|.++  ..++++++.
T Consensus       183 ~~~~~i~~ll~~l~~~g~til~v------tHdl~~~~~~adri~vm~~G~iv--~~g~~~ev~  237 (258)
T d1b0ua_         183 ELVGEVLRIMQQLAEEGKTMVVV------THEMGFARHVSSHVIFLHQGKIE--EEGDPEQVF  237 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEE------CSCHHHHHHHCSEEEEEETTEEE--EEECHHHHH
T ss_pred             HHHHHHHHhhhhhcccCCceEEE------eCCHHHHHHhCCEEEEEECCEEE--EEcCHHHHH
Confidence            999999999999876 9999999      99999999999994    34443  334444443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.8e-38  Score=244.14  Aligned_cols=156  Identities=15%  Similarity=0.227  Sum_probs=120.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc------cCCceeeEEEeec--CCccccccccc
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR------QGGQRVGFEVVTL--DDRRAPLASIN   72 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~------~~~~~ig~~~q~~--~~~~~~~~~~~   72 (193)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....      ..++++||+||++  .+.+++.+|+.
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~  105 (230)
T d1l2ta_          26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE  105 (230)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred             EEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHh
Confidence            679999999999999999999999999999999999999999974321      1235699999987  45567777755


Q ss_pred             CCCCC--CCCCCcccceeeehhhhhhhcccc-c--------c------------cCCCCCEEEEecC-CCccccccchHH
Q 029421           73 ASSPE--SYRWPTVGRYKVDVASFEAIALPE-L--------Q------------VGADTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        73 ~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~-~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~  128 (193)
                      ++...  ..............+.++.+++.+ +        +            |+.+|++||+||| ++||+.++..++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~  185 (230)
T d1l2ta_         106 LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIM  185 (230)
T ss_dssp             HHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHH
Confidence            43211  111122222334556666666643 1        1            8899999999999 699999999999


Q ss_pred             HHHHHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC
Q 029421          129 AVLRILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP  163 (193)
Q Consensus       129 ~ll~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~  163 (193)
                      ++++.+. + |+|||++      |||++.+ ++|||+
T Consensus       186 ~~l~~l~~~~g~tii~v------THd~~~a-~~~drv  215 (230)
T d1l2ta_         186 QLLKKLNEEDGKTVVVV------THDINVA-RFGERI  215 (230)
T ss_dssp             HHHHHHHHTTCCEEEEE------CSCHHHH-TTSSEE
T ss_pred             HHHHHHHHhhCCEEEEE------CCCHHHH-HhCCEE
Confidence            9999984 5 9999999      9999876 799993

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.4e-38  Score=246.18  Aligned_cols=172  Identities=18%  Similarity=0.219  Sum_probs=126.8

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh-ccCCceeeEEEeec--CCcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI-RQGGQRVGFEVVTL--DDRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~-~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~   77 (193)
                      |+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...++.+||+||..  ++.+++.+++.+... 
T Consensus        23 ~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~-  101 (238)
T d1vpla_          23 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG-  101 (238)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHH-
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHH-
Confidence            67999999999999999999999999999999999999999997432 23356799999975  344555555433211 


Q ss_pred             CCCCCcccceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCccccccchHHHHHHHHhC
Q 029421           78 SYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILES  136 (193)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ................++.+++.+.        +            ++.+|+++||||| +|||+.++..+.++++.+++
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~  181 (238)
T d1vpla_         102 FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ  181 (238)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence            0111111111223344444444332        1            8999999999999 69999999999999999876


Q ss_pred             -CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          137 -NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       137 -g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                       |+|||++      |||++++..+||++    +|.++  ..++++++.++
T Consensus       182 ~g~tii~~------tH~l~~~~~~~drv~vl~~G~iv--~~g~~~el~~~  223 (238)
T d1vpla_         182 EGLTILVS------SHNMLEVEFLCDRIALIHNGTIV--ETGTVEELKER  223 (238)
T ss_dssp             TTCEEEEE------ECCHHHHTTTCSEEEEEETTEEE--EEEEHHHHHHH
T ss_pred             cCCEEEEE------eCCHHHHHHhCCEEEEEECCEEE--EEcCHHHHHhc
Confidence             9999999      99999999999994    34443  33456666553

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=8.3e-38  Score=247.03  Aligned_cols=174  Identities=17%  Similarity=0.159  Sum_probs=127.7

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....   ..+..++|+||++  ++.+++.+|+.+..
T Consensus        25 ~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~  104 (254)
T d1g6ha_          25 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE  104 (254)
T ss_dssp             CEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehh
Confidence            689999999999999999999999999999999999999999974322   1234599999987  44567777765432


Q ss_pred             CCCC----------CCCcc--cceeeehhhhhhhccccc--------c------------cCCCCCEEEEecC-CCcccc
Q 029421           76 PESY----------RWPTV--GRYKVDVASFEAIALPEL--------Q------------VGADTDLFVIDEV-GKMELF  122 (193)
Q Consensus        76 ~~~~----------~~~~~--~~~~~~~~~l~~~~l~~~--------~------------l~~~p~llllDEp-~~LD~~  122 (193)
                      ....          .+...  .......+.++.+++...        +            ++.+|++|||||| +|||+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~  184 (254)
T d1g6ha_         105 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG  184 (254)
T ss_dssp             TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHH
T ss_pred             hhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHH
Confidence            1100          01110  111223345555554432        1            8899999999999 699999


Q ss_pred             ccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHHH
Q 029421          123 SSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       123 ~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~~  182 (193)
                      ++..+.++++.+++ |+|||++      |||++++.++||++    +|.++.  .++.+++.+.+
T Consensus       185 ~~~~i~~~i~~l~~~g~til~v------sHdl~~~~~~~Drv~vm~~G~iv~--~g~~~e~~~~~  241 (254)
T d1g6ha_         185 LAHDIFNHVLELKAKGITFLII------EHRLDIVLNYIDHLYVMFNGQIIA--EGRGEEEIKNV  241 (254)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEE------CSCCSTTGGGCSEEEEEETTEEEE--EEESHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEEE------eCcHHHHHHhCCEEEEEeCCEEEE--EecHHHHhhcc
Confidence            99999999999876 9999999      99999999999994    344433  33445555544

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=2e-37  Score=242.80  Aligned_cols=169  Identities=13%  Similarity=0.105  Sum_probs=122.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhc---cCCceeeEEEeec--CCcccccccccCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIR---QGGQRVGFEVVTL--DDRRAPLASINASS   75 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~---~~~~~ig~~~q~~--~~~~~~~~~~~~~~   75 (193)
                      |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+   ..+..++|+||+.  ++.+++.+|..+..
T Consensus        27 ~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~  106 (240)
T d1ji0a_          27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA  106 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHH
Confidence            679999999999999999999999999999999999999999974322   1234588999876  45567777754432


Q ss_pred             CCCCCCCcccceeeehhhhhhh-ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHH
Q 029421           76 PESYRWPTVGRYKVDVASFEAI-ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRI  133 (193)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~-~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~  133 (193)
                      ....  ......+...+.++.+ ++.        .++            ++.+|++|||||| +|||+.++..++++++.
T Consensus       107 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~  184 (240)
T d1ji0a_         107 YNRK--DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK  184 (240)
T ss_dssp             TTCC--CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HhcC--CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHH
Confidence            1111  1111111111222211 111        222            8999999999999 69999999999999999


Q ss_pred             HhC-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHH
Q 029421          134 LES-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLK  179 (193)
Q Consensus       134 l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~  179 (193)
                      +++ |+|||++      |||++++.++||++    +|.++.  .++.+++.
T Consensus       185 l~~~g~til~~------tH~l~~~~~~~drv~vl~~G~iv~--~g~~~el~  227 (240)
T d1ji0a_         185 INQEGTTILLV------EQNALGALKVAHYGYVLETGQIVL--EGKASELL  227 (240)
T ss_dssp             HHHTTCCEEEE------ESCHHHHHHHCSEEEEEETTEEEE--EEEHHHHH
T ss_pred             HHhCCCEEEEE------eCCHHHHHHhCCEEEEEECCEEEE--EcCHHHHh
Confidence            876 9999999      99999999999994    344433  34455554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.6e-34  Score=226.37  Aligned_cols=182  Identities=13%  Similarity=0.138  Sum_probs=125.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...++++||+||++.. ..+..+|+.+....
T Consensus        23 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~  102 (242)
T d1mv5a_          23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG  102 (242)
T ss_dssp             EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheeccccc
Confidence            67999999999999999999999999999999999999999998543  3456789999998732 23455565443211


Q ss_pred             CCCCCcccce-e--eehhhhhhh--cc--------cccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGRY-K--VDVASFEAI--AL--------PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~~-~--~~~~~l~~~--~l--------~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .......... .  ...+....+  ++        ..++            ++.+|++|||||| ++||+.++..+.+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l  182 (242)
T d1mv5a_         103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL  182 (242)
T ss_dssp             CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH
T ss_pred             ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH
Confidence            1100000000 0  000000000  00        0122            7889999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcE--EEEeCCCChhHHHHHHHHHHHHHh
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHPGAT--IFTLSPGNRDSLKDNIYYQLTDAV  190 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~  190 (193)
                      +.+.+|+|||++      ||+++.+. .||++-..  -..+..++.+++.++ ...+++.+
T Consensus       183 ~~l~~~~Tvi~i------tH~l~~~~-~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~  235 (242)
T d1mv5a_         183 DSLMKGRTTLVI------AHRLSTIV-DADKIYFIEKGQITGSGKHNELVAT-HPLYAKYV  235 (242)
T ss_dssp             HHHHTTSEEEEE------CCSHHHHH-HCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHH
T ss_pred             HHHcCCCEEEEE------ECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHH
Confidence            998889999999      99998775 59984211  124566788877764 33344443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=1e-33  Score=221.49  Aligned_cols=171  Identities=14%  Similarity=0.176  Sum_probs=121.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...  ...+++++|+||++. ...+..+|+.+....
T Consensus        24 l~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~  103 (241)
T d2pmka1          24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG  103 (241)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTT
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCcc
Confidence            67999999999999999999999999999999999999999998533  334678999999873 234566676553321


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      .. .....   ......+.++.+  ++.        .++            ++.+|++|||||| ++||+.++..+.+.+
T Consensus       104 ~~-~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l  182 (241)
T d2pmka1         104 MS-VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM  182 (241)
T ss_dssp             CC-HHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHH
T ss_pred             cc-HHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHH
Confidence            10 00000   000001111111  110        111            8899999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      +.+.+|+|+|++      ||+++.+ +.||++    +|.+  +..++.+++.++
T Consensus       183 ~~l~~~~Tvi~i------tH~l~~~-~~~D~i~vl~~G~I--v~~G~~~ell~~  227 (241)
T d2pmka1         183 HKICKGRTVIII------AHRLSTV-KNADRIIVMEKGKI--VEQGKHKELLSE  227 (241)
T ss_dssp             HHHHTTSEEEEE------CSSGGGG-TTSSEEEEEETTEE--EEEECHHHHHHS
T ss_pred             HHHhCCCEEEEE------ECCHHHH-HhCCEEEEEECCEE--EEECCHHHHHhC
Confidence            988789999999      9999877 569984    3444  344566666543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=8.7e-34  Score=223.56  Aligned_cols=172  Identities=17%  Similarity=0.230  Sum_probs=119.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...  ...+++++|+||++.. ..+..+|..+....
T Consensus        36 l~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~  115 (253)
T d3b60a1          36 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE  115 (253)
T ss_dssp             EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcc
Confidence            57999999999999999999999999999999999999999997533  2345679999998732 23344444332211


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      ........   +.....+.++.+  ++.        .++            ++.+|++|||||| ++||+.++..+.+.+
T Consensus       116 ~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l  195 (253)
T d3b60a1         116 EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL  195 (253)
T ss_dssp             CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHH
Confidence            11000000   000011112211  111        111            7889999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      +.+.+++|+|++      |||++.+ +.||++    +|.+  +..++++++.++
T Consensus       196 ~~l~~~~Tvi~i------tH~l~~~-~~~D~v~vl~~G~I--v~~G~~~eLl~~  240 (253)
T d3b60a1         196 DELQKNRTSLVI------AHRLSTI-EQADEIVVVEDGII--VERGTHSELLAQ  240 (253)
T ss_dssp             HHHHTTSEEEEE------CSCGGGT-TTCSEEEEEETTEE--EEEECHHHHHHH
T ss_pred             HHhccCCEEEEE------ECCHHHH-HhCCEEEEEECCEE--EEECCHHHHHhC
Confidence            998889999999      9999877 569984    2333  344566777654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-33  Score=221.75  Aligned_cols=172  Identities=15%  Similarity=0.150  Sum_probs=121.1

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCC-cccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDD-RRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~-~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...  +..+++++|+||++.. ..+..+|+.+....
T Consensus        35 l~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~  114 (251)
T d1jj7a_          35 FTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQ  114 (251)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhcc
Confidence            67999999999999999999999999999999999999999998543  3446789999998832 23555665553221


Q ss_pred             CCCCCccc---ceeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVG---RYKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~---~~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      ........   ......+.++.+  ++.        .++            ++.+|+++||||| ++||+.++..+.+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l  194 (251)
T d1jj7a_         115 KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL  194 (251)
T ss_dssp             CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHH
Confidence            11100000   000011111111  111        122            8899999999999 699999999999999


Q ss_pred             HHHh-C-CCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          132 RILE-S-NIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       132 ~~l~-~-g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      ..+. + |+|+|++      |||+..+ +.||++    +|.+  +..++.+++.++
T Consensus       195 ~~l~~~~~~Tvi~i------tH~l~~~-~~aDrI~vl~~G~i--v~~Gt~~eLl~~  241 (251)
T d1jj7a_         195 YESPERYSRSVLLI------TQHLSLV-EQADHILFLEGGAI--REGGTHQQLMEK  241 (251)
T ss_dssp             HTCGGGGGCEEEEE------CSCHHHH-HTCSEEEEEETTEE--EEEECHHHHHHH
T ss_pred             HHHhhhcCCEEEEE------eCCHHHH-HhCCEEEEEECCEE--EEECCHHHHHhC
Confidence            8875 4 8999999      9999866 569994    3444  344577777665

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=9.9e-33  Score=217.43  Aligned_cols=171  Identities=15%  Similarity=0.201  Sum_probs=120.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecC-CcccccccccCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLD-DRRAPLASINASSPE   77 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~   77 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...+++++|++|++. ...+..+|+.+....
T Consensus        39 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~  118 (255)
T d2hyda1          39 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT  118 (255)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcC
Confidence            57999999999999999999999999999999999999999998543  344678999999873 234666776553221


Q ss_pred             CCCCCcccc---eeeehhhhhhh--ccc--------ccc------------cCCCCCEEEEecC-CCccccccchHHHHH
Q 029421           78 SYRWPTVGR---YKVDVASFEAI--ALP--------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVL  131 (193)
Q Consensus        78 ~~~~~~~~~---~~~~~~~l~~~--~l~--------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll  131 (193)
                      ... .....   .....+.++.+  ++.        .++            ++.+|+++||||| ++||+.++..+.+.+
T Consensus       119 ~~~-~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l  197 (255)
T d2hyda1         119 ATD-EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL  197 (255)
T ss_dssp             CCH-HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             CCH-HHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            100 00000   00000111111  111        111            7789999999999 699999999999999


Q ss_pred             HHHhCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHHH
Q 029421          132 RILESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       132 ~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~~  181 (193)
                      +.+.+++|+|++      ||+++.+ +.||++    +|.+  +..++.+++.++
T Consensus       198 ~~l~~~~TvI~i------tH~~~~~-~~~D~ii~l~~G~i--v~~G~~~eLl~~  242 (255)
T d2hyda1         198 DVLSKDRTTLIV------AHRLSTI-THADKIVVIENGHI--VETGTHRELIAK  242 (255)
T ss_dssp             HHHTTTSEEEEE------CSSGGGT-TTCSEEEEEETTEE--EEEECHHHHHHT
T ss_pred             HHHhcCCEEEEE------eCCHHHH-HhCCEEEEEECCEE--EEECCHHHHHhC
Confidence            988779999999      9999876 569984    3443  333566666654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.2e-32  Score=213.08  Aligned_cols=166  Identities=17%  Similarity=0.197  Sum_probs=113.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhh--ccCCceeeEEEeecCCcc--cccccccCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEI--RQGGQRVGFEVVTLDDRR--APLASINASSP   76 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~--~~~~~~ig~~~q~~~~~~--~~~~~~~~~~~   76 (193)
                      |+|++||+++|+||||||||||+++|+|+. |++|+|.++|+++...  .......+|++|......  +...+..+.. 
T Consensus        20 l~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-   97 (231)
T d1l7vc_          20 GEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-   97 (231)
T ss_dssp             EEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHC-
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhcc-
Confidence            578999999999999999999999999975 6889999999986432  222345678887642211  1121111110 


Q ss_pred             CCCCCCcccceeeehhhhhhhccccc--------c------------cCC-------CCCEEEEecC-CCccccccchHH
Q 029421           77 ESYRWPTVGRYKVDVASFEAIALPEL--------Q------------VGA-------DTDLFVIDEV-GKMELFSSSFFP  128 (193)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~l~~~--------~------------l~~-------~p~llllDEp-~~LD~~~~~~~~  128 (193)
                           ......+...+.++.+++.+.        +            +++       +|++|||||| +|||+.++..+.
T Consensus        98 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~  172 (231)
T d1l7vc_          98 -----HDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD  172 (231)
T ss_dssp             -----SCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHH
T ss_pred             -----chhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHH
Confidence                 011111222333344443322        1            332       6799999999 699999999999


Q ss_pred             HHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCCCcEE--EEeCCCChhHHH
Q 029421          129 AVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHPGATI--FTLSPGNRDSLK  179 (193)
Q Consensus       129 ~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~--~~~~~~~~~~l~  179 (193)
                      ++++.+++ |+|||++      |||++++.++||++...-  ..+..++.+++.
T Consensus       173 ~~i~~l~~~g~tii~v------tHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         173 KILSALCQQGLAIVMS------SHDLNHTLRHAHRAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             HHHHHHHHTTCEEEEC------CCCHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred             HHHHHHHhCCCEEEEE------eCCHHHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence            99999876 9999999      999999999999963221  134455666553

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.97  E-value=1e-31  Score=205.06  Aligned_cols=146  Identities=16%  Similarity=0.227  Sum_probs=99.9

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC--CcccccccccCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD--DRRAPLASINASSPES   78 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~--~~~~~~~~~~~~~~~~   78 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...   +.+++|+||+..  ...+..+++..... .
T Consensus        22 ~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~---~~~i~~~~~~~~~~~~~t~~~~l~~~~~-~   97 (200)
T d1sgwa_          22 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV---KGKIFFLPEEIIVPRKISVEDYLKAVAS-L   97 (200)
T ss_dssp             EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGG---GGGEEEECSSCCCCTTSBHHHHHHHHHH-H
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHh---cCcEEEEeecccCCCCcCHHHHHHHHHH-h
Confidence            57999999999999999999999999999999999999999987543   457899998752  22333333211100 0


Q ss_pred             CCCCcccceeeehhhhhhhccc-------ccc------------cCCCCCEEEEecC-CCccccccchHHHHHHHHh-C-
Q 029421           79 YRWPTVGRYKVDVASFEAIALP-------ELQ------------VGADTDLFVIDEV-GKMELFSSSFFPAVLRILE-S-  136 (193)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~-------~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~-~-  136 (193)
                      .....  ......+.++.+++.       .++            ++.+|+++||||| +|||+.++..+++.+..+. + 
T Consensus        98 ~~~~~--~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~  175 (200)
T d1sgwa_          98 YGVKV--NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK  175 (200)
T ss_dssp             TTCCC--CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH
T ss_pred             cCCcc--CHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCC
Confidence            00000  011122333333322       122            8899999999999 6999999988877777654 4 


Q ss_pred             CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          137 NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       137 g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      +.+||.+      +|++.    +||+
T Consensus       176 ~~~ii~~------~~~l~----~~D~  191 (200)
T d1sgwa_         176 GIVIISS------REELS----YCDV  191 (200)
T ss_dssp             SEEEEEE------SSCCT----TSSE
T ss_pred             CEEEEEE------echhh----hcch
Confidence            6666655      77753    6776

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.8e-29  Score=199.58  Aligned_cols=160  Identities=21%  Similarity=0.227  Sum_probs=105.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecC-CcccccccccCCCCCCC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLD-DRRAPLASINASSPESY   79 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~   79 (193)
                      |+|++|++++|+||||||||||+++|+|+++|++|+|.++|           +++|++|++. ...+..+|+.+......
T Consensus        57 l~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-----------~i~~v~Q~~~l~~~tv~eni~~~~~~~~  125 (281)
T d1r0wa_          57 LNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-----------RVSFCSQFSWIMPGTIKENIIFGVSYDE  125 (281)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-----------CEEEECSSCCCCSEEHHHHHTTTSCCCH
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-----------EEEEEeccccccCceeeccccccccccc
Confidence            57999999999999999999999999999999999999987           4889999762 12355566544321100


Q ss_pred             CCC-cccceeeehhhhhhh--c----c----cccc------------cCCCCCEEEEecC-CCccccccchHHH-HHHHH
Q 029421           80 RWP-TVGRYKVDVASFEAI--A----L----PELQ------------VGADTDLFVIDEV-GKMELFSSSFFPA-VLRIL  134 (193)
Q Consensus        80 ~~~-~~~~~~~~~~~l~~~--~----l----~~~~------------l~~~p~llllDEp-~~LD~~~~~~~~~-ll~~l  134 (193)
                      ... ...........+..+  +    +    ..++            |+.+|++|||||| ++||+.++..+.+ ++..+
T Consensus       126 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~  205 (281)
T d1r0wa_         126 YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL  205 (281)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC
T ss_pred             hHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh
Confidence            000 000000000000000  0    0    0122            8899999999999 6999998766654 34444


Q ss_pred             hCCCcEEEEecCCCCCCChhHHHHHhcCC----CcEEEEeCCCChhHHHH
Q 029421          135 ESNIPVLASIPAPKSGRDIPAVARLRNHP----GATIFTLSPGNRDSLKD  180 (193)
Q Consensus       135 ~~g~tvl~~~~~~~~tHd~~~~~~~~d~~----~~~~~~~~~~~~~~l~~  180 (193)
                      .+|+|+|++      ||+++.+ ++||++    +|.++  ..++.+++..
T Consensus       206 ~~~~tvi~i------tH~~~~l-~~aDrI~vl~~G~i~--~~Gt~~eL~~  246 (281)
T d1r0wa_         206 MANKTRILV------TSKMEHL-RKADKILILHQGSSY--FYGTFSELQS  246 (281)
T ss_dssp             TTTSEEEEE------CSCHHHH-HTCSEEEEEETTEEE--EEECHHHHHH
T ss_pred             hCCCEEEEE------echHHHH-HhCCEEEEEECCEEE--EECCHHHHhc
Confidence            458999999      9998765 679994    34443  3356666654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.85  E-value=3.8e-21  Score=142.08  Aligned_cols=165  Identities=34%  Similarity=0.525  Sum_probs=100.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCcccce
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVGRY   87 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (193)
                      .++|+||||||||||+++|+|.++++.|.+.+.+......   .++.++....................     ......
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~   73 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET---KKRTGFRIITTEGKKKIFSSKFFTSK-----KLVGSY   73 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC---------CCEEEEEETTCCEEEEEETTCCCS-----SEETTE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHH---HHhhhhhhhhhhHHHHHHhhhhhhhh-----hhhhhh
Confidence            4899999999999999999999999999998887654321   22344433322111111111001000     001111


Q ss_pred             eeehhhhhhhc------ccccccCCCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCCh---hHHH
Q 029421           88 KVDVASFEAIA------LPELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDI---PAVA  157 (193)
Q Consensus        88 ~~~~~~l~~~~------l~~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~---~~~~  157 (193)
                      ....+.++..+      .-...+..+|+++++|||+..+.........+.+.+.+ +.++|++      +|+.   ..+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~------~h~~~~~~~~~  147 (178)
T d1ye8a1          74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVAT------IPIRDVHPLVK  147 (178)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEE------CCSSCCSHHHH
T ss_pred             hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEE------EccHHHHHhhc
Confidence            11112221111      00112468999999999965555555666666677776 8999999      6654   3455


Q ss_pred             HHhcCCCcEEEEeCCCChhHHHHHHHHHH
Q 029421          158 RLRNHPGATIFTLSPGNRDSLKDNIYYQL  186 (193)
Q Consensus       158 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~  186 (193)
                      ++..+.++.++.++..|++.+.+++.+.+
T Consensus       148 ~i~~~~~~~i~~v~~~nrd~~~~~i~~~l  176 (178)
T d1ye8a1         148 EIRRLPGAVLIELTPENRDVILEDILSLL  176 (178)
T ss_dssp             HHHTCTTCEEEECCTTTTTTHHHHHHHHS
T ss_pred             eEEEEeCCEEEEECCccHHHHHHHHHHHH
Confidence            66666889999999999998888887654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.4e-12  Score=93.64  Aligned_cols=179  Identities=40%  Similarity=0.642  Sum_probs=99.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceEchhhccCCceeeEEEeecCCcccccccccCCCCCCCCCCcccc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFYTGEIRQGGQRVGFEVVTLDDRRAPLASINASSPESYRWPTVGR   86 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~~~~~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (193)
                      .++.|+||+|+|||||++.++..+....+.+.+.+....  .......++.+....+.......................
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV--RQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQ   79 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE--ETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSS
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccc--cccccccccccccccchhhhhhhhhhhhhhhhhcccccc
Confidence            468999999999999999999999887766655443321  122344555554432211111111111000000000111


Q ss_pred             eeeehhhhhhhccc-----ccccCCCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHh
Q 029421           87 YKVDVASFEAIALP-----ELQVGADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLR  160 (193)
Q Consensus        87 ~~~~~~~l~~~~l~-----~~~l~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~  160 (193)
                      .......++.....     .......++++++||....+.........+...+.. ...++...+.+... .......+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  158 (189)
T d2i3ba1          80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGK-PLALVEEIR  158 (189)
T ss_dssp             SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSS-CCTTHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccccCCcc-hHHHHHHHh
Confidence            11122222222211     111345788999999876666655555544455555 55555554433322 335566777


Q ss_pred             cCCCcEEEEeCCCChhHHHHHHHHHHHH
Q 029421          161 NHPGATIFTLSPGNRDSLKDNIYYQLTD  188 (193)
Q Consensus       161 d~~~~~~~~~~~~~~~~l~~~~~~~~~~  188 (193)
                      .+.+..++.++..+++.+.+++.+.+..
T Consensus       159 ~~~~~~~~~lt~~~Rd~~~~~Il~~~~~  186 (189)
T d2i3ba1         159 NRKDVKVFNVTKENRNHLLPDIVTCVQS  186 (189)
T ss_dssp             TTCCSEEEECCSSSGGGHHHHHHHHHTT
T ss_pred             CCCCCeEEEEChhHhhHHHHHHHHHHHH
Confidence            7788888888888898888888776643

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=2.7e-09  Score=83.83  Aligned_cols=52  Identities=12%  Similarity=0.206  Sum_probs=42.6

Q ss_pred             cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      ....+.++++||| ++|+|.....+.++++....+.-||++      ||+...+ ..+|+
T Consensus       238 ~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~Qviit------THsp~~~-~~~d~  290 (308)
T d1e69a_         238 EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI------THNKIVM-EAADL  290 (308)
T ss_dssp             TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEE------CCCTTGG-GGCSE
T ss_pred             hhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEE------ECCHHHH-Hhccc
Confidence            4467899999999 799999988888888887767889999      9986655 45565

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.2e-07  Score=72.24  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=32.5

Q ss_pred             CCCCCEEEEecC-CCcccccc-chHHHHHHHHh-C-CCcEEEEecCCCCCCChhH
Q 029421          105 GADTDLFVIDEV-GKMELFSS-SFFPAVLRILE-S-NIPVLASIPAPKSGRDIPA  155 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~-~-g~tvl~~~~~~~~tHd~~~  155 (193)
                      +.+..++|+||+ .|-++... ....++++.+. . +..++++      ||....
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~t------TH~~~l  166 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA------THYFEL  166 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE------CSCGGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEe------cchHHH
Confidence            445679999999 59888886 45677787764 4 5678888      666443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.56  E-value=2.9e-08  Score=75.20  Aligned_cols=49  Identities=18%  Similarity=0.229  Sum_probs=37.2

Q ss_pred             CCCCCEEEEecC-CCcccccc-chHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHh
Q 029421          105 GADTDLFVIDEV-GKMELFSS-SFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLR  160 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~-~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~  160 (193)
                      +.+..++|+||+ .|-++... .....+++.+.+ +..++++      ||..+ +..+.
T Consensus       112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~t------TH~~e-L~~l~  163 (224)
T d1ewqa2         112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFA------THYFE-LTALG  163 (224)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEE------CCCHH-HHTCC
T ss_pred             CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEe------eechh-hhhhh
Confidence            355679999999 58888775 577888888877 8889999      88754 33443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=1.1e-07  Score=67.69  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      +++|+|++|||||||++.|+..+....-++-+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v   35 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGL   35 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            79999999999999999999877665444444

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=1e-06  Score=66.58  Aligned_cols=74  Identities=7%  Similarity=0.129  Sum_probs=41.2

Q ss_pred             CCCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhHHHHHHH
Q 029421          105 GADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDSLKDNIY  183 (193)
Q Consensus       105 ~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~l~~~~~  183 (193)
                      ..+..++++||...+.......+..++........+|++      +++.+. ...+.+|.  ..+.+.+.+.+++.+.+.
T Consensus       129 ~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~------tn~~~~i~~~l~sR~--~~i~~~~~~~~~~~~~l~  200 (252)
T d1sxje2         129 AHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV------CDSMSPIIAPIKSQC--LLIRCPAPSDSEISTILS  200 (252)
T ss_dssp             --CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEE------ESCSCSSCHHHHTTS--EEEECCCCCHHHHHHHHH
T ss_pred             CCCceEEEeccccccccccchhhhcccccccccccceee------eccccchhhhhhcch--heeeecccchhhHHHHHH
Confidence            345679999998666555444444444432224456777      555432 22344553  345667777777776665


Q ss_pred             HHH
Q 029421          184 YQL  186 (193)
Q Consensus       184 ~~~  186 (193)
                      ..+
T Consensus       201 ~i~  203 (252)
T d1sxje2         201 DVV  203 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=2.4e-07  Score=67.33  Aligned_cols=26  Identities=31%  Similarity=0.680  Sum_probs=23.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      |.+++|+|||||||||+++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999987764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.25  E-value=3.5e-07  Score=65.31  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=26.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLK   38 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~   38 (193)
                      .+++|+|++|||||||++.|...++....++-
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~   33 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVG   33 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence            37899999999999999999988876543443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=8.8e-06  Score=61.35  Aligned_cols=73  Identities=11%  Similarity=0.128  Sum_probs=42.7

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCCh--hHHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDI--PAVARLRNHPGATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~--~~~~~~~d~~~~~~~~~~~~~~~~l~~~~  182 (193)
                      ....++++||+..+....+.....++..... ...++++      +.+.  ..+..+..+  ...+.+.+++.+++.+.+
T Consensus       122 ~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i------~~~~~~~~~~~l~~~--~~~i~f~~~~~~~i~~~l  193 (253)
T d1sxja2         122 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILI------CNERNLPKMRPFDRV--CLDIQFRRPDANSIKSRL  193 (253)
T ss_dssp             TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEE------ESCTTSSTTGGGTTT--SEEEECCCCCHHHHHHHH
T ss_pred             ccceEEEeeeccccccchhhhhHHHhhhhcccccccccc------cccccccccccccce--eeeeeccccchhHHHHHH
Confidence            3566899999966666666666667666554 5566666      3221  112222222  345677777777777666


Q ss_pred             HHHH
Q 029421          183 YYQL  186 (193)
Q Consensus       183 ~~~~  186 (193)
                      ....
T Consensus       194 ~~i~  197 (253)
T d1sxja2         194 MTIA  197 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.18  E-value=4.6e-07  Score=64.54  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=25.5

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+|.++.|+|++||||||+.+.|+-.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5799999999999999999999997764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=6.1e-07  Score=63.76  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=24.7

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..+.++.|+||+||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            567899999999999999999999875

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.14  E-value=5.3e-07  Score=64.22  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .|++++|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.11  E-value=1.1e-06  Score=62.83  Aligned_cols=33  Identities=36%  Similarity=0.547  Sum_probs=27.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK   38 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~   38 (193)
                      ..+++|.|++||||||+++.|+..+......+.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~   33 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK   33 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence            368999999999999999999988766555443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.10  E-value=9.3e-07  Score=62.87  Aligned_cols=27  Identities=37%  Similarity=0.623  Sum_probs=24.5

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++|-.++|+||+||||||+.+.|+.-+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            568889999999999999999999775

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.07  E-value=1.3e-06  Score=62.01  Aligned_cols=27  Identities=15%  Similarity=0.351  Sum_probs=24.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ...++.|.|++||||||+.+.|+..+.
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            356899999999999999999999874

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=8.9e-07  Score=66.69  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=26.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK   38 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~   38 (193)
                      +|..++++|+||+|||||++.|.+-.....|.|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            5899999999999999999999987666566664

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.05  E-value=4.7e-06  Score=62.28  Aligned_cols=24  Identities=46%  Similarity=0.789  Sum_probs=21.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..+.|.||+|+||||++++++..+
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            357899999999999999999875

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.03  E-value=1.3e-06  Score=62.32  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..++|+||+|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.8e-06  Score=64.18  Aligned_cols=27  Identities=33%  Similarity=0.722  Sum_probs=24.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +|.+++|+||||||||||++.|.-..+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            589999999999999999999886644

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.99  E-value=1.6e-06  Score=60.45  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=19.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      +++.|+||+|||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.99  E-value=1.9e-06  Score=60.77  Aligned_cols=24  Identities=46%  Similarity=0.822  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++.|+||+||||||+.+.|+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.7e-07  Score=63.93  Aligned_cols=27  Identities=41%  Similarity=0.486  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +|.++.|+|++||||||+.+.|+-.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            577999999999999999999988764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.98  E-value=1.6e-06  Score=62.67  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      ++||.||+|||||||.+.|.-.+...
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccc
Confidence            68999999999999999998876643

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=6.7e-06  Score=62.07  Aligned_cols=70  Identities=20%  Similarity=0.292  Sum_probs=43.3

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhC---CCcEEEEecCCCCCCChhHH-HHHhcCCCcEEEEeCCCChhHHHHH
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES---NIPVLASIPAPKSGRDIPAV-ARLRNHPGATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~---g~tvl~~~~~~~~tHd~~~~-~~~~d~~~~~~~~~~~~~~~~l~~~  181 (193)
                      .+.+++|+||...|...++.   .+++.+.+   +..+|++      |++.+.+ ..+.+|-  ..+.+.+.+.+++.+.
T Consensus       114 ~~~kviiIde~d~l~~~~q~---~Llk~lE~~~~~~~~il~------tn~~~~i~~~i~SRc--~~i~~~~~~~~~i~~~  182 (239)
T d1njfa_         114 GRFKVYLIDEVHMLSRHSFN---ALLKTLEEPPEHVKFLLA------TTDPQKLPVTILSRC--LQFHLKALDVEQIRHQ  182 (239)
T ss_dssp             SSSEEEEEETGGGSCHHHHH---HHHHHHHSCCTTEEEEEE------ESCGGGSCHHHHTTS--EEEECCCCCHHHHHHH
T ss_pred             CCCEEEEEECcccCCHHHHH---HHHHHHhcCCCCeEEEEE------cCCccccChhHhhhh--cccccccCcHHHhhhH
Confidence            35679999999767655543   44455543   5566777      6665443 4455552  4556777777777776


Q ss_pred             HHHHH
Q 029421          182 IYYQL  186 (193)
Q Consensus       182 ~~~~~  186 (193)
                      +.+..
T Consensus       183 l~~i~  187 (239)
T d1njfa_         183 LEHIL  187 (239)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=2.3e-06  Score=59.62  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999875

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.94  E-value=2.1e-06  Score=60.70  Aligned_cols=23  Identities=48%  Similarity=0.637  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+||+||||||+.+.|+--+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=3.9e-07  Score=65.97  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +++|+|||||||||++.+|.-.+-+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcC
Confidence            7789999999999999999866543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=1.3e-05  Score=59.51  Aligned_cols=73  Identities=8%  Similarity=0.153  Sum_probs=43.3

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHH-HHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAV-ARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~-~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      ....++++||...+...++..+...+........++++      +++...+ ..+.++-  ..+.+.+.+.+++.+.+.+
T Consensus       100 ~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~------~~~~~~i~~~l~sr~--~~i~~~~~~~~~i~~~l~~  171 (224)
T d1sxjb2         100 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFA------CNQSNKIIEPLQSQC--AILRYSKLSDEDVLKRLLQ  171 (224)
T ss_dssp             TCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEE------ESCGGGSCHHHHTTS--EEEECCCCCHHHHHHHHHH
T ss_pred             cceEEEEEecccccchhHHHHHhhhccccccceeeeec------cCchhhhhhHHHHHH--HHhhhcccchhhhHHHHHH
Confidence            35679999998766666555444444443334555666      5555433 3344442  4567777777777666654


Q ss_pred             HH
Q 029421          185 QL  186 (193)
Q Consensus       185 ~~  186 (193)
                      ..
T Consensus       172 i~  173 (224)
T d1sxjb2         172 II  173 (224)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.91  E-value=5.5e-05  Score=61.40  Aligned_cols=26  Identities=42%  Similarity=0.630  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +-++.++||.||||||++..+...+.
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhc
Confidence            44899999999999999999988764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=2.9e-06  Score=68.37  Aligned_cols=50  Identities=14%  Similarity=0.254  Sum_probs=41.2

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcC
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNH  162 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~  162 (193)
                      .++++++|||| ++||+..+..+.++++.+.. +.-+|++      ||+.. +...||+
T Consensus       353 ~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~i------TH~~~-~~~~ad~  404 (427)
T d1w1wa_         353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVI------SLKNT-MFEKSDA  404 (427)
T ss_dssp             SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEE------CSCHH-HHTTCSE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEE------eCCHH-HHHhccc
Confidence            56789999999 79999998888888887765 6679999      99954 5567776

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.89  E-value=9.1e-07  Score=66.86  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeE
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLK   38 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~   38 (193)
                      +|..++++|+||+|||||++.|.|-.....|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5789999999999999999999987666567665

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.3e-06  Score=61.77  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++||.|++||||||+.+.|+..+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            789999999999999999987763

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=2.2e-05  Score=58.28  Aligned_cols=22  Identities=41%  Similarity=0.819  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 029421            9 FLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.|.||+|+||||++++++..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            7799999999999999999864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.85  E-value=6.3e-06  Score=61.57  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|+|+.|||||||++.|....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            78999999999999999998654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.82  E-value=4.3e-06  Score=60.86  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999985

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=1.1e-05  Score=59.72  Aligned_cols=68  Identities=15%  Similarity=0.160  Sum_probs=41.4

Q ss_pred             CCCCCEEEEecCCCccccccchHHHHHHHHhC---CCcEEEEecCCCCCCChhH-HHHHhcCCCcEEEEeCCCChhHHHH
Q 029421          105 GADTDLFVIDEVGKMELFSSSFFPAVLRILES---NIPVLASIPAPKSGRDIPA-VARLRNHPGATIFTLSPGNRDSLKD  180 (193)
Q Consensus       105 ~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~---g~tvl~~~~~~~~tHd~~~-~~~~~d~~~~~~~~~~~~~~~~l~~  180 (193)
                      ..+.+++++||...|...++   ..+++.+.+   +.-+|++      |++... ...+.+|-  ..+.+.+.+.+++..
T Consensus       106 ~~~~kviIide~d~l~~~a~---n~Llk~lEep~~~~~fIl~------t~~~~~ll~tI~SRc--~~i~~~~~~~~~~~~  174 (207)
T d1a5ta2         106 LGGAKVVWVTDAALLTDAAA---NALLKTLEEPPAETWFFLA------TREPERLLATLRSRC--RLHYLAPPPEQYAVT  174 (207)
T ss_dssp             TSSCEEEEESCGGGBCHHHH---HHHHHHHTSCCTTEEEEEE------ESCGGGSCHHHHTTS--EEEECCCCCHHHHHH
T ss_pred             cCccceEEechhhhhhhhhh---HHHHHHHHhhcccceeeee------ecChhhhhhhhccee--EEEecCCCCHHHHHH
Confidence            35678999999766655543   455555554   4555667      666553 34455563  455666677766665


Q ss_pred             HHH
Q 029421          181 NIY  183 (193)
Q Consensus       181 ~~~  183 (193)
                      .+.
T Consensus       175 ~L~  177 (207)
T d1a5ta2         175 WLS  177 (207)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.80  E-value=5.5e-06  Score=60.23  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ   40 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~   40 (193)
                      +..+++|+||+||||||+.+.|+..+    |-+.++
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~   36 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS   36 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence            45689999999999999999998765    545454

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.79  E-value=1.1e-05  Score=59.95  Aligned_cols=27  Identities=41%  Similarity=0.583  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++.+++++||+|+||||++-.|+..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999988887654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=7.6e-06  Score=59.59  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ   40 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~   40 (193)
                      ++-.+++|+||+||||||+.+.|+..+    |-..++
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is   38 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS   38 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence            455689999999999999999999875    555554

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=6.4e-06  Score=59.82  Aligned_cols=23  Identities=30%  Similarity=0.781  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcc
Q 029421            9 FLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++|+||||||||||++.|+...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999987643

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.78  E-value=5.1e-06  Score=60.56  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=28.2

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ   40 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~   40 (193)
                      +..+.++.|+||+||||||+.+.|+.-+    |-..++
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is   38 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS   38 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence            4578899999999999999999998864    555554

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.75  E-value=9.1e-06  Score=58.88  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=23.8

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++|-.++|+||+||||||..+.|+.-+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            468888999999999999999999654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1e-05  Score=58.53  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ...++|+||||||||||++.|....
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            3579999999999999999988653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.73  E-value=1.1e-05  Score=57.62  Aligned_cols=26  Identities=50%  Similarity=0.704  Sum_probs=22.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      .++.|.|++||||||+.+.|+..+.-
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            36789999999999999999988754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=9.2e-06  Score=59.23  Aligned_cols=22  Identities=32%  Similarity=0.791  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 029421            9 FLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++|+||||||||||++.|+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999997764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.69  E-value=1.1e-05  Score=61.13  Aligned_cols=35  Identities=29%  Similarity=0.553  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      ....+.|.||+|||||||.+.|++.+..  +-+.+++
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence            3456899999999999999999998743  3345543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.67  E-value=1.1e-05  Score=57.13  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 029421            9 FLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++|+|++||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999998876

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=1.3e-05  Score=57.61  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHh
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      +..+++.++|++||||||+.+.++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999998753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.4e-05  Score=57.84  Aligned_cols=27  Identities=19%  Similarity=0.162  Sum_probs=24.5

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +.+|+++.|.||+|||||||+-.++.-
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            678999999999999999999888764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.3e-05  Score=58.09  Aligned_cols=23  Identities=39%  Similarity=0.647  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|+||+||||||..+.|+.-+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998765

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.65  E-value=1e-05  Score=58.61  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..++|+||+||||||+.+.|+--+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            368899999999999999998765

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.64  E-value=1.2e-05  Score=57.21  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.+.|+|++||||||+.+.|+-.+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999998765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.64  E-value=1.1e-05  Score=63.85  Aligned_cols=31  Identities=35%  Similarity=0.549  Sum_probs=26.5

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKASN   34 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~   34 (193)
                      ..|.-+.|+||.|||||||++.|++.++++.
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~  194 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE  194 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence            3455689999999999999999999988754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.64  E-value=1.4e-05  Score=57.17  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+||+||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998775

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=1.4e-05  Score=56.78  Aligned_cols=22  Identities=36%  Similarity=0.727  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|+.|+|||||++.|+|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999875

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=0.00029  Score=57.01  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      -++|+|.+|+|||||++.|.|.-.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            389999999999999999999643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=2e-05  Score=62.40  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ   40 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~   40 (193)
                      .-++||+||+|||||||+..+...+....-+|-+-
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavl   88 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI   88 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeee
Confidence            45799999999999999999988765543345443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.60  E-value=1.7e-05  Score=55.08  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|||||||++.+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.58  E-value=2.7e-05  Score=57.73  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=24.4

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +...++.++||+|+||||++-.|+..+.-
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~   36 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKG   36 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999877653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.58  E-value=1.9e-05  Score=56.80  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+||+||||||+.+.|+.-+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999876

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.57  E-value=2e-05  Score=58.36  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc--CCCCeEEeceE
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA--SNPSLKVQGFY   43 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~--~~G~i~~~g~~   43 (193)
                      .+|.++.|+|.+||||||+.+.|.-.+..  ..-.+.++|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~   63 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   63 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence            47889999999999999999999865432  12345566644

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=1.9e-05  Score=54.72  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.57  E-value=1.7e-05  Score=57.46  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -++||+|++||||||+.+.|.-
T Consensus         4 ~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=2e-05  Score=57.36  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      -+++++|.+||||||+.+.|+..+..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            36899999999999999999977643

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=1.9e-05  Score=55.94  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 029421            9 FLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++|+|++||||||+.+.|+..+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999999776

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.56  E-value=2e-05  Score=55.07  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|||||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.56  E-value=3e-05  Score=57.70  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +..+++++||+|+||||.+-.|+-.+.
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345899999999999999888886653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.56  E-value=1.5e-05  Score=57.09  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|++|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=4e-05  Score=56.91  Aligned_cols=25  Identities=36%  Similarity=0.511  Sum_probs=22.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+++++||+|+||||.+-.|+-.+.
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999988887765

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=1.4e-05  Score=62.77  Aligned_cols=24  Identities=25%  Similarity=0.291  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++||.|++|||||||.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            899999999999999999999885

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.3e-05  Score=57.14  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++|+|++|||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.54  E-value=2.2e-05  Score=56.12  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +++|+|++|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.1e-05  Score=55.02  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      |=-++++|+.|+|||||++.|.|.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            446899999999999999999975

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2.4e-05  Score=55.68  Aligned_cols=22  Identities=36%  Similarity=0.690  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +++|+|.+|+|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999974

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2.5e-05  Score=57.39  Aligned_cols=23  Identities=39%  Similarity=0.657  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|.||+||||||+.+.|+.-+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            89999999999999999998775

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.51  E-value=2.4e-05  Score=57.66  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|-||+||||||..+.|+.-+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999876

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.51  E-value=1.1e-05  Score=58.08  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +||+|++++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.51  E-value=3e-05  Score=57.57  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=18.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ..+++++||+|+||||++-.|+-.+.
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999888886654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.50  E-value=1.9e-05  Score=57.29  Aligned_cols=26  Identities=27%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.-+++|-|+.||||||+++.|+..+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45589999999999999999998765

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.49  E-value=1.4e-05  Score=56.85  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -.++|+|++|||||||++.+.+-
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999999764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=3e-05  Score=55.53  Aligned_cols=23  Identities=43%  Similarity=0.758  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+||+||||||+.+.|+.-+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998775

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=2.8e-05  Score=55.64  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+||+||||||..+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.47  E-value=3.4e-05  Score=55.27  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=22.8

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +..+=.++|+|+.|+|||||++.|+|.
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            344556899999999999999999874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=5e-05  Score=56.10  Aligned_cols=30  Identities=27%  Similarity=0.392  Sum_probs=26.4

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      ++|.+++|-|+-||||||+++.|...+...
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            479999999999999999999998876554

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=3.8e-05  Score=55.10  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=24.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      ..+.|+||.||||||+.+.|+--+    |-..+..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~----g~~~i~~   33 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF----HAAHLAT   33 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh----CCceEec
Confidence            357899999999999999999775    5455543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.43  E-value=3.4e-05  Score=56.71  Aligned_cols=21  Identities=33%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++||+|+.||||||+.+.+..
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=4.4e-05  Score=56.08  Aligned_cols=28  Identities=36%  Similarity=0.490  Sum_probs=25.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +|.+++|-|+.||||||+++.|+..+..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~   28 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQ   28 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999999987654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.42  E-value=7.9e-05  Score=55.21  Aligned_cols=75  Identities=15%  Similarity=0.126  Sum_probs=42.1

Q ss_pred             CCCCEEEEecCC--CccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHHhcCC-CcEEEEeCCCChhHHHHH
Q 029421          106 ADTDLFVIDEVG--KMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARLRNHP-GATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       106 ~~p~llllDEp~--~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~~d~~-~~~~~~~~~~~~~~l~~~  181 (193)
                      .+.+++++|+..  .-++..+..+..++..+.+ |+.+|++...+-...+. ...++.+|. .+.++.+. ++.+...+-
T Consensus        96 ~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~-~~~dL~SRL~~g~~~~i~-p~d~~~~~i  173 (213)
T d1l8qa2          96 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG-VSDRLVSRFEGGILVEIE-LDNKTRFKI  173 (213)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT-SCHHHHHHHHTSEEEECC-CCHHHHHHH
T ss_pred             hhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccc-cchHHHHHhhCceEEEEC-CCcHHHHHH
Confidence            467999999983  3344445667888887765 88888883321111111 123444452 35555664 444444443


Q ss_pred             H
Q 029421          182 I  182 (193)
Q Consensus       182 ~  182 (193)
                      +
T Consensus       174 L  174 (213)
T d1l8qa2         174 I  174 (213)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.41  E-value=5.1e-05  Score=55.08  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .-.++|+||+||||||+.+.|+--+
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.39  E-value=2e-05  Score=56.39  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +||+|.+|+|||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=4.6e-05  Score=56.85  Aligned_cols=26  Identities=42%  Similarity=0.751  Sum_probs=22.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      ..+.+.||+|+||||+.++++..+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCC
Confidence            35889999999999999999987654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.37  E-value=3.6e-05  Score=54.13  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      .++++|+.|||||||++.+.+-
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=8e-05  Score=54.77  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++||+|+.||||||..+.+..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            7899999999999999998754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.36  E-value=0.0001  Score=55.21  Aligned_cols=28  Identities=29%  Similarity=0.417  Sum_probs=24.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKASN   34 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~~   34 (193)
                      ..+.|.||.|+||||+++.++..++...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~   71 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKT   71 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhccc
Confidence            5789999999999999999998876443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=4.9e-05  Score=56.80  Aligned_cols=25  Identities=44%  Similarity=0.744  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ..+.+.||+|+||||+.+++++.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3578999999999999999998753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=5.1e-05  Score=56.32  Aligned_cols=23  Identities=43%  Similarity=0.804  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.|.||+|+||||++++++..+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            47899999999999999999764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.32  E-value=5e-05  Score=53.72  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -.++|+|.+|||||||++.+.+-
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999874

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=4.9e-05  Score=56.29  Aligned_cols=26  Identities=19%  Similarity=0.166  Sum_probs=23.2

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      +++|.++.|.||+|||||||...++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            57899999999999999999887753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=6.1e-05  Score=54.97  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+.|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=3.5e-05  Score=57.37  Aligned_cols=27  Identities=19%  Similarity=0.177  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999998763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.30  E-value=0.0001  Score=52.12  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=25.6

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++|.+++|.|+=|||||||.|.++.-+-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            6899999999999999999999987763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.30  E-value=0.00012  Score=57.69  Aligned_cols=26  Identities=38%  Similarity=0.416  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .-+++|+||.|||||||+..+...+.
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~~   76 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLLT   76 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence            34699999999999999999987543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.29  E-value=2.7e-05  Score=60.51  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      -++||.|++||||||+.+.|...+...
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            389999999999999999998877643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.28  E-value=7.2e-05  Score=58.52  Aligned_cols=26  Identities=38%  Similarity=0.595  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++.-+.++||+|||||+|.|+|+..+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            34567799999999999999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.27  E-value=7.5e-05  Score=56.07  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.++.|.||.|+|||||++.++.-.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            46789999999999999999887654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.26  E-value=7.7e-05  Score=52.44  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|++|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999998753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=8.4e-05  Score=59.50  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=21.6

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHH
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~   27 (193)
                      +..+.+.+|+|||||||||++.+|+
T Consensus        22 f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          22 FGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4445699999999999999999985

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.0001  Score=54.53  Aligned_cols=29  Identities=34%  Similarity=0.476  Sum_probs=25.9

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      .+|.++++-|+-||||||+++.|+..+..
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            36999999999999999999999977754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.25  E-value=6.4e-05  Score=57.28  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .++|+|.+|+|||||++.|.|--
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999999863

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00017  Score=57.54  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=24.5

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhCCCcEEEE
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILESNIPVLAS  143 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~g~tvl~~  143 (193)
                      .+.+++|+||.+-+|..   .+..++..+..+.-+|++
T Consensus       260 l~~d~lIIDEaSmv~~~---l~~~ll~~~~~~~~lILv  294 (359)
T d1w36d1         260 LHLDVLVVDEASMIDLP---MMSRLIDALPDHARVIFL  294 (359)
T ss_dssp             CSCSEEEECSGGGCBHH---HHHHHHHTCCTTCEEEEE
T ss_pred             cccceeeehhhhccCHH---HHHHHHHHhcCCCEEEEE
Confidence            35689999999877743   344555555557778887

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=2.5e-05  Score=55.58  Aligned_cols=23  Identities=13%  Similarity=0.215  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -.++|+|++++|||||++.|.+.
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35999999999999999999775

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=2e-05  Score=55.12  Aligned_cols=22  Identities=41%  Similarity=0.783  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|++|+|||||++.|.|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999986

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00011  Score=56.12  Aligned_cols=26  Identities=38%  Similarity=0.580  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ...-+.|.||+|||||++.+.|+..+
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            34568899999999999999999875

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.21  E-value=0.00014  Score=54.07  Aligned_cols=28  Identities=36%  Similarity=0.465  Sum_probs=24.6

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|.++.|.||+|||||||+.-++--.
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998876553

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0001  Score=52.18  Aligned_cols=21  Identities=38%  Similarity=0.743  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|++|+|||||++.+.+-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998763

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.19  E-value=8.5e-05  Score=55.38  Aligned_cols=26  Identities=27%  Similarity=0.172  Sum_probs=22.9

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      +++|.++.|.||+|||||||.-.++-
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            57899999999999999999876653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00011  Score=54.70  Aligned_cols=27  Identities=19%  Similarity=0.022  Sum_probs=24.3

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +++|.++.|.||+|||||||...++..
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999888753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.17  E-value=0.00011  Score=51.94  Aligned_cols=21  Identities=33%  Similarity=0.686  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|++|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.17  E-value=9.4e-05  Score=52.95  Aligned_cols=22  Identities=32%  Similarity=0.208  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+..||||||++.|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4899999999999999999875

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.15  E-value=0.00014  Score=55.39  Aligned_cols=27  Identities=30%  Similarity=0.497  Sum_probs=24.0

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +.+|+++.|.|++|+|||||+.-++--
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            568999999999999999998888743

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00015  Score=55.44  Aligned_cols=27  Identities=37%  Similarity=0.559  Sum_probs=23.7

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ....-+.|.||+|+|||+|++.+++.+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            445668899999999999999999985

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.15  E-value=0.0001  Score=54.42  Aligned_cols=28  Identities=21%  Similarity=0.226  Sum_probs=24.7

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +.+|+++.|.|++|+|||||.--++--.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998887543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.15  E-value=0.00011  Score=55.61  Aligned_cols=23  Identities=39%  Similarity=0.681  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -+.|.||+|||||++.+.|+...
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhcc
Confidence            47899999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.14  E-value=0.00012  Score=53.75  Aligned_cols=25  Identities=36%  Similarity=0.607  Sum_probs=22.0

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHH
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~   27 (193)
                      +++|+++.|.|++|+|||||+.-++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            6799999999999999999986543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00012  Score=51.94  Aligned_cols=21  Identities=33%  Similarity=0.657  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|++|+|||||++.+.+-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.12  E-value=6.1e-05  Score=59.29  Aligned_cols=27  Identities=30%  Similarity=0.305  Sum_probs=24.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      |..+.|.||.|+|||||+|.+++++++
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence            346899999999999999999999976

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00012  Score=51.45  Aligned_cols=21  Identities=33%  Similarity=0.778  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|++|+|||||++.+.+-
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            799999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00014  Score=56.27  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++||.|+.|||||||.+.|.-.+
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            89999999999999998886554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.09  E-value=0.00021  Score=54.04  Aligned_cols=24  Identities=50%  Similarity=0.725  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .-+.+.||+|+|||+|.+.|+..+
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHc
Confidence            458999999999999999999874

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00014  Score=50.94  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|++|+|||||++.+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998775

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.00021  Score=51.84  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      +++|-|.-||||||+++.|...+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999987654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00017  Score=51.05  Aligned_cols=21  Identities=29%  Similarity=0.792  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|++|+|||||++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00016  Score=50.75  Aligned_cols=21  Identities=43%  Similarity=0.831  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|++|+|||||++.+.+-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.03  E-value=0.0001  Score=52.15  Aligned_cols=21  Identities=33%  Similarity=0.476  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -++++|+.|+|||||++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998854

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00017  Score=50.92  Aligned_cols=21  Identities=33%  Similarity=0.672  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -++|+|.+|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999998865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00017  Score=51.54  Aligned_cols=20  Identities=45%  Similarity=0.758  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++|+|+.|+|||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00018  Score=50.78  Aligned_cols=21  Identities=38%  Similarity=0.680  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998763

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.0003  Score=53.41  Aligned_cols=25  Identities=36%  Similarity=0.602  Sum_probs=21.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..-+.|.||+|+|||++++.++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            3458899999999999999999873

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00019  Score=50.45  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+.|+|||||++.+.+-
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0002  Score=50.45  Aligned_cols=20  Identities=40%  Similarity=0.765  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|..|+|||||++.+.+
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00022  Score=50.03  Aligned_cols=21  Identities=33%  Similarity=0.635  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++|+|+.|+|||||++.+.+-
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00022  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.702  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++|+|.+|+|||||++.+.+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988754

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.96  E-value=0.00022  Score=50.90  Aligned_cols=20  Identities=35%  Similarity=0.704  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|.+|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.96  E-value=0.00023  Score=52.93  Aligned_cols=22  Identities=36%  Similarity=0.339  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +++|+|..+||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            6999999999999999999876

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00022  Score=50.21  Aligned_cols=21  Identities=38%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|+.|+|||||++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            789999999999999998765

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.94  E-value=0.00014  Score=54.74  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++.|.||+|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            355679999999999999998763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00023  Score=49.77  Aligned_cols=21  Identities=38%  Similarity=0.618  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|..|+|||||++.+.+-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00034  Score=49.39  Aligned_cols=20  Identities=35%  Similarity=0.669  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|++|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999988765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00027  Score=49.61  Aligned_cols=20  Identities=35%  Similarity=0.707  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++|+|.+|+|||||++.+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00027  Score=49.34  Aligned_cols=20  Identities=40%  Similarity=0.584  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|..|+|||||++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00029  Score=49.49  Aligned_cols=20  Identities=40%  Similarity=0.629  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++|+|.+|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00027  Score=50.13  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|++|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0003  Score=49.90  Aligned_cols=21  Identities=38%  Similarity=0.843  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|..|+|||||++.+.+-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.85  E-value=0.00031  Score=52.29  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++||+|+-||||||..+.|..-
T Consensus         3 iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00028  Score=50.94  Aligned_cols=21  Identities=38%  Similarity=0.787  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++|+|+.|+|||||++.+.+-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999988753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00047  Score=52.60  Aligned_cols=41  Identities=22%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC-eEEeceE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS-LKVQGFY   43 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~-i~~~g~~   43 (193)
                      ++.|.++-|.||+|||||||+-.++.......|. ++++.+.
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            5689999999999999999987777665433344 5555544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.84  E-value=0.00069  Score=48.55  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=24.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      .|.-+.|.|++|+|||||.-.+..     .|.-.+.+
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~-----~G~~lvaD   45 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN-----KNHLFVGD   45 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-----TTCEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-----cCCceecC
Confidence            467789999999999999866643     46655544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00031  Score=49.58  Aligned_cols=21  Identities=43%  Similarity=0.806  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|..|+|||||++.+.+-
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00036  Score=49.07  Aligned_cols=21  Identities=38%  Similarity=0.748  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|+.|+|||||++.+.+-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00033  Score=49.53  Aligned_cols=21  Identities=33%  Similarity=0.662  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -++|+|..|+|||||++.+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998775

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.80  E-value=0.00046  Score=50.95  Aligned_cols=28  Identities=18%  Similarity=0.343  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH-HhhcccCCC
Q 029421            8 CFLVTGPPGVGKTTLIMRV-LESLKASNP   35 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i-~gl~~~~~G   35 (193)
                      -+.|+|.+|+|||||++.+ .+-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            4789999999999999987 444567777

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00033  Score=49.55  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 029421            9 FLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++++|..|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            7899999999999999998653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00038  Score=48.93  Aligned_cols=22  Identities=23%  Similarity=0.622  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|..|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.79  E-value=0.0002  Score=51.03  Aligned_cols=21  Identities=38%  Similarity=0.593  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -++++|++|+|||||++.+.+
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999998743

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00039  Score=53.71  Aligned_cols=33  Identities=30%  Similarity=0.519  Sum_probs=28.3

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      +.|.+|+..+|.|++|+|||||+..|+.-...+
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            357899999999999999999999998765544

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.78  E-value=0.0027  Score=42.23  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             ccCCCEEEEEcCCCCcHHHHH-HHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLI-MRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl-~~i~gl~   30 (193)
                      +++|+.+.|.+|.|||||+.+ ..+....
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence            578999999999999999544 3444443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00038  Score=48.94  Aligned_cols=21  Identities=29%  Similarity=0.724  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|..|+|||||++.+.+-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00038  Score=49.63  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -++|+|.+|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.73  E-value=0.00051  Score=54.78  Aligned_cols=29  Identities=34%  Similarity=0.440  Sum_probs=26.0

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ++++..+.+.||+|+||||+.+.|++.+.
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            46678999999999999999999999874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00045  Score=48.57  Aligned_cols=20  Identities=40%  Similarity=0.777  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            79999999999999998765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00046  Score=48.58  Aligned_cols=20  Identities=35%  Similarity=0.743  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|..|+|||||++.+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999998876

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.71  E-value=0.00019  Score=50.73  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -++++|++|+|||||++.+.+
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999998864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.71  E-value=0.00056  Score=48.58  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=23.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcccCCC
Q 029421            9 FLVTGPPGVGKTTLIMRVLESLKASNP   35 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~~~~~G   35 (193)
                      ++++|..|+|||||++.+.....|+.|
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            789999999999999998776667766

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.00046  Score=56.50  Aligned_cols=24  Identities=38%  Similarity=0.625  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      -+.++||+|||||-|.|.|++.+.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999873

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.65  E-value=0.00058  Score=48.96  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEec
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQG   41 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g   41 (193)
                      .|.-+.|+|++|+|||||.-.+..     .|.-.+.+
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~-----~g~~lv~D   44 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ-----RGHRLIAD   44 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH-----TTCEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH-----cCCeEEec
Confidence            366789999999999999866543     36555543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.64  E-value=0.00055  Score=48.12  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -++|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00057  Score=47.85  Aligned_cols=21  Identities=33%  Similarity=0.694  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|.+|+|||||++.+..-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999988753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.00029  Score=49.83  Aligned_cols=20  Identities=45%  Similarity=0.797  Sum_probs=8.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00057  Score=51.58  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=23.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -+|+++.|.|++|+|||||+-.|+--+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            369999999999999999998887543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00061  Score=48.45  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|+.|+|||||++.+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00026  Score=49.98  Aligned_cols=20  Identities=40%  Similarity=0.693  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|+.|+|||||++.+++
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987643

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00059  Score=48.74  Aligned_cols=20  Identities=40%  Similarity=0.566  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++|+|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999988764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.57  E-value=0.00088  Score=51.17  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=30.8

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC-eEEece
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS-LKVQGF   42 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~-i~~~g~   42 (193)
                      ++.|.++-+.||+|||||||+-.++....-..|. +++|.+
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            5689999999999999999998887775544444 445544

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.56  E-value=0.00095  Score=51.00  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhcccCCCC-eEEeceE
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESLKASNPS-LKVQGFY   43 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~-i~~~g~~   43 (193)
                      ++.|.++-+.||+|||||||+-.++.......|. |++|.+.
T Consensus        57 ~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             BCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            5789999999999999999976666554444444 4555544

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.0006  Score=48.79  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh--cccCCC
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES--LKASNP   35 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl--~~~~~G   35 (193)
                      -+.|+|.+|+|||||++.+.-.  ..||-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            3789999999999999998432  235555

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00065  Score=48.73  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|+.|+|||||++.+.+-
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.52  E-value=0.0013  Score=47.79  Aligned_cols=26  Identities=15%  Similarity=0.188  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+..+.+.||+|+||||+.+.++..+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00068  Score=48.22  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029421            9 FLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++++|.+|+|||||++.+..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999987765

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.00052  Score=50.89  Aligned_cols=22  Identities=45%  Similarity=0.637  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++.|+|.=|||||||++-+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            7899999999999999988763

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00083  Score=49.72  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+++|=|+-||||||+++.|+-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            5799999999999999999998764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.37  E-value=0.00097  Score=47.42  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=19.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~   27 (193)
                      .|.-+.|.|++|+||||+.-.+.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            46678999999999999875554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.36  E-value=0.0012  Score=50.99  Aligned_cols=27  Identities=30%  Similarity=0.438  Sum_probs=23.4

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ..+--+||+|.+.||||||++.+++.-
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            345569999999999999999999863

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0011  Score=51.65  Aligned_cols=23  Identities=43%  Similarity=0.849  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      .+.++||+|+|||.|.+.|+..+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhc
Confidence            68899999999999999999885

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.32  E-value=0.0017  Score=50.85  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++.+.||+|+|||.|.+.|++.+
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHh
Confidence            55668999999999999999875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00084  Score=51.52  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++|+||-++||||||+.|.|..
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            79999999999999999999853

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.0024  Score=48.82  Aligned_cols=29  Identities=34%  Similarity=0.496  Sum_probs=25.0

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +.+.+|+..+|.|++|+|||||+..++.-
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            35778999999999999999998877654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.22  E-value=0.0013  Score=47.37  Aligned_cols=22  Identities=27%  Similarity=0.217  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 029421            9 FLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +|++|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999998753

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=96.17  E-value=0.043  Score=37.15  Aligned_cols=24  Identities=42%  Similarity=0.480  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHH-HHHHHHhh
Q 029421            6 GKCFLVTGPPGVGKTT-LIMRVLES   29 (193)
Q Consensus         6 Ge~~~l~GpnGsGKST-Ll~~i~gl   29 (193)
                      |.+..++||=.||||| |++.+-..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            7788999999999999 77776554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0017  Score=46.15  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +.++|..|+|||||++.+..-
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998655

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0016  Score=52.24  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=29.9

Q ss_pred             CCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEEecCCCCCCChhHHHHH
Q 029421          108 TDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLASIPAPKSGRDIPAVARL  159 (193)
Q Consensus       108 p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~~~~~~~tHd~~~~~~~  159 (193)
                      |-++++||...+-.  ...+..++...++ |..++++      ++++..+...
T Consensus       277 ~v~l~lDE~~~~~~--~~~l~~~l~~~Rk~Gv~~~l~------~Qs~~ql~~~  321 (433)
T d1e9ra_         277 RLWLFIDELASLEK--LASLADALTKGRKAGLRVVAG------LQSTSQLDDV  321 (433)
T ss_dssp             CEEEEESCGGGSCB--CSSHHHHHHHCTTTTEEEEEE------ESCHHHHHHH
T ss_pred             ceEEEechHhhhcc--cHHHHHHHHHhCCCCceEEEE------eccHHHHHHH
Confidence            34688899832211  1236677777777 9999999      8888776543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.03  E-value=0.0014  Score=50.74  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +||+|.+-+|||||++.|.|.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            799999999999999999886

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.96  E-value=0.0017  Score=49.95  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -++++|.-.||||||++.|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999964

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.92  E-value=0.0023  Score=46.62  Aligned_cols=22  Identities=27%  Similarity=0.135  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|..++|||||+..|...
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3899999999999999999654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.90  E-value=0.0024  Score=48.62  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ..+++|.|.-|.|||||.+.+..-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.88  E-value=0.002  Score=49.05  Aligned_cols=22  Identities=36%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++|+|+.|+|||||+..|+..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            4799999999999999999644

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.82  E-value=0.002  Score=49.35  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 029421            9 FLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++++|.-.||||||++.|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999964

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.74  E-value=0.0029  Score=48.18  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhh
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      --+||+|-+-+|||||++.|++.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999999975

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.73  E-value=0.0043  Score=48.67  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCC
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASN   34 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~   34 (193)
                      .|.|=|+-||||||+++.|+..+....
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCC
Confidence            578899999999999999998876543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0037  Score=45.28  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=21.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .-+.|+||+|.|||+++.-++..+.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH
Confidence            4678999999999999999987653

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0036  Score=47.61  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=21.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .-+.|+||+|+|||++++-++..+.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH
Confidence            4578999999999999999987654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.53  E-value=0.0039  Score=49.50  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -+.++||+|+|||-|.|.|+..+
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeeeCCCCccHHHHHHHHHhhc
Confidence            36788999999999999999875

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.51  E-value=0.0048  Score=47.09  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=26.2

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      +.+.+|+.++|.|++|+|||+|+..+.--...+
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~   94 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQ   94 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTT
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhhhccc
Confidence            357799999999999999999998765443333

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.48  E-value=0.0038  Score=45.21  Aligned_cols=23  Identities=30%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -++++|.-.+|||||+..|.|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            59999999999999999998754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.45  E-value=0.0041  Score=48.32  Aligned_cols=23  Identities=48%  Similarity=0.784  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++.++||+|+|||.+.+.|+..+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            67899999999999999999886

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.0036  Score=47.82  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=19.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH
Q 029421            7 KCFLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~   27 (193)
                      .-++|+|..|||||||+..|+
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            358999999999999999995

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.42  E-value=0.0061  Score=46.25  Aligned_cols=27  Identities=22%  Similarity=0.453  Sum_probs=23.9

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++-.++.+.||.++|||||+++|+.++
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344588999999999999999999997

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.18  E-value=0.0046  Score=48.44  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEe
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQ   40 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~   40 (193)
                      .|+|=|+-||||||+++.|+..+......+.+-
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~   39 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI   39 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence            588999999999999999998776543344443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.15  E-value=0.0061  Score=44.02  Aligned_cols=24  Identities=29%  Similarity=0.235  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      -++++|.-++|||||+..|.+...
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~~   28 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKILA   28 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHHH
Confidence            389999999999999999987653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.98  E-value=0.0055  Score=46.86  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHhh
Q 029421            8 CFLVTGPPGVGKTTLI-MRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl-~~i~gl   29 (193)
                      .+.|.|+.||||||.+ ..++-+
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~l   48 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYL   48 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHH
Confidence            5778999999999654 444444

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.89  E-value=0.0069  Score=46.40  Aligned_cols=27  Identities=26%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             CcccCCCEEEEEcCCCCcHHHHHHHHH
Q 029421            1 MAAGAGKCFLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         1 l~i~~Ge~~~l~GpnGsGKSTLl~~i~   27 (193)
                      +.+-+|+.++|.|+.|+|||||+..++
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            467899999999999999999987554

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.88  E-value=0.0062  Score=46.06  Aligned_cols=34  Identities=9%  Similarity=0.142  Sum_probs=21.7

Q ss_pred             CCCCEEEEecCCCccccccchHHHHHHHHhC-CCcEEEE
Q 029421          106 ADTDLFVIDEVGKMELFSSSFFPAVLRILES-NIPVLAS  143 (193)
Q Consensus       106 ~~p~llllDEp~~LD~~~~~~~~~ll~~l~~-g~tvl~~  143 (193)
                      .+.+++++||.--+++..    ..++..+.. +..++++
T Consensus       205 ~~~~~i~vDE~QD~~~~~----~~~l~~~~~~~~~~~~~  239 (306)
T d1uaaa1         205 NKIRYLLVDEYQDTNTSQ----YELVKLLVGSRARFTVV  239 (306)
T ss_dssp             TTCSEEEESCGGGCBHHH----HHHHHHHHTTTCCEEEE
T ss_pred             HHhhHHHHHHHHHhhHHH----HhhhhhcccCCCcceEe
Confidence            478999999985555433    344444444 6677766

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.87  E-value=0.0067  Score=47.11  Aligned_cols=18  Identities=44%  Similarity=0.641  Sum_probs=16.8

Q ss_pred             CCCEEEEEcCCCCcHHHH
Q 029421            5 AGKCFLVTGPPGVGKTTL   22 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTL   22 (193)
                      .|++..+.|.||+|||||
T Consensus        13 ~~~valffGLSGTGKTTL   30 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTL   30 (318)
T ss_dssp             TCCEEEEEECTTSCHHHH
T ss_pred             CCCEEEEEccCCCCcccc
Confidence            589999999999999997

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.0071  Score=46.82  Aligned_cols=20  Identities=40%  Similarity=0.527  Sum_probs=17.7

Q ss_pred             cCCCEEEEEcCCCCcHHHHH
Q 029421            4 GAGKCFLVTGPPGVGKTTLI   23 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl   23 (193)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            36899999999999999974

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.76  E-value=0.0063  Score=47.59  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .|+|=|+-||||||+++.|+..+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            588999999999999999986653

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.015  Score=38.64  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      ++|=.+.+.|-+||||||+.+.|.-.+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            578889999999999999999995444

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.38  E-value=0.011  Score=45.87  Aligned_cols=19  Identities=42%  Similarity=0.574  Sum_probs=17.7

Q ss_pred             CCCEEEEEcCCCCcHHHHH
Q 029421            5 AGKCFLVTGPPGVGKTTLI   23 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl   23 (193)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6899999999999999995

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.29  E-value=0.012  Score=43.16  Aligned_cols=21  Identities=38%  Similarity=0.532  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      -++++|.-++|||||+..|..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            389999999999999998854

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.21  E-value=0.015  Score=42.12  Aligned_cols=28  Identities=21%  Similarity=0.506  Sum_probs=24.5

Q ss_pred             ccCCCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +++-.++.+.||.++|||++...|+..+
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            3455789999999999999999999886

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=94.14  E-value=0.016  Score=42.63  Aligned_cols=21  Identities=48%  Similarity=0.656  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|.-.+|||||+..|+..
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~   32 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHD   32 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            699999999999999999765

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.93  E-value=0.01  Score=44.78  Aligned_cols=28  Identities=29%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             ccCCCEEEEEcCCCCcHHH--HHHHHHhhc
Q 029421            3 AGAGKCFLVTGPPGVGKTT--LIMRVLESL   30 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKST--Ll~~i~gl~   30 (193)
                      +.+|+.+.|.+|.|||||+  |..++....
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5689999999999999996  335444433

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.53  E-value=0.015  Score=38.76  Aligned_cols=32  Identities=25%  Similarity=0.244  Sum_probs=21.5

Q ss_pred             CCCCCEEEEecCCCccccccchHHHHHHHHhC
Q 029421          105 GADTDLFVIDEVGKMELFSSSFFPAVLRILES  136 (193)
Q Consensus       105 ~~~p~llllDEp~~LD~~~~~~~~~ll~~l~~  136 (193)
                      ..+-+++|+||.-.++..+...+..+++.++.
T Consensus        92 ~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~  123 (136)
T d1a1va1          92 GGAYDIIICDECHSTDATSILGIGTVLDQAET  123 (136)
T ss_dssp             GCCCSEEEEETTTCCSHHHHHHHHHHHHHTTT
T ss_pred             hhcCCEEEEecccccCHHHHHHHHHHHHHHHH
Confidence            45779999999965665544445566666554

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.51  E-value=0.047  Score=40.54  Aligned_cols=28  Identities=29%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhccc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKA   32 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~   32 (193)
                      ...-+.|.|+.|+||+++.+.|...-..
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~   49 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDR   49 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCC
Confidence            3566899999999999999999865433

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.43  E-value=0.024  Score=48.70  Aligned_cols=28  Identities=32%  Similarity=0.538  Sum_probs=24.4

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+.+.+.|.|.||||||+-.|.|+..+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3568999999999999999999988764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.37  E-value=0.025  Score=42.63  Aligned_cols=25  Identities=40%  Similarity=0.521  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhc
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      +-.++++|-+-+|||||++.|.|--
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEEecCccchhhhhhhhhccc
Confidence            3458999999999999999999853

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.35  E-value=0.019  Score=45.73  Aligned_cols=23  Identities=30%  Similarity=0.606  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESL   30 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~   30 (193)
                      -..|+||+|+|||+++.-++.-+
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999998887653

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=93.34  E-value=0.025  Score=48.31  Aligned_cols=28  Identities=25%  Similarity=0.625  Sum_probs=24.2

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+.+.+.|.|.||||||+-.|.|...+.
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999987664

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.19  E-value=0.021  Score=41.85  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=19.2

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHH
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~   27 (193)
                      -+|+-+.+++|.|+|||+..-+.+
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHH
Confidence            368889999999999998654443

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.07  E-value=0.029  Score=48.12  Aligned_cols=28  Identities=32%  Similarity=0.488  Sum_probs=24.1

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+.+.+.|.|.||||||+-.|.|+..+.
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999987763

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.04  E-value=0.027  Score=41.77  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      -++++|..++|||||+..|+-.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~   29 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYK   29 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4899999999999999988643

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.83  E-value=0.027  Score=40.16  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=17.1

Q ss_pred             ccCCCEEEEEcCCCCcHHHHH
Q 029421            3 AGAGKCFLVTGPPGVGKTTLI   23 (193)
Q Consensus         3 i~~Ge~~~l~GpnGsGKSTLl   23 (193)
                      +..|.-+.+.+|.|||||+..
T Consensus        37 l~~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          37 VFSGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             HTTCSCEEEECSSHHHHHHHH
T ss_pred             HHcCCCEEEEcCCCCchhHHH
Confidence            346777889999999999863

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.65  E-value=0.025  Score=44.30  Aligned_cols=19  Identities=26%  Similarity=0.275  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 029421            9 FLVTGPPGVGKTTLIMRVL   27 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~   27 (193)
                      ++|+|.-|+|||||+..|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999995

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.65  E-value=0.034  Score=48.31  Aligned_cols=28  Identities=32%  Similarity=0.529  Sum_probs=24.0

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      ...+.+.|.|.||||||+-.|.|+..+.
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999887764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.39  E-value=0.026  Score=41.93  Aligned_cols=21  Identities=29%  Similarity=0.278  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 029421            9 FLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         9 ~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      ++++|.-++|||||+..|...
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~~   47 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILFL   47 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHH
Confidence            899999999999999999543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=92.17  E-value=0.036  Score=47.67  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=24.3

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      .+.+.+.|.|.||||||+-.|.+...+.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999988764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.058  Score=38.21  Aligned_cols=33  Identities=33%  Similarity=0.371  Sum_probs=26.0

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHhhcccCCCCeEE
Q 029421            7 KCFLVTGPP-GVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         7 e~~~l~Gpn-GsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      +.+.|+|.+ |+||||+--.|+..+....-++.+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~   35 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence            467899997 999999999998887765335544

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.12  E-value=0.038  Score=47.99  Aligned_cols=27  Identities=33%  Similarity=0.492  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +.+.+.|.|.||||||.-.|.|+..+.
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999888887764

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.60  E-value=0.17  Score=33.72  Aligned_cols=27  Identities=30%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcc
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLK   31 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~   31 (193)
                      +|.+..|+||=.|||||-|=..+-.+.
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~   27 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQ   27 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHH
Confidence            588999999999999996555444433

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.11  Score=36.58  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      |+.+++|+|-|  ||||.-.+|+-+++..
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~~   27 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQC   27 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHhC
Confidence            57899999999  5999999999998754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.43  E-value=0.12  Score=36.89  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=26.3

Q ss_pred             CCEEEEE-cCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            6 GKCFLVT-GPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         6 Ge~~~l~-GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      |.++++. +.-|+||||+.--|+..+.-..-++.+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vll   36 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLA   36 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence            6788888 778999999999999887753334544

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.04  E-value=0.87  Score=28.99  Aligned_cols=71  Identities=15%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~  182 (193)
                      ..|+++++|-- .++|-      .++++.+++  ...||+.+     ++.-.....-+-+.+..-+...|-+.++|.+++
T Consensus        43 ~~~dlillD~~mp~~~G------~~~~~~i~~~~~~pvI~lt-----~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i  111 (117)
T d2a9pa1          43 EQPDIIILDLMLPEIDG------LEVAKTIRKTSSVPILMLS-----AKDSEFDKVIGLELGADDYVTKPFSNRELQARV  111 (117)
T ss_dssp             HCCSEEEECSSCSSSCH------HHHHHHHHTTCCCCEEEEE-----SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred             cCCCEEEeccccCCCCc------cHHHHHHHhCCCCCEEEEe-----cCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence            47999999964 34442      334444443  56776653     444333332333445556677777888999988


Q ss_pred             HHHHH
Q 029421          183 YYQLT  187 (193)
Q Consensus       183 ~~~~~  187 (193)
                      .+.++
T Consensus       112 ~~~lr  116 (117)
T d2a9pa1         112 KALLR  116 (117)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            77665

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.37  E-value=0.11  Score=35.08  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=20.6

Q ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHhh
Q 029421            4 GAGKCFLVTGPPGVGKTTLIMRVLES   29 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKSTLl~~i~gl   29 (193)
                      +.|.+..|+||=.|||||-|=..+.-
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~   30 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRR   30 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHH
Confidence            46999999999999999965444433

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.15  E-value=1.7  Score=27.52  Aligned_cols=73  Identities=16%  Similarity=0.108  Sum_probs=45.2

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~  182 (193)
                      .+|+++++|-- .++|-      .++++..+.  ...||+.+     +|+-.....-|-+.+..-+...|-+.+++.+++
T Consensus        44 ~~~dliilD~~mp~~~g------~~~~~~~~~~~~~piI~lt-----~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i  112 (120)
T d1zgza1          44 QSVDLILLDINLPDENG------LMLTRALRERSTVGIILVT-----GRSDRIDRIVGLEMGADDYVTKPLELRELVVRV  112 (120)
T ss_dssp             SCCSEEEEESCCSSSCH------HHHHHHHHTTCCCEEEEEE-----SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred             cCCCEEeeehhhccchh------HHHHHHHhccCCCeEEEEE-----ccCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence            57999999975 34442      234444443  56666653     554433322333345556677777888999999


Q ss_pred             HHHHHHH
Q 029421          183 YYQLTDA  189 (193)
Q Consensus       183 ~~~~~~~  189 (193)
                      .+.+++.
T Consensus       113 ~~~lrR~  119 (120)
T d1zgza1         113 KNLLWRI  119 (120)
T ss_dssp             HHHHHHH
T ss_pred             HHHHccc
Confidence            8877653

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=1.3  Score=28.34  Aligned_cols=73  Identities=22%  Similarity=0.166  Sum_probs=45.6

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~  182 (193)
                      .+|+++++|=- .++|-      .++++.+++  +..||+.+     +|+-.....-+-+.+..-+...|-+.+++..++
T Consensus        45 ~~~dlii~D~~mp~~~G------~~~~~~~r~~~~~pii~lt-----~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~v  113 (121)
T d1xhfa1          45 YDINLVIMDINLPGKNG------LLLARELREQANVALMFLT-----GRDNEVDKILGLEIGADDYITKPFNPRELTIRA  113 (121)
T ss_dssp             SCCSEEEECSSCSSSCH------HHHHHHHHHHCCCEEEEEE-----SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred             cCCCEEEeecccCCccC------cHHHHHHHhcCCCcEEEEE-----CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence            57999999943 23332      223333332  67777663     454333333343455566677888899999999


Q ss_pred             HHHHHHH
Q 029421          183 YYQLTDA  189 (193)
Q Consensus       183 ~~~~~~~  189 (193)
                      .+.+++.
T Consensus       114 ~~~l~Rs  120 (121)
T d1xhfa1         114 RNLLSRT  120 (121)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9888765

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.94  E-value=1.8  Score=27.55  Aligned_cols=76  Identities=14%  Similarity=0.056  Sum_probs=47.1

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      ..|+++|+|=- -++|-.   .+...++.......||+.+     .++-.....-+-+.+..-+...|-+.+++.+++.+
T Consensus        44 ~~~dlillD~~mp~~~g~---~~~~~lr~~~~~~piI~lt-----~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~  115 (122)
T d1kgsa2          44 EPFDVVILDIMLPVHDGW---EILKSMRESGVNTPVLMLT-----ALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRA  115 (122)
T ss_dssp             SCCSEEEEESCCSSSCHH---HHHHHHHHTTCCCCEEEEE-----SSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHH
T ss_pred             hCccccccccccccchhH---HHHHHHHhcCCCCcEEEEc-----CCCCHHHHHHHHHcCCceeecCCCCHHHHHHHHHH
Confidence            57999999954 344421   1222233322256666652     55544444455566667778888889999999988


Q ss_pred             HHHHH
Q 029421          185 QLTDA  189 (193)
Q Consensus       185 ~~~~~  189 (193)
                      .+++.
T Consensus       116 ~l~r~  120 (122)
T d1kgsa2         116 LIRRK  120 (122)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77653

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.67  E-value=0.14  Score=35.74  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=34.0

Q ss_pred             cCCCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCCh
Q 029421          104 VGADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNR  175 (193)
Q Consensus       104 l~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~  175 (193)
                      ...+-+++++||. .-.+..........+.......-++..+--|  ..+...+..+++..+...+.+...+.
T Consensus       122 ~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~SATp--~~~~~~~~~~~~~l~~~~i~~~~~~~  192 (200)
T d1wp9a1         122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASP--GSTPEKIMEVINNLGIEHIEYRSENS  192 (200)
T ss_dssp             CTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCS--CSSHHHHHHHHHHTTCCEEEECCTTS
T ss_pred             hccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEEEEEecC--CCcHHHHHHHHhcCCceEEEeCCCCC
Confidence            3467789999999 3333222222222222222233344432211  12445566777776655555544443

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.25  E-value=1.3  Score=28.42  Aligned_cols=75  Identities=17%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      .+|+++|+|-- -++|-.   .+..-++.......||+.+     +++-.....-+-+.+..-+...|-+.++|.+++.+
T Consensus        44 ~~~dlvl~D~~mP~~~G~---el~~~ir~~~~~~piI~lt-----~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~  115 (121)
T d1ys7a2          44 NRPDAIVLDINMPVLDGV---SVVTALRAMDNDVPVCVLS-----ARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA  115 (121)
T ss_dssp             SCCSEEEEESSCSSSCHH---HHHHHHHHTTCCCCEEEEE-----CCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHH
T ss_pred             CCCCEEEEEeeccCcccH---HHHHHHHhcCCCCEEEEEE-----eeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence            57999999964 233321   1222233322367777763     44322222223345556677788888899999888


Q ss_pred             HHHH
Q 029421          185 QLTD  188 (193)
Q Consensus       185 ~~~~  188 (193)
                      .+++
T Consensus       116 ~l~r  119 (121)
T d1ys7a2         116 LLRR  119 (121)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            7765

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.59  E-value=0.27  Score=36.37  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=28.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEEeceE
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKVQGFY   43 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~~g~~   43 (193)
                      -.++.+.|.=|.||||+.-.++-.+.-..-++.+-+-|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            45888999999999999998888776543355443333

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=87.35  E-value=2.2  Score=27.09  Aligned_cols=75  Identities=12%  Similarity=-0.015  Sum_probs=43.6

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      ..|+++|+|=- -++|-   ..+...++.......||+++     +++-.....-|-+.++.-+...|-+.+++.+++.+
T Consensus        42 ~~~dlillD~~mP~~~G---~~~~~~lr~~~~~~~ii~it-----~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~  113 (120)
T d1p2fa2          42 EAFHVVVLDVMLPDYSG---YEICRMIKETRPETWVILLT-----LLSDDESVLKGFEAGADDYVTKPFNPEILLARVKR  113 (120)
T ss_dssp             SCCSEEEEESBCSSSBH---HHHHHHHHHHCTTSEEEEEE-----SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHH
T ss_pred             CCCCEEEEeCcccccch---hHHHHHHhhcCCCCcEEEEe-----cCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence            46899999963 23332   11222333322356666653     44433333334445666678888888899888877


Q ss_pred             HHHH
Q 029421          185 QLTD  188 (193)
Q Consensus       185 ~~~~  188 (193)
                      .+.+
T Consensus       114 ~l~r  117 (120)
T d1p2fa2         114 FLER  117 (120)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=86.40  E-value=2.6  Score=26.63  Aligned_cols=72  Identities=13%  Similarity=0.103  Sum_probs=43.7

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHh---CCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILE---SNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDN  181 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~---~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~  181 (193)
                      ..|+++|+|-- -++|-      .++++.++   ....+|+.+     +++-.....-+-+.+..-+...|-+.+++..+
T Consensus        43 ~~~dliilD~~mP~~~G------~e~~~~i~~~~~~~pvi~lt-----~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~  111 (119)
T d2pl1a1          43 HIPDIAIVDLGLPDEDG------LSLIRRWRSNDVSLPILVLT-----ARESWQDKVEVLSAGADDYVTKPFHIEEVMAR  111 (119)
T ss_dssp             SCCSEEEECSCCSSSCH------HHHHHHHHHTTCCSCEEEEE-----SCCCHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred             cccceeehhccCCCchh------HHHHHHHHhcCcccceEeee-----ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Confidence            57999999964 23331      23333332   256666663     44433332333345666677788888899999


Q ss_pred             HHHHHHH
Q 029421          182 IYYQLTD  188 (193)
Q Consensus       182 ~~~~~~~  188 (193)
                      +.+.+++
T Consensus       112 v~~~lrR  118 (119)
T d2pl1a1         112 MQALMRR  118 (119)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            9887765

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.33  E-value=0.21  Score=35.20  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029421            8 CFLVTGPPGVGKTTLIMRVLE   28 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~g   28 (193)
                      ++.|+|+..||||.+...+++
T Consensus         1 iiLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCccHHHHHHHHHh
Confidence            478999999999999998764

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=86.00  E-value=1.7  Score=27.56  Aligned_cols=75  Identities=20%  Similarity=0.194  Sum_probs=42.0

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      .+|+++|+|=- .++|-.  . +..-++.......||+.+     +++-.....-|-+.+..-+...|-+.++|.+++.+
T Consensus        45 ~~~dlillD~~mp~~~G~--~-~~~~~r~~~~~~~ii~lt-----~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~  116 (121)
T d1mvoa_          45 EKPDLIVLDVMLPKLDGI--E-VCKQLRQQKLMFPILMLT-----AKDEEFDKVLGLELGADDYMTKPFSPREVNARVKA  116 (121)
T ss_dssp             HCCSEEEEESSCSSSCHH--H-HHHHHHHTTCCCCEEEEE-----CTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHH
T ss_pred             ccccEEEecccccCCCCc--h-hhhhhhccCCCCEEEEEE-----eeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence            47999999965 233311  1 122222222256666653     33322222223345555677788888899999888


Q ss_pred             HHHH
Q 029421          185 QLTD  188 (193)
Q Consensus       185 ~~~~  188 (193)
                      .+++
T Consensus       117 ~lrR  120 (121)
T d1mvoa_         117 ILRR  120 (121)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            7764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.53  E-value=0.45  Score=34.80  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCC-CeEEeceE
Q 029421            8 CFLVTGPPGVGKTTLIMRVLESLKASNP-SLKVQGFY   43 (193)
Q Consensus         8 ~~~l~GpnGsGKSTLl~~i~gl~~~~~G-~i~~~g~~   43 (193)
                      .++|.|.=|+||||+.-.|+..+.-. | +|.+-+-|
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~-G~rVllID~D   38 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAM-GKTIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEEEC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhC-CCcEEEEecC
Confidence            68899999999999999998887653 5 45444444

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.34  E-value=0.27  Score=34.65  Aligned_cols=27  Identities=41%  Similarity=0.382  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      ..+++||+|.|  ||||.-.+|.-++...
T Consensus        13 ~~~~iAITGTn--GKTTt~~~l~~iL~~~   39 (207)
T d1j6ua3          13 KKEEFAVTGTD--GKTTTTAMVAHVLKHL   39 (207)
T ss_dssp             CCCEEEEECSS--SHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCC--CHHHHHHHHHHHHHhC
Confidence            46799999998  6999999999888653

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.01  E-value=0.31  Score=33.49  Aligned_cols=52  Identities=17%  Similarity=0.231  Sum_probs=38.2

Q ss_pred             CCCCCEEEEecC-C--CccccccchHHHHHHHHhCCCcEEEEecCCCCCCChh-HHHHHhcC
Q 029421          105 GADTDLFVIDEV-G--KMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIP-AVARLRNH  162 (193)
Q Consensus       105 ~~~p~llllDEp-~--~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~-~~~~~~d~  162 (193)
                      ..+.+++||||. .  .+.......+.++++....+.-+|++      .++.+ .+..+||.
T Consensus        92 ~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlT------Gr~~p~~L~e~ADl  147 (157)
T d1g5ta_          92 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIIT------GRGCHRDILDLADT  147 (157)
T ss_dssp             CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEE------CSSCCHHHHHHCSE
T ss_pred             cCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEE------CCCCCHHHHHhcce
Confidence            456899999999 3  55555566777777764458999999      88765 46667775

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.91  E-value=2.9  Score=26.36  Aligned_cols=72  Identities=18%  Similarity=0.172  Sum_probs=42.5

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~  182 (193)
                      .+|+++|+|-- -++|-      .++++.+++  ...+|+.+     +++-.....-|-+.+..-+...|-+.++|.+++
T Consensus        43 ~~~dliilD~~mP~~~G------~e~~~~ir~~~~~piI~lt-----~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i  111 (119)
T d1zh2a1          43 RKPDLIILDLGLPDGDG------IEFIRDLRQWSAVPVIVLS-----ARSEESDKIAALDAGADDYLSKPFGIGELQARL  111 (119)
T ss_dssp             HCCSEEEEESEETTEEH------HHHHHHHHTTCCCCEEEEE-----SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred             cCCCEEEeccccCCCCC------chHHHHHHhccCCcEEEEe-----ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence            47999999964 23331      233344433  55565553     444333333333445555677777888999998


Q ss_pred             HHHHHH
Q 029421          183 YYQLTD  188 (193)
Q Consensus       183 ~~~~~~  188 (193)
                      .+.+++
T Consensus       112 ~~~lrr  117 (119)
T d1zh2a1         112 RVALRR  117 (119)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            887765

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=84.84  E-value=0.5  Score=32.94  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            5 AGKCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         5 ~Ge~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      ++.+++|+|.|  ||||.-.+|..+++..
T Consensus        10 ~~~vI~VTGT~--GKTTt~~~l~~iL~~~   36 (204)
T d2jfga3          10 QAPIVAITGSN--GKSTVTTLVGEMAKAA   36 (204)
T ss_dssp             CSCEEEEECSS--SHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCC--CHHHHHHHHHHHHHhc
Confidence            46799999998  6999999999998754

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=84.52  E-value=3.9  Score=27.08  Aligned_cols=75  Identities=21%  Similarity=0.237  Sum_probs=44.0

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~  182 (193)
                      .+|+++|+|-- -++|-   ..+...++....  ...||+.+     +++-.....-|-+.+..-+...|-+.+++..++
T Consensus        54 ~~~DlillD~~mP~~dG---~el~~~ir~~~~~~~iPiI~lt-----~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i  125 (153)
T d1w25a2          54 GPVDLVIVNAAAKNFDG---LRFTAALRSEERTRQLPVLAMV-----DPDDRGRMVKALEIGVNDILSRPIDPQELSARV  125 (153)
T ss_dssp             SSCSEEEEETTCSSSCH---HHHHHHHHTSGGGTTCCEEEEE-----CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHH
T ss_pred             CCCCEEEEECccccccc---hHHHHHHHhccccccceeEEee-----cCCCHHHHHHHHhcCcceEEECCCCHHHHHHHH
Confidence            57999999975 34442   112223332222  56676663     444333333343456666777888888999888


Q ss_pred             HHHHHH
Q 029421          183 YYQLTD  188 (193)
Q Consensus       183 ~~~~~~  188 (193)
                      .+.+..
T Consensus       126 ~~~l~~  131 (153)
T d1w25a2         126 KTQIQR  131 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877654

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=84.24  E-value=3.7  Score=26.61  Aligned_cols=75  Identities=17%  Similarity=0.042  Sum_probs=43.5

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~  182 (193)
                      ..|+++++|-- .++|-   ..+...++....  +..||+.+     +|+-.....-|=+.+..-+...|-+.+++..++
T Consensus        44 ~~~dlil~D~~~p~~~G---~~~~~~ir~~~~~~~~piI~lt-----~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i  115 (139)
T d1w25a1          44 DLPDIILLDVMMPGMDG---FTVCRKLKDDPTTRHIPVVLIT-----ALDGRGDRIQGLESGASDFLTKPIDDVMLFARV  115 (139)
T ss_dssp             HCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTSCEEEEE-----CSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHH
T ss_pred             ccceeeeeeccccCCCc---hHHHHHhhhcccccCCCEEEEE-----cCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence            46999999954 23332   123344444332  56677763     455443332333445566677888888888888


Q ss_pred             HHHHHH
Q 029421          183 YYQLTD  188 (193)
Q Consensus       183 ~~~~~~  188 (193)
                      ...++.
T Consensus       116 ~~~lr~  121 (139)
T d1w25a1         116 RSLTRF  121 (139)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766553

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.08  E-value=0.49  Score=33.50  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=23.7

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            8 CFLVT-GPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         8 ~~~l~-GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      +++++ |.-|+||||+.-.++..+.-..-++.+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~Vll   35 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTI   35 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEE
Confidence            56666 888999999999999887643334443

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=82.93  E-value=0.57  Score=33.17  Aligned_cols=25  Identities=28%  Similarity=0.180  Sum_probs=21.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhhcccC
Q 029421            7 KCFLVTGPPGVGKTTLIMRVLESLKAS   33 (193)
Q Consensus         7 e~~~l~GpnGsGKSTLl~~i~gl~~~~   33 (193)
                      .+++|+|-|  ||||.-.+|+-+++..
T Consensus         6 ~vI~ITGT~--GKTTt~~~l~~iL~~~   30 (234)
T d1e8ca3           6 RLVGVTGTN--GKTTTTQLLAQWSQLL   30 (234)
T ss_dssp             EEEEEESSS--CHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCC--cHHHHHHHHHHHHHHC
Confidence            489999999  8999999999888654

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=82.69  E-value=3.4  Score=27.19  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=44.4

Q ss_pred             CCCCCEEEEecC-CCccccccchHHHHHHHHhC-----CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHH
Q 029421          105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILES-----NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSL  178 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~-----g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l  178 (193)
                      ...|+++|+|=- -++|      =.++++.+++     +..||+.+     +++-.....-|-+.+..-++..|-+.++|
T Consensus        60 ~~~pdlillD~~mP~~~------G~el~~~ir~~~~~~~ipiI~lT-----~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L  128 (149)
T d1k66a_          60 APRPAVILLDLNLPGTD------GREVLQEIKQDEVLKKIPVVIMT-----TSSNPKDIEICYSYSISSYIVKPLEIDRL  128 (149)
T ss_dssp             CCCCSEEEECSCCSSSC------HHHHHHHHTTSTTGGGSCEEEEE-----SCCCHHHHHHHHHTTCSEEEECCSSHHHH
T ss_pred             ccCCCeEEccccccCCC------cHHHHHHHHhccccCCCeEEEEe-----CCCCHHHHHHHHHCCCCEEEECCCCHHHH
Confidence            357999999964 2333      1333444432     45666552     55544443344445666667777788889


Q ss_pred             HHHHHHHHHHH
Q 029421          179 KDNIYYQLTDA  189 (193)
Q Consensus       179 ~~~~~~~~~~~  189 (193)
                      .+.+.+.++..
T Consensus       129 ~~~i~~~l~~~  139 (149)
T d1k66a_         129 TETVQTFIKYW  139 (149)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98888877643

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.44  E-value=0.22  Score=35.22  Aligned_cols=39  Identities=10%  Similarity=0.112  Sum_probs=26.0

Q ss_pred             CCCCCEEEEecC-CCccccccchHHHHHHHHhCCC-cEEEE
Q 029421          105 GADTDLFVIDEV-GKMELFSSSFFPAVLRILESNI-PVLAS  143 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~-tvl~~  143 (193)
                      ..+-+.+++||. .-+|......+..+++.+.++. +++++
T Consensus       145 ~~~l~~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~S  185 (209)
T d1q0ua_         145 VHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFS  185 (209)
T ss_dssp             GGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEE
T ss_pred             cccceEEEEeecccccccccHHHHHHHHHHCCCCCEEEEEE
Confidence            457789999998 4666554566777777665544 44554

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.42  E-value=0.66  Score=33.92  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=24.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhhcccCCCCeEE
Q 029421            6 GKCFLVTGPPGVGKTTLIMRVLESLKASNPSLKV   39 (193)
Q Consensus         6 Ge~~~l~GpnGsGKSTLl~~i~gl~~~~~G~i~~   39 (193)
                      ..++.+.|.=|+||||+.-.|+-.+....-++.+
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVll   53 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHL   53 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            3578888999999999988887766543223444

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=82.41  E-value=4.1  Score=25.62  Aligned_cols=72  Identities=17%  Similarity=0.195  Sum_probs=41.3

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      ..|+++++|=- -++|-.   .+.+-++....+..||+.+     +|.-.....-|-+.+..-+...|-+.+++.+.+.+
T Consensus        44 ~~~dlillD~~mP~~~G~---el~~~lr~~~~~~pvi~lt-----~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~  115 (119)
T d1peya_          44 ERPDLVLLDMKIPGMDGI---EILKRMKVIDENIRVIIMT-----AYGELDMIQESKELGALTHFAKPFDIDEIRDAVKK  115 (119)
T ss_dssp             HCCSEEEEESCCTTCCHH---HHHHHHHHHCTTCEEEEEE-----SSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHH
T ss_pred             CCCCEEEEeccCCCCCHH---HHHHHHHHhCCCCcEEEEe-----cCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence            46999999965 344421   1222233333367777763     55443333344455666667777778788777754


Q ss_pred             H
Q 029421          185 Q  185 (193)
Q Consensus       185 ~  185 (193)
                      .
T Consensus       116 ~  116 (119)
T d1peya_         116 Y  116 (119)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=81.80  E-value=4.3  Score=25.46  Aligned_cols=70  Identities=13%  Similarity=0.113  Sum_probs=38.4

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIY  183 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~  183 (193)
                      .+|+++++|=- -++|-   -.+.+-++....+..||+.+     +|+-.....-+-+.+..-+...|-+.+++.+.+.
T Consensus        45 ~~~dliilD~~mp~~~G---~e~~~~ir~~~~~~pvi~ls-----~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~  115 (118)
T d1u0sy_          45 LKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCS-----AMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALN  115 (118)
T ss_dssp             HCCSEEEEECSCGGGCH---HHHHHHHHHHCTTCCEEEEE-----CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHH
T ss_pred             ccCCEEEEecCCCCCCH---HHHHHHHHHhCCCCcEEEEE-----ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence            46999999953 13221   12222223333356666652     5554433333334555666777778888877764

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.71  E-value=2.2  Score=27.22  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=39.0

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      .+|+++|+|-- .++|-.  + +..-++.......||+.+     +++-.....-|-+.++.-+...|-+.+++...+.+
T Consensus        46 ~~~dlii~D~~mp~~~G~--e-l~~~l~~~~~~~piI~~t-----~~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~  117 (123)
T d1krwa_          46 KTPDVLLSDIRMPGMDGL--A-LLKQIKQRHPMLPVIIMT-----AHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVER  117 (123)
T ss_dssp             CCCSEEEECCSSSSSTTH--H-HHHHHHHHSSSCCEEESC-----CCSCHHHHHHHHHHTEEEECSSCCHHHHHHHHHHH
T ss_pred             CCCCEEEehhhcCCchHH--H-HHHHHHHhCCCCeEEEEe-----cCCCHHHHHHHHHcCCCeEEeCcCCHHHHHHHHHH
Confidence            57999999953 233311  1 222222222367777762     33322222233334444445555567778887777


Q ss_pred             HHHH
Q 029421          185 QLTD  188 (193)
Q Consensus       185 ~~~~  188 (193)
                      .+.+
T Consensus       118 ~l~~  121 (123)
T d1krwa_         118 AISH  121 (123)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            6654

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=81.69  E-value=0.56  Score=34.05  Aligned_cols=28  Identities=21%  Similarity=0.199  Sum_probs=22.9

Q ss_pred             cCCCEEEEEcCCCCcHHH--HHHHHHhhcc
Q 029421            4 GAGKCFLVTGPPGVGKTT--LIMRVLESLK   31 (193)
Q Consensus         4 ~~Ge~~~l~GpnGsGKST--Ll~~i~gl~~   31 (193)
                      -+|+-+.+..|+|||||.  ++-+|..++.
T Consensus        56 l~g~dvvi~a~TGsGKTlayllp~l~~l~~   85 (238)
T d1wrba1          56 LEHRDIMACAQTGSGKTAAFLIPIINHLVC   85 (238)
T ss_dssp             HTTCCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             hCCCCEEEECCCCCCcceeeHHHHHHHHHh
Confidence            368889999999999998  7777776653

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=81.07  E-value=3.1  Score=26.31  Aligned_cols=75  Identities=19%  Similarity=0.091  Sum_probs=43.2

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhC--CCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILES--NIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNI  182 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~--g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~  182 (193)
                      ..|+++|+|-- -++|-  . .+...++....  +..||+.+     +|+-.....-|-+.+..-+...|-+.+++.+++
T Consensus        43 ~~~dlil~D~~mp~~~G--~-~l~~~lr~~~~~~~~pvi~lt-----~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~v  114 (121)
T d1zesa1          43 PWPDLILLDWMLPGGSG--I-QFIKHLKRESMTRDIPVVMLT-----ARGEEEDRVRGLETGADDYITKPFSPKELVARI  114 (121)
T ss_dssp             SCCSEEEECSSCTTSCH--H-HHHHHHHHSTTTTTSCEEEEE-----SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred             cCCCEEEeecCCCCCCH--H-HHHHHHHhCccCCCCeEEEEE-----CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence            57999999964 34441  1 12333333222  56676652     454333322333345556677777888999998


Q ss_pred             HHHHHH
Q 029421          183 YYQLTD  188 (193)
Q Consensus       183 ~~~~~~  188 (193)
                      .+.+++
T Consensus       115 ~~~lrR  120 (121)
T d1zesa1         115 KAVMRR  120 (121)
T ss_dssp             HHHHHT
T ss_pred             HHHHcC
Confidence            877764

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=0.4  Score=34.02  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=23.6

Q ss_pred             CCCCCEEEEecC-CCcccc-ccchHHHHHHHHhCCC-cEEEE
Q 029421          105 GADTDLFVIDEV-GKMELF-SSSFFPAVLRILESNI-PVLAS  143 (193)
Q Consensus       105 ~~~p~llllDEp-~~LD~~-~~~~~~~ll~~l~~g~-tvl~~  143 (193)
                      ..+-+.+++||. .=+|.. ....+..+++.+.... +++++
T Consensus       143 l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~S  184 (207)
T d1t6na_         143 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS  184 (207)
T ss_dssp             CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred             ccccceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEe
Confidence            467889999998 456532 2344555555554444 45555

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.54  E-value=0.49  Score=36.67  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=18.3

Q ss_pred             cCCCEEEEEc--CCCCcHHHHHHH
Q 029421            4 GAGKCFLVTG--PPGVGKTTLIMR   25 (193)
Q Consensus         4 ~~Ge~~~l~G--pnGsGKSTLl~~   25 (193)
                      ++|+.+-+.|  ||+||||+|..+
T Consensus        14 P~g~~~yvaaAFPSaCGKTnlAMl   37 (363)
T d1khba1          14 PEGEKKYLAAAFPSACGKTNLAMM   37 (363)
T ss_dssp             TTSCEEEEEEECCTTSCHHHHHTC
T ss_pred             CCCCEEEEEEecCccccchhHHHh
Confidence            4688888887  899999999754

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=80.18  E-value=4.5  Score=25.60  Aligned_cols=75  Identities=20%  Similarity=0.119  Sum_probs=41.9

Q ss_pred             CCCCEEEEecC-CCccccccchHHHHHHHHhCCCcEEEEecCCCCCCChhHHHHHhcCCCcEEEEeCCCChhHHHHHHHH
Q 029421          106 ADTDLFVIDEV-GKMELFSSSFFPAVLRILESNIPVLASIPAPKSGRDIPAVARLRNHPGATIFTLSPGNRDSLKDNIYY  184 (193)
Q Consensus       106 ~~p~llllDEp-~~LD~~~~~~~~~ll~~l~~g~tvl~~~~~~~~tHd~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  184 (193)
                      ..|+++++|-- -++|-  . .+.+-++.......+|+.+     .|.-.....-|-+.+..-+...|-+.+++.+.+.+
T Consensus        46 ~~~dlvi~D~~mp~~~G--~-e~~~~lr~~~~~~~iI~lt-----~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~  117 (123)
T d1dbwa_          46 VRNGVLVTDLRMPDMSG--V-ELLRNLGDLKINIPSIVIT-----GHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIER  117 (123)
T ss_dssp             CCSEEEEEECCSTTSCH--H-HHHHHHHHTTCCCCEEEEE-----CTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHH
T ss_pred             cCCcEEEEeccCccccc--h-HHHHHHHhcCCCCeEEEEE-----eeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence            46899999974 23331  1 1222233322356666653     45433333334445556667777788888888876


Q ss_pred             HHHH
Q 029421          185 QLTD  188 (193)
Q Consensus       185 ~~~~  188 (193)
                      .+.+
T Consensus       118 a~e~  121 (123)
T d1dbwa_         118 ASEH  121 (123)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            6543